AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006790.t1 MTR_4g081710 97.059 340 9 1 1 340 1 339 0.0 676
MS.gene006790.t1 MTR_5g041350 61.932 352 116 6 4 340 2 350 3.55e-129 373
MS.gene006790.t1 MTR_5g041350 54.406 261 102 5 94 340 4 261 2.37e-69 218
MS.gene006790.t1 MTR_2g086450 49.791 239 99 5 10 238 38 265 5.75e-67 216
MS.gene006790.t1 MTR_6g032990 40.217 368 173 9 10 338 35 394 1.53e-62 204
MS.gene006790.t1 MTR_5g041350 53.306 242 96 5 113 340 1 239 1.15e-59 192
MS.gene006790.t1 MTR_6g444980 51.351 185 67 5 10 184 28 199 1.64e-51 175
MS.gene006790.t1 MTR_5g027440 46.809 188 88 4 7 190 15 194 3.08e-48 164
MS.gene006790.t1 MTR_6g444980 55.102 147 48 3 10 151 28 161 2.24e-45 158
MS.gene006790.t1 MTR_7g088070 50.920 163 70 3 16 178 49 201 5.46e-45 155
MS.gene006790.t1 MTR_7g088070 50.307 163 67 4 16 178 49 197 1.57e-43 151
MS.gene006790.t1 MTR_2g027860 48.148 162 60 4 17 171 49 193 1.19e-42 150
MS.gene006790.t1 MTR_2g027800 40.833 240 114 8 10 233 32 259 3.43e-41 146
MS.gene006790.t1 MTR_2g027800 40.084 237 106 7 10 233 32 245 8.36e-40 142
MS.gene006790.t1 MTR_1g090670 40.870 230 105 8 10 232 37 242 4.45e-39 140
MS.gene006790.t1 MTR_7g098250 42.424 165 78 4 13 175 258 407 2.25e-36 137
MS.gene006790.t1 MTR_7g115530 35.593 236 114 6 17 248 218 419 6.86e-35 132
MS.gene006790.t1 MTR_1g080330 43.210 162 72 4 13 168 171 318 7.52e-35 131
MS.gene006790.t1 MTR_1g053835 41.611 149 72 3 13 160 254 388 1.39e-32 125
MS.gene006790.t1 MTR_7g093030 38.095 147 75 3 16 160 211 343 6.35e-29 115
MS.gene006790.t1 MTR_7g115530 45.528 123 50 3 17 136 218 326 6.65e-27 108
MS.gene006790.t1 MTR_1g080330 43.651 126 54 3 13 135 171 282 2.17e-26 106
MS.gene006790.t1 MTR_7g068600 39.041 146 71 4 13 153 9 141 4.87e-25 101
MS.gene006790.t1 MTR_1g053800 37.762 143 77 3 12 154 172 302 9.04e-22 94.4
MS.gene006790.t1 MTR_7g115530 53.333 75 33 1 17 89 218 292 5.92e-21 91.7
MS.gene006790.t1 MTR_7g115530 47.436 78 36 1 17 89 218 295 2.69e-20 90.9
MS.gene006790.t1 MTR_7g093030 55.172 58 26 0 16 73 211 268 1.02e-18 85.5
MS.gene006790.t1 MTR_7g115530 61.538 52 20 0 17 68 218 269 3.13e-18 83.6
MS.gene006790.t1 MTR_7g115530 58.491 53 22 0 17 69 218 270 1.93e-17 81.6
MS.gene006790.t1 MTR_1g053830 47.541 61 32 0 13 73 14 74 4.31e-17 76.3
MS.gene006790.t1 MTR_1g090670 36.649 191 90 9 49 232 1 167 8.70e-17 78.6
MS.gene006790.t1 MTR_6g071625 40.860 93 49 2 18 104 203 295 1.03e-15 77.8
MS.gene006790.t1 MTR_7g069660 56.604 53 23 0 18 70 72 124 2.59e-15 76.3
MS.gene006790.t1 MTR_8g066310 36.937 111 68 2 18 128 174 282 4.97e-15 75.5
MS.gene006790.t1 MTR_3g450310 49.180 61 31 0 17 77 19 79 8.36e-15 72.8
MS.gene006790.t1 MTR_1g112370 60.377 53 21 0 18 70 23 75 8.74e-15 74.7
MS.gene006790.t1 MTR_0223s0040 45.679 81 41 1 18 95 19 99 9.07e-15 73.9
MS.gene006790.t1 MTR_2g023580 50.000 60 30 0 18 77 56 115 1.08e-14 73.2
MS.gene006790.t1 MTR_4g121020 55.932 59 25 1 13 71 211 268 2.38e-14 74.3
MS.gene006790.t1 MTR_4g121020 55.932 59 25 1 13 71 107 164 2.46e-14 74.3
MS.gene006790.t1 MTR_4g121020 55.932 59 25 1 13 71 211 268 2.55e-14 74.3
MS.gene006790.t1 MTR_2g034960 52.857 70 26 2 13 76 207 275 3.07e-14 73.9
MS.gene006790.t1 MTR_5g029470 44.048 84 46 1 18 101 220 302 3.78e-14 73.2
MS.gene006790.t1 MTR_4g021790 54.545 55 24 1 17 71 168 221 4.96e-14 71.6
MS.gene006790.t1 MTR_3g064840 47.826 69 36 0 18 86 275 343 5.52e-14 72.8
MS.gene006790.t1 MTR_1g021520 52.632 57 27 0 18 74 127 183 8.96e-14 71.2
MS.gene006790.t1 MTR_8g086410 51.786 56 27 0 18 73 112 167 1.02e-13 72.0
MS.gene006790.t1 MTR_8g086410 51.786 56 27 0 18 73 110 165 1.10e-13 72.0
MS.gene006790.t1 MTR_5g017980 42.697 89 50 1 17 105 193 280 1.38e-13 70.9
MS.gene006790.t1 MTR_1g032570 52.542 59 27 1 13 71 127 184 1.41e-13 72.0
MS.gene006790.t1 MTR_1g032570 52.542 59 27 1 13 71 196 253 1.59e-13 72.0
MS.gene006790.t1 MTR_2g016220 54.717 53 24 0 18 70 90 142 1.69e-13 71.2
MS.gene006790.t1 MTR_2g084230 50.794 63 28 1 18 77 98 160 1.74e-13 71.2
MS.gene006790.t1 MTR_2g084230 50.794 63 28 1 18 77 98 160 1.79e-13 70.5
MS.gene006790.t1 MTR_2g016220 54.717 53 24 0 18 70 90 142 1.86e-13 70.9
MS.gene006790.t1 MTR_1g093080 58.182 55 23 0 17 71 211 265 9.28e-13 68.9
MS.gene006790.t1 MTR_4g131600 49.153 59 29 1 13 71 197 254 1.16e-12 69.3
MS.gene006790.t1 MTR_7g093010 32.593 135 81 2 17 151 213 337 1.30e-12 68.6
MS.gene006790.t1 MTR_8g086410 43.077 65 33 1 18 78 112 176 1.63e-12 68.6
MS.gene006790.t1 MTR_4g021855 52.727 55 25 1 17 71 168 221 2.24e-12 67.0
MS.gene006790.t1 MTR_2g016220 45.161 62 33 1 18 78 90 151 3.99e-12 67.0
MS.gene006790.t1 MTR_2g450070 49.153 59 29 1 13 71 209 266 5.28e-12 67.4
MS.gene006790.t1 MTR_2g450070 49.153 59 29 1 13 71 209 266 5.51e-12 67.4
MS.gene006790.t1 MTR_4g021760 51.852 54 25 1 17 70 169 221 7.51e-12 65.9
MS.gene006790.t1 MTR_7g089010 52.727 55 25 1 17 71 91 144 1.15e-11 65.1
MS.gene006790.t1 MTR_4g064730 43.421 76 36 2 14 83 128 202 1.29e-11 65.1
MS.gene006790.t1 MTR_4g086835 44.000 75 41 1 14 88 271 344 1.31e-11 65.5
MS.gene006790.t1 MTR_1g013170 43.056 72 38 2 17 88 191 259 1.98e-11 65.1
MS.gene006790.t1 MTR_4g113140 50.000 58 29 0 14 71 232 289 8.77e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006790.t1 AT1G69580 50.000 308 118 10 1 297 18 300 9.03e-81 249
MS.gene006790.t1 AT1G69580 49.191 309 120 10 1 297 18 301 4.63e-79 245
MS.gene006790.t1 AT3G04030 51.709 234 96 5 10 235 38 262 5.28e-66 213
MS.gene006790.t1 AT5G18240 49.569 232 104 5 10 235 38 262 6.81e-63 205
MS.gene006790.t1 AT5G18240 49.569 232 104 5 10 235 38 262 6.81e-63 205
MS.gene006790.t1 AT3G04030 50.855 234 97 6 10 235 38 261 6.98e-63 205
MS.gene006790.t1 AT5G18240 48.707 232 104 6 10 235 38 260 1.58e-59 197
MS.gene006790.t1 AT3G04030 49.573 234 95 6 10 235 38 256 2.89e-59 196
MS.gene006790.t1 AT3G24120 45.852 229 111 4 10 229 34 258 4.56e-59 192
MS.gene006790.t1 AT4G13640 48.485 231 100 7 10 230 30 251 1.04e-57 189
MS.gene006790.t1 AT3G24120 45.259 232 111 5 10 229 34 261 8.13e-57 186
MS.gene006790.t1 AT5G18240 47.414 232 103 6 10 235 38 256 2.95e-56 188
MS.gene006790.t1 AT5G18240 47.414 232 103 6 10 235 38 256 2.95e-56 188
MS.gene006790.t1 AT4G13640 47.863 234 100 8 10 230 30 254 1.14e-55 183
MS.gene006790.t1 AT1G79430 53.247 154 64 1 10 163 27 172 1.42e-49 169
MS.gene006790.t1 AT5G45580 49.367 158 73 3 11 161 1 158 4.13e-45 155
MS.gene006790.t1 AT5G45580 49.057 159 74 3 10 161 16 174 4.41e-45 155
MS.gene006790.t1 AT2G01060 46.584 161 70 2 16 173 14 161 1.86e-43 151
MS.gene006790.t1 AT3G12730 50.000 152 71 3 10 160 16 163 1.77e-42 147
MS.gene006790.t1 AT3G04030 47.179 195 86 5 49 235 1 186 1.84e-40 144
MS.gene006790.t1 AT3G04450 40.588 170 79 3 13 175 194 348 1.63e-34 130
MS.gene006790.t1 AT3G04450 40.588 170 79 3 13 175 194 348 1.63e-34 130
MS.gene006790.t1 AT4G28610 43.038 158 72 3 16 169 224 367 1.72e-34 130
MS.gene006790.t1 AT5G29000 43.210 162 72 3 16 171 187 334 2.44e-34 129
MS.gene006790.t1 AT5G29000 43.210 162 72 3 16 171 187 334 2.44e-34 129
MS.gene006790.t1 AT3G04450 40.588 170 79 3 13 175 234 388 3.18e-34 130
MS.gene006790.t1 AT5G29000 43.210 162 72 3 16 171 230 377 5.08e-34 129
MS.gene006790.t1 AT3G04030 44.615 195 85 6 49 235 1 180 6.83e-34 127
MS.gene006790.t1 AT5G06800 42.466 146 71 3 17 159 192 327 6.70e-32 123
MS.gene006790.t1 AT5G18240 42.487 193 92 6 49 235 1 180 1.36e-31 121
MS.gene006790.t1 AT3G13040 37.037 189 105 3 13 197 237 415 6.95e-31 121
MS.gene006790.t1 AT3G13040 37.037 189 105 3 13 197 237 415 6.95e-31 121
MS.gene006790.t1 AT3G13040 37.037 189 105 3 13 197 237 415 6.95e-31 121
MS.gene006790.t1 AT5G06800 41.259 143 72 3 17 159 192 322 7.28e-31 120
MS.gene006790.t1 AT2G20400 40.541 148 72 2 19 163 233 367 7.34e-30 118
MS.gene006790.t1 AT2G20400 41.216 148 70 3 19 163 233 366 3.19e-29 116
MS.gene006790.t1 AT1G79430 48.387 124 38 3 49 163 1 107 2.18e-26 106
MS.gene006790.t1 AT2G01060 41.600 125 57 2 52 173 1 112 2.98e-22 94.0
MS.gene006790.t1 AT3G04450 57.377 61 26 0 13 73 234 294 6.11e-20 89.4
MS.gene006790.t1 AT5G29000 56.897 58 25 0 16 73 230 287 2.55e-19 87.4
MS.gene006790.t1 AT3G12730 43.363 113 59 3 49 160 1 109 8.97e-19 83.2
MS.gene006790.t1 AT5G06800 54.386 57 26 0 17 73 192 248 9.44e-18 82.4
MS.gene006790.t1 AT2G06020 50.000 64 32 0 10 73 79 142 5.60e-17 80.5
MS.gene006790.t1 AT4G17695 49.275 69 35 0 18 86 165 233 3.57e-15 75.9
MS.gene006790.t1 AT1G32240 47.222 72 38 0 18 89 214 285 4.89e-15 75.9
MS.gene006790.t1 AT1G32240 47.222 72 38 0 18 89 214 285 4.93e-15 75.9
MS.gene006790.t1 AT1G14600 56.604 53 23 0 18 70 24 76 6.32e-15 73.9
MS.gene006790.t1 AT4G04605 52.830 53 25 0 18 70 15 67 1.51e-14 72.4
MS.gene006790.t1 AT2G38300 56.604 53 23 0 18 70 55 107 3.50e-14 72.8
MS.gene006790.t1 AT5G42630 49.231 65 27 1 18 82 106 164 3.84e-14 71.2
MS.gene006790.t1 AT5G16560 54.386 57 26 0 18 74 220 276 4.08e-14 73.2
MS.gene006790.t1 AT3G16857 56.364 55 23 1 17 71 167 220 7.13e-14 72.8
MS.gene006790.t1 AT2G02060 49.180 61 31 0 18 78 30 90 7.27e-14 70.9
MS.gene006790.t1 AT2G02060 49.180 61 31 0 18 78 30 90 7.27e-14 70.9
MS.gene006790.t1 AT5G42630 49.231 65 27 1 18 82 106 164 7.49e-14 71.2
MS.gene006790.t1 AT3G16857 56.364 55 23 1 17 71 237 290 8.40e-14 72.8
MS.gene006790.t1 AT3G16857 56.364 55 23 1 17 71 237 290 8.66e-14 72.8
MS.gene006790.t1 AT4G04580 52.830 53 25 0 18 70 15 67 1.10e-13 68.6
MS.gene006790.t1 AT2G42660 50.943 53 26 0 18 70 51 103 2.25e-13 69.7
MS.gene006790.t1 AT5G45580 40.385 104 55 3 65 161 16 119 2.70e-13 68.9
MS.gene006790.t1 AT2G40260 49.153 59 30 0 18 76 83 141 3.98e-13 70.1
MS.gene006790.t1 AT3G25790 47.619 63 33 0 22 84 201 263 1.81e-12 68.2
MS.gene006790.t1 AT5G59570 50.000 58 28 1 14 71 138 194 1.83e-12 67.4
MS.gene006790.t1 AT5G59570 50.000 58 28 1 14 71 138 194 1.83e-12 67.4
MS.gene006790.t1 AT5G05090 52.727 55 25 1 17 71 81 134 3.30e-12 66.2
MS.gene006790.t1 AT3G10760 52.727 55 25 1 17 71 105 158 4.06e-12 66.6
MS.gene006790.t1 AT2G40970 51.724 58 27 1 14 71 102 158 6.10e-12 65.5
MS.gene006790.t1 AT5G58080 53.448 58 26 1 14 71 191 247 6.25e-12 67.0
MS.gene006790.t1 AT3G46640 50.909 55 26 1 17 71 144 197 1.04e-11 65.5
MS.gene006790.t1 AT3G46640 50.909 55 26 1 17 71 144 197 1.06e-11 65.5
MS.gene006790.t1 AT3G46640 50.909 55 26 1 17 71 144 197 1.06e-11 65.5
MS.gene006790.t1 AT4G37180 50.943 53 26 0 19 71 212 264 1.13e-11 65.5
MS.gene006790.t1 AT2G25180 38.298 94 51 2 17 104 195 287 1.13e-11 66.2
MS.gene006790.t1 AT4G37180 50.943 53 26 0 19 71 219 271 1.19e-11 65.5
MS.gene006790.t1 AT2G01760 49.091 55 27 1 17 71 135 188 1.62e-11 64.7
MS.gene006790.t1 AT2G01760 49.091 55 27 1 17 71 200 253 2.16e-11 64.7
MS.gene006790.t1 AT1G67710 49.057 53 27 0 19 71 121 173 2.73e-11 64.7
MS.gene006790.t1 AT2G01760 49.091 55 27 1 17 71 228 281 3.12e-11 64.3
MS.gene006790.t1 AT1G67710 49.057 53 27 0 19 71 130 182 3.61e-11 64.3
MS.gene006790.t1 AT1G67710 49.057 53 27 0 19 71 195 247 3.81e-11 64.3
MS.gene006790.t1 AT1G68670 50.725 69 29 1 3 71 206 269 4.10e-11 63.9
MS.gene006790.t1 AT1G25550 51.724 58 28 0 14 71 206 263 4.22e-11 63.9
MS.gene006790.t1 AT1G49190 51.724 58 25 1 17 71 215 272 9.27e-11 63.2
MS.gene006790.t1 AT3G62670 38.750 80 44 2 13 88 207 285 9.70e-11 63.2

Find 56 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGAAATACTATTATAATT+TGG 0.196696 4.1:-25306494 None:intergenic
CTTCTGGCTCAATGGCCATT+AGG 0.226035 4.1:-25306526 None:intergenic
TTCTGGCTCAATGGCCATTA+GGG 0.263854 4.1:-25306525 None:intergenic
ATTACTCAGTGGTTTGGTTC+TGG 0.295890 4.1:-25305883 None:intergenic
GTTTCTGTTAGTTCTGAAAT+TGG 0.299096 4.1:-25306335 None:intergenic
AGTGTTCTCAGCCTCATTTA+TGG 0.303454 4.1:-25306471 None:intergenic
CCATCTTAAAAGTCATTTAC+AGG 0.331529 4.1:+25305591 MS.gene006790:CDS
AGCCAGAAGGAAGGTCATTC+AGG 0.335489 4.1:+25306540 MS.gene006790:CDS
TAATTGCATCAGTGAATCTT+TGG 0.343412 4.1:-25305396 None:intergenic
GTCCTGAATGACCTTCCTTC+TGG 0.358063 4.1:-25306542 None:intergenic
TTCAGTTGAATTGCCCCTAA+TGG 0.373934 4.1:+25306511 MS.gene006790:CDS
ACCTTGTTTGTTGTCAGAAC+AGG 0.382827 4.1:-25305723 None:intergenic
ATCACCCTCATCAAACTCTT+TGG 0.386936 4.1:-25305544 None:intergenic
ATGCTAAGCCTAGGCTGAAA+TGG 0.395318 4.1:+25305359 MS.gene006790:CDS
TTAACTATTACTCAGTGGTT+TGG 0.396613 4.1:-25305889 None:intergenic
ATGAGGGTGATGGGAATTCC+AGG 0.406362 4.1:+25305556 MS.gene006790:CDS
AAAGAACCAAACGCATGCTT+TGG 0.416759 4.1:-25305330 None:intergenic
AAGGCGCAGGAAGCACTTGC+AGG 0.427854 4.1:+25306215 MS.gene006790:CDS
TCTTCTTCTTCTTCGACAAC+GGG 0.438944 4.1:+25306245 MS.gene006790:CDS
GCAAAACCAAAGCATGCGTT+TGG 0.448457 4.1:+25305324 MS.gene006790:CDS
TGACCTTCCTTCTGGCTCAA+TGG 0.470884 4.1:-25306534 None:intergenic
AGTTCTGAAATTGGAGAACT+AGG 0.474659 4.1:-25306326 None:intergenic
GAAACTTTATGAACAAATTG+AGG 0.475081 4.1:+25306038 MS.gene006790:CDS
TCATGAGTCCATTTCAGCCT+AGG 0.479144 4.1:-25305367 None:intergenic
ACTGATGCAATTAATCAGCT+TGG 0.488534 4.1:+25305406 MS.gene006790:CDS
CAGAACAGGTTTCTACCTGT+TGG 0.489939 4.1:-25305709 None:intergenic
TAGACTTGGCAAAAGCCAAC+AGG 0.499299 4.1:+25305694 MS.gene006790:CDS
AATGCAAATGATGGAGGAAG+TGG 0.507541 4.1:+25306566 MS.gene006790:CDS
TGAGGCTCTTGAAGTACAAA+TGG 0.509949 4.1:+25306005 MS.gene006790:CDS
TTCAGGACTAATGCAAATGA+TGG 0.510398 4.1:+25306557 MS.gene006790:CDS
AGATGGTACAAAGTGAGTCC+TGG 0.514393 4.1:-25305574 None:intergenic
CTTACAATCGGTACTAATGA+AGG 0.524871 4.1:+25306196 MS.gene006790:CDS
AAGAGTTTGATGAGGGTGAT+GGG 0.525589 4.1:+25305547 MS.gene006790:CDS
CAGCCTAGGCTTAGCATCAG+TGG 0.528866 4.1:-25305353 None:intergenic
TGCAGTAGAGAAATCAGTGT+TGG 0.530962 4.1:+25305857 MS.gene006790:CDS
TCAAGGAAAGTACTTACAAT+CGG 0.534694 4.1:+25306184 MS.gene006790:CDS
AAAGAGTTTGATGAGGGTGA+TGG 0.538821 4.1:+25305546 MS.gene006790:CDS
CAGTTTAGAATTGAAGCTCA+AGG 0.543693 4.1:+25306167 MS.gene006790:CDS
TTTCCACTGATGCTAAGCCT+AGG 0.552556 4.1:+25305350 MS.gene006790:CDS
GATGCAATTAATCAGCTTGG+AGG 0.562956 4.1:+25305409 MS.gene006790:CDS
TTAGTTTAAACTCTGGTGAG+AGG 0.563350 4.1:+25306366 MS.gene006790:CDS
GGTGAGAGGAAACAAAATAG+AGG 0.570215 4.1:+25306380 MS.gene006790:CDS
ATCGGTACTAATGAAGGCGC+AGG 0.585210 4.1:+25306202 MS.gene006790:CDS
TCAGAACTAACAGAAACAAG+AGG 0.597866 4.1:+25306341 MS.gene006790:CDS
ATAGAAATTCAAAACAGTGA+TGG 0.607108 4.1:+25305830 MS.gene006790:CDS
TCTGGCTCAATGGCCATTAG+GGG 0.623024 4.1:-25306524 None:intergenic
ACCTGTTCTGACAACAAACA+AGG 0.624931 4.1:+25305722 MS.gene006790:CDS
TTATTACAGAAATATAGACT+TGG 0.629448 4.1:+25305680 MS.gene006790:intron
AGGACTAATGCAAATGATGG+AGG 0.631823 4.1:+25306560 MS.gene006790:CDS
AGATGTGTTGATCAACCAGA+TGG 0.635020 4.1:+25306623 MS.gene006790:CDS
AACACCAAAGAGTTTGATGA+GGG 0.637512 4.1:+25305540 MS.gene006790:CDS
ATGCAAATGATGGAGGAAGT+GGG 0.639201 4.1:+25306567 MS.gene006790:CDS
CAACACCAAAGAGTTTGATG+AGG 0.646969 4.1:+25305539 MS.gene006790:CDS
TGGCCATTGAGCCAGAAGGA+AGG 0.652849 4.1:+25306531 MS.gene006790:CDS
TAGAAACTTGAAGATTGCTG+AGG 0.682070 4.1:+25305987 MS.gene006790:intron
CTAATGGCCATTGAGCCAGA+AGG 0.682174 4.1:+25306527 MS.gene006790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTGAAATACTATTATAATT+TGG - chr4.1:25306497-25306516 None:intergenic 15.0%
!! TTATTACAGAAATATAGACT+TGG + chr4.1:25305680-25305699 MS.gene006790:intron 20.0%
! ACAAATTAACTATTACTCAG+TGG - chr4.1:25305897-25305916 None:intergenic 25.0%
! ATAGAAATTCAAAACAGTGA+TGG + chr4.1:25305830-25305849 MS.gene006790:CDS 25.0%
! GAAACTTTATGAACAAATTG+AGG + chr4.1:25306038-25306057 MS.gene006790:CDS 25.0%
!! TAGATTTCAAGTGATGAATA+AGG + chr4.1:25306098-25306117 MS.gene006790:intron 25.0%
!! TTTTTCACACTATGTATATG+TGG + chr4.1:25305510-25305529 MS.gene006790:intron 25.0%
!!! AATCTTGAGTTATTGATTCA+TGG + chr4.1:25305797-25305816 MS.gene006790:intron 25.0%
!!! TTTGAGCTTATTTGATTTTC+TGG + chr4.1:25305657-25305676 MS.gene006790:intron 25.0%
AAATATGTGGCAAAAAACTG+AGG + chr4.1:25306648-25306667 MS.gene006790:CDS 30.0%
CCATCTTAAAAGTCATTTAC+AGG + chr4.1:25305591-25305610 MS.gene006790:CDS 30.0%
CGAAAAACAAACCATAAATG+AGG + chr4.1:25306460-25306479 MS.gene006790:CDS 30.0%
TAATTGCATCAGTGAATCTT+TGG - chr4.1:25305399-25305418 None:intergenic 30.0%
TATGACAGTAATAGAATGAC+TGG + chr4.1:25305755-25305774 MS.gene006790:intron 30.0%
TCATCACTTGAAATCTAGAT+AGG - chr4.1:25306095-25306114 None:intergenic 30.0%
TTAACTATTACTCAGTGGTT+TGG - chr4.1:25305892-25305911 None:intergenic 30.0%
! GCTCAAACTCTTATAGTTTT+TGG - chr4.1:25305644-25305663 None:intergenic 30.0%
! TCAGTTTGAAACATGATTTC+AGG + chr4.1:25306130-25306149 MS.gene006790:intron 30.0%
!! CCTGTAAATGACTTTTAAGA+TGG - chr4.1:25305594-25305613 None:intergenic 30.0%
!! GTTTCTGTTAGTTCTGAAAT+TGG - chr4.1:25306338-25306357 None:intergenic 30.0%
!! TCAAGGAAAGTACTTACAAT+CGG + chr4.1:25306184-25306203 MS.gene006790:CDS 30.0%
!! TTGTTTTTCGTCTTTTCTCT+CGG - chr4.1:25306450-25306469 None:intergenic 30.0%
!!! AGAGGTTTTAGTTTAAACTC+TGG + chr4.1:25306359-25306378 MS.gene006790:CDS 30.0%
!!! AGTGCAACTATTGATTTTGA+TGG + chr4.1:25306599-25306618 MS.gene006790:CDS 30.0%
AACACCAAAGAGTTTGATGA+GGG + chr4.1:25305540-25305559 MS.gene006790:CDS 35.0%
ACTGATGCAATTAATCAGCT+TGG + chr4.1:25305406-25305425 MS.gene006790:CDS 35.0%
CAACCAGATGGAAAAATATG+TGG + chr4.1:25306635-25306654 MS.gene006790:CDS 35.0%
CTTACAATCGGTACTAATGA+AGG + chr4.1:25306196-25306215 MS.gene006790:CDS 35.0%
TAGAAACTTGAAGATTGCTG+AGG + chr4.1:25305987-25306006 MS.gene006790:intron 35.0%
TCAGAACTAACAGAAACAAG+AGG + chr4.1:25306341-25306360 MS.gene006790:CDS 35.0%
TGGCAAAAAACTGAGGAAAT+CGG + chr4.1:25306655-25306674 MS.gene006790:CDS 35.0%
TTAGTTTAAACTCTGGTGAG+AGG + chr4.1:25306366-25306385 MS.gene006790:CDS 35.0%
TTCAGGACTAATGCAAATGA+TGG + chr4.1:25306557-25306576 MS.gene006790:CDS 35.0%
TTCTTCTTCTTCTTCGACAA+CGG + chr4.1:25306244-25306263 MS.gene006790:CDS 35.0%
! CAGTTTAGAATTGAAGCTCA+AGG + chr4.1:25306167-25306186 MS.gene006790:CDS 35.0%
! TGACTGGTAGTTTTCTGATT+TGG + chr4.1:25305771-25305790 MS.gene006790:intron 35.0%
! TTGCCACATATTTTTCCATC+TGG - chr4.1:25306641-25306660 None:intergenic 35.0%
!! AGTTCTGAAATTGGAGAACT+AGG - chr4.1:25306329-25306348 None:intergenic 35.0%
AAAGAACCAAACGCATGCTT+TGG - chr4.1:25305333-25305352 None:intergenic 40.0%
AAAGAGTTTGATGAGGGTGA+TGG + chr4.1:25305546-25305565 MS.gene006790:CDS 40.0%
AAGAGTTTGATGAGGGTGAT+GGG + chr4.1:25305547-25305566 MS.gene006790:CDS 40.0%
ACACTATGTATATGTGGCAG+AGG + chr4.1:25305516-25305535 MS.gene006790:intron 40.0%
ACCTGTTCTGACAACAAACA+AGG + chr4.1:25305722-25305741 MS.gene006790:CDS 40.0%
AGGACTAATGCAAATGATGG+AGG + chr4.1:25306560-25306579 MS.gene006790:CDS 40.0%
AGTGTTCTCAGCCTCATTTA+TGG - chr4.1:25306474-25306493 None:intergenic 40.0%
ATCACCCTCATCAAACTCTT+TGG - chr4.1:25305547-25305566 None:intergenic 40.0%
CAACACCAAAGAGTTTGATG+AGG + chr4.1:25305539-25305558 MS.gene006790:CDS 40.0%
GATGCAATTAATCAGCTTGG+AGG + chr4.1:25305409-25305428 MS.gene006790:CDS 40.0%
GGTGAGAGGAAACAAAATAG+AGG + chr4.1:25306380-25306399 MS.gene006790:CDS 40.0%
TCTTCTTCTTCTTCGACAAC+GGG + chr4.1:25306245-25306264 MS.gene006790:CDS 40.0%
TGAGGCTCTTGAAGTACAAA+TGG + chr4.1:25306005-25306024 MS.gene006790:CDS 40.0%
TGCAGTAGAGAAATCAGTGT+TGG + chr4.1:25305857-25305876 MS.gene006790:CDS 40.0%
TTCAGTTGAATTGCCCCTAA+TGG + chr4.1:25306511-25306530 MS.gene006790:CDS 40.0%
! AATGCAAATGATGGAGGAAG+TGG + chr4.1:25306566-25306585 MS.gene006790:CDS 40.0%
! AGATGTGTTGATCAACCAGA+TGG + chr4.1:25306623-25306642 MS.gene006790:CDS 40.0%
! ATGCAAATGATGGAGGAAGT+GGG + chr4.1:25306567-25306586 MS.gene006790:CDS 40.0%
!! ACCTTGTTTGTTGTCAGAAC+AGG - chr4.1:25305726-25305745 None:intergenic 40.0%
!! ATTACTCAGTGGTTTGGTTC+TGG - chr4.1:25305886-25305905 None:intergenic 40.0%
AGATGGTACAAAGTGAGTCC+TGG - chr4.1:25305577-25305596 None:intergenic 45.0%
ATGCTAAGCCTAGGCTGAAA+TGG + chr4.1:25305359-25305378 MS.gene006790:CDS 45.0%
CAGAACAGGTTTCTACCTGT+TGG - chr4.1:25305712-25305731 None:intergenic 45.0%
GCAAAACCAAAGCATGCGTT+TGG + chr4.1:25305324-25305343 MS.gene006790:CDS 45.0%
TAGACTTGGCAAAAGCCAAC+AGG + chr4.1:25305694-25305713 MS.gene006790:CDS 45.0%
TCATGAGTCCATTTCAGCCT+AGG - chr4.1:25305370-25305389 None:intergenic 45.0%
TTTCCACTGATGCTAAGCCT+AGG + chr4.1:25305350-25305369 MS.gene006790:CDS 45.0%
!! TTCTGGCTCAATGGCCATTA+GGG - chr4.1:25306528-25306547 None:intergenic 45.0%
AGCCAGAAGGAAGGTCATTC+AGG + chr4.1:25306540-25306559 MS.gene006790:CDS 50.0%
CTAATGGCCATTGAGCCAGA+AGG + chr4.1:25306527-25306546 MS.gene006790:CDS 50.0%
GTCCTGAATGACCTTCCTTC+TGG - chr4.1:25306545-25306564 None:intergenic 50.0%
! ATCGGTACTAATGAAGGCGC+AGG + chr4.1:25306202-25306221 MS.gene006790:CDS 50.0%
! TCTGGCTCAATGGCCATTAG+GGG - chr4.1:25306527-25306546 None:intergenic 50.0%
!! ATGAGGGTGATGGGAATTCC+AGG + chr4.1:25305556-25305575 MS.gene006790:CDS 50.0%
!! CTTCTGGCTCAATGGCCATT+AGG - chr4.1:25306529-25306548 None:intergenic 50.0%
!! TGACCTTCCTTCTGGCTCAA+TGG - chr4.1:25306537-25306556 None:intergenic 50.0%
CAGCCTAGGCTTAGCATCAG+TGG - chr4.1:25305356-25305375 None:intergenic 55.0%
TGGCCATTGAGCCAGAAGGA+AGG + chr4.1:25306531-25306550 MS.gene006790:CDS 55.0%
!! AAGGCGCAGGAAGCACTTGC+AGG + chr4.1:25306215-25306234 MS.gene006790:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 25305316 25306772 25305316 ID=MS.gene006790
chr4.1 mRNA 25305316 25306772 25305316 ID=MS.gene006790.t1;Parent=MS.gene006790
chr4.1 exon 25305316 25305439 25305316 ID=MS.gene006790.t1.exon1;Parent=MS.gene006790.t1
chr4.1 CDS 25305316 25305439 25305316 ID=cds.MS.gene006790.t1;Parent=MS.gene006790.t1
chr4.1 exon 25305536 25305612 25305536 ID=MS.gene006790.t1.exon2;Parent=MS.gene006790.t1
chr4.1 CDS 25305536 25305612 25305536 ID=cds.MS.gene006790.t1;Parent=MS.gene006790.t1
chr4.1 exon 25305689 25305743 25305689 ID=MS.gene006790.t1.exon3;Parent=MS.gene006790.t1
chr4.1 CDS 25305689 25305743 25305689 ID=cds.MS.gene006790.t1;Parent=MS.gene006790.t1
chr4.1 exon 25305825 25305900 25305825 ID=MS.gene006790.t1.exon4;Parent=MS.gene006790.t1
chr4.1 CDS 25305825 25305900 25305825 ID=cds.MS.gene006790.t1;Parent=MS.gene006790.t1
chr4.1 exon 25305990 25306059 25305990 ID=MS.gene006790.t1.exon5;Parent=MS.gene006790.t1
chr4.1 CDS 25305990 25306059 25305990 ID=cds.MS.gene006790.t1;Parent=MS.gene006790.t1
chr4.1 exon 25306152 25306772 25306152 ID=MS.gene006790.t1.exon6;Parent=MS.gene006790.t1
chr4.1 CDS 25306152 25306772 25306152 ID=cds.MS.gene006790.t1;Parent=MS.gene006790.t1
Gene Sequence

>MS.gene006790

ATGGATCAGCAAAACCAAAGCATGCGTTTGGTTCTTTCCACTGATGCTAAGCCTAGGCTGAAATGGACTCATGAACTTCACCAAAGATTCACTGATGCAATTAATCAGCTTGGAGGTGCAGAAAGTAAGTGTGAGACAAAAAACTTACTATTTTTAGATCATAGTTTACATCATTATCTTAAGTACTAAATGTATTTTTCACACTATGTATATGTGGCAGAGGCAACACCAAAGAGTTTGATGAGGGTGATGGGAATTCCAGGACTCACTTTGTACCATCTTAAAAGTCATTTACAGGTATCATAATCTTTTTGCTACACTGAATCCAAAAACTATAAGAGTTTGAGCTTATTTGATTTTCTGGTTATTACAGAAATATAGACTTGGCAAAAGCCAACAGGTAGAAACCTGTTCTGACAACAAACAAGGTGAGTTACTGTATGACAGTAATAGAATGACTGGTAGTTTTCTGATTTGGCATAATCTTGAGTTATTGATTCATGGTGCAGATTACATAGAAATTCAAAACAGTGATGGTCAATGCAGTAGAGAAATCAGTGTTGGAAACCAGAACCAAACCACTGAGTAATAGTTAATTTGTTACTGAGCAAATATTTGAGCATCTTTTGTTGATGTTTGAAGTATTTATTGATCAAATGTTTTGTGTTCACTAGAAACTTGAAGATTGCTGAGGCTCTTGAAGTACAAATGGAAGTACAAAAGAAACTTTATGAACAAATTGAGGTAGCATTTACAAATTATGATCAATACTCATTCCTATCTAGATTTCAAGTGATGAATAAGGACATGTTAATCAGTTTGAAACATGATTTCAGGTGCAGAAACATTTACAGTTTAGAATTGAAGCTCAAGGAAAGTACTTACAATCGGTACTAATGAAGGCGCAGGAAGCACTTGCAGGATATAGTTCTTCTTCTTCTTCGACAACGGGTGTAGAACATGCTAAAGCTGAACTTTCTCAGTTATTATCAATAATCAACAATGCATGTCCTAGTTCTCCAATTTCAGAACTAACAGAAACAAGAGGTTTTAGTTTAAACTCTGGTGAGAGGAAACAAAATAGAGGAACTATGTGTTCTTTAGAAAGTTCTCTTACATCATCTGAAAGCTCCGAGAGAAAAGACGAAAAACAAACCATAAATGAGGCTGAGAACACTCCAAATTATAATAGTATTTCAGTTGAATTGCCCCTAATGGCCATTGAGCCAGAAGGAAGGTCATTCAGGACTAATGCAAATGATGGAGGAAGTGGGAGAAAGAGAAGTGCAACTATTGATTTTGATGGTAGATGTGTTGATCAACCAGATGGAAAAATATGTGGCAAAAAACTGAGGAAATCGGAGTTTTCACAAATGCTTGACTTGAACAGCAAGTATGAGAGAGACATTGACTCAAGTTCATTAGAAATAGATTTAAATTGCAGTTCAAGCTTTTAG
Protein sequence

>MS.gene006790.t1

MDQQNQSMRLVLSTDAKPRLKWTHELHQRFTDAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQQVETCSDNKQDYIEIQNSDGQCSREISVGNQNQTTENLKIAEALEVQMEVQKKLYEQIEVQKHLQFRIEAQGKYLQSVLMKAQEALAGYSSSSSSTTGVEHAKAELSQLLSIINNACPSSPISELTETRGFSLNSGERKQNRGTMCSLESSLTSSESSERKDEKQTINEAENTPNYNSISVELPLMAIEPEGRSFRTNANDGGSGRKRSATIDFDGRCVDQPDGKICGKKLRKSEFSQMLDLNSKYERDIDSSSLEIDLNCSSSF