Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006770.t1 | XP_003607708.1 | 96 | 445 | 9 | 3 | 1 | 444 | 1 | 437 | 6.80E-223 | 783.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006770.t1 | G7JF39 | 96.0 | 445 | 9 | 3 | 1 | 444 | 1 | 437 | 4.9e-223 | 783.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene006770.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006770.t1 | MTR_4g081420 | 97.303 | 445 | 3 | 3 | 1 | 444 | 1 | 437 | 0.0 | 869 |
| MS.gene006770.t1 | MTR_2g010860 | 43.155 | 431 | 186 | 10 | 17 | 443 | 1 | 376 | 2.26e-98 | 300 |
| MS.gene006770.t1 | MTR_2g010870 | 54.513 | 277 | 112 | 5 | 180 | 444 | 82 | 356 | 4.95e-90 | 278 |
| MS.gene006770.t1 | MTR_1g024980 | 38.837 | 430 | 191 | 13 | 18 | 441 | 35 | 398 | 5.74e-73 | 235 |
| MS.gene006770.t1 | MTR_3g072920 | 51.653 | 242 | 103 | 7 | 207 | 441 | 214 | 448 | 4.04e-70 | 229 |
| MS.gene006770.t1 | MTR_3g463270 | 44.583 | 240 | 116 | 8 | 212 | 441 | 154 | 386 | 5.71e-55 | 187 |
| MS.gene006770.t1 | MTR_5g012220 | 34.375 | 224 | 94 | 7 | 234 | 443 | 105 | 289 | 7.72e-30 | 117 |
| MS.gene006770.t1 | MTR_4g101450 | 35.238 | 210 | 100 | 6 | 237 | 443 | 98 | 274 | 2.73e-27 | 110 |
| MS.gene006770.t1 | MTR_5g094440 | 32.864 | 213 | 129 | 5 | 231 | 441 | 68 | 268 | 3.53e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006770.t1 | AT5G54630 | 69.481 | 462 | 96 | 11 | 17 | 443 | 20 | 471 | 0.0 | 589 |
| MS.gene006770.t1 | AT4G27240 | 64.450 | 436 | 117 | 6 | 14 | 443 | 27 | 430 | 0.0 | 531 |
| MS.gene006770.t1 | AT4G27240 | 62.990 | 408 | 113 | 6 | 14 | 415 | 27 | 402 | 1.13e-167 | 478 |
| MS.gene006770.t1 | AT1G11490 | 39.819 | 442 | 173 | 16 | 17 | 443 | 1 | 364 | 2.65e-78 | 248 |
| MS.gene006770.t1 | AT1G11490 | 39.819 | 442 | 173 | 16 | 17 | 443 | 1 | 364 | 2.65e-78 | 248 |
| MS.gene006770.t1 | AT1G75710 | 46.875 | 256 | 109 | 5 | 212 | 443 | 206 | 458 | 1.23e-61 | 207 |
| MS.gene006770.t1 | AT2G29660 | 41.634 | 257 | 125 | 7 | 204 | 441 | 120 | 370 | 1.93e-48 | 170 |
| MS.gene006770.t1 | AT4G22560 | 38.605 | 215 | 86 | 9 | 231 | 441 | 89 | 261 | 9.01e-29 | 114 |
| MS.gene006770.t1 | AT1G62520 | 38.863 | 211 | 96 | 7 | 235 | 443 | 100 | 279 | 3.76e-28 | 113 |
| MS.gene006770.t1 | AT4G12450 | 33.180 | 217 | 96 | 7 | 235 | 441 | 97 | 274 | 6.21e-23 | 98.6 |
Find 77 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATAACTTCATGAGTTAT+TGG | 0.157846 | 4.1:+25515567 | None:intergenic |
| TCAAACTGGATTTGATTCTT+TGG | 0.236240 | 4.1:-25514231 | MS.gene006770:CDS |
| AAAAGAAGAAGAAGCATTAA+AGG | 0.252265 | 4.1:-25515844 | MS.gene006770:CDS |
| CTTGGCAGTTACTGAACTTT+TGG | 0.259869 | 4.1:-25514753 | MS.gene006770:intron |
| GACACCTAGGATGTTTCTTC+TGG | 0.309460 | 4.1:+25514561 | None:intergenic |
| GGGTTAAAGTAATGCATTGT+AGG | 0.377644 | 4.1:+25515396 | None:intergenic |
| ACCACAGTAGCTTGTTCTCT+TGG | 0.380190 | 4.1:-25514503 | MS.gene006770:CDS |
| TCTCTTGAAACAGATTCTAA+TGG | 0.386384 | 4.1:-25515270 | MS.gene006770:CDS |
| GCTTGTTCTCTTGGTCTCAA+TGG | 0.401559 | 4.1:-25514494 | MS.gene006770:CDS |
| AAAATATTTACCAGCATGCT+TGG | 0.405089 | 4.1:+25515173 | None:intergenic |
| AAGGAGTTGAAAGGTGGAAT+AGG | 0.409316 | 4.1:-25514401 | MS.gene006770:CDS |
| GTTGTGTTTGTAGAATCATT+AGG | 0.411461 | 4.1:-25514442 | MS.gene006770:CDS |
| TAATTGCTGGTAGGGTTCAT+AGG | 0.416479 | 4.1:-25514283 | MS.gene006770:CDS |
| ACTGGATTTGATTCTTTGGC+TGG | 0.418812 | 4.1:-25514227 | MS.gene006770:CDS |
| CAAGAAATGGCATCTCAAAC+TGG | 0.425597 | 4.1:-25514245 | MS.gene006770:CDS |
| GTGGTGTTCATTCAAGTAAT+AGG | 0.426313 | 4.1:-25515296 | MS.gene006770:CDS |
| AAAAGAAAAGGTGATTTCCT+TGG | 0.433309 | 4.1:+25515348 | None:intergenic |
| ACTTGAAAACATTCAAGAAA+TGG | 0.445655 | 4.1:-25514258 | MS.gene006770:CDS |
| GTGGTGAACAGTTTAACAAA+TGG | 0.446542 | 4.1:-25515221 | MS.gene006770:CDS |
| TAATGAACCTTCACTTAGAA+AGG | 0.446634 | 4.1:-25514324 | MS.gene006770:CDS |
| CCTCCAGGACCAGGTGTACC+AGG | 0.455632 | 4.1:+25515423 | None:intergenic |
| TCACTGCTTCCTATAGATCT+TGG | 0.456992 | 4.1:+25515600 | None:intergenic |
| GATTCTTTGGCTGGTAAAGT+AGG | 0.457682 | 4.1:-25514218 | MS.gene006770:CDS |
| GTTGAAGAAGTCCTAAAAGA+AGG | 0.458747 | 4.1:+25515375 | None:intergenic |
| AGTTGCAGTCCAAGATCTAT+AGG | 0.459011 | 4.1:-25515609 | MS.gene006770:CDS |
| AAAGAAGAAGAAGCATTAAA+GGG | 0.464851 | 4.1:-25515843 | MS.gene006770:CDS |
| ATGCAGAGTAATTGCTGGTA+GGG | 0.484307 | 4.1:-25514291 | MS.gene006770:CDS |
| TACCAGCATGCTTGGAGAGA+TGG | 0.491155 | 4.1:+25515181 | None:intergenic |
| GGTGGTTCTTCAACTTATGT+TGG | 0.492368 | 4.1:-25515456 | MS.gene006770:CDS |
| ATAGTATGCAGAGTAATTGC+TGG | 0.496317 | 4.1:-25514296 | MS.gene006770:CDS |
| TGGTGAACAGTTTAACAAAT+GGG | 0.498621 | 4.1:-25515220 | MS.gene006770:CDS |
| GAGGAAGATCAGGTTGTTCA+AGG | 0.499461 | 4.1:-25515692 | MS.gene006770:CDS |
| GACCCTTCTGACAAAAGAAA+AGG | 0.499545 | 4.1:+25515336 | None:intergenic |
| ATCAATGCCTTTCTAAGTGA+AGG | 0.505745 | 4.1:+25514317 | None:intergenic |
| GATCTTGGACTGCAACTTGG+TGG | 0.516239 | 4.1:+25515615 | None:intergenic |
| TTTGGATCATGTACATCTGA+TGG | 0.518690 | 4.1:+25515765 | None:intergenic |
| TGCATTGTAGGGTGTCCTCC+AGG | 0.520201 | 4.1:+25515408 | None:intergenic |
| CATCCTAGGTGTCTAGCTGA+TGG | 0.521265 | 4.1:-25514551 | MS.gene006770:CDS |
| CACCATCTCTCCAAGCATGC+TGG | 0.523843 | 4.1:-25515183 | MS.gene006770:intron |
| AAACAAGGAAGAAGAGCTCT+AGG | 0.526190 | 4.1:+25514158 | None:intergenic |
| TTCAAAGAAAACCACACTGT+TGG | 0.527957 | 4.1:+25515813 | None:intergenic |
| AAATTATATGCAGGACAAGC+TGG | 0.530091 | 4.1:-25514703 | MS.gene006770:CDS |
| AGGTCTTTATTCAAACATTG+AGG | 0.530157 | 4.1:-25514198 | MS.gene006770:CDS |
| AGATTCATCAAGGAAAATAG+TGG | 0.534245 | 4.1:-25514726 | MS.gene006770:CDS |
| GTAGGGTGTCCTCCAGGACC+AGG | 0.534778 | 4.1:+25515414 | None:intergenic |
| AATCTAAAAGATGTTATCCA+TGG | 0.536862 | 4.1:-25515660 | MS.gene006770:CDS |
| AGAAAAGGTGATTTCCTTGG+AGG | 0.540659 | 4.1:+25515351 | None:intergenic |
| AGACCTGGTACACCTGGTCC+TGG | 0.541493 | 4.1:-25515426 | MS.gene006770:CDS |
| ATAGATCTTGGACTGCAACT+TGG | 0.545029 | 4.1:+25515612 | None:intergenic |
| CACAACATCTACAAGTGGAA+GGG | 0.551250 | 4.1:-25514372 | MS.gene006770:CDS |
| GGTTAAAGTAATGCATTGTA+GGG | 0.557734 | 4.1:+25515397 | None:intergenic |
| GGACTTCTTCAACTCCTCCA+AGG | 0.558541 | 4.1:-25515365 | MS.gene006770:CDS |
| TATGCAGAGTAATTGCTGGT+AGG | 0.562940 | 4.1:-25514292 | MS.gene006770:CDS |
| ACTTTAAGACCTGGTACACC+TGG | 0.565382 | 4.1:-25515432 | MS.gene006770:CDS |
| TCACAACATCTACAAGTGGA+AGG | 0.571126 | 4.1:-25514373 | MS.gene006770:CDS |
| AACTCCAGAAGAAACATCCT+AGG | 0.571187 | 4.1:-25514565 | MS.gene006770:CDS |
| AAATAGTGGAAATTATATGC+AGG | 0.573880 | 4.1:-25514712 | MS.gene006770:CDS |
| TTGAAGAAGTCCTAAAAGAA+GGG | 0.580726 | 4.1:+25515376 | None:intergenic |
| TATGTTGGTACTTTAAGACC+TGG | 0.582691 | 4.1:-25515441 | MS.gene006770:CDS |
| TCTGCTAAGAAGGAGTTGAA+AGG | 0.586835 | 4.1:-25514410 | MS.gene006770:CDS |
| CAAGAAGGGATTAACAGTGG+TGG | 0.589162 | 4.1:-25515507 | MS.gene006770:CDS |
| ATTTGAAGAGTACAGAGAGA+TGG | 0.595060 | 4.1:-25514606 | MS.gene006770:CDS |
| GTTTGTAGAATCATTAGGAG+TGG | 0.602627 | 4.1:-25514437 | MS.gene006770:CDS |
| TTGCAAATTACCACAAAACA+AGG | 0.607767 | 4.1:+25514143 | None:intergenic |
| TTTCCATCAGCTAGACACCT+AGG | 0.608502 | 4.1:+25514548 | None:intergenic |
| GCTAAGAAGGAGTTGAAAGG+TGG | 0.609494 | 4.1:-25514407 | MS.gene006770:CDS |
| CTCTCTCTATTCTGCCACAG+TGG | 0.632803 | 4.1:+25514666 | None:intergenic |
| GCTAGTGGTGGTAGTAGTAG+TGG | 0.635609 | 4.1:-25515477 | MS.gene006770:CDS |
| TTTCAAGAAGGGATTAACAG+TGG | 0.654520 | 4.1:-25515510 | MS.gene006770:CDS |
| AGTGGTGGTAGTAGTAGTGG+TGG | 0.661261 | 4.1:-25515474 | MS.gene006770:CDS |
| CCTGGTACACCTGGTCCTGG+AGG | 0.665004 | 4.1:-25515423 | MS.gene006770:CDS |
| ACCAAGAGAACAAGCTACTG+TGG | 0.672385 | 4.1:+25514502 | None:intergenic |
| ACTGTTACTTGTCACAAATG+TGG | 0.687396 | 4.1:-25515240 | MS.gene006770:CDS |
| AGGGTAATATGCCAACAGTG+TGG | 0.706544 | 4.1:-25515824 | MS.gene006770:CDS |
| GGTGGTAACAATGCTAGTGG+TGG | 0.732313 | 4.1:-25515489 | MS.gene006770:CDS |
| AGTGGTGGTAACAATGCTAG+TGG | 0.733810 | 4.1:-25515492 | MS.gene006770:CDS |
| TTAAAGTCAGAAAACCACTG+TGG | 0.819817 | 4.1:-25514680 | MS.gene006770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTTCAAAATATCT+AGG | - | chr4.1:25515063-25515082 | MS.gene006770:intron | 10.0% |
| !!! | TTTTTATTAAAAATTCTTCT+TGG | - | chr4.1:25514848-25514867 | MS.gene006770:intron | 10.0% |
| !! | CAAACAATTCTAAATTAAAA+AGG | + | chr4.1:25515030-25515049 | None:intergenic | 15.0% |
| !!! | ATTTTGAAAATAAAATCTGT+TGG | + | chr4.1:25515059-25515078 | None:intergenic | 15.0% |
| !!! | TATGCTATAGAATTTTTTTA+TGG | - | chr4.1:25514930-25514949 | MS.gene006770:intron | 15.0% |
| !! | AAAATAACTTCATGAGTTAT+TGG | + | chr4.1:25514436-25514455 | None:intergenic | 20.0% |
| !! | AATTCTAAATTAAAAAGGCA+TGG | + | chr4.1:25515025-25515044 | None:intergenic | 20.0% |
| ! | AATACTAGGATAAAGTAGAT+TGG | + | chr4.1:25515115-25515134 | None:intergenic | 25.0% |
| ! | AATCTAAAAGATGTTATCCA+TGG | - | chr4.1:25514340-25514359 | MS.gene006770:CDS | 25.0% |
| ! | ACAATCTTAACAAAAAAAGG+AGG | - | chr4.1:25514277-25514296 | MS.gene006770:CDS | 25.0% |
| ! | ACTTGAAAACATTCAAGAAA+TGG | - | chr4.1:25515742-25515761 | MS.gene006770:CDS | 25.0% |
| ! | AGCACAATCTTAACAAAAAA+AGG | - | chr4.1:25514274-25514293 | MS.gene006770:CDS | 25.0% |
| ! | TGTTCAATGTTCAAAATACT+AGG | + | chr4.1:25515129-25515148 | None:intergenic | 25.0% |
| ! | TTTGTGGTCAGAAAAATATT+TGG | + | chr4.1:25514885-25514904 | None:intergenic | 25.0% |
| !! | AAATAGTGGAAATTATATGC+AGG | - | chr4.1:25515288-25515307 | MS.gene006770:CDS | 25.0% |
| !! | ATTACTTTAACCCTTCTTTT+AGG | - | chr4.1:25514614-25514633 | MS.gene006770:CDS | 25.0% |
| !! | TAAAAATTCTTCTTGGCTTT+AGG | - | chr4.1:25514855-25514874 | MS.gene006770:intron | 25.0% |
| !!! | AAAAGAAGAAGAAGCATTAA+AGG | - | chr4.1:25514156-25514175 | MS.gene006770:CDS | 25.0% |
| !!! | AAAGAAGAAGAAGCATTAAA+GGG | - | chr4.1:25514157-25514176 | MS.gene006770:CDS | 25.0% |
| !!! | AAATCCACACTTTTTGAATT+TGG | - | chr4.1:25514974-25514993 | MS.gene006770:intron | 25.0% |
| !!! | AAGTTATTTTGAGTAACTCA+AGG | - | chr4.1:25514446-25514465 | MS.gene006770:CDS | 25.0% |
| !!! | AATCCACACTTTTTGAATTT+GGG | - | chr4.1:25514975-25514994 | MS.gene006770:intron | 25.0% |
| !!! | AGAAAAATTTGTTTTTCCCT+TGG | - | chr4.1:25515229-25515248 | MS.gene006770:CDS | 25.0% |
| !!! | ATTTCTTGAATGTTTTCAAG+TGG | + | chr4.1:25515743-25515762 | None:intergenic | 25.0% |
| !!! | CTAAAGTTTTTTGCATATTG+TGG | + | chr4.1:25515370-25515389 | None:intergenic | 25.0% |
| !!! | GCTATAGAATTTTTTTATGG+TGG | - | chr4.1:25514933-25514952 | MS.gene006770:intron | 25.0% |
| !!! | TAATGCTTCTTCTTCTTTTT+TGG | + | chr4.1:25514155-25514174 | None:intergenic | 25.0% |
| AAAAGAAAAGGTGATTTCCT+TGG | + | chr4.1:25514655-25514674 | None:intergenic | 30.0% | |
| AAAATATTTACCAGCATGCT+TGG | + | chr4.1:25514830-25514849 | None:intergenic | 30.0% | |
| AGATTCATCAAGGAAAATAG+TGG | - | chr4.1:25515274-25515293 | MS.gene006770:CDS | 30.0% | |
| AGCATATCAGATAAAGACTA+TGG | + | chr4.1:25514916-25514935 | None:intergenic | 30.0% | |
| AGGATAAAGTAGATTGGAAA+AGG | + | chr4.1:25515109-25515128 | None:intergenic | 30.0% | |
| AGGTCTTTATTCAAACATTG+AGG | - | chr4.1:25515802-25515821 | MS.gene006770:CDS | 30.0% | |
| ATCTTAACAAAAAAAGGAGG+AGG | - | chr4.1:25514280-25514299 | MS.gene006770:CDS | 30.0% | |
| ATGTACATGATCCAAAAACA+AGG | - | chr4.1:25514242-25514261 | MS.gene006770:CDS | 30.0% | |
| GGATAAAGTAGATTGGAAAA+GGG | + | chr4.1:25515108-25515127 | None:intergenic | 30.0% | |
| GGTTAAAGTAATGCATTGTA+GGG | + | chr4.1:25514606-25514625 | None:intergenic | 30.0% | |
| GTTGTGTTTGTAGAATCATT+AGG | - | chr4.1:25515558-25515577 | MS.gene006770:CDS | 30.0% | |
| TAATGAACCTTCACTTAGAA+AGG | - | chr4.1:25515676-25515695 | MS.gene006770:CDS | 30.0% | |
| TCAAACTGGATTTGATTCTT+TGG | - | chr4.1:25515769-25515788 | MS.gene006770:CDS | 30.0% | |
| TCTCTTGAAACAGATTCTAA+TGG | - | chr4.1:25514730-25514749 | MS.gene006770:CDS | 30.0% | |
| TGGTGAACAGTTTAACAAAT+GGG | - | chr4.1:25514780-25514799 | MS.gene006770:intron | 30.0% | |
| TTGAAGAAGTCCTAAAAGAA+GGG | + | chr4.1:25514627-25514646 | None:intergenic | 30.0% | |
| TTGCAAATTACCACAAAACA+AGG | + | chr4.1:25515860-25515879 | None:intergenic | 30.0% | |
| ! | AATGAACTTTTACGGTTCTA+TGG | - | chr4.1:25515473-25515492 | MS.gene006770:CDS | 30.0% |
| ! | CTGATGGAAATGAACTTTTA+CGG | - | chr4.1:25515465-25515484 | MS.gene006770:CDS | 30.0% |
| ! | TTTTCTGACCACAAACTTTT+TGG | - | chr4.1:25514890-25514909 | MS.gene006770:intron | 30.0% |
| !! | CAGAATAGAGAGAGTTTTAA+AGG | - | chr4.1:25515343-25515362 | MS.gene006770:CDS | 30.0% |
| !!! | AAAATCACTGGTTTTCAAGA+AGG | - | chr4.1:25514478-25514497 | MS.gene006770:CDS | 30.0% |
| !!! | AAATCACTGGTTTTCAAGAA+GGG | - | chr4.1:25514479-25514498 | MS.gene006770:CDS | 30.0% |
| !!! | CTTAAATGCTTCCTTGTTTT+TGG | + | chr4.1:25514256-25514275 | None:intergenic | 30.0% |
| AAAAGTTCAGTAACTGCCAA+GGG | + | chr4.1:25515248-25515267 | None:intergenic | 35.0% | |
| AAATTATATGCAGGACAAGC+TGG | - | chr4.1:25515297-25515316 | MS.gene006770:CDS | 35.0% | |
| AGGTGTGAGTTAAAAATCAC+TGG | - | chr4.1:25514466-25514485 | MS.gene006770:CDS | 35.0% | |
| AGTCCCAAATTCAAAAAGTG+TGG | + | chr4.1:25514981-25515000 | None:intergenic | 35.0% | |
| ATAGTATGCAGAGTAATTGC+TGG | - | chr4.1:25515704-25515723 | MS.gene006770:CDS | 35.0% | |
| ATCAATGCCTTTCTAAGTGA+AGG | + | chr4.1:25515686-25515705 | None:intergenic | 35.0% | |
| GGGTTAAAGTAATGCATTGT+AGG | + | chr4.1:25514607-25514626 | None:intergenic | 35.0% | |
| GTGGTGAACAGTTTAACAAA+TGG | - | chr4.1:25514779-25514798 | MS.gene006770:intron | 35.0% | |
| GTGGTGTTCATTCAAGTAAT+AGG | - | chr4.1:25514704-25514723 | MS.gene006770:CDS | 35.0% | |
| GTTGAAGAAGTCCTAAAAGA+AGG | + | chr4.1:25514628-25514647 | None:intergenic | 35.0% | |
| GTTTGTAGAATCATTAGGAG+TGG | - | chr4.1:25515563-25515582 | MS.gene006770:CDS | 35.0% | |
| TTAAAGTCAGAAAACCACTG+TGG | - | chr4.1:25515320-25515339 | MS.gene006770:CDS | 35.0% | |
| TTAACAAAAAAAGGAGGAGG+AGG | - | chr4.1:25514283-25514302 | MS.gene006770:CDS | 35.0% | |
| TTCAAAGAAAACCACACTGT+TGG | + | chr4.1:25514190-25514209 | None:intergenic | 35.0% | |
| TTTCAAGAAGGGATTAACAG+TGG | - | chr4.1:25514490-25514509 | MS.gene006770:CDS | 35.0% | |
| TTTGGATCATGTACATCTGA+TGG | + | chr4.1:25514238-25514257 | None:intergenic | 35.0% | |
| ! | ACTGTTACTTGTCACAAATG+TGG | - | chr4.1:25514760-25514779 | MS.gene006770:intron | 35.0% |
| ! | ATTTGAAGAGTACAGAGAGA+TGG | - | chr4.1:25515394-25515413 | MS.gene006770:CDS | 35.0% |
| ! | CAATATGTCTTTTGCTTCCA+TGG | + | chr4.1:25514360-25514379 | None:intergenic | 35.0% |
| ! | CACCTTTTCTTTTGTCAGAA+GGG | - | chr4.1:25514662-25514681 | MS.gene006770:CDS | 35.0% |
| ! | GTTTTCACAACATCTACAAG+TGG | - | chr4.1:25515623-25515642 | MS.gene006770:CDS | 35.0% |
| ! | TCACCTTTTCTTTTGTCAGA+AGG | - | chr4.1:25514661-25514680 | MS.gene006770:CDS | 35.0% |
| !! | TATGTTGGTACTTTAAGACC+TGG | - | chr4.1:25514559-25514578 | MS.gene006770:CDS | 35.0% |
| !! | TTTTGGAAGGAGATTCATCA+AGG | - | chr4.1:25515264-25515283 | MS.gene006770:CDS | 35.0% |
| AAACAAGGAAGAAGAGCTCT+AGG | + | chr4.1:25515845-25515864 | None:intergenic | 40.0% | |
| AACTCCAGAAGAAACATCCT+AGG | - | chr4.1:25515435-25515454 | MS.gene006770:CDS | 40.0% | |
| AAGGAGTTGAAAGGTGGAAT+AGG | - | chr4.1:25515599-25515618 | MS.gene006770:CDS | 40.0% | |
| ACTGGATTTGATTCTTTGGC+TGG | - | chr4.1:25515773-25515792 | MS.gene006770:CDS | 40.0% | |
| AGAAAAGGTGATTTCCTTGG+AGG | + | chr4.1:25514652-25514671 | None:intergenic | 40.0% | |
| AGTTGCAGTCCAAGATCTAT+AGG | - | chr4.1:25514391-25514410 | MS.gene006770:CDS | 40.0% | |
| ATAGATCTTGGACTGCAACT+TGG | + | chr4.1:25514391-25514410 | None:intergenic | 40.0% | |
| ATGCAGAGTAATTGCTGGTA+GGG | - | chr4.1:25515709-25515728 | MS.gene006770:CDS | 40.0% | |
| CAAAAGTTCAGTAACTGCCA+AGG | + | chr4.1:25515249-25515268 | None:intergenic | 40.0% | |
| CAAGAAATGGCATCTCAAAC+TGG | - | chr4.1:25515755-25515774 | MS.gene006770:CDS | 40.0% | |
| CACAACATCTACAAGTGGAA+GGG | - | chr4.1:25515628-25515647 | MS.gene006770:CDS | 40.0% | |
| GACCCTTCTGACAAAAGAAA+AGG | + | chr4.1:25514667-25514686 | None:intergenic | 40.0% | |
| GACTATGGCCAAAAAGTTTG+TGG | + | chr4.1:25514901-25514920 | None:intergenic | 40.0% | |
| GATTCTTTGGCTGGTAAAGT+AGG | - | chr4.1:25515782-25515801 | MS.gene006770:CDS | 40.0% | |
| GGTGGTTCTTCAACTTATGT+TGG | - | chr4.1:25514544-25514563 | MS.gene006770:CDS | 40.0% | |
| TAATTGCTGGTAGGGTTCAT+AGG | - | chr4.1:25515717-25515736 | MS.gene006770:CDS | 40.0% | |
| TATGCAGAGTAATTGCTGGT+AGG | - | chr4.1:25515708-25515727 | MS.gene006770:CDS | 40.0% | |
| TCACAACATCTACAAGTGGA+AGG | - | chr4.1:25515627-25515646 | MS.gene006770:CDS | 40.0% | |
| TCACTGCTTCCTATAGATCT+TGG | + | chr4.1:25514403-25514422 | None:intergenic | 40.0% | |
| TCTGCTAAGAAGGAGTTGAA+AGG | - | chr4.1:25515590-25515609 | MS.gene006770:CDS | 40.0% | |
| ! | CTTGGCAGTTACTGAACTTT+TGG | - | chr4.1:25515247-25515266 | MS.gene006770:CDS | 40.0% |
| ! | CTTTTGTCAGAAGGGTCTAA+TGG | - | chr4.1:25514670-25514689 | MS.gene006770:CDS | 40.0% |
| ! | GAAGGGTCTAATGGTTTTCA+TGG | - | chr4.1:25514679-25514698 | MS.gene006770:CDS | 40.0% |
| ! | GAGTGGTTTTTCTGCTAAGA+AGG | - | chr4.1:25515580-25515599 | MS.gene006770:CDS | 40.0% |
| ! | GCAGTTACTGAACTTTTGGA+AGG | - | chr4.1:25515251-25515270 | MS.gene006770:CDS | 40.0% |
| ! | TCTAATGGTTTTCATGGTGG+TGG | - | chr4.1:25514685-25514704 | MS.gene006770:CDS | 40.0% |
| !!! | AGCTCTTCTTCCTTGTTTTG+TGG | - | chr4.1:25515847-25515866 | MS.gene006770:CDS | 40.0% |
| ACAAAAAAAGGAGGAGGAGG+AGG | - | chr4.1:25514286-25514305 | MS.gene006770:CDS | 45.0% | |
| ACCAAGAGAACAAGCTACTG+TGG | + | chr4.1:25515501-25515520 | None:intergenic | 45.0% | |
| AGGGTAATATGCCAACAGTG+TGG | - | chr4.1:25514176-25514195 | MS.gene006770:CDS | 45.0% | |
| AGTGGTGGTAACAATGCTAG+TGG | - | chr4.1:25514508-25514527 | MS.gene006770:CDS | 45.0% | |
| CAAGAAGGGATTAACAGTGG+TGG | - | chr4.1:25514493-25514512 | MS.gene006770:CDS | 45.0% | |
| GACACCTAGGATGTTTCTTC+TGG | + | chr4.1:25515442-25515461 | None:intergenic | 45.0% | |
| GCTAAGAAGGAGTTGAAAGG+TGG | - | chr4.1:25515593-25515612 | MS.gene006770:CDS | 45.0% | |
| GCTTGTTCTCTTGGTCTCAA+TGG | - | chr4.1:25515506-25515525 | MS.gene006770:CDS | 45.0% | |
| TTTCCATCAGCTAGACACCT+AGG | + | chr4.1:25515455-25515474 | None:intergenic | 45.0% | |
| ! | GAGGAAGATCAGGTTGTTCA+AGG | - | chr4.1:25514308-25514327 | MS.gene006770:CDS | 45.0% |
| ! | GGGTCTAATGGTTTTCATGG+TGG | - | chr4.1:25514682-25514701 | MS.gene006770:CDS | 45.0% |
| !! | ACCACAGTAGCTTGTTCTCT+TGG | - | chr4.1:25515497-25515516 | MS.gene006770:CDS | 45.0% |
| !! | ACTTTAAGACCTGGTACACC+TGG | - | chr4.1:25514568-25514587 | MS.gene006770:CDS | 45.0% |
| AAAAAAGGAGGAGGAGGAGG+AGG | - | chr4.1:25514289-25514308 | MS.gene006770:CDS | 50.0% | |
| AGTGGTGGTAGTAGTAGTGG+TGG | - | chr4.1:25514526-25514545 | MS.gene006770:CDS | 50.0% | |
| CATCCTAGGTGTCTAGCTGA+TGG | - | chr4.1:25515449-25515468 | MS.gene006770:CDS | 50.0% | |
| CTCTCTCTATTCTGCCACAG+TGG | + | chr4.1:25515337-25515356 | None:intergenic | 50.0% | |
| GATCTTGGACTGCAACTTGG+TGG | + | chr4.1:25514388-25514407 | None:intergenic | 50.0% | |
| GCTAGTGGTGGTAGTAGTAG+TGG | - | chr4.1:25514523-25514542 | MS.gene006770:CDS | 50.0% | |
| GGACTTCTTCAACTCCTCCA+AGG | - | chr4.1:25514635-25514654 | MS.gene006770:CDS | 50.0% | |
| GGTGGTAACAATGCTAGTGG+TGG | - | chr4.1:25514511-25514530 | MS.gene006770:CDS | 50.0% | |
| TACCAGCATGCTTGGAGAGA+TGG | + | chr4.1:25514822-25514841 | None:intergenic | 50.0% | |
| CACCATCTCTCCAAGCATGC+TGG | - | chr4.1:25514817-25514836 | MS.gene006770:intron | 55.0% | |
| ! | TGCATTGTAGGGTGTCCTCC+AGG | + | chr4.1:25514595-25514614 | None:intergenic | 55.0% |
| AGACCTGGTACACCTGGTCC+TGG | - | chr4.1:25514574-25514593 | MS.gene006770:CDS | 60.0% | |
| GGAGGAGGAGGAGGAAGATC+AGG | - | chr4.1:25514298-25514317 | MS.gene006770:CDS | 60.0% | |
| CCTCCAGGACCAGGTGTACC+AGG | + | chr4.1:25514580-25514599 | None:intergenic | 65.0% | |
| CCTGGTACACCTGGTCCTGG+AGG | - | chr4.1:25514577-25514596 | MS.gene006770:CDS | 65.0% | |
| ! | GTAGGGTGTCCTCCAGGACC+AGG | + | chr4.1:25514589-25514608 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 25514136 | 25515886 | 25514136 | ID=MS.gene006770 |
| chr4.1 | mRNA | 25514136 | 25515886 | 25514136 | ID=MS.gene006770.t1;Parent=MS.gene006770 |
| chr4.1 | exon | 25515184 | 25515886 | 25515184 | ID=MS.gene006770.t1.exon1;Parent=MS.gene006770.t1 |
| chr4.1 | CDS | 25515184 | 25515886 | 25515184 | ID=cds.MS.gene006770.t1;Parent=MS.gene006770.t1 |
| chr4.1 | exon | 25514136 | 25514767 | 25514136 | ID=MS.gene006770.t1.exon2;Parent=MS.gene006770.t1 |
| chr4.1 | CDS | 25514136 | 25514767 | 25514136 | ID=cds.MS.gene006770.t1;Parent=MS.gene006770.t1 |
| Gene Sequence |
| Protein sequence |
