Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006670.t1 | XP_003607555.1 | 96.7 | 336 | 10 | 1 | 1 | 336 | 1 | 335 | 2.20E-181 | 644.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006670.t1 | Q9MAH8 | 35.6 | 365 | 189 | 11 | 5 | 332 | 31 | 386 | 5.3e-35 | 149.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006670.t1 | G7ZZY9 | 96.7 | 336 | 10 | 1 | 1 | 336 | 1 | 335 | 1.6e-181 | 644.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene006670.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006670.t1 | MTR_4g079580 | 96.726 | 336 | 10 | 1 | 1 | 336 | 1 | 335 | 0.0 | 670 |
| MS.gene006670.t1 | MTR_2g090960 | 53.198 | 344 | 121 | 13 | 1 | 329 | 3 | 321 | 4.25e-104 | 308 |
| MS.gene006670.t1 | MTR_8g463380 | 35.821 | 402 | 179 | 9 | 3 | 332 | 34 | 428 | 1.25e-51 | 177 |
| MS.gene006670.t1 | MTR_2g078200 | 79.762 | 84 | 17 | 0 | 6 | 89 | 3 | 86 | 5.92e-44 | 153 |
| MS.gene006670.t1 | MTR_7g015010 | 58.442 | 77 | 32 | 0 | 17 | 93 | 51 | 127 | 4.95e-24 | 101 |
| MS.gene006670.t1 | MTR_6g015350 | 60.000 | 80 | 29 | 1 | 17 | 96 | 43 | 119 | 1.78e-21 | 93.6 |
| MS.gene006670.t1 | MTR_4g109660 | 56.522 | 69 | 30 | 0 | 16 | 84 | 49 | 117 | 1.45e-19 | 87.8 |
| MS.gene006670.t1 | MTR_3g026050 | 30.870 | 230 | 114 | 7 | 17 | 205 | 51 | 276 | 1.53e-19 | 89.0 |
| MS.gene006670.t1 | MTR_6g017055 | 48.148 | 81 | 41 | 1 | 3 | 83 | 107 | 186 | 1.03e-17 | 84.0 |
| MS.gene006670.t1 | MTR_1g103380 | 55.000 | 60 | 27 | 0 | 23 | 82 | 201 | 260 | 2.88e-16 | 79.7 |
| MS.gene006670.t1 | MTR_4g111935 | 45.000 | 80 | 43 | 1 | 3 | 82 | 113 | 191 | 6.01e-15 | 75.5 |
| MS.gene006670.t1 | MTR_7g018500 | 53.448 | 58 | 27 | 0 | 25 | 82 | 122 | 179 | 1.37e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006670.t1 | AT2G31070 | 35.657 | 373 | 136 | 14 | 5 | 316 | 11 | 340 | 2.97e-48 | 166 |
| MS.gene006670.t1 | AT1G53230 | 37.158 | 366 | 182 | 13 | 5 | 332 | 31 | 386 | 3.27e-48 | 167 |
| MS.gene006670.t1 | AT1G53230 | 37.158 | 366 | 182 | 13 | 5 | 332 | 31 | 386 | 3.27e-48 | 167 |
| MS.gene006670.t1 | AT3G15030 | 33.584 | 399 | 183 | 12 | 5 | 332 | 27 | 414 | 5.31e-47 | 164 |
| MS.gene006670.t1 | AT3G15030 | 33.584 | 399 | 183 | 12 | 5 | 332 | 27 | 414 | 5.31e-47 | 164 |
| MS.gene006670.t1 | AT3G15030 | 33.584 | 399 | 183 | 12 | 5 | 332 | 27 | 414 | 5.31e-47 | 164 |
| MS.gene006670.t1 | AT3G15030 | 33.584 | 399 | 183 | 12 | 5 | 332 | 27 | 414 | 5.31e-47 | 164 |
| MS.gene006670.t1 | AT4G18390 | 58.163 | 98 | 30 | 3 | 17 | 109 | 36 | 127 | 9.46e-26 | 106 |
| MS.gene006670.t1 | AT4G18390 | 58.163 | 98 | 30 | 3 | 17 | 109 | 36 | 127 | 9.46e-26 | 106 |
| MS.gene006670.t1 | AT1G30210 | 63.768 | 69 | 25 | 0 | 16 | 84 | 43 | 111 | 3.52e-22 | 95.5 |
| MS.gene006670.t1 | AT1G30210 | 63.768 | 69 | 25 | 0 | 16 | 84 | 43 | 111 | 3.52e-22 | 95.5 |
| MS.gene006670.t1 | AT3G02150 | 62.319 | 69 | 26 | 0 | 17 | 85 | 68 | 136 | 1.37e-21 | 93.2 |
| MS.gene006670.t1 | AT3G02150 | 62.319 | 69 | 26 | 0 | 17 | 85 | 68 | 136 | 2.38e-21 | 93.6 |
| MS.gene006670.t1 | AT5G60970 | 55.696 | 79 | 31 | 2 | 17 | 94 | 57 | 132 | 7.69e-20 | 89.7 |
| MS.gene006670.t1 | AT5G08070 | 51.220 | 82 | 37 | 1 | 17 | 95 | 27 | 108 | 1.17e-19 | 87.0 |
| MS.gene006670.t1 | AT5G08070 | 51.220 | 82 | 37 | 1 | 17 | 95 | 27 | 108 | 1.17e-19 | 87.0 |
| MS.gene006670.t1 | AT1G68800 | 53.846 | 65 | 30 | 0 | 19 | 83 | 108 | 172 | 2.15e-18 | 85.5 |
| MS.gene006670.t1 | AT1G68800 | 53.846 | 65 | 30 | 0 | 19 | 83 | 108 | 172 | 2.29e-18 | 85.1 |
| MS.gene006670.t1 | AT1G67260 | 50.000 | 66 | 33 | 0 | 18 | 83 | 82 | 147 | 1.54e-17 | 82.8 |
| MS.gene006670.t1 | AT1G67260 | 50.000 | 66 | 33 | 0 | 18 | 83 | 82 | 147 | 1.54e-17 | 82.8 |
| MS.gene006670.t1 | AT1G67260 | 50.000 | 66 | 33 | 0 | 18 | 83 | 82 | 147 | 1.91e-17 | 82.8 |
| MS.gene006670.t1 | AT3G18550 | 49.231 | 65 | 33 | 0 | 18 | 82 | 143 | 207 | 2.17e-14 | 73.9 |
| MS.gene006670.t1 | AT3G18550 | 49.231 | 65 | 33 | 0 | 18 | 82 | 143 | 207 | 2.17e-14 | 73.9 |
| MS.gene006670.t1 | AT3G18550 | 49.231 | 65 | 33 | 0 | 18 | 82 | 143 | 207 | 2.30e-14 | 73.9 |
| MS.gene006670.t1 | AT3G18550 | 49.231 | 65 | 33 | 0 | 18 | 82 | 143 | 207 | 2.35e-14 | 73.9 |
Find 70 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCATCAAGCTTCAATCTT+TGG | 0.193207 | 4.1:+26613049 | MS.gene006670:CDS |
| AATTCTCAATTCTATGATAT+TGG | 0.253929 | 4.1:-26612829 | None:intergenic |
| AGGAGAAGAAGAAGGTCTTT+TGG | 0.325634 | 4.1:-26613155 | None:intergenic |
| GTGAAATGAAAGTTGAATTA+TGG | 0.327131 | 4.1:-26612589 | None:intergenic |
| TATAAAGAAAGTTGGATTCA+TGG | 0.328597 | 4.1:+26612877 | MS.gene006670:CDS |
| TGTCCACCTTGAACTGTATC+AGG | 0.337666 | 4.1:-26613112 | None:intergenic |
| AACTTTCTTTATATAATCAT+TGG | 0.342032 | 4.1:-26612867 | None:intergenic |
| TTCGACTGAAGGGCCTCATT+TGG | 0.352467 | 4.1:-26612947 | None:intergenic |
| AGCCAATCCATTGCTTTGCT+TGG | 0.356196 | 4.1:-26612365 | None:intergenic |
| GAATGAAACCATTGTGATCT+TGG | 0.357259 | 4.1:-26612727 | None:intergenic |
| GAAGTAGGGATGAGGAGTAC+TGG | 0.386702 | 4.1:+26612170 | None:intergenic |
| GTAGTTGGAAAGAAAGGTAT+AGG | 0.386721 | 4.1:-26612632 | None:intergenic |
| TGCATTCCTGATACAGTTCA+AGG | 0.398078 | 4.1:+26613106 | MS.gene006670:CDS |
| GGAGAGATAGTTCAGGTAGA+AGG | 0.398765 | 4.1:+26612197 | MS.gene006670:CDS |
| TAGAAGGAGGACACATAGTT+CGG | 0.402620 | 4.1:+26612213 | MS.gene006670:CDS |
| GGAAGCAGGTTTGTTTCTGA+TGG | 0.414475 | 4.1:+26613070 | MS.gene006670:CDS |
| TTTGTTTCTGATGGATTAGC+AGG | 0.421645 | 4.1:+26613079 | MS.gene006670:CDS |
| AATATCATAGAATTGAGAAT+TGG | 0.422183 | 4.1:+26612831 | MS.gene006670:CDS |
| AACTTTGCTCAGTTGTGGTT+AGG | 0.425546 | 4.1:-26613175 | None:intergenic |
| GAAGAGGTAGTTGGAAAGAA+AGG | 0.436289 | 4.1:-26612638 | None:intergenic |
| AATGATTATATAAAGAAAGT+TGG | 0.442550 | 4.1:+26612869 | MS.gene006670:CDS |
| AGGGTAGTTCTGAAAATTGA+TGG | 0.446306 | 4.1:-26612672 | None:intergenic |
| AAGCTTCAATCTTTGGAAGC+AGG | 0.461093 | 4.1:+26613056 | MS.gene006670:CDS |
| TGGAGGAGGAGAGATAGTTC+AGG | 0.462988 | 4.1:+26612190 | MS.gene006670:CDS |
| CAAAAGGTCCTCGTGATCGC+AGG | 0.468784 | 4.1:+26612276 | MS.gene006670:CDS |
| ATCACAATGGTTTCATTCCA+TGG | 0.469357 | 4.1:+26612732 | MS.gene006670:CDS |
| GGAGAAACATCAGAATCTAA+TGG | 0.478617 | 4.1:+26612521 | MS.gene006670:CDS |
| GATGAAGTAGAAGAGGTAGT+TGG | 0.480377 | 4.1:-26612647 | None:intergenic |
| AGAAGGAGGACACATAGTTC+GGG | 0.484476 | 4.1:+26612214 | MS.gene006670:CDS |
| AGCAAGGTTTACACATCAAA+AGG | 0.489089 | 4.1:+26612260 | MS.gene006670:CDS |
| AACTCAAGTGGAATGGTTGT+TGG | 0.490485 | 4.1:+26612500 | MS.gene006670:CDS |
| CTTCAGAGGTTCATCATCAC+AGG | 0.503181 | 4.1:+26613017 | MS.gene006670:CDS |
| GGATCAGTTTCAACATTATG+TGG | 0.505424 | 4.1:-26612611 | None:intergenic |
| AAGCTCCGCGAGCTTGTCAA+TGG | 0.510986 | 4.1:-26612408 | None:intergenic |
| GGGATGAGGAGTACTGGAGG+AGG | 0.516880 | 4.1:+26612176 | None:intergenic |
| TCCTATGGATTCTTCTTCAG+AGG | 0.520790 | 4.1:+26613003 | MS.gene006670:CDS |
| GACCAAGCAAAGCAATGGAT+TGG | 0.527223 | 4.1:+26612363 | MS.gene006670:CDS |
| AGGAATGAAGAGAGAGGCCA+AGG | 0.528264 | 4.1:-26612703 | None:intergenic |
| CTTCCTCCATGGCATCCAAT+CGG | 0.535397 | 4.1:+26612428 | MS.gene006670:CDS |
| TAGAAAACTTTGCTCAGTTG+TGG | 0.537314 | 4.1:-26613180 | None:intergenic |
| GAAACCATTGTGATCTTGGA+AGG | 0.539513 | 4.1:-26612723 | None:intergenic |
| AATGTAGTTGCAAACTCAAG+TGG | 0.546614 | 4.1:+26612488 | MS.gene006670:CDS |
| GATGGATGATGAAGTAGAAG+AGG | 0.554867 | 4.1:-26612654 | None:intergenic |
| AGACAATTGAGTGAGAATCA+AGG | 0.556151 | 4.1:+26612563 | MS.gene006670:CDS |
| GTAGGGATGAGGAGTACTGG+AGG | 0.556752 | 4.1:+26612173 | None:intergenic |
| AGCTCGCGGAGCTTCCTCCA+TGG | 0.559593 | 4.1:+26612417 | MS.gene006670:CDS |
| AACATGGAATGAGATTCCTA+TGG | 0.565709 | 4.1:+26612988 | MS.gene006670:CDS |
| TTTCGCATTCTGTTAGAACA+TGG | 0.574908 | 4.1:+26612972 | MS.gene006670:CDS |
| ACATTCTGAACTTCTTCTAG+AGG | 0.582575 | 4.1:-26612470 | None:intergenic |
| TTCAGAATACTCTCCAAATG+AGG | 0.589921 | 4.1:+26612934 | MS.gene006670:CDS |
| TGACAGACCAAGCAAAGCAA+TGG | 0.595881 | 4.1:+26612358 | MS.gene006670:CDS |
| ACAGTTCAAGGTGGACAAGA+GGG | 0.596091 | 4.1:+26613118 | MS.gene006670:CDS |
| AAAAGGTCCTCGTGATCGCA+GGG | 0.597089 | 4.1:+26612277 | MS.gene006670:CDS |
| AACTACCCTTCTGAAAACCT+TGG | 0.597609 | 4.1:+26612686 | MS.gene006670:CDS |
| CATACTTGTTGTGATTGCCA+TGG | 0.603271 | 4.1:-26612749 | None:intergenic |
| TACAGTTCAAGGTGGACAAG+AGG | 0.610010 | 4.1:+26613117 | MS.gene006670:CDS |
| TGCTTGGTCTGTCATAGCCG+AGG | 0.612632 | 4.1:-26612349 | None:intergenic |
| TACGATGTTCAAGATCGCCT+CGG | 0.620277 | 4.1:+26612332 | MS.gene006670:CDS |
| CATTCCTTCCAAGATCACAA+TGG | 0.621086 | 4.1:+26612719 | MS.gene006670:CDS |
| AGTCGAACCCTGCGATCACG+AGG | 0.621133 | 4.1:-26612284 | None:intergenic |
| AGTATTCTGAACCTGAACCT+TGG | 0.621967 | 4.1:-26612922 | None:intergenic |
| GAGATAGTTCAGGTAGAAGG+AGG | 0.622890 | 4.1:+26612200 | MS.gene006670:CDS |
| TTGAACATCGTAGAATTCGA+TGG | 0.627660 | 4.1:-26612321 | None:intergenic |
| TTGTGGTTAGGAGAAGAAGA+AGG | 0.640804 | 4.1:-26613163 | None:intergenic |
| CTTGGAAGGAATGAAGAGAG+AGG | 0.651388 | 4.1:-26612709 | None:intergenic |
| TCGCCGATTGGATGCCATGG+AGG | 0.652394 | 4.1:-26612431 | None:intergenic |
| ACCTCTGAAGAAGAATCCAT+AGG | 0.653923 | 4.1:-26613004 | None:intergenic |
| GTCTTCCATTGACAAGCTCG+CGG | 0.658985 | 4.1:+26612403 | MS.gene006670:CDS |
| AGTTGCAAACTCAAGTGGAA+TGG | 0.665604 | 4.1:+26612493 | MS.gene006670:CDS |
| ATTCCTGATACAGTTCAAGG+TGG | 0.774068 | 4.1:+26613109 | MS.gene006670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTTTCTTTATATAATCAT+TGG | - | chr4.1:26612870-26612889 | None:intergenic | 15.0% |
| !! | AATGATTATATAAAGAAAGT+TGG | + | chr4.1:26612869-26612888 | MS.gene006670:CDS | 15.0% |
| !! | AATATCATAGAATTGAGAAT+TGG | + | chr4.1:26612831-26612850 | MS.gene006670:CDS | 20.0% |
| !! | AATTCTCAATTCTATGATAT+TGG | - | chr4.1:26612832-26612851 | None:intergenic | 20.0% |
| ! | GTGAAATGAAAGTTGAATTA+TGG | - | chr4.1:26612592-26612611 | None:intergenic | 25.0% |
| ! | TATAAAGAAAGTTGGATTCA+TGG | + | chr4.1:26612877-26612896 | MS.gene006670:CDS | 25.0% |
| !! | ATTGGTTCTCAAAAAAAGTT+TGG | - | chr4.1:26612814-26612833 | None:intergenic | 25.0% |
| !!! | AAAAAGTTTGGTTTTGGTTT+TGG | - | chr4.1:26612802-26612821 | None:intergenic | 25.0% |
| !!! | TCTCAAAAAAAGTTTGGTTT+TGG | - | chr4.1:26612808-26612827 | None:intergenic | 25.0% |
| !! | GGTTTTCATTTGAAGTTTCA+TGG | - | chr4.1:26612781-26612800 | None:intergenic | 30.0% |
| AACATGGAATGAGATTCCTA+TGG | + | chr4.1:26612988-26613007 | MS.gene006670:CDS | 35.0% | |
| AATGCGAAAAATTCGACTGA+AGG | - | chr4.1:26612961-26612980 | None:intergenic | 35.0% | |
| AATGTAGTTGCAAACTCAAG+TGG | + | chr4.1:26612488-26612507 | MS.gene006670:CDS | 35.0% | |
| ACATTCTGAACTTCTTCTAG+AGG | - | chr4.1:26612473-26612492 | None:intergenic | 35.0% | |
| AGACAATTGAGTGAGAATCA+AGG | + | chr4.1:26612563-26612582 | MS.gene006670:CDS | 35.0% | |
| AGCAAGGTTTACACATCAAA+AGG | + | chr4.1:26612260-26612279 | MS.gene006670:CDS | 35.0% | |
| ATCACAATGGTTTCATTCCA+TGG | + | chr4.1:26612732-26612751 | MS.gene006670:CDS | 35.0% | |
| ATGCGAAAAATTCGACTGAA+GGG | - | chr4.1:26612960-26612979 | None:intergenic | 35.0% | |
| GAATGAAACCATTGTGATCT+TGG | - | chr4.1:26612730-26612749 | None:intergenic | 35.0% | |
| GGAGAAACATCAGAATCTAA+TGG | + | chr4.1:26612521-26612540 | MS.gene006670:CDS | 35.0% | |
| GGATCAGTTTCAACATTATG+TGG | - | chr4.1:26612614-26612633 | None:intergenic | 35.0% | |
| GTTCATCAAGCTTCAATCTT+TGG | + | chr4.1:26613049-26613068 | MS.gene006670:CDS | 35.0% | |
| TAAAAAAGATCGTCACAGCA+AGG | + | chr4.1:26612244-26612263 | MS.gene006670:CDS | 35.0% | |
| TTCAGAATACTCTCCAAATG+AGG | + | chr4.1:26612934-26612953 | MS.gene006670:CDS | 35.0% | |
| TTGAACATCGTAGAATTCGA+TGG | - | chr4.1:26612324-26612343 | None:intergenic | 35.0% | |
| TTTCGCATTCTGTTAGAACA+TGG | + | chr4.1:26612972-26612991 | MS.gene006670:CDS | 35.0% | |
| ! | GTAGTTGGAAAGAAAGGTAT+AGG | - | chr4.1:26612635-26612654 | None:intergenic | 35.0% |
| !! | AGGGTAGTTCTGAAAATTGA+TGG | - | chr4.1:26612675-26612694 | None:intergenic | 35.0% |
| !! | TTTGTTTCTGATGGATTAGC+AGG | + | chr4.1:26613079-26613098 | MS.gene006670:CDS | 35.0% |
| !!! | GTAAACTCACAGCCATTTTT+AGG | + | chr4.1:26612899-26612918 | MS.gene006670:CDS | 35.0% |
| AACTCAAGTGGAATGGTTGT+TGG | + | chr4.1:26612500-26612519 | MS.gene006670:CDS | 40.0% | |
| AGTATTCTGAACCTGAACCT+TGG | - | chr4.1:26612925-26612944 | None:intergenic | 40.0% | |
| AGTTGCAAACTCAAGTGGAA+TGG | + | chr4.1:26612493-26612512 | MS.gene006670:CDS | 40.0% | |
| ATTCCTGATACAGTTCAAGG+TGG | + | chr4.1:26613109-26613128 | MS.gene006670:CDS | 40.0% | |
| CATTCCTTCCAAGATCACAA+TGG | + | chr4.1:26612719-26612738 | MS.gene006670:CDS | 40.0% | |
| GAAACCATTGTGATCTTGGA+AGG | - | chr4.1:26612726-26612745 | None:intergenic | 40.0% | |
| GAAGAGGTAGTTGGAAAGAA+AGG | - | chr4.1:26612641-26612660 | None:intergenic | 40.0% | |
| GATGAAGTAGAAGAGGTAGT+TGG | - | chr4.1:26612650-26612669 | None:intergenic | 40.0% | |
| GATGGATGATGAAGTAGAAG+AGG | - | chr4.1:26612657-26612676 | None:intergenic | 40.0% | |
| TAGAAGGAGGACACATAGTT+CGG | + | chr4.1:26612213-26612232 | MS.gene006670:CDS | 40.0% | |
| TCCTATGGATTCTTCTTCAG+AGG | + | chr4.1:26613003-26613022 | MS.gene006670:CDS | 40.0% | |
| TGCATTCCTGATACAGTTCA+AGG | + | chr4.1:26613106-26613125 | MS.gene006670:CDS | 40.0% | |
| TTGTGGTTAGGAGAAGAAGA+AGG | - | chr4.1:26613166-26613185 | None:intergenic | 40.0% | |
| ! | AACTACCCTTCTGAAAACCT+TGG | + | chr4.1:26612686-26612705 | MS.gene006670:CDS | 40.0% |
| ! | AAGCTTCAATCTTTGGAAGC+AGG | + | chr4.1:26613056-26613075 | MS.gene006670:CDS | 40.0% |
| ! | ACCTCTGAAGAAGAATCCAT+AGG | - | chr4.1:26613007-26613026 | None:intergenic | 40.0% |
| ! | AGGAGAAGAAGAAGGTCTTT+TGG | - | chr4.1:26613158-26613177 | None:intergenic | 40.0% |
| !! | AGAGTTTGATTTTCGCCGAT+TGG | - | chr4.1:26612446-26612465 | None:intergenic | 40.0% |
| !! | CATACTTGTTGTGATTGCCA+TGG | - | chr4.1:26612752-26612771 | None:intergenic | 40.0% |
| !!! | GCTGTGACGATCTTTTTTAC+TGG | - | chr4.1:26612243-26612262 | None:intergenic | 40.0% |
| !!! | GTGACGATCTTTTTTACTGG+TGG | - | chr4.1:26612240-26612259 | None:intergenic | 40.0% |
| ACAGTTCAAGGTGGACAAGA+GGG | + | chr4.1:26613118-26613137 | MS.gene006670:CDS | 45.0% | |
| AGAAGGAGGACACATAGTTC+GGG | + | chr4.1:26612214-26612233 | MS.gene006670:CDS | 45.0% | |
| AGCCAATCCATTGCTTTGCT+TGG | - | chr4.1:26612368-26612387 | None:intergenic | 45.0% | |
| CCTGAACCTTGGCCTAAAAA+TGG | - | chr4.1:26612914-26612933 | None:intergenic | 45.0% | |
| CTTCAGAGGTTCATCATCAC+AGG | + | chr4.1:26613017-26613036 | MS.gene006670:CDS | 45.0% | |
| CTTGGAAGGAATGAAGAGAG+AGG | - | chr4.1:26612712-26612731 | None:intergenic | 45.0% | |
| GACCAAGCAAAGCAATGGAT+TGG | + | chr4.1:26612363-26612382 | MS.gene006670:CDS | 45.0% | |
| GAGATAGTTCAGGTAGAAGG+AGG | + | chr4.1:26612200-26612219 | MS.gene006670:CDS | 45.0% | |
| GGAGAGATAGTTCAGGTAGA+AGG | + | chr4.1:26612197-26612216 | MS.gene006670:CDS | 45.0% | |
| TACAGTTCAAGGTGGACAAG+AGG | + | chr4.1:26613117-26613136 | MS.gene006670:CDS | 45.0% | |
| TACGATGTTCAAGATCGCCT+CGG | + | chr4.1:26612332-26612351 | MS.gene006670:CDS | 45.0% | |
| TGACAGACCAAGCAAAGCAA+TGG | + | chr4.1:26612358-26612377 | MS.gene006670:CDS | 45.0% | |
| TGTCCACCTTGAACTGTATC+AGG | - | chr4.1:26613115-26613134 | None:intergenic | 45.0% | |
| ! | AGAGGCCAAGGTTTTCAGAA+GGG | - | chr4.1:26612694-26612713 | None:intergenic | 45.0% |
| !! | CCATTTTTAGGCCAAGGTTC+AGG | + | chr4.1:26612911-26612930 | MS.gene006670:CDS | 45.0% |
| !! | GGAAGCAGGTTTGTTTCTGA+TGG | + | chr4.1:26613070-26613089 | MS.gene006670:CDS | 45.0% |
| !!! | TCACAGCCATTTTTAGGCCA+AGG | + | chr4.1:26612905-26612924 | MS.gene006670:CDS | 45.0% |
| AAAAGGTCCTCGTGATCGCA+GGG | + | chr4.1:26612277-26612296 | MS.gene006670:CDS | 50.0% | |
| AGGAATGAAGAGAGAGGCCA+AGG | - | chr4.1:26612706-26612725 | None:intergenic | 50.0% | |
| CTTCCTCCATGGCATCCAAT+CGG | + | chr4.1:26612428-26612447 | MS.gene006670:CDS | 50.0% | |
| GTCTTCCATTGACAAGCTCG+CGG | + | chr4.1:26612403-26612422 | MS.gene006670:CDS | 50.0% | |
| TGGAGGAGGAGAGATAGTTC+AGG | + | chr4.1:26612190-26612209 | MS.gene006670:CDS | 50.0% | |
| TTCGACTGAAGGGCCTCATT+TGG | - | chr4.1:26612950-26612969 | None:intergenic | 50.0% | |
| ! | GAGAGGCCAAGGTTTTCAGA+AGG | - | chr4.1:26612695-26612714 | None:intergenic | 50.0% |
| !! | TTTTCGCCGATTGGATGCCA+TGG | - | chr4.1:26612437-26612456 | None:intergenic | 50.0% |
| AAGCTCCGCGAGCTTGTCAA+TGG | - | chr4.1:26612411-26612430 | None:intergenic | 55.0% | |
| CAAAAGGTCCTCGTGATCGC+AGG | + | chr4.1:26612276-26612295 | MS.gene006670:CDS | 55.0% | |
| TGCTTGGTCTGTCATAGCCG+AGG | - | chr4.1:26612352-26612371 | None:intergenic | 55.0% | |
| AGTCGAACCCTGCGATCACG+AGG | - | chr4.1:26612287-26612306 | None:intergenic | 60.0% | |
| ! | TCGCCGATTGGATGCCATGG+AGG | - | chr4.1:26612434-26612453 | None:intergenic | 60.0% |
| AGCTCGCGGAGCTTCCTCCA+TGG | + | chr4.1:26612417-26612436 | MS.gene006670:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 26612179 | 26613189 | 26612179 | ID=MS.gene006670 |
| chr4.1 | mRNA | 26612179 | 26613189 | 26612179 | ID=MS.gene006670.t1;Parent=MS.gene006670 |
| chr4.1 | exon | 26612179 | 26613189 | 26612179 | ID=MS.gene006670.t1.exon1;Parent=MS.gene006670.t1 |
| chr4.1 | CDS | 26612179 | 26613189 | 26612179 | ID=cds.MS.gene006670.t1;Parent=MS.gene006670.t1 |
| Gene Sequence |
| Protein sequence |