Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006632.t1 | XP_013456684.1 | 96.5 | 284 | 10 | 0 | 1 | 284 | 1 | 284 | 4.00E-160 | 573.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006632.t1 | O49459 | 79.9 | 194 | 38 | 1 | 24 | 217 | 36 | 228 | 2.0e-91 | 337.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006632.t1 | A0A072UXW5 | 96.5 | 284 | 10 | 0 | 1 | 284 | 1 | 284 | 2.9e-160 | 573.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene006632.t1 | TF | NAC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006632.t1 | MTR_4g078875 | 96.479 | 284 | 10 | 0 | 1 | 284 | 1 | 284 | 0.0 | 575 |
| MS.gene006632.t1 | MTR_2g090735 | 79.570 | 279 | 51 | 4 | 1 | 277 | 1 | 275 | 3.83e-152 | 426 |
| MS.gene006632.t1 | MTR_4g088245 | 67.159 | 271 | 75 | 7 | 13 | 277 | 32 | 294 | 3.40e-119 | 344 |
| MS.gene006632.t1 | MTR_2g014680 | 60.490 | 286 | 94 | 8 | 1 | 274 | 1 | 279 | 2.18e-112 | 327 |
| MS.gene006632.t1 | MTR_8g069160 | 73.709 | 213 | 49 | 4 | 13 | 220 | 32 | 242 | 4.57e-108 | 314 |
| MS.gene006632.t1 | MTR_8g102240 | 74.359 | 195 | 39 | 4 | 26 | 214 | 30 | 219 | 2.48e-95 | 289 |
| MS.gene006632.t1 | MTR_8g102240 | 74.359 | 195 | 39 | 4 | 26 | 214 | 30 | 219 | 2.55e-95 | 289 |
| MS.gene006632.t1 | MTR_5g053430 | 55.330 | 197 | 83 | 2 | 19 | 215 | 32 | 223 | 6.12e-69 | 220 |
| MS.gene006632.t1 | MTR_5g053430 | 55.330 | 197 | 83 | 2 | 19 | 215 | 32 | 223 | 8.27e-69 | 220 |
| MS.gene006632.t1 | MTR_1g093680 | 56.250 | 192 | 79 | 2 | 24 | 215 | 37 | 223 | 3.87e-68 | 219 |
| MS.gene006632.t1 | MTR_7g033320 | 54.054 | 185 | 82 | 1 | 24 | 208 | 34 | 215 | 1.05e-63 | 208 |
| MS.gene006632.t1 | MTR_1g093670 | 52.907 | 172 | 65 | 2 | 44 | 215 | 19 | 174 | 9.42e-50 | 167 |
| MS.gene006632.t1 | MTR_4g078895 | 71.642 | 67 | 19 | 0 | 23 | 89 | 12 | 78 | 1.82e-27 | 102 |
| MS.gene006632.t1 | MTR_7g011120 | 29.469 | 207 | 109 | 7 | 43 | 235 | 3 | 186 | 7.39e-16 | 76.6 |
| MS.gene006632.t1 | MTR_3g435150 | 28.512 | 242 | 144 | 6 | 48 | 282 | 16 | 235 | 1.24e-15 | 75.9 |
| MS.gene006632.t1 | MTR_7g085260 | 33.862 | 189 | 85 | 9 | 34 | 208 | 9 | 171 | 2.62e-14 | 72.8 |
| MS.gene006632.t1 | MTR_6g012670 | 34.722 | 144 | 74 | 5 | 48 | 189 | 20 | 145 | 6.14e-14 | 71.2 |
| MS.gene006632.t1 | MTR_6g032770 | 33.140 | 172 | 81 | 8 | 48 | 206 | 18 | 168 | 2.56e-13 | 69.7 |
| MS.gene006632.t1 | MTR_7g005280 | 32.653 | 147 | 76 | 7 | 48 | 191 | 15 | 141 | 6.90e-13 | 67.4 |
| MS.gene006632.t1 | MTR_3g088110 | 28.641 | 206 | 105 | 8 | 48 | 246 | 7 | 177 | 1.47e-12 | 67.0 |
| MS.gene006632.t1 | MTR_4g036030 | 29.480 | 173 | 95 | 7 | 42 | 206 | 1 | 154 | 1.51e-12 | 67.4 |
| MS.gene006632.t1 | MTR_5g014300 | 30.769 | 169 | 89 | 8 | 48 | 205 | 6 | 157 | 1.99e-12 | 67.0 |
| MS.gene006632.t1 | MTR_3g109340 | 29.609 | 179 | 102 | 7 | 33 | 206 | 9 | 168 | 2.16e-12 | 67.0 |
| MS.gene006632.t1 | MTR_3g093050 | 28.395 | 162 | 88 | 6 | 33 | 187 | 7 | 147 | 5.90e-12 | 66.2 |
| MS.gene006632.t1 | MTR_3g093050 | 28.395 | 162 | 88 | 6 | 33 | 187 | 7 | 147 | 7.03e-12 | 65.9 |
| MS.gene006632.t1 | MTR_2g078700 | 34.247 | 146 | 74 | 6 | 48 | 189 | 23 | 150 | 8.69e-12 | 65.1 |
| MS.gene006632.t1 | MTR_3g116070 | 33.557 | 149 | 78 | 6 | 47 | 191 | 22 | 153 | 1.32e-11 | 64.7 |
| MS.gene006632.t1 | MTR_5g012080 | 29.714 | 175 | 94 | 8 | 42 | 206 | 1 | 156 | 2.16e-11 | 63.9 |
| MS.gene006632.t1 | MTR_4g101680 | 29.480 | 173 | 95 | 7 | 42 | 206 | 1 | 154 | 2.35e-11 | 63.9 |
| MS.gene006632.t1 | MTR_8g059170 | 31.469 | 143 | 80 | 4 | 48 | 189 | 14 | 139 | 3.02e-11 | 63.5 |
| MS.gene006632.t1 | MTR_2g080010 | 32.237 | 152 | 81 | 7 | 46 | 193 | 13 | 146 | 3.97e-11 | 63.2 |
| MS.gene006632.t1 | MTR_8g063550 | 29.143 | 175 | 98 | 7 | 45 | 211 | 3 | 159 | 4.10e-11 | 63.5 |
| MS.gene006632.t1 | MTR_8g063550 | 29.143 | 175 | 98 | 7 | 45 | 211 | 3 | 159 | 4.74e-11 | 63.2 |
| MS.gene006632.t1 | MTR_8g099750 | 30.000 | 150 | 83 | 7 | 43 | 189 | 9 | 139 | 4.75e-11 | 61.6 |
| MS.gene006632.t1 | MTR_8g063550 | 29.143 | 175 | 98 | 7 | 45 | 211 | 3 | 159 | 6.33e-11 | 62.4 |
| MS.gene006632.t1 | MTR_1g069805 | 30.286 | 175 | 95 | 9 | 41 | 208 | 2 | 156 | 6.91e-11 | 62.0 |
| MS.gene006632.t1 | MTR_8g094580 | 30.345 | 145 | 82 | 5 | 48 | 191 | 7 | 133 | 9.62e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006632.t1 | AT4G28500 | 79.188 | 197 | 40 | 1 | 21 | 217 | 33 | 228 | 1.64e-114 | 332 |
| MS.gene006632.t1 | AT1G28470 | 78.974 | 195 | 38 | 2 | 23 | 215 | 50 | 243 | 1.32e-108 | 317 |
| MS.gene006632.t1 | AT4G29230 | 70.792 | 202 | 47 | 2 | 24 | 218 | 29 | 225 | 1.42e-98 | 296 |
| MS.gene006632.t1 | AT4G29230 | 70.792 | 202 | 47 | 2 | 24 | 218 | 29 | 225 | 5.67e-98 | 296 |
| MS.gene006632.t1 | AT4G29230 | 70.297 | 202 | 47 | 2 | 24 | 218 | 29 | 224 | 4.64e-97 | 294 |
| MS.gene006632.t1 | AT5G56620 | 65.517 | 203 | 56 | 4 | 26 | 218 | 25 | 223 | 3.79e-90 | 274 |
| MS.gene006632.t1 | AT5G56620 | 65.517 | 203 | 56 | 4 | 26 | 218 | 25 | 223 | 4.06e-90 | 273 |
| MS.gene006632.t1 | AT5G56620 | 65.517 | 203 | 56 | 4 | 26 | 218 | 25 | 223 | 8.66e-90 | 272 |
| MS.gene006632.t1 | AT1G25580 | 56.842 | 190 | 71 | 4 | 24 | 213 | 37 | 215 | 3.30e-65 | 211 |
| MS.gene006632.t1 | AT5G14490 | 51.064 | 188 | 87 | 3 | 26 | 213 | 36 | 218 | 9.53e-56 | 181 |
| MS.gene006632.t1 | AT5G14490 | 51.064 | 188 | 87 | 3 | 26 | 213 | 36 | 218 | 1.75e-55 | 182 |
| MS.gene006632.t1 | AT5G14490 | 51.064 | 188 | 87 | 3 | 26 | 213 | 39 | 221 | 2.35e-55 | 182 |
| MS.gene006632.t1 | AT5G14490 | 51.064 | 188 | 87 | 3 | 26 | 213 | 39 | 221 | 2.91e-55 | 182 |
| MS.gene006632.t1 | AT3G01600 | 46.445 | 211 | 97 | 4 | 15 | 210 | 7 | 216 | 4.10e-51 | 172 |
| MS.gene006632.t1 | AT3G04060 | 31.667 | 180 | 98 | 6 | 40 | 211 | 12 | 174 | 5.30e-15 | 74.3 |
| MS.gene006632.t1 | AT5G61430 | 34.965 | 143 | 75 | 5 | 48 | 189 | 16 | 141 | 9.85e-15 | 73.6 |
| MS.gene006632.t1 | AT5G18270 | 32.778 | 180 | 94 | 7 | 41 | 211 | 14 | 175 | 2.06e-14 | 72.8 |
| MS.gene006632.t1 | AT5G18270 | 32.778 | 180 | 94 | 7 | 41 | 211 | 14 | 175 | 3.63e-14 | 72.0 |
| MS.gene006632.t1 | AT3G18400 | 31.902 | 163 | 90 | 5 | 48 | 206 | 5 | 150 | 4.80e-14 | 71.6 |
| MS.gene006632.t1 | AT5G53950 | 31.959 | 194 | 97 | 9 | 37 | 218 | 9 | 179 | 1.00e-13 | 70.9 |
| MS.gene006632.t1 | AT1G02230 | 31.638 | 177 | 95 | 7 | 49 | 218 | 4 | 161 | 2.04e-13 | 70.1 |
| MS.gene006632.t1 | AT5G07680 | 30.769 | 169 | 93 | 5 | 48 | 209 | 3 | 154 | 2.51e-13 | 69.3 |
| MS.gene006632.t1 | AT5G07680 | 30.769 | 169 | 93 | 5 | 48 | 209 | 17 | 168 | 2.56e-13 | 69.3 |
| MS.gene006632.t1 | AT4G36160 | 32.738 | 168 | 86 | 7 | 47 | 206 | 9 | 157 | 3.18e-13 | 69.7 |
| MS.gene006632.t1 | AT4G36160 | 32.738 | 168 | 86 | 7 | 47 | 206 | 9 | 157 | 3.18e-13 | 69.7 |
| MS.gene006632.t1 | AT4G36160 | 32.738 | 168 | 86 | 7 | 47 | 206 | 13 | 161 | 3.61e-13 | 69.3 |
| MS.gene006632.t1 | AT1G01720 | 32.000 | 150 | 83 | 5 | 42 | 190 | 1 | 132 | 4.56e-13 | 68.6 |
| MS.gene006632.t1 | AT5G04410 | 30.726 | 179 | 94 | 7 | 41 | 209 | 2 | 160 | 4.79e-13 | 69.3 |
| MS.gene006632.t1 | AT2G24430 | 30.588 | 170 | 95 | 6 | 47 | 210 | 15 | 167 | 6.81e-13 | 68.2 |
| MS.gene006632.t1 | AT2G24430 | 30.588 | 170 | 95 | 6 | 47 | 210 | 15 | 167 | 6.81e-13 | 68.2 |
| MS.gene006632.t1 | AT1G02220 | 33.566 | 143 | 74 | 6 | 49 | 188 | 4 | 128 | 1.00e-12 | 68.2 |
| MS.gene006632.t1 | AT1G12260 | 30.058 | 173 | 94 | 8 | 42 | 206 | 1 | 154 | 2.91e-12 | 66.6 |
| MS.gene006632.t1 | AT1G12260 | 30.058 | 173 | 94 | 8 | 42 | 206 | 1 | 154 | 3.32e-12 | 66.2 |
| MS.gene006632.t1 | AT5G46590 | 30.539 | 167 | 90 | 8 | 48 | 205 | 6 | 155 | 5.51e-12 | 65.5 |
| MS.gene006632.t1 | AT2G33480 | 30.872 | 149 | 82 | 6 | 48 | 195 | 15 | 143 | 1.98e-11 | 63.5 |
| MS.gene006632.t1 | AT5G46590 | 32.000 | 150 | 81 | 7 | 48 | 193 | 6 | 138 | 1.99e-11 | 63.5 |
| MS.gene006632.t1 | AT2G33480 | 29.878 | 164 | 92 | 7 | 48 | 208 | 15 | 158 | 2.06e-11 | 63.5 |
| MS.gene006632.t1 | AT1G65910 | 32.075 | 159 | 81 | 9 | 48 | 199 | 6 | 144 | 2.57e-11 | 64.3 |
| MS.gene006632.t1 | AT5G08790 | 31.250 | 144 | 80 | 5 | 48 | 190 | 7 | 132 | 2.69e-11 | 63.2 |
| MS.gene006632.t1 | AT1G62700 | 29.480 | 173 | 95 | 7 | 42 | 206 | 1 | 154 | 5.08e-11 | 63.2 |
| MS.gene006632.t1 | AT1G62700 | 29.480 | 173 | 95 | 7 | 42 | 206 | 1 | 154 | 5.08e-11 | 63.2 |
| MS.gene006632.t1 | AT1G34190 | 31.293 | 147 | 79 | 6 | 51 | 193 | 19 | 147 | 5.31e-11 | 63.2 |
| MS.gene006632.t1 | AT5G13180 | 33.562 | 146 | 72 | 8 | 48 | 189 | 14 | 138 | 6.62e-11 | 61.6 |
| MS.gene006632.t1 | AT1G76420 | 29.834 | 181 | 94 | 8 | 47 | 216 | 21 | 179 | 8.70e-11 | 62.0 |
| MS.gene006632.t1 | AT3G12977 | 25.103 | 243 | 123 | 9 | 48 | 276 | 18 | 215 | 9.83e-11 | 61.6 |
Find 57 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATGAAAGACTCTATTCT+TGG | 0.244819 | 4.4:-31856673 | MS.gene006632:CDS |
| CCTACTCTTGAAGGAGAAAA+TGG | 0.244985 | 4.4:-31860525 | MS.gene006632:CDS |
| CTTGTACTTTACACAAACTA+TGG | 0.313224 | 4.4:-31856838 | MS.gene006632:CDS |
| TCAAGAGATTCTTGAACATT+TGG | 0.316828 | 4.4:-31860604 | MS.gene006632:CDS |
| GAAAGCCAGAGAAAACAAAT+TGG | 0.326530 | 4.4:-31856807 | MS.gene006632:CDS |
| TATATACCTGGTAGTTTCTC+TGG | 0.365477 | 4.4:+31860486 | None:intergenic |
| TTAATTAAGGAACCTGATCT+TGG | 0.368798 | 4.4:+31861013 | None:intergenic |
| GGTGAAAGAAATGGCGGATC+AGG | 0.399922 | 4.4:+31857007 | None:intergenic |
| TTCACTCCAGCTGGCAATCC+AGG | 0.423620 | 4.4:+31860642 | None:intergenic |
| CACTTGAATCAAGGATTGAA+TGG | 0.428533 | 4.4:+31856490 | None:intergenic |
| CATAGTTTGTGTAAAGTACA+AGG | 0.433161 | 4.4:+31856839 | None:intergenic |
| GAGTTCATCCCTACTCTTGA+AGG | 0.437508 | 4.4:-31860534 | MS.gene006632:CDS |
| TGATCCGCCATTTCTTTCAC+CGG | 0.439231 | 4.4:-31857005 | MS.gene006632:CDS |
| TGTTCCTGTTGTGTATGCCT+TGG | 0.446215 | 4.4:+31856978 | None:intergenic |
| GAAACCCGTTGGCATAAAAC+AGG | 0.460349 | 4.4:-31856913 | MS.gene006632:CDS |
| AACTTGGAATTGTTGTAGAC+TGG | 0.461374 | 4.4:+31856880 | None:intergenic |
| TCTTCAGGAGTAAGCAAAGA+TGG | 0.468322 | 4.4:-31857030 | MS.gene006632:intron |
| CCATCCAAGGCATACACAAC+AGG | 0.469431 | 4.4:-31856982 | MS.gene006632:CDS |
| GAATTACCACCACACTGTCT+TGG | 0.486516 | 4.4:+31856700 | None:intergenic |
| TTGTGTATGCCTTGGATGGC+CGG | 0.487616 | 4.4:+31856986 | None:intergenic |
| GACTTACCTGGATTGCCAGC+TGG | 0.488076 | 4.4:-31860648 | MS.gene006632:CDS |
| AATTTCATATCATTTGATCA+AGG | 0.491183 | 4.4:-31856565 | MS.gene006632:CDS |
| TCTTGAACATTTGGAAGCAA+AGG | 0.493075 | 4.4:-31860595 | MS.gene006632:CDS |
| GTGATGCATCAGTATCATCT+TGG | 0.493893 | 4.4:-31856784 | MS.gene006632:CDS |
| TTGAGTTTGATAGAAAACTT+TGG | 0.497854 | 4.4:+31856723 | None:intergenic |
| AAAGCCAGAGAAAACAAATT+GGG | 0.499778 | 4.4:-31856806 | MS.gene006632:CDS |
| ATTTCATATCATTTGATCAA+GGG | 0.503525 | 4.4:-31856564 | MS.gene006632:CDS |
| GAGCATTGCTAGATCTATGT+TGG | 0.506944 | 4.4:+31856539 | None:intergenic |
| TGATGCATCAGTATCATCTT+GGG | 0.507024 | 4.4:-31856783 | MS.gene006632:CDS |
| TCATATCAAAGGCCAAGATC+AGG | 0.513679 | 4.4:-31861025 | MS.gene006632:intron |
| GGATCAAACTTCACTCCAGC+TGG | 0.519384 | 4.4:+31860633 | None:intergenic |
| AATAATAGCATCACAGTGGA+TGG | 0.523592 | 4.4:-31861090 | MS.gene006632:CDS |
| GGGATGAACTCATCAATTAG+AGG | 0.528142 | 4.4:+31860546 | None:intergenic |
| TACAACAATTCCAAGTTGAA+AGG | 0.529222 | 4.4:-31856874 | MS.gene006632:CDS |
| CATCACAGTGGATGGAAGAA+AGG | 0.532312 | 4.4:-31861082 | MS.gene006632:CDS |
| TCAAGAATCTCTTGATCTGT+AGG | 0.534425 | 4.4:+31860612 | None:intergenic |
| TGGATGGCCGGTGAAAGAAA+TGG | 0.540700 | 4.4:+31856998 | None:intergenic |
| GGTGGAATTAATGACTTACC+TGG | 0.548384 | 4.4:-31860660 | MS.gene006632:CDS |
| CCTGTTGTGTATGCCTTGGA+TGG | 0.549971 | 4.4:+31856982 | None:intergenic |
| AGTGATGAAGAAGAGAAAGA+AGG | 0.559824 | 4.4:-31856760 | MS.gene006632:CDS |
| TTTCTTTCACCGGCCATCCA+AGG | 0.565155 | 4.4:-31856995 | MS.gene006632:CDS |
| GAAGGGTCAAAGTGGGAATG+AGG | 0.565748 | 4.4:-31856641 | MS.gene006632:CDS |
| AAACTATGAAGGGTCAAAGT+GGG | 0.577178 | 4.4:-31856648 | MS.gene006632:CDS |
| AGTGGGAATGAGGTAATCAA+TGG | 0.579023 | 4.4:-31856631 | MS.gene006632:CDS |
| ACATGTGGTCATCATATCAA+AGG | 0.587928 | 4.4:-31861036 | MS.gene006632:CDS |
| ACTCATCCAGAGAAACTACC+AGG | 0.603901 | 4.4:-31860492 | MS.gene006632:intron |
| AAAACTATGAAGGGTCAAAG+TGG | 0.604850 | 4.4:-31856649 | MS.gene006632:CDS |
| GTACATTCGGATCACGAGGA+CGG | 0.605336 | 4.4:-31856940 | MS.gene006632:CDS |
| GGATGAACTCATCAATTAGA+GGG | 0.619021 | 4.4:+31860547 | None:intergenic |
| AACATTTGGAAGCAAAGGTG+AGG | 0.627859 | 4.4:-31860590 | MS.gene006632:CDS |
| ATTAGAACTTGTCTCACATG+TGG | 0.635438 | 4.4:-31861051 | MS.gene006632:CDS |
| AGGACGGAAGCGAAACCCGT+TGG | 0.648723 | 4.4:-31856924 | MS.gene006632:CDS |
| AAAAGTACATTCGGATCACG+AGG | 0.691199 | 4.4:-31856944 | MS.gene006632:CDS |
| AAACAATAATAGCATCACAG+TGG | 0.704092 | 4.4:-31861094 | MS.gene006632:CDS |
| ATGGCCGGTGAAAGAAATGG+CGG | 0.706386 | 4.4:+31857001 | None:intergenic |
| CAAACTCAACCAAGACAGTG+TGG | 0.711030 | 4.4:-31856709 | MS.gene006632:CDS |
| ACTCAACCAAGACAGTGTGG+TGG | 0.739755 | 4.4:-31856706 | MS.gene006632:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGCATTTATAATTATTAAA+AGG | - | chr4.4:31859426-31859445 | MS.gene006632:intron | 10.0% |
| !! | AGCATTTATAATTATTAAAA+GGG | - | chr4.4:31859427-31859446 | MS.gene006632:intron | 10.0% |
| !! | ATATCAATGAAAAATAATTA+GGG | - | chr4.4:31856931-31856950 | MS.gene006632:CDS | 10.0% |
| !! | CATATTTAACTAAAAATAAA+AGG | + | chr4.4:31857262-31857281 | None:intergenic | 10.0% |
| !! | TTTCAAGATAAATTAATAAA+AGG | - | chr4.4:31858534-31858553 | MS.gene006632:intron | 10.0% |
| !!! | AAAACTATTTTTCAATAAAT+TGG | + | chr4.4:31858611-31858630 | None:intergenic | 10.0% |
| !!! | ATTTAATTTACTCAAAAAAT+TGG | - | chr4.4:31860295-31860314 | MS.gene006632:intron | 10.0% |
| !! | AAATTAACATTTCAATATTC+AGG | - | chr4.4:31857962-31857981 | MS.gene006632:intron | 15.0% |
| !! | AAATTGAATTATATTTCTTC+AGG | - | chr4.4:31860570-31860589 | MS.gene006632:CDS | 15.0% |
| !! | ACATTAAAATATACATAAGT+TGG | + | chr4.4:31857459-31857478 | None:intergenic | 15.0% |
| !! | ATGATAAATAATGTTTATCA+TGG | + | chr4.4:31856639-31856658 | None:intergenic | 15.0% |
| !! | CAATATTCATATAAACTTAA+TGG | + | chr4.4:31859331-31859350 | None:intergenic | 15.0% |
| !! | CATTAAGTTTATATGAATAT+TGG | - | chr4.4:31859329-31859348 | MS.gene006632:intron | 15.0% |
| !! | CTAAGATTATAAGAATTATT+AGG | + | chr4.4:31858588-31858607 | None:intergenic | 15.0% |
| !! | GATATCAATGAAAAATAATT+AGG | - | chr4.4:31856930-31856949 | MS.gene006632:CDS | 15.0% |
| !! | TGAAAATAAAATTGTAATGT+TGG | + | chr4.4:31859142-31859161 | None:intergenic | 15.0% |
| !! | TTGCAATTAAAAAAATTGAA+TGG | + | chr4.4:31859408-31859427 | None:intergenic | 15.0% |
| !!! | AAAAAAAGTTATTAGTTTCT+AGG | + | chr4.4:31856869-31856888 | None:intergenic | 15.0% |
| !!! | AAAGTGAAATTTATTTTTAG+AGG | - | chr4.4:31857716-31857735 | MS.gene006632:intron | 15.0% |
| !!! | AACTTTTTTTTCTTTTAGTT+TGG | - | chr4.4:31856879-31856898 | MS.gene006632:CDS | 15.0% |
| !!! | AAGTGAAATTTATTTTTAGA+GGG | - | chr4.4:31857717-31857736 | MS.gene006632:intron | 15.0% |
| !!! | AATTGATGATGTTTTTTTTA+AGG | - | chr4.4:31858009-31858028 | MS.gene006632:intron | 15.0% |
| !!! | AGTCCTTATTTTAATTTTAT+AGG | - | chr4.4:31856722-31856741 | MS.gene006632:CDS | 15.0% |
| !!! | AGTTTTATTTATCTTAGTTT+GGG | + | chr4.4:31859831-31859850 | None:intergenic | 15.0% |
| !!! | ATTGATGATGTTTTTTTTAA+GGG | - | chr4.4:31858010-31858029 | MS.gene006632:intron | 15.0% |
| !!! | GTCCTTATTTTAATTTTATA+GGG | - | chr4.4:31856723-31856742 | MS.gene006632:CDS | 15.0% |
| !!! | TAGTTTTATTTATCTTAGTT+TGG | + | chr4.4:31859832-31859851 | None:intergenic | 15.0% |
| !!! | TTATGTATTTAATTTGAGTT+CGG | - | chr4.4:31860148-31860167 | MS.gene006632:intron | 15.0% |
| !!! | TTTATTTTCATTGAATAACA+TGG | - | chr4.4:31857792-31857811 | MS.gene006632:intron | 15.0% |
| !!! | TTTTTATTAAGTAAGATACA+TGG | + | chr4.4:31858685-31858704 | None:intergenic | 15.0% |
| !! | AACTAAAGAAAATATGATAG+AGG | - | chr4.4:31859847-31859866 | MS.gene006632:intron | 20.0% |
| !! | AAGATTCATTGATATAAACT+AGG | - | chr4.4:31858866-31858885 | MS.gene006632:intron | 20.0% |
| !! | AATATTCAGGCTAATAATAA+TGG | - | chr4.4:31857975-31857994 | MS.gene006632:intron | 20.0% |
| !! | AATTTCATATCATTTGATCA+AGG | - | chr4.4:31861050-31861069 | MS.gene006632:CDS | 20.0% |
| !! | ACAAACTCTAATATCAAATT+AGG | + | chr4.4:31859807-31859826 | None:intergenic | 20.0% |
| !! | ACAACTACTTTAATAGATTA+TGG | + | chr4.4:31858201-31858220 | None:intergenic | 20.0% |
| !! | AGATTCATTGATATAAACTA+GGG | - | chr4.4:31858867-31858886 | MS.gene006632:intron | 20.0% |
| !! | AGTTATGGGTTTATAATTTA+GGG | + | chr4.4:31859738-31859757 | None:intergenic | 20.0% |
| !! | ATTAAAAAAATTGAATGGAG+AGG | + | chr4.4:31859403-31859422 | None:intergenic | 20.0% |
| !! | ATTATTAAAAGGGTAACTAA+AGG | - | chr4.4:31859437-31859456 | MS.gene006632:intron | 20.0% |
| !! | ATTTCATATCATTTGATCAA+GGG | - | chr4.4:31861051-31861070 | MS.gene006632:CDS | 20.0% |
| !! | CAAACTCTAATATCAAATTA+GGG | + | chr4.4:31859806-31859825 | None:intergenic | 20.0% |
| !! | CGTAAACTCAAATAAAAAAT+GGG | - | chr4.4:31859873-31859892 | MS.gene006632:intron | 20.0% |
| !! | GTAAACTCAAATAAAAAATG+GGG | - | chr4.4:31859874-31859893 | MS.gene006632:intron | 20.0% |
| !! | GTCCCTATAAAATTAAAATA+AGG | + | chr4.4:31856728-31856747 | None:intergenic | 20.0% |
| !! | GTTTACATTTCTTACATTAT+AGG | + | chr4.4:31859207-31859226 | None:intergenic | 20.0% |
| !! | TAAACTCAAATAAAAAATGG+GGG | - | chr4.4:31859875-31859894 | MS.gene006632:intron | 20.0% |
| !! | TATGAGTTTACTTAAAATGA+TGG | - | chr4.4:31857658-31857677 | MS.gene006632:intron | 20.0% |
| !! | TATTGTATGTAATATATACC+TGG | + | chr4.4:31857144-31857163 | None:intergenic | 20.0% |
| !! | TCGTAAACTCAAATAAAAAA+TGG | - | chr4.4:31859872-31859891 | MS.gene006632:intron | 20.0% |
| !! | TGAAATTAAAATGATAGAGA+AGG | + | chr4.4:31857937-31857956 | None:intergenic | 20.0% |
| !! | TGCGAATTTAATGATAAATA+AGG | - | chr4.4:31858239-31858258 | MS.gene006632:intron | 20.0% |
| !! | TGTGATTTAATTAGCATAAA+TGG | + | chr4.4:31857909-31857928 | None:intergenic | 20.0% |
| !! | TTAAAAATAGGGACAAAAAA+TGG | + | chr4.4:31857435-31857454 | None:intergenic | 20.0% |
| !! | TTGAGTAAATTAAATGAGTT+CGG | + | chr4.4:31860290-31860309 | None:intergenic | 20.0% |
| !!! | AAAAAGAAGAAAAGTACATT+CGG | - | chr4.4:31860662-31860681 | MS.gene006632:CDS | 20.0% |
| !!! | AATATTGACATTTTACTATG+TGG | - | chr4.4:31860085-31860104 | MS.gene006632:intron | 20.0% |
| !!! | ATGAATTTGATAACAAATCT+GGG | + | chr4.4:31859964-31859983 | None:intergenic | 20.0% |
| !!! | ATGGTGATTGAAAATTTTAT+AGG | + | chr4.4:31857416-31857435 | None:intergenic | 20.0% |
| !!! | ATTTGTTATCAAATTCATCA+CGG | - | chr4.4:31859966-31859985 | MS.gene006632:intron | 20.0% |
| !!! | ATTTTTTATTTGAGTTTACG+AGG | + | chr4.4:31859873-31859892 | None:intergenic | 20.0% |
| !!! | TATGTATTTAATTTGAGTTC+GGG | - | chr4.4:31860149-31860168 | MS.gene006632:intron | 20.0% |
| !!! | TGAAAACAGAAATTTTTTGA+AGG | - | chr4.4:31857689-31857708 | MS.gene006632:intron | 20.0% |
| !!! | TTAGTATTTTTCTTATGTTG+CGG | - | chr4.4:31859540-31859559 | MS.gene006632:intron | 20.0% |
| !!! | TTTTAACTCGATTTTAATGT+TGG | + | chr4.4:31859065-31859084 | None:intergenic | 20.0% |
| !!! | TTTTTTGTCTAATTGTGAAT+TGG | + | chr4.4:31860387-31860406 | None:intergenic | 20.0% |
| ! | AAACATCAAAAGAAAAGGAA+TGG | - | chr4.4:31858331-31858350 | MS.gene006632:intron | 25.0% |
| ! | AAACATCAAAAGAAAAGGAA+TGG | + | chr4.4:31858350-31858331 | None:intergenic | 25.0% |
| ! | AAATTCAAACCAAACAAATG+CGG | - | chr4.4:31858988-31859007 | MS.gene006632:intron | 25.0% |
| ! | AACATTGCATATATTATGCA+AGG | - | chr4.4:31858812-31858831 | MS.gene006632:intron | 25.0% |
| ! | AATCAACAGAAAGTCAATAT+TGG | - | chr4.4:31860045-31860064 | MS.gene006632:intron | 25.0% |
| ! | AGCTAAAACATCAAAAGAAA+AGG | - | chr4.4:31858326-31858345 | MS.gene006632:intron | 25.0% |
| ! | AGTGCTTATAAAAATAGACA+AGG | + | chr4.4:31858384-31858403 | None:intergenic | 25.0% |
| ! | ATCTAACGGTTAAGTATAAA+TGG | - | chr4.4:31860241-31860260 | MS.gene006632:intron | 25.0% |
| ! | ATGTGGCAAAAAAAATCTAA+CGG | - | chr4.4:31860227-31860246 | MS.gene006632:intron | 25.0% |
| ! | ATTATGAAAGACTCTATTCT+TGG | - | chr4.4:31860942-31860961 | MS.gene006632:intron | 25.0% |
| ! | ATTCTTGGAAAAACTATGAA+GGG | - | chr4.4:31860957-31860976 | MS.gene006632:intron | 25.0% |
| ! | GAGTTATGGGTTTATAATTT+AGG | + | chr4.4:31859739-31859758 | None:intergenic | 25.0% |
| ! | GAGTTCAAACTAATAGAAAA+AGG | - | chr4.4:31860348-31860367 | MS.gene006632:intron | 25.0% |
| ! | GATTCATTGATATAAACTAG+GGG | - | chr4.4:31858868-31858887 | MS.gene006632:intron | 25.0% |
| ! | GCTAATAATAATGGTTAAGA+GGG | - | chr4.4:31857984-31858003 | MS.gene006632:intron | 25.0% |
| ! | GTAGAGACTAAATTAAAAAG+TGG | - | chr4.4:31856831-31856850 | MS.gene006632:CDS | 25.0% |
| ! | GTGCTTATAAAAATAGACAA+GGG | + | chr4.4:31858383-31858402 | None:intergenic | 25.0% |
| ! | GTTATGGGTTTATAATTTAG+GGG | + | chr4.4:31859737-31859756 | None:intergenic | 25.0% |
| ! | TAAATGGAGATTATCCTAAA+TGG | + | chr4.4:31860181-31860200 | None:intergenic | 25.0% |
| ! | TAGAGACTAAATTAAAAACG+TGG | - | chr4.4:31859170-31859189 | MS.gene006632:intron | 25.0% |
| ! | TAGTACAAGACAAATAGTTT+AGG | - | chr4.4:31860435-31860454 | MS.gene006632:intron | 25.0% |
| ! | TATTCTTGGAAAAACTATGA+AGG | - | chr4.4:31860956-31860975 | MS.gene006632:intron | 25.0% |
| ! | TCAATGAAAAATAATTAGGG+TGG | - | chr4.4:31856934-31856953 | MS.gene006632:CDS | 25.0% |
| ! | TGAGTAAATTAAATGAGTTC+GGG | + | chr4.4:31860289-31860308 | None:intergenic | 25.0% |
| ! | TGGCAGTTAAAAATTGATAT+TGG | + | chr4.4:31857520-31857539 | None:intergenic | 25.0% |
| ! | TTATAGGTACTAAAAGTTGA+AGG | + | chr4.4:31857400-31857419 | None:intergenic | 25.0% |
| ! | TTGAGTTTGATAGAAAACTT+TGG | + | chr4.4:31860895-31860914 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr4.4:31857387-31857406 | None:intergenic | 25.0% |
| !! | ACATAAGTTGGCTTAAAAAT+AGG | + | chr4.4:31857447-31857466 | None:intergenic | 25.0% |
| !! | ATTAAAGTAGTTGTGACTTT+TGG | - | chr4.4:31858207-31858226 | MS.gene006632:intron | 25.0% |
| !! | CATAAGTTGGCTTAAAAATA+GGG | + | chr4.4:31857446-31857465 | None:intergenic | 25.0% |
| !! | GATGAATTTGATAACAAATC+TGG | + | chr4.4:31859965-31859984 | None:intergenic | 25.0% |
| !! | GTTTATATGAATATTGGTCT+AGG | - | chr4.4:31859335-31859354 | MS.gene006632:intron | 25.0% |
| !! | GTTTTGTCAAATATCAATGA+GGG | - | chr4.4:31859927-31859946 | MS.gene006632:intron | 25.0% |
| !! | TCTACACTTTCAAACATTTT+TGG | - | chr4.4:31859757-31859776 | MS.gene006632:intron | 25.0% |
| !! | TTTCTATTAGTTTGAACTCA+AGG | + | chr4.4:31860347-31860366 | None:intergenic | 25.0% |
| !!! | ATAGTTTAGGATGCTTTTTA+AGG | - | chr4.4:31860448-31860467 | MS.gene006632:intron | 25.0% |
| !!! | CTCTAAAACATCAAAAGAAA+AGG | + | chr4.4:31858100-31858119 | None:intergenic | 25.0% |
| !!! | TCTTTTGATGTTTTAGCTAT+TGG | + | chr4.4:31858324-31858343 | None:intergenic | 25.0% |
| !!! | TGACTTTCTGTTGATTTTAT+AGG | + | chr4.4:31860041-31860060 | None:intergenic | 25.0% |
| !!! | TGATGCTATTATTGTTTTGA+GGG | + | chr4.4:31856518-31856537 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTATACAACCGTA+TGG | + | chr4.4:31859618-31859637 | None:intergenic | 25.0% |
| !!! | TTTTTTGTAACCTTTCAACT+TGG | + | chr4.4:31860754-31860773 | None:intergenic | 25.0% |
| AAACAATAATAGCATCACAG+TGG | - | chr4.4:31856521-31856540 | MS.gene006632:CDS | 30.0% | |
| AAAGCCAGAGAAAACAAATT+GGG | - | chr4.4:31860809-31860828 | MS.gene006632:intron | 30.0% | |
| AGCTTGATAAATAAGAAGCT+AGG | + | chr4.4:31860509-31860528 | None:intergenic | 30.0% | |
| AGGGACTAAATTTAATGACT+AGG | - | chr4.4:31856742-31856761 | MS.gene006632:CDS | 30.0% | |
| ATCAAAAGAAAAGGAATGGA+GGG | - | chr4.4:31858335-31858354 | MS.gene006632:intron | 30.0% | |
| ATCAAAAGAAAAGGAATGGA+GGG | + | chr4.4:31858354-31858335 | None:intergenic | 30.0% | |
| ATCTCCATTTACTCCATTTA+AGG | - | chr4.4:31860190-31860209 | MS.gene006632:intron | 30.0% | |
| ATGAAAAATAATTAGGGTGG+TGG | - | chr4.4:31856937-31856956 | MS.gene006632:CDS | 30.0% | |
| CAAACCTTAAATGGAGTAAA+TGG | + | chr4.4:31860197-31860216 | None:intergenic | 30.0% | |
| CAGGTTCCTTAATTAAAACT+TGG | - | chr4.4:31856609-31856628 | MS.gene006632:CDS | 30.0% | |
| CATAATATATGCAATGTTCG+AGG | + | chr4.4:31858810-31858829 | None:intergenic | 30.0% | |
| CATTAAAATAGCAATGCCAT+GGG | + | chr4.4:31860018-31860037 | None:intergenic | 30.0% | |
| CTTGTACTTTACACAAACTA+TGG | - | chr4.4:31860777-31860796 | MS.gene006632:intron | 30.0% | |
| GGCTAATAATAATGGTTAAG+AGG | - | chr4.4:31857983-31858002 | MS.gene006632:intron | 30.0% | |
| TCAAGAGATTCTTGAACATT+TGG | - | chr4.4:31857011-31857030 | MS.gene006632:CDS | 30.0% | |
| TTAATTAAGGAACCTGATCT+TGG | + | chr4.4:31856605-31856624 | None:intergenic | 30.0% | |
| ! | AATTTGATAACAAATCTGGG+TGG | + | chr4.4:31859961-31859980 | None:intergenic | 30.0% |
| ! | ATATGAATATTGGTCTAGGT+GGG | - | chr4.4:31859339-31859358 | MS.gene006632:intron | 30.0% |
| ! | ATTATGGTGTTTTCCAACAA+GGG | + | chr4.4:31858185-31858204 | None:intergenic | 30.0% |
| ! | ATTTTTCTTATGTTGCGGTT+TGG | - | chr4.4:31859545-31859564 | MS.gene006632:intron | 30.0% |
| ! | CATAGTTTGTGTAAAGTACA+AGG | + | chr4.4:31860779-31860798 | None:intergenic | 30.0% |
| ! | CATTTACTCCATTTAAGGTT+TGG | - | chr4.4:31860195-31860214 | MS.gene006632:intron | 30.0% |
| ! | CGTTGAAGTAACATTTTTGT+AGG | - | chr4.4:31857872-31857891 | MS.gene006632:intron | 30.0% |
| ! | GTTTGAAAGTGTAGAGTTAT+GGG | + | chr4.4:31859752-31859771 | None:intergenic | 30.0% |
| ! | TACAACAATTCCAAGTTGAA+AGG | - | chr4.4:31860741-31860760 | MS.gene006632:intron | 30.0% |
| ! | TATATGAATATTGGTCTAGG+TGG | - | chr4.4:31859338-31859357 | MS.gene006632:intron | 30.0% |
| ! | TGTTTGAAAGTGTAGAGTTA+TGG | + | chr4.4:31859753-31859772 | None:intergenic | 30.0% |
| ! | TTACGGTTTTTCTATTGGAT+TGG | - | chr4.4:31859697-31859716 | MS.gene006632:intron | 30.0% |
| ! | TTCTATTTTCTTTTTGTGCG+TGG | - | chr4.4:31857579-31857598 | MS.gene006632:intron | 30.0% |
| ! | TTTTACCTGTTTTATGCCAA+CGG | + | chr4.4:31860710-31860729 | None:intergenic | 30.0% |
| ! | TTTTATACAACCGTATGGTT+TGG | + | chr4.4:31859613-31859632 | None:intergenic | 30.0% |
| !! | GGTTTTGTCAAATATCAATG+AGG | - | chr4.4:31859926-31859945 | MS.gene006632:intron | 30.0% |
| !! | GTGATGCTATTATTGTTTTG+AGG | + | chr4.4:31856519-31856538 | None:intergenic | 30.0% |
| !!! | AATGGATTAGAACTTTTGAC+CGG | + | chr4.4:31858055-31858074 | None:intergenic | 30.0% |
| !!! | GGCAAACCAAGTTTTAATTA+AGG | + | chr4.4:31856618-31856637 | None:intergenic | 30.0% |
| !!! | GTTTTTCTATTGGATTGGTT+CGG | - | chr4.4:31859702-31859721 | MS.gene006632:intron | 30.0% |
| !!! | TGTTTTTTCATCTTGCAGTT+CGG | + | chr4.4:31858937-31858956 | None:intergenic | 30.0% |
| AAAACTATGAAGGGTCAAAG+TGG | - | chr4.4:31860966-31860985 | MS.gene006632:intron | 35.0% | |
| AAACCACAAAAAACCGCATT+TGG | + | chr4.4:31859658-31859677 | None:intergenic | 35.0% | |
| AAACTATGAAGGGTCAAAGT+GGG | - | chr4.4:31860967-31860986 | MS.gene006632:intron | 35.0% | |
| AACTCAAGGAATCAAGTCTT+TGG | + | chr4.4:31860333-31860352 | None:intergenic | 35.0% | |
| AACTTGGAATTGTTGTAGAC+TGG | + | chr4.4:31860738-31860757 | None:intergenic | 35.0% | |
| AATAATAGCATCACAGTGGA+TGG | - | chr4.4:31856525-31856544 | MS.gene006632:CDS | 35.0% | |
| AATGGCAAAAACAGTACTAG+TGG | - | chr4.4:31861002-31861021 | MS.gene006632:intron | 35.0% | |
| ACAAAAAACCGCATTTGGTT+TGG | + | chr4.4:31859653-31859672 | None:intergenic | 35.0% | |
| ACAAATGCGGTTTATTGGAT+TGG | - | chr4.4:31859001-31859020 | MS.gene006632:intron | 35.0% | |
| ACATGTGGTCATCATATCAA+AGG | - | chr4.4:31856579-31856598 | MS.gene006632:CDS | 35.0% | |
| ACCAAACAAATGCGGTTTAT+TGG | - | chr4.4:31858996-31859015 | MS.gene006632:intron | 35.0% | |
| AGTGATGAAGAAGAGAAAGA+AGG | - | chr4.4:31860855-31860874 | MS.gene006632:intron | 35.0% | |
| ATGGGGGATAAATTCTAAAC+CGG | - | chr4.4:31859891-31859910 | MS.gene006632:intron | 35.0% | |
| ATGTATTCGTGTCAGATACA+TGG | + | chr4.4:31858729-31858748 | None:intergenic | 35.0% | |
| ATTAGAACTTGTCTCACATG+TGG | - | chr4.4:31856564-31856583 | MS.gene006632:CDS | 35.0% | |
| CATCAAAAGAAAAGGAATGG+AGG | - | chr4.4:31858334-31858353 | MS.gene006632:intron | 35.0% | |
| CATCAAAAGAAAAGGAATGG+AGG | + | chr4.4:31858353-31858334 | None:intergenic | 35.0% | |
| CTGCAAGATGAAAAAACATG+CGG | - | chr4.4:31858939-31858958 | MS.gene006632:intron | 35.0% | |
| CTTAGCTTCAAATATACCCA+TGG | - | chr4.4:31859999-31860018 | MS.gene006632:intron | 35.0% | |
| GAAAGCCAGAGAAAACAAAT+TGG | - | chr4.4:31860808-31860827 | MS.gene006632:intron | 35.0% | |
| GAATACATCCAAACCAAATG+CGG | - | chr4.4:31859642-31859661 | MS.gene006632:intron | 35.0% | |
| GCATTAAAATAGCAATGCCA+TGG | + | chr4.4:31860019-31860038 | None:intergenic | 35.0% | |
| GGATGAACTCATCAATTAGA+GGG | + | chr4.4:31857071-31857090 | None:intergenic | 35.0% | |
| TAAATGGAGCTTAGCCTAAA+TGG | - | chr4.4:31860257-31860276 | MS.gene006632:intron | 35.0% | |
| TATATACCTGGTAGTTTCTC+TGG | + | chr4.4:31857132-31857151 | None:intergenic | 35.0% | |
| TCAAGAATCTCTTGATCTGT+AGG | + | chr4.4:31857006-31857025 | None:intergenic | 35.0% | |
| TCCAATAAACCGCATTTGTT+TGG | + | chr4.4:31859000-31859019 | None:intergenic | 35.0% | |
| TCTTGAACATTTGGAAGCAA+AGG | - | chr4.4:31857020-31857039 | MS.gene006632:CDS | 35.0% | |
| TCTTGCATCCAAACCTTAAA+TGG | + | chr4.4:31860206-31860225 | None:intergenic | 35.0% | |
| TGATGCATCAGTATCATCTT+GGG | - | chr4.4:31860832-31860851 | MS.gene006632:intron | 35.0% | |
| TGTTAATTCACTACTGCAGA+TGG | + | chr4.4:31860547-31860566 | None:intergenic | 35.0% | |
| TTCATGTTGCTGAAGTCTAA+AGG | + | chr4.4:31857832-31857851 | None:intergenic | 35.0% | |
| TTGAATAACATGGTCAGAAG+TGG | - | chr4.4:31857802-31857821 | MS.gene006632:intron | 35.0% | |
| TTTCTCAAGTTTACCCTTGT+TGG | - | chr4.4:31858169-31858188 | MS.gene006632:intron | 35.0% | |
| ! | ACTTTTGACCGGTTGTTTAA+AGG | + | chr4.4:31858044-31858063 | None:intergenic | 35.0% |
| ! | AGCTATTGGCACAAGTTTTA+AGG | + | chr4.4:31858310-31858329 | None:intergenic | 35.0% |
| ! | CATTTTCTCCTTCAAGAGTA+GGG | + | chr4.4:31857092-31857111 | None:intergenic | 35.0% |
| ! | CATTTTTGTAGGAGAAGATG+TGG | - | chr4.4:31857883-31857902 | MS.gene006632:intron | 35.0% |
| ! | CTTTTGACCGGTTGTTTAAA+GGG | + | chr4.4:31858043-31858062 | None:intergenic | 35.0% |
| ! | GAGGGAGTAGTTTTTAACAA+TGG | + | chr4.4:31858073-31858092 | None:intergenic | 35.0% |
| ! | GATTATGGTGTTTTCCAACA+AGG | + | chr4.4:31858186-31858205 | None:intergenic | 35.0% |
| ! | TCGGTTTACGGTTTTTCTAT+TGG | - | chr4.4:31859692-31859711 | MS.gene006632:intron | 35.0% |
| ! | TTTACCTGTTTTATGCCAAC+GGG | + | chr4.4:31860709-31860728 | None:intergenic | 35.0% |
| ! | TTTGTGGTTTCGGTTTGAAT+TGG | - | chr4.4:31859668-31859687 | MS.gene006632:intron | 35.0% |
| ! | TTTTGACCGGTTGTTTAAAG+GGG | + | chr4.4:31858042-31858061 | None:intergenic | 35.0% |
| !! | ATCACCCAATTTGTTTTCTC+TGG | + | chr4.4:31860816-31860835 | None:intergenic | 35.0% |
| !! | GCATTTGGTTTGGATGTATT+CGG | + | chr4.4:31859643-31859662 | None:intergenic | 35.0% |
| !! | GTTTATTGGATTGGTTTGTG+CGG | - | chr4.4:31859010-31859029 | MS.gene006632:intron | 35.0% |
| !! | GTTTGAATTGGTTCGGTTTA+CGG | - | chr4.4:31859680-31859699 | MS.gene006632:intron | 35.0% |
| !! | TTTATTGGATTGGTTTGTGC+GGG | - | chr4.4:31859011-31859030 | MS.gene006632:intron | 35.0% |
| !!! | AAACCAAATGCGGTTTTTTG+TGG | - | chr4.4:31859652-31859671 | MS.gene006632:intron | 35.0% |
| !!! | AATGCGGTTTTTTGTGGTTT+CGG | - | chr4.4:31859658-31859677 | MS.gene006632:intron | 35.0% |
| !!! | AGGATGCTTTTTAAGGTTGA+TGG | - | chr4.4:31860455-31860474 | MS.gene006632:intron | 35.0% |
| !!! | ATCACTCATTTTGAAGTGTC+GGG | - | chr4.4:31858747-31858766 | MS.gene006632:intron | 35.0% |
| !!! | CATCACTCATTTTGAAGTGT+CGG | - | chr4.4:31858746-31858765 | MS.gene006632:intron | 35.0% |
| !!! | GGGTTCATAGATTTTTTTGG+TGG | - | chr4.4:31858769-31858788 | MS.gene006632:intron | 35.0% |
| !!! | TATTGGCACAAGTTTTAAGG+AGG | + | chr4.4:31858307-31858326 | None:intergenic | 35.0% |
| AACATTTGGAAGCAAAGGTG+AGG | - | chr4.4:31857025-31857044 | MS.gene006632:CDS | 40.0% | |
| ACATCCAGTGAAATTCTCAC+TGG | - | chr4.4:31859479-31859498 | MS.gene006632:intron | 40.0% | |
| AGTGGGAATGAGGTAATCAA+TGG | - | chr4.4:31860984-31861003 | MS.gene006632:intron | 40.0% | |
| ATCAGACCCCTTTAAACAAC+CGG | - | chr4.4:31858033-31858052 | MS.gene006632:intron | 40.0% | |
| CAAAACCAAGTTTCAGTGAC+CGG | + | chr4.4:31859913-31859932 | None:intergenic | 40.0% | |
| CCTACTCTTGAAGGAGAAAA+TGG | - | chr4.4:31857090-31857109 | MS.gene006632:intron | 40.0% | |
| GGGATGAACTCATCAATTAG+AGG | + | chr4.4:31857072-31857091 | None:intergenic | 40.0% | |
| GGTGGAATTAATGACTTACC+TGG | - | chr4.4:31856955-31856974 | MS.gene006632:CDS | 40.0% | |
| GTGATGCATCAGTATCATCT+TGG | - | chr4.4:31860831-31860850 | MS.gene006632:intron | 40.0% | |
| TCATATCAAAGGCCAAGATC+AGG | - | chr4.4:31856590-31856609 | MS.gene006632:CDS | 40.0% | |
| TCTTCAGGAGTAAGCAAAGA+TGG | - | chr4.4:31860585-31860604 | MS.gene006632:CDS | 40.0% | |
| TGATAACAAATCTGGGTGGA+GGG | + | chr4.4:31859957-31859976 | None:intergenic | 40.0% | |
| ! | AAAAGTACATTCGGATCACG+AGG | - | chr4.4:31860671-31860690 | MS.gene006632:intron | 40.0% |
| ! | CCATTTTCTCCTTCAAGAGT+AGG | + | chr4.4:31857093-31857112 | None:intergenic | 40.0% |
| ! | GAGCATTGCTAGATCTATGT+TGG | + | chr4.4:31861079-31861098 | None:intergenic | 40.0% |
| ! | GGTTTCGGTTTGAATTGGTT+CGG | - | chr4.4:31859673-31859692 | MS.gene006632:intron | 40.0% |
| ! | TGAACTTAGCTCAGTTGGTA+GGG | + | chr4.4:31858839-31858858 | None:intergenic | 40.0% |
| ! | TTGATAACAAATCTGGGTGG+AGG | + | chr4.4:31859958-31859977 | None:intergenic | 40.0% |
| !! | ATATAAACTAGGGGTGTTCG+CGG | - | chr4.4:31858877-31858896 | MS.gene006632:intron | 40.0% |
| !! | GATCTTTAGAGCATAGACGT+CGG | + | chr4.4:31859784-31859803 | None:intergenic | 40.0% |
| !! | TACAACCGTATGGTTTGGTT+CGG | + | chr4.4:31859608-31859627 | None:intergenic | 40.0% |
| !! | TCTTATGTTGCGGTTTGGTT+CGG | - | chr4.4:31859550-31859569 | MS.gene006632:intron | 40.0% |
| !!! | CGGGGGTTCATAGATTTTTT+TGG | - | chr4.4:31858766-31858785 | MS.gene006632:intron | 40.0% |
| !!! | TCACTCATTTTGAAGTGTCG+GGG | - | chr4.4:31858748-31858767 | MS.gene006632:intron | 40.0% |
| ACCAACTGAGCTAAGTTCAC+AGG | - | chr4.4:31858840-31858859 | MS.gene006632:intron | 45.0% | |
| ACTCATCCAGAGAAACTACC+AGG | - | chr4.4:31857123-31857142 | MS.gene006632:intron | 45.0% | |
| AGGTTTGGATGCAAGACATG+TGG | - | chr4.4:31860210-31860229 | MS.gene006632:intron | 45.0% | |
| AGTTCGGGTATGCTCCATTT+AGG | - | chr4.4:31860164-31860183 | MS.gene006632:intron | 45.0% | |
| CAAACTCAACCAAGACAGTG+TGG | - | chr4.4:31860906-31860925 | MS.gene006632:intron | 45.0% | |
| CAGTGAAATTCTCACTGGAG+AGG | - | chr4.4:31859484-31859503 | MS.gene006632:intron | 45.0% | |
| CATCACAGTGGATGGAAGAA+AGG | - | chr4.4:31856533-31856552 | MS.gene006632:CDS | 45.0% | |
| CCAACTGAGCTAAGTTCACA+GGG | - | chr4.4:31858841-31858860 | MS.gene006632:intron | 45.0% | |
| CTAAACCGGTCACTGAAACT+TGG | - | chr4.4:31859905-31859924 | MS.gene006632:intron | 45.0% | |
| CTCTCCAGTGAGAATTTCAC+TGG | + | chr4.4:31859486-31859505 | None:intergenic | 45.0% | |
| GAAACCCGTTGGCATAAAAC+AGG | - | chr4.4:31860702-31860721 | MS.gene006632:intron | 45.0% | |
| GAACATATGTCACCTAGACC+AGG | + | chr4.4:31859518-31859537 | None:intergenic | 45.0% | |
| GAATTACCACCACACTGTCT+TGG | + | chr4.4:31860918-31860937 | None:intergenic | 45.0% | |
| GAGTTCATCCCTACTCTTGA+AGG | - | chr4.4:31857081-31857100 | MS.gene006632:intron | 45.0% | |
| GCAAACCGAACCAAACCATA+CGG | - | chr4.4:31859600-31859619 | MS.gene006632:intron | 45.0% | |
| GTGAACTTAGCTCAGTTGGT+AGG | + | chr4.4:31858840-31858859 | None:intergenic | 45.0% | |
| TGATCCGCCATTTCTTTCAC+CGG | - | chr4.4:31860610-31860629 | MS.gene006632:CDS | 45.0% | |
| TGTTCCTGTTGTGTATGCCT+TGG | + | chr4.4:31860640-31860659 | None:intergenic | 45.0% | |
| TTGAATGGAGAGGATCTCAC+TGG | + | chr4.4:31859393-31859412 | None:intergenic | 45.0% | |
| ! | AATATTGGTCTAGGTGGGAG+GGG | - | chr4.4:31859344-31859363 | MS.gene006632:intron | 45.0% |
| ! | GAATATTGGTCTAGGTGGGA+GGG | - | chr4.4:31859343-31859362 | MS.gene006632:intron | 45.0% |
| ! | TGAATATTGGTCTAGGTGGG+AGG | - | chr4.4:31859342-31859361 | MS.gene006632:intron | 45.0% |
| !! | CGGTTTGGTTCGGTTTAGTT+CGG | - | chr4.4:31859560-31859579 | MS.gene006632:intron | 45.0% |
| !! | GTATGGTTTGGTTCGGTTTG+CGG | + | chr4.4:31859601-31859620 | None:intergenic | 45.0% |
| !! | TGCGGTTTAGTTCGGTTTTG+AGG | - | chr4.4:31858900-31858919 | MS.gene006632:intron | 45.0% |
| !!! | CACTCATTTTGAAGTGTCGG+GGG | - | chr4.4:31858749-31858768 | MS.gene006632:intron | 45.0% |
| !! | TATATATATATATATAGATA+AGG | + | chr4.4:31857293-31857312 | None:intergenic | 5.0% |
| !!! | AATATGAATTTTTATATTTT+TGG | + | chr4.4:31857540-31857559 | None:intergenic | 5.0% |
| !!! | TAATTTATAAATGATATTTT+AGG | + | chr4.4:31858482-31858501 | None:intergenic | 5.0% |
| ACTCAACCAAGACAGTGTGG+TGG | - | chr4.4:31860909-31860928 | MS.gene006632:intron | 50.0% | |
| AGTTCGGGCATGCTCCATTT+AGG | + | chr4.4:31860274-31860293 | None:intergenic | 50.0% | |
| ATGGCCGGTGAAAGAAATGG+CGG | + | chr4.4:31860617-31860636 | None:intergenic | 50.0% | |
| ATGTCACCTAGACCAGGACT+TGG | + | chr4.4:31859512-31859531 | None:intergenic | 50.0% | |
| CCATCCAAGGCATACACAAC+AGG | - | chr4.4:31860633-31860652 | MS.gene006632:CDS | 50.0% | |
| CCCTGTGAACTTAGCTCAGT+TGG | + | chr4.4:31858844-31858863 | None:intergenic | 50.0% | |
| CCTGTTGTGTATGCCTTGGA+TGG | + | chr4.4:31860636-31860655 | None:intergenic | 50.0% | |
| GAAGGGTCAAAGTGGGAATG+AGG | - | chr4.4:31860974-31860993 | MS.gene006632:intron | 50.0% | |
| GGATCAAACTTCACTCCAGC+TGG | + | chr4.4:31856985-31857004 | None:intergenic | 50.0% | |
| GTACATTCGGATCACGAGGA+CGG | - | chr4.4:31860675-31860694 | MS.gene006632:intron | 50.0% | |
| TGGATGGCCGGTGAAAGAAA+TGG | + | chr4.4:31860620-31860639 | None:intergenic | 50.0% | |
| TTGTGTATGCCTTGGATGGC+CGG | + | chr4.4:31860632-31860651 | None:intergenic | 50.0% | |
| TTTCTTTCACCGGCCATCCA+AGG | - | chr4.4:31860620-31860639 | MS.gene006632:CDS | 50.0% | |
| !! | GGTGAAAGAAATGGCGGATC+AGG | + | chr4.4:31860611-31860630 | None:intergenic | 50.0% |
| ACTGGAGAGGATCCAAGTCC+TGG | - | chr4.4:31859497-31859516 | MS.gene006632:intron | 55.0% | |
| AGGGGATTCTCTCCTGTGAC+TGG | - | chr4.4:31859362-31859381 | MS.gene006632:intron | 55.0% | |
| GACTTACCTGGATTGCCAGC+TGG | - | chr4.4:31856967-31856986 | MS.gene006632:CDS | 55.0% | |
| GAGGATCCAAGTCCTGGTCT+AGG | - | chr4.4:31859503-31859522 | MS.gene006632:intron | 55.0% | |
| GTTCGCGGTGCGGTTTAGTT+CGG | - | chr4.4:31858892-31858911 | MS.gene006632:intron | 55.0% | |
| TCACTGGACTCTCCAGTCAC+AGG | + | chr4.4:31859377-31859396 | None:intergenic | 55.0% | |
| TTCACTCCAGCTGGCAATCC+AGG | + | chr4.4:31856976-31856995 | None:intergenic | 55.0% | |
| AGGACGGAAGCGAAACCCGT+TGG | - | chr4.4:31860691-31860710 | MS.gene006632:intron | 60.0% | |
| !! | AACTAGGGGTGTTCGCGGTG+CGG | - | chr4.4:31858882-31858901 | MS.gene006632:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 31856498 | 31861139 | 31856498 | ID=MS.gene006632 |
| chr4.4 | mRNA | 31856498 | 31861139 | 31856498 | ID=MS.gene006632.t1;Parent=MS.gene006632 |
| chr4.4 | exon | 31861026 | 31861139 | 31861026 | ID=MS.gene006632.t1.exon1;Parent=MS.gene006632.t1 |
| chr4.4 | CDS | 31861026 | 31861139 | 31861026 | ID=cds.MS.gene006632.t1;Parent=MS.gene006632.t1 |
| chr4.4 | exon | 31860493 | 31860685 | 31860493 | ID=MS.gene006632.t1.exon2;Parent=MS.gene006632.t1 |
| chr4.4 | CDS | 31860493 | 31860685 | 31860493 | ID=cds.MS.gene006632.t1;Parent=MS.gene006632.t1 |
| chr4.4 | exon | 31856498 | 31857045 | 31856498 | ID=MS.gene006632.t1.exon3;Parent=MS.gene006632.t1 |
| chr4.4 | CDS | 31856498 | 31857045 | 31856498 | ID=cds.MS.gene006632.t1;Parent=MS.gene006632.t1 |
| Gene Sequence |
| Protein sequence |
