Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006677.t1 | XP_003607570.1 | 95 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 4.20E-132 | 480.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006677.t1 | Q9S7Y1 | 45.6 | 171 | 86 | 3 | 68 | 235 | 170 | 336 | 1.4e-30 | 134.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006677.t1 | G7JCJ8 | 95.0 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 3.1e-132 | 480.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene006677.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006677.t1 | MTR_4g079760 | 95.000 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 0.0 | 502 |
| MS.gene006677.t1 | MTR_2g091190 | 73.077 | 260 | 57 | 3 | 1 | 260 | 1 | 247 | 4.50e-114 | 328 |
| MS.gene006677.t1 | MTR_2g015890 | 48.837 | 215 | 105 | 3 | 25 | 238 | 19 | 229 | 6.11e-62 | 196 |
| MS.gene006677.t1 | MTR_2g015890 | 51.266 | 158 | 73 | 2 | 25 | 181 | 19 | 173 | 1.96e-46 | 154 |
| MS.gene006677.t1 | MTR_4g087920 | 40.964 | 249 | 138 | 6 | 6 | 248 | 10 | 255 | 1.16e-42 | 146 |
| MS.gene006677.t1 | MTR_2g015890 | 48.889 | 135 | 65 | 2 | 104 | 238 | 1 | 131 | 2.12e-35 | 124 |
| MS.gene006677.t1 | MTR_1g093750 | 41.667 | 192 | 101 | 2 | 68 | 255 | 154 | 338 | 3.08e-34 | 126 |
| MS.gene006677.t1 | MTR_3g070970 | 38.265 | 196 | 106 | 4 | 64 | 248 | 65 | 256 | 1.45e-33 | 122 |
| MS.gene006677.t1 | MTR_3g096568 | 71.053 | 76 | 22 | 0 | 140 | 215 | 236 | 311 | 3.44e-33 | 123 |
| MS.gene006677.t1 | MTR_5g066080 | 39.634 | 164 | 72 | 3 | 64 | 201 | 28 | 190 | 8.13e-21 | 89.0 |
| MS.gene006677.t1 | MTR_5g032375 | 34.356 | 163 | 90 | 3 | 60 | 209 | 33 | 191 | 2.43e-20 | 86.7 |
| MS.gene006677.t1 | MTR_2g015890 | 53.846 | 78 | 33 | 1 | 104 | 181 | 1 | 75 | 6.82e-20 | 82.8 |
| MS.gene006677.t1 | MTR_8g032210 | 80.357 | 56 | 9 | 2 | 42 | 97 | 41 | 94 | 6.49e-19 | 80.1 |
| MS.gene006677.t1 | MTR_1g018820 | 76.316 | 38 | 9 | 0 | 103 | 140 | 58 | 95 | 1.39e-12 | 62.8 |
| MS.gene006677.t1 | MTR_5g014520 | 27.568 | 185 | 93 | 6 | 47 | 201 | 133 | 306 | 1.17e-11 | 64.3 |
| MS.gene006677.t1 | MTR_8g064700 | 28.814 | 177 | 90 | 5 | 79 | 225 | 248 | 418 | 5.27e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006677.t1 | AT1G68810 | 37.891 | 256 | 134 | 9 | 4 | 249 | 111 | 351 | 4.87e-33 | 124 |
| MS.gene006677.t1 | AT3G56770 | 39.535 | 172 | 95 | 4 | 67 | 236 | 40 | 204 | 1.80e-28 | 108 |
| MS.gene006677.t1 | AT3G25710 | 41.830 | 153 | 88 | 1 | 68 | 220 | 128 | 279 | 7.05e-28 | 109 |
| MS.gene006677.t1 | AT2G40200 | 35.294 | 187 | 111 | 4 | 74 | 253 | 65 | 248 | 3.09e-26 | 103 |
| MS.gene006677.t1 | AT2G41130 | 36.199 | 221 | 126 | 5 | 25 | 236 | 13 | 227 | 3.78e-25 | 100 |
| MS.gene006677.t1 | AT4G38070 | 34.752 | 141 | 85 | 2 | 61 | 201 | 81 | 214 | 3.75e-17 | 79.0 |
| MS.gene006677.t1 | AT4G37850 | 24.865 | 185 | 106 | 5 | 74 | 233 | 151 | 327 | 1.40e-11 | 63.9 |
| MS.gene006677.t1 | AT4G37850 | 24.865 | 185 | 106 | 5 | 74 | 233 | 151 | 327 | 1.40e-11 | 63.9 |
Find 40 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACTTTCTCTTTGGTTT+TGG | 0.189232 | 4.1:+26483326 | MS.gene006677:CDS |
| GATTGGGGTTATGATATATT+TGG | 0.190751 | 4.1:+26483234 | MS.gene006677:CDS |
| GACATTTGAAAGAGCTAAAA+AGG | 0.203088 | 4.1:+26484834 | MS.gene006677:CDS |
| AAAGCAGATATTGCAACTTT+TGG | 0.234706 | 4.1:+26485043 | MS.gene006677:CDS |
| AGTGATGCTTTAATTGAAAA+AGG | 0.247436 | 4.1:-26484947 | None:intergenic |
| TTATGGTTCAACTTTCTCTT+TGG | 0.279286 | 4.1:+26483320 | MS.gene006677:CDS |
| GAAGTAAACAATGAGGTAAT+TGG | 0.285315 | 4.1:+26483291 | MS.gene006677:CDS |
| TGTAGAGGCACCTGTTAAAA+TGG | 0.303301 | 4.1:+26483368 | MS.gene006677:CDS |
| GAATACAGACAGTTTCTTGC+TGG | 0.381216 | 4.1:+26485127 | MS.gene006677:CDS |
| GAGGTAATTGGAAGTGGTTA+TGG | 0.384357 | 4.1:+26483303 | MS.gene006677:CDS |
| CTTATTTCATCATTGTCCTT+TGG | 0.388296 | 4.1:-26484890 | None:intergenic |
| TGTCATTCCAGGTGCTTTGA+AGG | 0.393290 | 4.1:+26483503 | MS.gene006677:CDS |
| GGAGATGCTACTGAGAGAAT+TGG | 0.414764 | 4.1:+26483255 | MS.gene006677:CDS |
| GGAAATGGAAGGTTATGATT+GGG | 0.418530 | 4.1:+26483218 | MS.gene006677:CDS |
| ACACTTCGTTGTGTCATTCC+AGG | 0.420229 | 4.1:+26483492 | MS.gene006677:CDS |
| TGGAAATGGAAGGTTATGAT+TGG | 0.437370 | 4.1:+26483217 | MS.gene006677:CDS |
| GAACAAGAGGGAGGTTGGAA+TGG | 0.468944 | 4.1:+26484920 | MS.gene006677:CDS |
| CAAGCTCTTAAGTCTGTACT+TGG | 0.491840 | 4.1:+26485160 | MS.gene006677:CDS |
| AACAATGAGGTAATTGGAAG+TGG | 0.504571 | 4.1:+26483297 | MS.gene006677:CDS |
| TTGAAGAACAAGAGGGAGGT+TGG | 0.512376 | 4.1:+26484915 | MS.gene006677:CDS |
| AATAAGCGTTGAAGAACAAG+AGG | 0.524950 | 4.1:+26484907 | MS.gene006677:CDS |
| CTTATATTAGACAATAAACC+TGG | 0.525756 | 4.1:-26484986 | None:intergenic |
| CCTGTTAAAATGGAAGGAAA+AGG | 0.530795 | 4.1:+26483378 | MS.gene006677:CDS |
| GAGGCACCTGTTAAAATGGA+AGG | 0.536082 | 4.1:+26483372 | MS.gene006677:CDS |
| CTATGTTGTGAATATCAACC+AGG | 0.546737 | 4.1:+26484968 | MS.gene006677:CDS |
| GAAATGGAAGGTTATGATTG+GGG | 0.551297 | 4.1:+26483219 | MS.gene006677:CDS |
| ATGGACAAAGCATCATTACT+TGG | 0.558251 | 4.1:+26484800 | MS.gene006677:CDS |
| CAGAGAGGAGGAGAAGAGCT+AGG | 0.569549 | 4.1:+26483451 | MS.gene006677:CDS |
| CAAAGCATCATTACTTGGTG+AGG | 0.575226 | 4.1:+26484805 | MS.gene006677:CDS |
| CAAGTACAGACTTAAGAGCT+TGG | 0.585666 | 4.1:-26485159 | None:intergenic |
| ATCATAGTGAGGCAGAGAGG+AGG | 0.598403 | 4.1:+26483439 | MS.gene006677:CDS |
| GAACTAACCTTCAAAGCACC+TGG | 0.603639 | 4.1:-26483510 | None:intergenic |
| GGAGAGAGGGGAGCTTGTAG+AGG | 0.606852 | 4.1:+26483353 | MS.gene006677:CDS |
| TACTTGGCTATGGAAATGGA+AGG | 0.619525 | 4.1:+26483207 | None:intergenic |
| TGAAGGTTTAATGATACCAA+AGG | 0.625000 | 4.1:+26484874 | MS.gene006677:CDS |
| AATGAAGCACAAGCATGTGA+AGG | 0.642340 | 4.1:+26484857 | MS.gene006677:CDS |
| AGAATCATAGTGAGGCAGAG+AGG | 0.654591 | 4.1:+26483436 | MS.gene006677:CDS |
| AGCTTTGAAGAATCATAGTG+AGG | 0.662555 | 4.1:+26483428 | MS.gene006677:CDS |
| AGCGTTGAAGAACAAGAGGG+AGG | 0.722418 | 4.1:+26484911 | MS.gene006677:CDS |
| ATAAGCGTTGAAGAACAAGA+GGG | 0.752312 | 4.1:+26484908 | MS.gene006677:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATTATAATTCCTTAAAAA+TGG | + | chr4.1:26484441-26484460 | MS.gene006677:intron | 15.0% |
| !! | TTCTTAATAACCAATTATAT+TGG | + | chr4.1:26483655-26483674 | MS.gene006677:intron | 15.0% |
| !!! | AGAGTATTTAATTGTTTTTA+TGG | + | chr4.1:26484403-26484422 | MS.gene006677:intron | 15.0% |
| !! | AGAAATATGTCTTCAAATTA+AGG | - | chr4.1:26484228-26484247 | None:intergenic | 20.0% |
| !! | ATCTTATAAGTGCTTAATTT+AGG | - | chr4.1:26483606-26483625 | None:intergenic | 20.0% |
| !! | CAATTAAATACTCTTCTAAA+TGG | - | chr4.1:26484397-26484416 | None:intergenic | 20.0% |
| !! | TAAATATTTGTGAAACTGTT+TGG | - | chr4.1:26483975-26483994 | None:intergenic | 20.0% |
| !!! | ATTTCTATGATCCATTTTTA+AGG | - | chr4.1:26484455-26484474 | None:intergenic | 20.0% |
| !!! | CTTATTTTCATAAGCATTTT+AGG | - | chr4.1:26483906-26483925 | None:intergenic | 20.0% |
| !!! | CTTCTAAATGGTTTTATTAA+TGG | - | chr4.1:26484385-26484404 | None:intergenic | 20.0% |
| !!! | TAACATGGTACTATTTTATT+GGG | + | chr4.1:26484121-26484140 | MS.gene006677:intron | 20.0% |
| !!! | TTTTCTCAATGATTAAAGAA+AGG | - | chr4.1:26483557-26483576 | None:intergenic | 20.0% |
| ! | AACTAGTTATTTGGTTGATT+AGG | + | chr4.1:26484056-26484075 | MS.gene006677:intron | 25.0% |
| ! | ACTAGTTATTTGGTTGATTA+GGG | + | chr4.1:26484057-26484076 | MS.gene006677:intron | 25.0% |
| ! | AGTGATGCTTTAATTGAAAA+AGG | - | chr4.1:26484950-26484969 | None:intergenic | 25.0% |
| ! | ATACTTCACACCAATATAAT+TGG | - | chr4.1:26483668-26483687 | None:intergenic | 25.0% |
| ! | ATCCAACATAGTTATGTATT+GGG | + | chr4.1:26484487-26484506 | MS.gene006677:intron | 25.0% |
| ! | CTTATATTAGACAATAAACC+TGG | - | chr4.1:26484989-26485008 | None:intergenic | 25.0% |
| ! | TAACTATCTCTCTAACAAAA+AGG | + | chr4.1:26483828-26483847 | MS.gene006677:intron | 25.0% |
| ! | TAGGTTGTCACAATTTATTT+AGG | - | chr4.1:26484036-26484055 | None:intergenic | 25.0% |
| ! | TATCCAACATAGTTATGTAT+TGG | + | chr4.1:26484486-26484505 | MS.gene006677:intron | 25.0% |
| ! | TGGTAAATGATCATATGTAA+GGG | + | chr4.1:26484356-26484375 | MS.gene006677:intron | 25.0% |
| ! | TGTTGAATTTAAGTGTTAAG+TGG | - | chr4.1:26484670-26484689 | None:intergenic | 25.0% |
| !! | ATCAACCAAATAACTAGTTT+AGG | - | chr4.1:26484055-26484074 | None:intergenic | 25.0% |
| !! | GTAACATGGTACTATTTTAT+TGG | + | chr4.1:26484120-26484139 | MS.gene006677:intron | 25.0% |
| AAACTTCAAATGGTGTAACA+TGG | + | chr4.1:26484106-26484125 | MS.gene006677:intron | 30.0% | |
| AAAGTCATTTACTCCATGTT+TGG | + | chr4.1:26483574-26483593 | MS.gene006677:intron | 30.0% | |
| AAGTCACAGTTTGATGTATT+TGG | + | chr4.1:26484169-26484188 | MS.gene006677:intron | 30.0% | |
| ACTGAGAGAATTGGTAAAAA+TGG | + | chr4.1:26483264-26483283 | MS.gene006677:CDS | 30.0% | |
| AGGTCAAATCAAACTTCAAA+TGG | + | chr4.1:26484096-26484115 | MS.gene006677:intron | 30.0% | |
| ATACAAGATGAGATGGATAA+TGG | - | chr4.1:26484278-26484297 | None:intergenic | 30.0% | |
| ATATTTGTGAAACTGTTTGG+TGG | - | chr4.1:26483972-26483991 | None:intergenic | 30.0% | |
| ATGTCTTCAAATTAAGGCTT+TGG | - | chr4.1:26484222-26484241 | None:intergenic | 30.0% | |
| CTCGTATATATCTTTCATTC+AGG | + | chr4.1:26484619-26484638 | MS.gene006677:intron | 30.0% | |
| CTGGTAAATGATCATATGTA+AGG | + | chr4.1:26484355-26484374 | MS.gene006677:intron | 30.0% | |
| CTTATTTCATCATTGTCCTT+TGG | - | chr4.1:26484893-26484912 | None:intergenic | 30.0% | |
| GAAGTAAACAATGAGGTAAT+TGG | + | chr4.1:26483291-26483310 | MS.gene006677:CDS | 30.0% | |
| GAATGAAAGATATATACGAG+AGG | - | chr4.1:26484619-26484638 | None:intergenic | 30.0% | |
| GACAACCTAAACTAGTTATT+TGG | + | chr4.1:26484047-26484066 | MS.gene006677:intron | 30.0% | |
| GACATTTGAAAGAGCTAAAA+AGG | + | chr4.1:26484834-26484853 | MS.gene006677:CDS | 30.0% | |
| GATTGGGGTTATGATATATT+TGG | + | chr4.1:26483234-26483253 | MS.gene006677:CDS | 30.0% | |
| GGTAAATGATCATATGTAAG+GGG | + | chr4.1:26484357-26484376 | MS.gene006677:intron | 30.0% | |
| TCCAACATAGTTATGTATTG+GGG | + | chr4.1:26484488-26484507 | MS.gene006677:intron | 30.0% | |
| TGAAGGTTTAATGATACCAA+AGG | + | chr4.1:26484874-26484893 | MS.gene006677:CDS | 30.0% | |
| TTAAGTTTAGCGTATAGATG+TGG | - | chr4.1:26484576-26484595 | None:intergenic | 30.0% | |
| TTATGGTTCAACTTTCTCTT+TGG | + | chr4.1:26483320-26483339 | MS.gene006677:CDS | 30.0% | |
| TTCTTCAATACAAGATGAGA+TGG | - | chr4.1:26484285-26484304 | None:intergenic | 30.0% | |
| ! | AAAGCAGATATTGCAACTTT+TGG | + | chr4.1:26485043-26485062 | MS.gene006677:CDS | 30.0% |
| ! | ATCTTGTATTGAAGAAGTGT+TGG | + | chr4.1:26484289-26484308 | MS.gene006677:intron | 30.0% |
| ! | ATTTAGGTTCTATCCAAACA+TGG | - | chr4.1:26483590-26483609 | None:intergenic | 30.0% |
| ! | TTTCCTTTTTATGACACAGA+TGG | + | chr4.1:26484781-26484800 | MS.gene006677:intron | 30.0% |
| !! | TCTTGTATTGAAGAAGTGTT+GGG | + | chr4.1:26484290-26484309 | MS.gene006677:intron | 30.0% |
| !! | TTCAACTTTCTCTTTGGTTT+TGG | + | chr4.1:26483326-26483345 | MS.gene006677:CDS | 30.0% |
| !!! | TGGTTTTGAAGTAAACAATG+AGG | + | chr4.1:26483284-26483303 | MS.gene006677:CDS | 30.0% |
| !!! | TTTCTCTTTGGTTTTGGATA+GGG | + | chr4.1:26483332-26483351 | MS.gene006677:CDS | 30.0% |
| AACAATGAGGTAATTGGAAG+TGG | + | chr4.1:26483297-26483316 | MS.gene006677:CDS | 35.0% | |
| ACTACAATAGACCGATGATT+AGG | + | chr4.1:26484531-26484550 | MS.gene006677:intron | 35.0% | |
| ATCCGAGTCTGATATCATAT+AGG | + | chr4.1:26483795-26483814 | MS.gene006677:intron | 35.0% | |
| ATCTAACTAGTCACCTTTAG+TGG | + | chr4.1:26483726-26483745 | MS.gene006677:intron | 35.0% | |
| CACCTATATGATATCAGACT+CGG | - | chr4.1:26483800-26483819 | None:intergenic | 35.0% | |
| CCTGTTAAAATGGAAGGAAA+AGG | + | chr4.1:26483378-26483397 | MS.gene006677:CDS | 35.0% | |
| CTATGTTGTGAATATCAACC+AGG | + | chr4.1:26484968-26484987 | MS.gene006677:CDS | 35.0% | |
| CTCTTAATGGTCCTAATCAT+CGG | - | chr4.1:26484545-26484564 | None:intergenic | 35.0% | |
| GAAATGGAAGGTTATGATTG+GGG | + | chr4.1:26483219-26483238 | MS.gene006677:CDS | 35.0% | |
| GATTAGGGTGATGAAAAGAA+GGG | + | chr4.1:26484072-26484091 | MS.gene006677:intron | 35.0% | |
| GGAAAAACTTTGATTAGGAG+GGG | - | chr4.1:26483757-26483776 | None:intergenic | 35.0% | |
| GGAAATGGAAGGTTATGATT+GGG | + | chr4.1:26483218-26483237 | MS.gene006677:CDS | 35.0% | |
| GGAGTATAAACCATACTAGT+TGG | + | chr4.1:26484326-26484345 | MS.gene006677:intron | 35.0% | |
| GGGAAAAACTTTGATTAGGA+GGG | - | chr4.1:26483758-26483777 | None:intergenic | 35.0% | |
| TAAGAGCAAGAAAAAGAAGG+AGG | + | chr4.1:26485209-26485228 | MS.gene006677:CDS | 35.0% | |
| TCAGAGTGGATATTAGTCAT+CGG | - | chr4.1:26483705-26483724 | None:intergenic | 35.0% | |
| TCCCCAATACATAACTATGT+TGG | - | chr4.1:26484492-26484511 | None:intergenic | 35.0% | |
| TCTAACTAGTCACCTTTAGT+GGG | + | chr4.1:26483727-26483746 | MS.gene006677:intron | 35.0% | |
| TCTCGGGAAAAACTTTGATT+AGG | - | chr4.1:26483762-26483781 | None:intergenic | 35.0% | |
| TGATTAGGGTGATGAAAAGA+AGG | + | chr4.1:26484071-26484090 | MS.gene006677:intron | 35.0% | |
| TGCTAAGAGCAAGAAAAAGA+AGG | + | chr4.1:26485206-26485225 | MS.gene006677:CDS | 35.0% | |
| TGGAAATGGAAGGTTATGAT+TGG | + | chr4.1:26483217-26483236 | MS.gene006677:CDS | 35.0% | |
| TGTCCATCTGTGTCATAAAA+AGG | - | chr4.1:26484787-26484806 | None:intergenic | 35.0% | |
| ! | AAACTGTTTGGTGGAACTTA+TGG | - | chr4.1:26483963-26483982 | None:intergenic | 35.0% |
| ! | ATGGACAAAGCATCATTACT+TGG | + | chr4.1:26484800-26484819 | MS.gene006677:CDS | 35.0% |
| ! | TGACTAGTTAGATTTCAGAG+TGG | - | chr4.1:26483719-26483738 | None:intergenic | 35.0% |
| ! | TGGTAGATTTTCTGTTTCAC+AGG | + | chr4.1:26485180-26485199 | MS.gene006677:CDS | 35.0% |
| !! | AATAAGCGTTGAAGAACAAG+AGG | + | chr4.1:26484907-26484926 | MS.gene006677:CDS | 35.0% |
| !! | AGCTTTGAAGAATCATAGTG+AGG | + | chr4.1:26483428-26483447 | MS.gene006677:CDS | 35.0% |
| !! | ATAAGCGTTGAAGAACAAGA+GGG | + | chr4.1:26484908-26484927 | MS.gene006677:CDS | 35.0% |
| !! | CCTTTTCCTTCCATTTTAAC+AGG | - | chr4.1:26483381-26483400 | None:intergenic | 35.0% |
| !!! | CTTTCTCTTTGGTTTTGGAT+AGG | + | chr4.1:26483331-26483350 | MS.gene006677:CDS | 35.0% |
| AATGAAGCACAAGCATGTGA+AGG | + | chr4.1:26484857-26484876 | MS.gene006677:CDS | 40.0% | |
| CAAGCTCTTAAGTCTGTACT+TGG | + | chr4.1:26485160-26485179 | MS.gene006677:CDS | 40.0% | |
| CAAGTACAGACTTAAGAGCT+TGG | - | chr4.1:26485162-26485181 | None:intergenic | 40.0% | |
| CCAGTTACTACCAACTAGTA+TGG | - | chr4.1:26484339-26484358 | None:intergenic | 40.0% | |
| CGGGAAAAACTTTGATTAGG+AGG | - | chr4.1:26483759-26483778 | None:intergenic | 40.0% | |
| CTTGTGAAGCTATGCTTACA+AGG | - | chr4.1:26484152-26484171 | None:intergenic | 40.0% | |
| GAATACAGACAGTTTCTTGC+TGG | + | chr4.1:26485127-26485146 | MS.gene006677:CDS | 40.0% | |
| GAGGTAATTGGAAGTGGTTA+TGG | + | chr4.1:26483303-26483322 | MS.gene006677:CDS | 40.0% | |
| GATCCTTTAAGCAAAGTCTC+GGG | - | chr4.1:26483778-26483797 | None:intergenic | 40.0% | |
| GGATCCTTTAAGCAAAGTCT+CGG | - | chr4.1:26483779-26483798 | None:intergenic | 40.0% | |
| GTGTTGGGAGCTTGAAAATT+TGG | + | chr4.1:26484305-26484324 | MS.gene006677:intron | 40.0% | |
| TAGTTATGTATTGGGGAGTC+CGG | + | chr4.1:26484495-26484514 | MS.gene006677:intron | 40.0% | |
| TTTCCCGAGACTTTGCTTAA+AGG | + | chr4.1:26483772-26483791 | MS.gene006677:intron | 40.0% | |
| ! | CAAAGCATCATTACTTGGTG+AGG | + | chr4.1:26484805-26484824 | MS.gene006677:CDS | 40.0% |
| ! | GCAGATATTGCAACTTTTGG+AGG | + | chr4.1:26485046-26485065 | MS.gene006677:CDS | 40.0% |
| !! | CCATACTAGTTGGTAGTAAC+TGG | + | chr4.1:26484336-26484355 | MS.gene006677:intron | 40.0% |
| !! | TGTAGAGGCACCTGTTAAAA+TGG | + | chr4.1:26483368-26483387 | MS.gene006677:CDS | 40.0% |
| !! | TGTGGTGTTGTGTCTCTTAA+TGG | - | chr4.1:26484558-26484577 | None:intergenic | 40.0% |
| AGAATCATAGTGAGGCAGAG+AGG | + | chr4.1:26483436-26483455 | MS.gene006677:CDS | 45.0% | |
| AGGGTGATGAAAAGAAGGGT+AGG | + | chr4.1:26484076-26484095 | MS.gene006677:intron | 45.0% | |
| AGTTATGTATTGGGGAGTCC+GGG | + | chr4.1:26484496-26484515 | MS.gene006677:intron | 45.0% | |
| ATTAGTCATCGGCAACAACG+CGG | - | chr4.1:26483694-26483713 | None:intergenic | 45.0% | |
| GGAGATGCTACTGAGAGAAT+TGG | + | chr4.1:26483255-26483274 | MS.gene006677:CDS | 45.0% | |
| TGTAGTTTCTGACACTCTCC+CGG | - | chr4.1:26484517-26484536 | None:intergenic | 45.0% | |
| TGTCATTCCAGGTGCTTTGA+AGG | + | chr4.1:26483503-26483522 | MS.gene006677:CDS | 45.0% | |
| TTGAAGAACAAGAGGGAGGT+TGG | + | chr4.1:26484915-26484934 | MS.gene006677:CDS | 45.0% | |
| ! | ACACTTCGTTGTGTCATTCC+AGG | + | chr4.1:26483492-26483511 | MS.gene006677:CDS | 45.0% |
| ! | GAACTAACCTTCAAAGCACC+TGG | - | chr4.1:26483513-26483532 | None:intergenic | 45.0% |
| ! | GAGGCACCTGTTAAAATGGA+AGG | + | chr4.1:26483372-26483391 | MS.gene006677:CDS | 45.0% |
| !! | TAAGGCTTTGGAGAAGATGC+AGG | - | chr4.1:26484210-26484229 | None:intergenic | 45.0% |
| !!! | TGGTTTTGGATAGGGAGAGA+GGG | + | chr4.1:26483340-26483359 | MS.gene006677:CDS | 45.0% |
| !!! | TTGGTTTTGGATAGGGAGAG+AGG | + | chr4.1:26483339-26483358 | MS.gene006677:CDS | 45.0% |
| ATCATAGTGAGGCAGAGAGG+AGG | + | chr4.1:26483439-26483458 | MS.gene006677:CDS | 50.0% | |
| GAACAAGAGGGAGGTTGGAA+TGG | + | chr4.1:26484920-26484939 | MS.gene006677:CDS | 50.0% | |
| GGAGAAGATGCAGGCATACA+TGG | - | chr4.1:26484201-26484220 | None:intergenic | 50.0% | |
| ! | AGCGTTGAAGAACAAGAGGG+AGG | + | chr4.1:26484911-26484930 | MS.gene006677:CDS | 50.0% |
| !!! | GGTTTTGGATAGGGAGAGAG+GGG | + | chr4.1:26483341-26483360 | MS.gene006677:CDS | 50.0% |
| CAGAGAGGAGGAGAAGAGCT+AGG | + | chr4.1:26483451-26483470 | MS.gene006677:CDS | 55.0% | |
| AGGAGGGGTGAGCCCACTAA+AGG | - | chr4.1:26483742-26483761 | None:intergenic | 60.0% | |
| AGTCATCGGCAACAACGCGG+TGG | - | chr4.1:26483691-26483710 | None:intergenic | 60.0% | |
| GGAGAGAGGGGAGCTTGTAG+AGG | + | chr4.1:26483353-26483372 | MS.gene006677:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 26483216 | 26485273 | 26483216 | ID=MS.gene006677 |
| chr4.1 | mRNA | 26483216 | 26485273 | 26483216 | ID=MS.gene006677.t1;Parent=MS.gene006677 |
| chr4.1 | exon | 26483216 | 26483524 | 26483216 | ID=MS.gene006677.t1.exon1;Parent=MS.gene006677.t1 |
| chr4.1 | CDS | 26483216 | 26483524 | 26483216 | ID=cds.MS.gene006677.t1;Parent=MS.gene006677.t1 |
| chr4.1 | exon | 26484800 | 26485273 | 26484800 | ID=MS.gene006677.t1.exon2;Parent=MS.gene006677.t1 |
| chr4.1 | CDS | 26484800 | 26485273 | 26484800 | ID=cds.MS.gene006677.t1;Parent=MS.gene006677.t1 |
| Gene Sequence |
| Protein sequence |
