AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006689

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006689.t1 MTR_4g079960 93.671 316 14 2 1 313 1 313 0.0 540
MS.gene006689.t1 MTR_4g079960 93.443 305 14 2 1 302 1 302 0.0 510
MS.gene006689.t1 MTR_4g079960 92.508 307 17 2 1 304 1 304 0.0 510
MS.gene006689.t1 MTR_2g016140 49.068 322 110 5 19 303 11 315 1.89e-88 268
MS.gene006689.t1 MTR_2g016140 49.379 322 108 6 19 303 11 314 1.67e-87 265
MS.gene006689.t1 MTR_8g022290 38.966 290 144 7 27 297 64 339 1.82e-45 158
MS.gene006689.t1 MTR_2g092960 33.924 395 156 11 8 305 23 409 3.37e-39 147
MS.gene006689.t1 MTR_2g102227 31.250 288 141 7 14 293 255 493 4.81e-27 110
MS.gene006689.t1 MTR_1g061600 37.255 102 57 3 31 131 133 228 2.44e-16 79.7
MS.gene006689.t1 MTR_6g486270 38.947 95 52 2 31 124 130 219 2.99e-16 79.0
MS.gene006689.t1 MTR_3g014280 25.773 291 167 9 26 291 33 299 1.54e-14 73.6
MS.gene006689.t1 MTR_4g117990 35.922 103 63 2 30 131 43 143 4.65e-14 72.0
MS.gene006689.t1 MTR_1g037650 33.333 102 60 2 26 127 33 126 5.10e-12 64.3
MS.gene006689.t1 MTR_7g081190 41.429 70 40 1 30 99 45 113 4.69e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006689.t1 AT3G58630 47.678 323 123 9 1 299 1 301 3.55e-74 231
MS.gene006689.t1 AT3G58630 47.678 323 123 9 1 299 1 301 5.83e-74 230
MS.gene006689.t1 AT5G05550 39.928 278 116 5 27 304 20 246 3.23e-50 167
MS.gene006689.t1 AT3G11100 42.361 288 111 9 17 302 13 247 3.99e-50 167
MS.gene006689.t1 AT5G05550 39.855 276 115 5 27 302 20 244 1.63e-49 165
MS.gene006689.t1 AT5G05550 39.781 274 114 5 27 300 20 242 1.55e-48 163
MS.gene006689.t1 AT3G14180 33.929 336 147 7 27 293 80 409 9.43e-42 150
MS.gene006689.t1 AT1G54060 51.485 101 44 2 27 127 90 185 7.72e-22 95.1
MS.gene006689.t1 AT3G10030 39.669 121 66 3 16 134 144 259 1.67e-20 92.0
MS.gene006689.t1 AT3G10030 39.669 121 66 3 16 134 144 259 1.79e-20 92.0
MS.gene006689.t1 AT3G54390 27.645 293 167 9 19 299 23 282 2.77e-16 78.2
MS.gene006689.t1 AT3G54390 27.645 293 167 9 19 299 39 298 3.04e-16 78.2
MS.gene006689.t1 AT3G24490 38.298 94 52 2 31 124 90 177 3.57e-15 75.5
MS.gene006689.t1 AT2G44730 34.737 95 59 2 30 123 63 155 7.99e-12 65.9

Find 102 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGAAACCAAACTCCTTA+TGG 0.211114 4.1:-26380435 None:intergenic
GGCTGCTGCGGCGGCGGCTG+AGG 0.328447 4.1:+26380354 MS.gene006689:CDS
ACAGAGACAAATGGTGGAAT+TGG 0.329589 4.1:+26380516 MS.gene006689:CDS
GATGCAGTTTGTGAAGGATT+TGG 0.330097 4.1:+26380549 MS.gene006689:CDS
CTTCCACCCTCATCGACGCC+TGG 0.342555 4.1:+26379858 MS.gene006689:CDS
ACGTCGCGCTTTCTTGTTAC+CGG 0.348904 4.1:-26379969 None:intergenic
GACGAAGGTTACCGCGGTTA+AGG 0.349488 4.1:-26379898 None:intergenic
TCCCCGTCCGCGAAGACTGC+TGG 0.376207 4.1:+26379822 MS.gene006689:CDS
CGCGGCGGCTGCTGCGGCGG+CGG 0.380481 4.1:+26380348 MS.gene006689:CDS
GATGGGACCCATAAGGAGTT+TGG 0.382677 4.1:+26380427 MS.gene006689:CDS
TCTGAAACCAAACTCCTTAT+GGG 0.394233 4.1:-26380434 None:intergenic
GTAACCTTCGTCAGAAAACT+TGG 0.396096 4.1:+26379909 MS.gene006689:CDS
AATGATCATAAATTTGAAAC+AGG 0.398889 4.1:-26380663 None:intergenic
CTGGTAACCGCCGTCGGATT+CGG 0.403172 4.1:-26380062 None:intergenic
ATCGTTCCGGCGGAATTTCT+CGG 0.404517 4.1:+26380321 MS.gene006689:CDS
GGTGGAGAGGGTGGAGATGG+TGG 0.405198 4.1:-26380202 None:intergenic
GAGGGTGGAAGTTGCGTCTT+CGG 0.412190 4.1:-26379846 None:intergenic
TCTTCTTTAACGTGTCGATT+CGG 0.420026 4.1:-26380012 None:intergenic
AGTACAAGATCGAGAAAGCT+AGG 0.431421 4.1:+26380035 MS.gene006689:CDS
TTCCACCCTCATCGACGCCT+GGG 0.432995 4.1:+26379859 MS.gene006689:CDS
AAACGCACTAAACGTGCTTC+TGG 0.443118 4.1:+26380625 MS.gene006689:CDS
GTGTGGAGTCAGAGGAATGG+AGG 0.449241 4.1:+26380383 MS.gene006689:CDS
GTCCAGCAGTCTTCGCGGAC+GGG 0.450561 4.1:-26379824 None:intergenic
ACTAAACGTGCTTCTGGTTC+CGG 0.451057 4.1:+26380631 MS.gene006689:CDS
GGCGGCGTGGACGTCGTTGA+CGG 0.453788 4.1:-26379948 None:intergenic
CATCCGGTCGGTCCCCGATC+CGG 0.459199 4.1:+26380259 MS.gene006689:CDS
AAAGAGACGAAGCATCGTTC+CGG 0.461522 4.1:+26380308 MS.gene006689:CDS
TGTGGAGTCAGAGGAATGGA+GGG 0.481728 4.1:+26380384 MS.gene006689:CDS
GACGGTGGAGAGGGTGGAGA+TGG 0.482196 4.1:-26380205 None:intergenic
GTTCGCGGCGGCTGCTGCGG+CGG 0.489343 4.1:+26380345 MS.gene006689:CDS
GGCGTTCGCGGCGGCTGCTG+CGG 0.494203 4.1:+26380342 MS.gene006689:CDS
ACCGTCTCCACCGTCGCCTC+CGG 0.494561 4.1:+26380222 MS.gene006689:CDS
TCCAGCAGTCTTCGCGGACG+GGG 0.495685 4.1:-26379823 None:intergenic
TGGAGTCAGAGGAATGGAGG+GGG 0.503575 4.1:+26380386 MS.gene006689:CDS
ACTCGTCTTGACGTTCTCAT+CGG 0.505614 4.1:+26380103 MS.gene006689:CDS
CAGTCTTCGCGGACGGGGAA+CGG 0.508470 4.1:-26379818 None:intergenic
GCGGAATTTCTCGGCGTTCG+CGG 0.513561 4.1:+26380330 MS.gene006689:CDS
GTTGATAGGTGACGGAGCTC+CGG 0.518538 4.1:-26379765 None:intergenic
CGCGGCGGAACGGAGTTGAT+AGG 0.521754 4.1:-26379779 None:intergenic
GGAGAGGGTGGAGATGGTGG+AGG 0.523602 4.1:-26380199 None:intergenic
GGTTGACGTTTGACGACGGT+TGG 0.525221 4.1:-26380178 None:intergenic
TCTCCCCGCCGGTGAATGTA+CGG 0.525928 4.1:+26380149 MS.gene006689:CDS
AGAAAACGATGGGACCCATA+AGG 0.527107 4.1:+26380420 MS.gene006689:CDS
GGTGGAGACGGTGGAGAGGG+TGG 0.527863 4.1:-26380211 None:intergenic
GGTCCAGCAGTCTTCGCGGA+CGG 0.531762 4.1:-26379825 None:intergenic
GCCGGAGGCGACGGTGGAGA+CGG 0.537471 4.1:-26380223 None:intergenic
GGAGTAGACCGTACATTCAC+CGG 0.542070 4.1:-26380157 None:intergenic
TCAGAGAATGCAGTTATACA+TGG 0.544592 4.1:+26380576 MS.gene006689:CDS
GGCAGAAAGTGTGGAGTCAG+AGG 0.545717 4.1:+26380375 MS.gene006689:CDS
GTTCCGGATCGGGGACCGAC+CGG 0.547076 4.1:-26380262 None:intergenic
ATTATCCACGCCGGAGGCGA+CGG 0.547703 4.1:-26380232 None:intergenic
CGACGGTGGAGACGGTGGAG+AGG 0.548909 4.1:-26380215 None:intergenic
GTGGACGTCGTTGACGGCGT+CGG 0.549602 4.1:-26379942 None:intergenic
TTGAAACAGGTTAAGCTCAC+CGG 0.549616 4.1:-26380650 None:intergenic
GCAGAGGATGCAGTTTGTGA+AGG 0.549708 4.1:+26380543 MS.gene006689:CDS
GGCGATGACGACGGAAGACG+CGG 0.549924 4.1:-26379797 None:intergenic
CTTCGGTCCAGCAGTCTTCG+CGG 0.552125 4.1:-26379829 None:intergenic
GTCGAGGTAGCGTTCACCCC+AGG 0.553968 4.1:-26379876 None:intergenic
ACGGCGGTTACCAGAGTCCC+TGG 0.554940 4.1:+26380071 MS.gene006689:CDS
TGGTTTCAGAGAGCTCGCTC+AGG 0.555951 4.1:+26380447 MS.gene006689:CDS
AAAGTGTGGAGTCAGAGGAA+TGG 0.557513 4.1:+26380380 MS.gene006689:CDS
AGCTTCAAAACAGAGACAAA+TGG 0.558007 4.1:+26380507 MS.gene006689:CDS
CGACGGAAGACGCGGCGGAA+CGG 0.559377 4.1:-26379789 None:intergenic
GTCAACGACGTCCACGCCGC+CGG 0.559754 4.1:+26379950 MS.gene006689:CDS
GACGGTGGAGACGGTGGAGA+GGG 0.563006 4.1:-26380214 None:intergenic
GGCGTGGATAATCTCTCATC+CGG 0.563671 4.1:+26380243 MS.gene006689:CDS
TTCACCCCAGGCGTCGATGA+GGG 0.566151 4.1:-26379864 None:intergenic
GGTTACCGCGGTTAAGGTCG+AGG 0.573221 4.1:-26379892 None:intergenic
ACCCCAGGCGTCGATGAGGG+TGG 0.576167 4.1:-26379861 None:intergenic
CTCCACCGTCGCCTCCGGCG+TGG 0.577896 4.1:+26380227 MS.gene006689:CDS
GTACAAGATCGAGAAAGCTA+GGG 0.590074 4.1:+26380036 MS.gene006689:CDS
ACGGGGAACGGCGATGACGA+CGG 0.590204 4.1:-26379806 None:intergenic
GAGACGAAGCATCGTTCCGG+CGG 0.597085 4.1:+26380311 MS.gene006689:CDS
TGGATAATCTCTCATCCGGT+CGG 0.599124 4.1:+26380247 MS.gene006689:CDS
ATCCACGCCGGAGGCGACGG+TGG 0.604964 4.1:-26380229 None:intergenic
AGAAAGGAAGAGAAAACGAT+GGG 0.606592 4.1:+26380410 MS.gene006689:CDS
CTTTCTTGTTACCGGCGGCG+TGG 0.607096 4.1:-26379961 None:intergenic
TCGTCAGAAAACTTGGCAAG+AGG 0.608905 4.1:+26379916 MS.gene006689:CDS
GTGGAGTCAGAGGAATGGAG+GGG 0.611126 4.1:+26380385 MS.gene006689:CDS
TAGACCGTACATTCACCGGC+GGG 0.615042 4.1:-26380153 None:intergenic
GTTCACCCCAGGCGTCGATG+AGG 0.617071 4.1:-26379865 None:intergenic
GGAGGCGACGGTGGAGACGG+TGG 0.619172 4.1:-26380220 None:intergenic
TGGTGGAATTGGAGAAGCAG+AGG 0.620275 4.1:+26380527 MS.gene006689:CDS
GGCGGCTGAGGCAGAAAGTG+TGG 0.620535 4.1:+26380366 MS.gene006689:CDS
TCCACCCTCATCGACGCCTG+GGG 0.621538 4.1:+26379860 MS.gene006689:CDS
GGAACGGAGTTGATAGGTGA+CGG 0.622230 4.1:-26379773 None:intergenic
GGGACTCTGGTAACCGCCGT+CGG 0.624801 4.1:-26380068 None:intergenic
GAATTTCTCGGCGTTCGCGG+CGG 0.637732 4.1:+26380333 MS.gene006689:CDS
AAGAAAGGAAGAGAAAACGA+TGG 0.648071 4.1:+26380409 MS.gene006689:CDS
CGAACGCCGAGAAATTCCGC+CGG 0.653177 4.1:-26380327 None:intergenic
GCAGTTATACATGGAAACGC+AGG 0.653381 4.1:+26380585 MS.gene006689:CDS
TGAGAGATTATCCACGCCGG+AGG 0.660526 4.1:-26380238 None:intergenic
TTCAAAACAGAGACAAATGG+TGG 0.662111 4.1:+26380510 MS.gene006689:CDS
GCTAGGGTTTCCGAATCCGA+CGG 0.665069 4.1:+26380052 MS.gene006689:CDS
TCGCGCTTTCTTGTTACCGG+CGG 0.665856 4.1:-26379966 None:intergenic
AGGGTTTCCGAATCCGACGG+CGG 0.672515 4.1:+26380055 MS.gene006689:CDS
GATGACGACGGAAGACGCGG+CGG 0.700874 4.1:-26379794 None:intergenic
AGACCGTACATTCACCGGCG+GGG 0.706976 4.1:-26380152 None:intergenic
CGCTACCTCGACCTTAACCG+CGG 0.709531 4.1:+26379887 MS.gene006689:CDS
GTAGACCGTACATTCACCGG+CGG 0.721299 4.1:-26380154 None:intergenic
TGGAGGTTGACGTTTGACGA+CGG 0.728369 4.1:-26380182 None:intergenic
GGATGAGAGATTATCCACGC+CGG 0.738065 4.1:-26380241 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGATCATAAATTTGAAAC+AGG - chr4.1:26380666-26380685 None:intergenic 20.0%
AAGAAAGGAAGAGAAAACGA+TGG + chr4.1:26380409-26380428 MS.gene006689:CDS 35.0%
AGAAAGGAAGAGAAAACGAT+GGG + chr4.1:26380410-26380429 MS.gene006689:CDS 35.0%
AGCTTCAAAACAGAGACAAA+TGG + chr4.1:26380507-26380526 MS.gene006689:CDS 35.0%
TCAGAGAATGCAGTTATACA+TGG + chr4.1:26380576-26380595 MS.gene006689:CDS 35.0%
TTCAAAACAGAGACAAATGG+TGG + chr4.1:26380510-26380529 MS.gene006689:CDS 35.0%
! TCTGAAACCAAACTCCTTAT+GGG - chr4.1:26380437-26380456 None:intergenic 35.0%
!! TCTTCTTTAACGTGTCGATT+CGG - chr4.1:26380015-26380034 None:intergenic 35.0%
ACGTCAAGACGAGTGAAAAA+CGG - chr4.1:26380097-26380116 None:intergenic 40.0%
AGTACAAGATCGAGAAAGCT+AGG + chr4.1:26380035-26380054 MS.gene006689:CDS 40.0%
GATGCAGTTTGTGAAGGATT+TGG + chr4.1:26380549-26380568 MS.gene006689:CDS 40.0%
GTAACCTTCGTCAGAAAACT+TGG + chr4.1:26379909-26379928 MS.gene006689:CDS 40.0%
GTACAAGATCGAGAAAGCTA+GGG + chr4.1:26380036-26380055 MS.gene006689:CDS 40.0%
TTGAAACAGGTTAAGCTCAC+CGG - chr4.1:26380653-26380672 None:intergenic 40.0%
! ACAGAGACAAATGGTGGAAT+TGG + chr4.1:26380516-26380535 MS.gene006689:CDS 40.0%
!! CTCTGAAACCAAACTCCTTA+TGG - chr4.1:26380438-26380457 None:intergenic 40.0%
AAACGCACTAAACGTGCTTC+TGG + chr4.1:26380625-26380644 MS.gene006689:CDS 45.0%
AAAGTGTGGAGTCAGAGGAA+TGG + chr4.1:26380380-26380399 MS.gene006689:CDS 45.0%
AACACAAAAACGTCCGGCAA+TGG + chr4.1:26380282-26380301 MS.gene006689:CDS 45.0%
ACTCGTCTTGACGTTCTCAT+CGG + chr4.1:26380103-26380122 MS.gene006689:CDS 45.0%
AGAAAACGATGGGACCCATA+AGG + chr4.1:26380420-26380439 MS.gene006689:CDS 45.0%
ATCCGGAACACAAAAACGTC+CGG + chr4.1:26380276-26380295 MS.gene006689:CDS 45.0%
GCAGTTATACATGGAAACGC+AGG + chr4.1:26380585-26380604 MS.gene006689:CDS 45.0%
TCGTCAGAAAACTTGGCAAG+AGG + chr4.1:26379916-26379935 MS.gene006689:CDS 45.0%
TGGATAATCTCTCATCCGGT+CGG + chr4.1:26380247-26380266 MS.gene006689:CDS 45.0%
! ACGTTTTTGTGTTCCGGATC+GGG - chr4.1:26380275-26380294 None:intergenic 45.0%
! CTTGCCAAGTTTTCTGACGA+AGG - chr4.1:26379916-26379935 None:intergenic 45.0%
! GACGTTTTTGTGTTCCGGAT+CGG - chr4.1:26380276-26380295 None:intergenic 45.0%
! TCGGTTTTTGCACTGAACGT+CGG - chr4.1:26379996-26380015 None:intergenic 45.0%
! TCTCATCGGCGATACTTTTC+CGG + chr4.1:26380117-26380136 MS.gene006689:CDS 45.0%
! TTTTCTGACGAAGGTTACCG+CGG - chr4.1:26379907-26379926 None:intergenic 45.0%
!! AAAGAGACGAAGCATCGTTC+CGG + chr4.1:26380308-26380327 MS.gene006689:CDS 45.0%
!! ACTAAACGTGCTTCTGGTTC+CGG + chr4.1:26380631-26380650 MS.gene006689:CDS 45.0%
AAGACGAGTGAAAAACGGCC+AGG - chr4.1:26380092-26380111 None:intergenic 50.0%
ACGTCGCGCTTTCTTGTTAC+CGG - chr4.1:26379972-26379991 None:intergenic 50.0%
AGACGAGTGAAAAACGGCCA+GGG - chr4.1:26380091-26380110 None:intergenic 50.0%
ATCGTTCCGGCGGAATTTCT+CGG + chr4.1:26380321-26380340 MS.gene006689:CDS 50.0%
GATGGGACCCATAAGGAGTT+TGG + chr4.1:26380427-26380446 MS.gene006689:CDS 50.0%
GCAGAGGATGCAGTTTGTGA+AGG + chr4.1:26380543-26380562 MS.gene006689:CDS 50.0%
GGAGTAGACCGTACATTCAC+CGG - chr4.1:26380160-26380179 None:intergenic 50.0%
GGATGAGAGATTATCCACGC+CGG - chr4.1:26380244-26380263 None:intergenic 50.0%
GGCGTGGATAATCTCTCATC+CGG + chr4.1:26380243-26380262 MS.gene006689:CDS 50.0%
TGGAGGTTGACGTTTGACGA+CGG - chr4.1:26380185-26380204 None:intergenic 50.0%
TGGTGGAATTGGAGAAGCAG+AGG + chr4.1:26380527-26380546 MS.gene006689:CDS 50.0%
TGTGGAGTCAGAGGAATGGA+GGG + chr4.1:26380384-26380403 MS.gene006689:CDS 50.0%
! CGTTTTTGTGTTCCGGATCG+GGG - chr4.1:26380274-26380293 None:intergenic 50.0%
! TCGTCTCTTTTCGCCATTGC+CGG - chr4.1:26380298-26380317 None:intergenic 50.0%
! TGCCGGACGTTTTTGTGTTC+CGG - chr4.1:26380281-26380300 None:intergenic 50.0%
!! GGAACGGAGTTGATAGGTGA+CGG - chr4.1:26379776-26379795 None:intergenic 50.0%
GACGAAGGTTACCGCGGTTA+AGG - chr4.1:26379901-26379920 None:intergenic 55.0%
GAGGAATGGAGGGGGAAGAA+AGG + chr4.1:26380394-26380413 MS.gene006689:CDS 55.0%
GAGGGTGGAAGTTGCGTCTT+CGG - chr4.1:26379849-26379868 None:intergenic 55.0%
GCTAGGGTTTCCGAATCCGA+CGG + chr4.1:26380052-26380071 MS.gene006689:CDS 55.0%
GGTCAAAAAACTCTCCCCGC+CGG + chr4.1:26380138-26380157 MS.gene006689:CDS 55.0%
GGTTGACGTTTGACGACGGT+TGG - chr4.1:26380181-26380200 None:intergenic 55.0%
GTAGACCGTACATTCACCGG+CGG - chr4.1:26380157-26380176 None:intergenic 55.0%
GTGGAGTCAGAGGAATGGAG+GGG + chr4.1:26380385-26380404 MS.gene006689:CDS 55.0%
GTGTGGAGTCAGAGGAATGG+AGG + chr4.1:26380383-26380402 MS.gene006689:CDS 55.0%
TAGACCGTACATTCACCGGC+GGG - chr4.1:26380156-26380175 None:intergenic 55.0%
TCGCGCTTTCTTGTTACCGG+CGG - chr4.1:26379969-26379988 None:intergenic 55.0%
TGAAAAACGGCCAGGGACTC+TGG - chr4.1:26380084-26380103 None:intergenic 55.0%
TGAGAGATTATCCACGCCGG+AGG - chr4.1:26380241-26380260 None:intergenic 55.0%
TGGAGTCAGAGGAATGGAGG+GGG + chr4.1:26380386-26380405 MS.gene006689:CDS 55.0%
TGGTTTCAGAGAGCTCGCTC+AGG + chr4.1:26380447-26380466 MS.gene006689:CDS 55.0%
! GGCAGAAAGTGTGGAGTCAG+AGG + chr4.1:26380375-26380394 MS.gene006689:CDS 55.0%
!! GTTGATAGGTGACGGAGCTC+CGG - chr4.1:26379768-26379787 None:intergenic 55.0%
!!! GGCGGGGAGAGTTTTTTGAC+CGG - chr4.1:26380139-26380158 None:intergenic 55.0%
AGACCGTACATTCACCGGCG+GGG - chr4.1:26380155-26380174 None:intergenic 60.0%
AGGGTTTCCGAATCCGACGG+CGG + chr4.1:26380055-26380074 MS.gene006689:CDS 60.0%
ATTATCCACGCCGGAGGCGA+CGG - chr4.1:26380235-26380254 None:intergenic 60.0%
CGAACGCCGAGAAATTCCGC+CGG - chr4.1:26380330-26380349 None:intergenic 60.0%
CGCTACCTCGACCTTAACCG+CGG + chr4.1:26379887-26379906 MS.gene006689:CDS 60.0%
CTGGTAACCGCCGTCGGATT+CGG - chr4.1:26380065-26380084 None:intergenic 60.0%
CTTCGGTCCAGCAGTCTTCG+CGG - chr4.1:26379832-26379851 None:intergenic 60.0%
CTTTCTTGTTACCGGCGGCG+TGG - chr4.1:26379964-26379983 None:intergenic 60.0%
GAATTTCTCGGCGTTCGCGG+CGG + chr4.1:26380333-26380352 MS.gene006689:CDS 60.0%
GCGGAATTTCTCGGCGTTCG+CGG + chr4.1:26380330-26380349 MS.gene006689:CDS 60.0%
GGTTACCGCGGTTAAGGTCG+AGG - chr4.1:26379895-26379914 None:intergenic 60.0%
TCTCCCCGCCGGTGAATGTA+CGG + chr4.1:26380149-26380168 MS.gene006689:CDS 60.0%
TTCCACCCTCATCGACGCCT+GGG + chr4.1:26379859-26379878 MS.gene006689:CDS 60.0%
!! GAGACGAAGCATCGTTCCGG+CGG + chr4.1:26380311-26380330 MS.gene006689:CDS 60.0%
!! TTCACCCCAGGCGTCGATGA+GGG - chr4.1:26379867-26379886 None:intergenic 60.0%
ACGGCGGTTACCAGAGTCCC+TGG + chr4.1:26380071-26380090 MS.gene006689:CDS 65.0%
ACGGGGAACGGCGATGACGA+CGG - chr4.1:26379809-26379828 None:intergenic 65.0%
CAGTCTTCGCGGACGGGGAA+CGG - chr4.1:26379821-26379840 None:intergenic 65.0%
CTTCCACCCTCATCGACGCC+TGG + chr4.1:26379858-26379877 MS.gene006689:CDS 65.0%
GACGGTGGAGACGGTGGAGA+GGG - chr4.1:26380217-26380236 None:intergenic 65.0%
GACGGTGGAGAGGGTGGAGA+TGG - chr4.1:26380208-26380227 None:intergenic 65.0%
GATGACGACGGAAGACGCGG+CGG - chr4.1:26379797-26379816 None:intergenic 65.0%
GGCGATGACGACGGAAGACG+CGG - chr4.1:26379800-26379819 None:intergenic 65.0%
GGCGGCTGAGGCAGAAAGTG+TGG + chr4.1:26380366-26380385 MS.gene006689:CDS 65.0%
GGGACTCTGGTAACCGCCGT+CGG - chr4.1:26380071-26380090 None:intergenic 65.0%
GGTCCAGCAGTCTTCGCGGA+CGG - chr4.1:26379828-26379847 None:intergenic 65.0%
GGTGGAGAGGGTGGAGATGG+TGG - chr4.1:26380205-26380224 None:intergenic 65.0%
GTCCAGCAGTCTTCGCGGAC+GGG - chr4.1:26379827-26379846 None:intergenic 65.0%
GTCGAGGTAGCGTTCACCCC+AGG - chr4.1:26379879-26379898 None:intergenic 65.0%
GTGGACGTCGTTGACGGCGT+CGG - chr4.1:26379945-26379964 None:intergenic 65.0%
TCCACCCTCATCGACGCCTG+GGG + chr4.1:26379860-26379879 MS.gene006689:CDS 65.0%
TCCAGCAGTCTTCGCGGACG+GGG - chr4.1:26379826-26379845 None:intergenic 65.0%
! CGCGGCGGAACGGAGTTGAT+AGG - chr4.1:26379782-26379801 None:intergenic 65.0%
! GGAGAGGGTGGAGATGGTGG+AGG - chr4.1:26380202-26380221 None:intergenic 65.0%
!! GTTCACCCCAGGCGTCGATG+AGG - chr4.1:26379868-26379887 None:intergenic 65.0%
ACCGTCTCCACCGTCGCCTC+CGG + chr4.1:26380222-26380241 MS.gene006689:CDS 70.0%
CATCCGGTCGGTCCCCGATC+CGG + chr4.1:26380259-26380278 MS.gene006689:CDS 70.0%
CGACGGAAGACGCGGCGGAA+CGG - chr4.1:26379792-26379811 None:intergenic 70.0%
CGACGGTGGAGACGGTGGAG+AGG - chr4.1:26380218-26380237 None:intergenic 70.0%
GGCGGCGTGGACGTCGTTGA+CGG - chr4.1:26379951-26379970 None:intergenic 70.0%
GGTGGAGACGGTGGAGAGGG+TGG - chr4.1:26380214-26380233 None:intergenic 70.0%
GTCAACGACGTCCACGCCGC+CGG + chr4.1:26379950-26379969 MS.gene006689:CDS 70.0%
GTTCCGGATCGGGGACCGAC+CGG - chr4.1:26380265-26380284 None:intergenic 70.0%
TCCCCGTCCGCGAAGACTGC+TGG + chr4.1:26379822-26379841 MS.gene006689:CDS 70.0%
!! ACCCCAGGCGTCGATGAGGG+TGG - chr4.1:26379864-26379883 None:intergenic 70.0%
ATCCACGCCGGAGGCGACGG+TGG - chr4.1:26380232-26380251 None:intergenic 75.0%
GCCGGAGGCGACGGTGGAGA+CGG - chr4.1:26380226-26380245 None:intergenic 75.0%
GGAGGCGACGGTGGAGACGG+TGG - chr4.1:26380223-26380242 None:intergenic 75.0%
! CTCCACCGTCGCCTCCGGCG+TGG + chr4.1:26380227-26380246 MS.gene006689:CDS 80.0%
! GGCGTTCGCGGCGGCTGCTG+CGG + chr4.1:26380342-26380361 MS.gene006689:CDS 80.0%
! GTTCGCGGCGGCTGCTGCGG+CGG + chr4.1:26380345-26380364 MS.gene006689:CDS 80.0%
! GGCTGCTGCGGCGGCGGCTG+AGG + chr4.1:26380354-26380373 MS.gene006689:CDS 85.0%
! CGCGGCGGCTGCTGCGGCGG+CGG + chr4.1:26380348-26380367 MS.gene006689:CDS 90.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 26379752 26380693 26379752 ID=MS.gene006689
chr4.1 mRNA 26379752 26380693 26379752 ID=MS.gene006689.t1;Parent=MS.gene006689
chr4.1 exon 26379752 26380693 26379752 ID=MS.gene006689.t1.exon1;Parent=MS.gene006689.t1
chr4.1 CDS 26379752 26380693 26379752 ID=cds.MS.gene006689.t1;Parent=MS.gene006689.t1
Gene Sequence

>MS.gene006689

ATGGACATCATCGCCGGAGCTCCGTCACCTATCAACTCCGTTCCGCCGCGTCTTCCGTCGTCATCGCCGTTCCCCGTCCGCGAAGACTGCTGGACCGAAGACGCAACTTCCACCCTCATCGACGCCTGGGGTGAACGCTACCTCGACCTTAACCGCGGTAACCTTCGTCAGAAAACTTGGCAAGAGGTTGCCGACGCCGTCAACGACGTCCACGCCGCCGGTAACAAGAAAGCGCGACGTACCGACGTTCAGTGCAAAAACCGAATCGACACGTTAAAGAAGAAGTACAAGATCGAGAAAGCTAGGGTTTCCGAATCCGACGGCGGTTACCAGAGTCCCTGGCCGTTTTTCACTCGTCTTGACGTTCTCATCGGCGATACTTTTCCGGTCAAAAAACTCTCCCCGCCGGTGAATGTACGGTCTACTCCAACCGTCGTCAAACGTCAACCTCCACCATCTCCACCCTCTCCACCGTCTCCACCGTCGCCTCCGGCGTGGATAATCTCTCATCCGGTCGGTCCCCGATCCGGAACACAAAAACGTCCGGCAATGGCGAAAAGAGACGAAGCATCGTTCCGGCGGAATTTCTCGGCGTTCGCGGCGGCTGCTGCGGCGGCGGCTGAGGCAGAAAGTGTGGAGTCAGAGGAATGGAGGGGGAAGAAAGGAAGAGAAAACGATGGGACCCATAAGGAGTTTGGTTTCAGAGAGCTCGCTCAGGCTATAGAGAGATTCAGTGAAGTATATGAAAGAGTTGAAGCTTCAAAACAGAGACAAATGGTGGAATTGGAGAAGCAGAGGATGCAGTTTGTGAAGGATTTGGAGTATCAGAGAATGCAGTTATACATGGAAACGCAGGTTCAGCTTCAGAAAATCAAACGCACTAAACGTGCTTCTGGTTCCGGTGAGCTTAACCTGTTTCAAATTTATGATCATTGTATTTGA
Protein sequence

>MS.gene006689.t1

MDIIAGAPSPINSVPPRLPSSSPFPVREDCWTEDATSTLIDAWGERYLDLNRGNLRQKTWQEVADAVNDVHAAGNKKARRTDVQCKNRIDTLKKKYKIEKARVSESDGGYQSPWPFFTRLDVLIGDTFPVKKLSPPVNVRSTPTVVKRQPPPSPPSPPSPPSPPAWIISHPVGPRSGTQKRPAMAKRDEASFRRNFSAFAAAAAAAAEAESVESEEWRGKKGRENDGTHKEFGFRELAQAIERFSEVYERVEASKQRQMVELEKQRMQFVKDLEYQRMQLYMETQVQLQKIKRTKRASGSGELNLFQIYDHCI