AlfalfaGEDB | MS.gene006787

M. sativa cultivar XinJiangDaYe / MS.gene006787

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008037 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022414 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048544 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00954.23 PF01453.27 PF07714.20 PF08276.14 PF11883.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006787.t1	XP_024638542.1	92	817	49	1	1	801	1	817	0.00E+00	1531.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006787.t1	O81905	44.5	832	402	10	21	801	28	850	9.3e-203	708.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006787.t1	A0A072UM50	91.8	817	49	2	1	801	1	815	0.0e+00	1521.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene006787.t1	MTR_4g081665	91.799	817	49	2	1	801	1	815	1459
MS.gene006787.t1	MTR_4g081650	86.553	818	92	3	1	801	1	817	1408
MS.gene006787.t1	MTR_4g081750	87.126	668	64	2	150	801	501	1162	1176
MS.gene006787.t1	MTR_4g081750	87.623	509	43	4	1	492	1	506	879
MS.gene006787.t1	MTR_4g081655	54.444	810	325	8	24	801	24	821	890
MS.gene006787.t1	MTR_4g081675	56.799	831	321	12	1	801	1	823	889
MS.gene006787.t1	MTR_4g081685	55.716	831	326	12	4	801	3	824	882
MS.gene006787.t1	MTR_8g465990	55.947	824	326	10	4	801	12	824	874
MS.gene006787.t1	MTR_8g465990	54.080	821	308	8	4	801	12	786	859
MS.gene006787.t1	MTR_4g081640	52.341	833	307	10	3	801	5	781	857

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene006787.t1	AT4G27290	45.345	827	413	10	8	801	9	829	704
MS.gene006787.t1	AT4G21380	45.069	801	383	8	21	773	28	819	701
MS.gene006787.t1	AT4G27290	44.933	819	382	10	8	801	9	783	684
MS.gene006787.t1	AT1G65790	43.373	830	411	10	20	801	25	843	666
MS.gene006787.t1	AT1G65800	43.884	793	386	11	26	769	31	813	661
MS.gene006787.t1	AT1G11340	42.944	822	414	14	26	801	21	833	658
MS.gene006787.t1	AT1G11410	43.044	841	409	16	18	801	25	852	643
MS.gene006787.t1	AT1G11410	43.044	841	409	16	18	801	18	845	643
MS.gene006787.t1	AT1G11410	42.874	828	405	15	31	801	5	821	637
MS.gene006787.t1	AT4G27300	44.403	813	397	18	23	801	24	815	630

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Find 152 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGAGAAGGTGGTTT+TGG	0.253032	4.1:-25331565	MS.gene006787:CDS
AAACGTTTCCACATAATCTG+TGG	0.621532	4.1:-25331056	MS.gene006787:CDS
AAAGAATTAGGCTTCATCTC+TGG	0.489126	4.1:+25332604	None:intergenic
AAATTCAAGCTCAAGTGGGA+AGG	0.598004	4.1:-25330261	MS.gene006787:CDS
AACAGGTATGAAGTTGGGAT+GGG	0.618034	4.1:-25332803	MS.gene006787:intron
AACTCAATAGATTGGTCCCA+AGG	0.580180	4.1:-25332301	MS.gene006787:CDS
AAGAACAAAATTGGAGAAGG+TGG	0.466263	4.1:-25331571	MS.gene006787:CDS
AAGAAGAGGTTTATTACACA+TGG	0.591159	4.1:-25332555	MS.gene006787:CDS
AAGCAAATTCAAGCTCAAGT+GGG	0.659163	4.1:-25330265	MS.gene006787:CDS
AATAACAAAGCTGAAAACGT+CGG	0.672855	4.1:+25330695	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAGAGGTTTATTACACA+TGG	-	chr4.1:25331229-25331248	MS.gene006787:intron	30.0%
AATAACAAAGCTGAAAACGT+CGG	+	chr4.1:25333092-25333111	None:intergenic	30.0%
AATACAAATATAAGTGGAGC+AGG	-	chr4.1:25331664-25331683	MS.gene006787:CDS	30.0%
AATTACAGTTTCTGTAGCTT+TGG	-	chr4.1:25331944-25331963	MS.gene006787:intron	30.0%
ACCAAAGTATATGTAGTATC+TGG	+	chr4.1:25331574-25331593	None:intergenic	30.0%
AGATACTACATATACTTTGG+TGG	-	chr4.1:25331573-25331592	MS.gene006787:CDS	30.0%
ATCGATATCAAACTTATTCC+AGG	-	chr4.1:25331718-25331737	MS.gene006787:intron	30.0%
ATTACAGTTTCTGTAGCTTT+GGG	-	chr4.1:25331945-25331964	MS.gene006787:intron	30.0%
ATTGTTGACAAATCAAGCAA+TGG	+	chr4.1:25332165-25332184	None:intergenic	30.0%
CAAAGAAGATAAAGTTAGCA+TGG	+	chr4.1:25333237-25333256	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	25330211	25333595	25330211	ID=MS.gene006787
chr4.1	mRNA	25330211	25333595	25330211	ID=MS.gene006787.t1;Parent=MS.gene006787
chr4.1	exon	25333133	25333595	25333133	ID=MS.gene006787.t1.exon1;Parent=MS.gene006787.t1
chr4.1	CDS	25333133	25333595	25333133	ID=cds.MS.gene006787.t1;Parent=MS.gene006787.t1
chr4.1	exon	25332299	25332820	25332299	ID=MS.gene006787.t1.exon2;Parent=MS.gene006787.t1
chr4.1	CDS	25332299	25332820	25332299	ID=cds.MS.gene006787.t1;Parent=MS.gene006787.t1
chr4.1	exon	25332022	25332252	25332022	ID=MS.gene006787.t1.exon3;Parent=MS.gene006787.t1
chr4.1	CDS	25332022	25332252	25332022	ID=cds.MS.gene006787.t1;Parent=MS.gene006787.t1
chr4.1	exon	25331786	25331920	25331786	ID=MS.gene006787.t1.exon4;Parent=MS.gene006787.t1
chr4.1	CDS	25331786	25331920	25331786	ID=cds.MS.gene006787.t1;Parent=MS.gene006787.t1
chr4.1	exon	25331552	25331697	25331552	ID=MS.gene006787.t1.exon5;Parent=MS.gene006787.t1
chr4.1	CDS	25331552	25331697	25331552	ID=cds.MS.gene006787.t1;Parent=MS.gene006787.t1
chr4.1	exon	25331237	25331447	25331237	ID=MS.gene006787.t1.exon6;Parent=MS.gene006787.t1
chr4.1	CDS	25331237	25331447	25331237	ID=cds.MS.gene006787.t1;Parent=MS.gene006787.t1
chr4.1	exon	25330873	25331110	25330873	ID=MS.gene006787.t1.exon7;Parent=MS.gene006787.t1
chr4.1	CDS	25330873	25331110	25330873	ID=cds.MS.gene006787.t1;Parent=MS.gene006787.t1
chr4.1	exon	25330617	25330767	25330617	ID=MS.gene006787.t1.exon8;Parent=MS.gene006787.t1
chr4.1	CDS	25330617	25330767	25330617	ID=cds.MS.gene006787.t1;Parent=MS.gene006787.t1
chr4.1	exon	25330211	25330519	25330211	ID=MS.gene006787.t1.exon9;Parent=MS.gene006787.t1
chr4.1	CDS	25330211	25330519	25330211	ID=cds.MS.gene006787.t1;Parent=MS.gene006787.t1

Gene Sequence

>MS.gene006787

ATGAGTTTCATTACTTATATTCTATTTGTTCTCTCTCTTATTGTCTCCAATTCCATAGCCAGTGATGACACATCATCCATTACTCAATCTCAATCCATCAGTGATGGAGGGACCATTGTTTCACCAAAAGGACTCTTTGAGCCTGGTTTCTTCAGTATTACAAATCCAAACAAACGCTACCTCGGAATTCGATTCAAGAATGTTCAAACTCAAAATGTTGTTTGGGTTGCAAATGGTGGCAAGCCAATCAATGACTCTTCTGCTATTTTGAAACTAAACAGTTCTGGAAGTTTGGTCCTTACTCATAACAACAACATCGTTTGGTTCACAAATTCTTCCACAAACGCACAGCAACCAGTAGCACAACTCCTGGATACTGGCAATCTTGTCATAAAAGAAGATAGTGTCAGTGAAACCTATCTGTGGCAAAGCTTTGACTATCCGTCTAATACATTGTTGTCAGGTATTGTTAAGATTGATGCAAATTCTAGACTATTCTAGTTATGCATGTAATAATTTACCTAGAGTAATGAGATGAACTGAAGAGCCTAAAAATATGTATAATAAAGTAATGTAGAAAAGTATAAAGAGACATATATTATTTTAGAACTTTTGGAGCACCAATACTTATAAATAGGCATGATGTGTTATTCACAAGTGTGTGGTAGAGTTCACTCTAAGCCACTACCAACTAGTGTATGATATCGTGTTGTGTCTGGTTCTATTTTCTGTTTGGATAAACAATTTAATTTACTTGTCCCCTTAATACCAACAGGTATGAAGTTGGGATGGGACCTTAAAAGAAATTTGAATAGGCGTCTCATAGCATGGAAGAGCGTTGATGATCCAACCCCAGGTGACTTTTCTTGGGGTGTTGTATTGAATCCGTATCCTGATATCTATATGATGAAGGAAGAAAAAAAGTACTACAGACTTGGACCATGGAACAGCTTGCGTTTTAGCGGTAGGCCAGAGATGAAGCCTAATTCTTTTTTCAGTTACAGTTTTGTCTGGAATAAAGAAGAGGTTTATTACACATGGAACATCAAAGATAGTTCTCAAATATTGAAAGTGGTACTTAACCAAACCAGTAACGATCGTCCACGCTACCTATGGTCAAAAGACGACGAATCGTGGAGCGTTTATTCAAGAATACCTGCAGACATTTGTGACACTTATGGTCAATGTGGTGTCAATGGATATTGTAGCAGTACTAATTCACCAATATGTAGATGTTTAAAGGGGTTCAAGCCTAAGTTTCCTGAAAAATGGAACTCAATAGATTGGTCCCAAGGATGTCAGGAATCATCCATTGAACTGCACCAATGATGGGTTTGTCTCAGTGGCAAACTTGAAAGTTCCAGATACTACATATACTTTGGTGGATGAGAGTATTGGTCTAGAACAATGTGGAGGAAAATGCTTGAATAATTGTTCCTGCATGGCTTATACAAATACAAATATAAGTGGAGCAGGAACCGGTTGTGTTATGTGGTTTGGTGATTTAATCGATATCAAACTTATTCCAGGTGGTGGGCAATTTCTGTATATCAGGATGCCTGCTTCAGAATTAGGTGAATACTTCAATAATTCCACCAATTTTTTCCTTTTAATATTCTTTGAGAATTTAAGTCTTGTAATTGAAAGTGGAATTTAACTAAGTTGCTTTGTTTAGATAAAGGCAACAATAGTATTGACGATGAGCACAGGAGGAACACGAGAAAAATAGTTGTAATTACAGTTTCTGTAGCTTTGGGAATGCTTTTACTTGCTATTTATTTTTTCTACAGACTCAGGAGGAGCATTGTTGGTAAAACTATTCTTCCATTCTCCGACATTTGAATGAAAAAATGTCATTGGCTACATAGTTCAGTTTTTTTTTTCTTTCCATTTTCTAGGGAAGTCAAAGACAGAAGGCAACTATGAGAGACACATGGACGATATGGATCTCCCATTGCTTGATTTGTCAACAATTATTACCGCTACTGACAATTTCTCAGAGAAGAACAAAATTGGAGAAGGTGGTTTTGGACCTGTATATTTGGTAATCCAATATTGGAGTATGATTTCTAAGTAAGAATAGCGAGATAAATATGCTATAAGAAACATCTAACCATTACTATATGAATGAAATTAATGATTATCCAGGGAAAGTTTGAGAGTGGGTTAGAAATTGCTGTAAAAAGACTTTCACTGAGCTCAGCACAAGGGACGAGAGAGTTCATAAATGAAGTAAAACTTATAGCAAACGTTCAGCACCGAAATCTTGTAAAGCTTATTGGCTGTTGCATTCAGAGAGAAGAAAGAGTGCCAGTTTATGAATACATGACTAATGGTAGCCTAGATTACTTCATTTTTGGTATGTAAGTCTCACTAAGTCTTATATTAAAACTCACCAGTGTTTTATGATATAGTGATAAGTGAAAGCTTGTAGCTAACTTTGAATATTCAATGTTTAATAATAGCTTTGTTATGAATTATGCAGATCGTACCAAAAGTAAATTGCTAGATTGGCCAAAACGTTTCCACATAATCTGTGGAATTGCTAGAGGGCTATTGTATCTTCATCAAGATTCTCGATTGAGGATTGTCCATAGAGATCTCAAAAGCAGCAATGTTTTACTAGATGATACTTTGAATCCAAAAATATCAGATTTTGGATTGGCTAGAACTTTTGGAGGAAACCAAATTGAAGGAAACACAAATAGAATTGTTGGGACATAGTGAGTGTTTAACTATCCAGAACCATAGTCTATTTTAATTTTACACATATATATGATATATGACATGTGTATTTTTGTTTATTTTCTTACAATGGCTTATTGCAGTGGGTACATGGCACCAGAGTATGCTATTGATGGACAATTTTCCGTGAAATCCGACGTTTTCAGCTTTGTTATTTTACTGTTAGAGATTATATGTGGGAAGAAAAATCGAGTGTGTCATCGTACAAAGCAAACTCTTAACCTTGTTGCTTACGTAAGCACTAGGATAAATGTTAATTTGTCATGTTAAAAGCAATACCATGCTAACTTTATCTTCTTTGTAGTAACAATTTTCTACTTTTATGATTTAGGCATGGACATTCTGGAAGCATGGAAGAGCTTTACAGATAATTGACTCAAACATAGTGGATTCATGCATTGTATCTGAAGTATCGCGTTGCATCCACATTGGACTCTTATGTGTGCAACAGTATCCAGAGGATAGGCCTACCATGGCTGATGTGATTCTAATGTTAGGGAGTGAGATGATGATATTAGATGAGCCTAAAGAGCCAGGTTTTACTACGAGGAAAGAATCTGCTGAAGCAAATTCAAGCTCAAGTGGGAAGGATACAAGTTCAAATTACGAAATGACAATGAGCTCTTTTAGTGCTCGGTGA

Protein sequence

>MS.gene006787.t1

MSFITYILFVLSLIVSNSIASDDTSSITQSQSISDGGTIVSPKGLFEPGFFSITNPNKRYLGIRFKNVQTQNVVWVANGGKPINDSSAILKLNSSGSLVLTHNNNIVWFTNSSTNAQQPVAQLLDTGNLVIKEDSVSETYLWQSFDYPSNTLLSGMKLGWDLKRNLNRRLIAWKSVDDPTPGDFSWGVVLNPYPDIYMMKEEKKYYRLGPWNSLRFSGRPEMKPNSFFSYSFVWNKEEVYYTWNIKDSSQILKVVLNQTSNDRPRYLWSKDDESWSVYSRIPADICDTYGQCGVNGYCSSTNSPICRCLKGFKPKFPEKWNSIDWSQGLANLKVPDTTYTLVDESIGLEQCGGKCLNNCSCMAYTNTNISGAGTGCVMWFGDLIDIKLIPGGGQFLYIRMPASELDKGNNSIDDEHRRNTRKIVVITVSVALGMLLLAIYFFYRLRRSIVGKSKTEGNYERHMDDMDLPLLDLSTIITATDNFSEKNKIGEGGFGPVYLGKFESGLEIAVKRLSLSSAQGTREFINEVKLIANVQHRNLVKLIGCCIQREERVPVYEYMTNGSLDYFIFDRTKSKLLDWPKRFHIICGIARGLLYLHQDSRLRIVHRDLKSSNVLLDDTLNPKISDFGLARTFGGNQIEGNTNRIVGTYGYMAPEYAIDGQFSVKSDVFSFVILLLEIICGKKNRVCHRTKQTLNLVAYAWTFWKHGRALQIIDSNIVDSCIVSEVSRCIHIGLLCVQQYPEDRPTMADVILMLGSEMMILDEPKEPGFTTRKESAEANSSSSGKDTSSNYEMTMSSFSAR