Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006791.t1 | XP_003607748.1 | 83.9 | 467 | 73 | 1 | 1 | 467 | 1 | 465 | 2.10E-214 | 755 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006791.t1 | Q8LFV3 | 42.0 | 371 | 174 | 12 | 113 | 466 | 101 | 447 | 3.8e-55 | 217.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006791.t1 | G7JG96 | 83.9 | 467 | 73 | 1 | 1 | 467 | 1 | 465 | 1.5e-214 | 755.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene006791.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006791.t1 | MTR_4g082060 | 94.861 | 467 | 22 | 1 | 1 | 467 | 1 | 465 | 0.0 | 892 |
MS.gene006791.t1 | MTR_6g012450 | 44.269 | 506 | 228 | 18 | 1 | 465 | 1 | 493 | 1.53e-115 | 348 |
MS.gene006791.t1 | MTR_7g010950 | 44.600 | 500 | 226 | 16 | 1 | 465 | 1 | 484 | 2.65e-107 | 327 |
MS.gene006791.t1 | MTR_3g435480 | 43.838 | 495 | 216 | 20 | 1 | 465 | 1 | 463 | 9.97e-105 | 320 |
MS.gene006791.t1 | MTR_5g041530 | 41.237 | 485 | 151 | 17 | 6 | 465 | 4 | 379 | 1.81e-86 | 270 |
MS.gene006791.t1 | MTR_5g041380 | 38.320 | 488 | 151 | 17 | 6 | 465 | 4 | 369 | 2.63e-73 | 236 |
MS.gene006791.t1 | MTR_5g041400 | 36.605 | 489 | 152 | 18 | 6 | 466 | 4 | 362 | 8.37e-71 | 229 |
MS.gene006791.t1 | MTR_8g044220 | 33.537 | 492 | 231 | 19 | 5 | 465 | 11 | 437 | 5.30e-62 | 208 |
MS.gene006791.t1 | MTR_7g086780 | 32.992 | 488 | 236 | 17 | 1 | 465 | 1 | 420 | 1.46e-59 | 201 |
MS.gene006791.t1 | MTR_5g041420 | 49.528 | 212 | 70 | 8 | 4 | 185 | 2 | 206 | 3.37e-50 | 174 |
MS.gene006791.t1 | MTR_6g027460 | 34.056 | 323 | 142 | 11 | 4 | 306 | 9 | 280 | 1.82e-42 | 154 |
MS.gene006791.t1 | MTR_6g027450 | 46.857 | 175 | 76 | 4 | 85 | 243 | 51 | 224 | 6.79e-42 | 152 |
MS.gene006791.t1 | MTR_2g016030 | 86.667 | 60 | 8 | 0 | 116 | 175 | 41 | 100 | 1.18e-33 | 124 |
MS.gene006791.t1 | MTR_3g091820 | 61.765 | 68 | 26 | 0 | 108 | 175 | 29 | 96 | 1.30e-25 | 106 |
MS.gene006791.t1 | MTR_8g027295 | 65.625 | 64 | 22 | 0 | 117 | 180 | 19 | 82 | 3.06e-25 | 104 |
MS.gene006791.t1 | MTR_8g068210 | 52.381 | 84 | 40 | 0 | 97 | 180 | 7 | 90 | 5.75e-25 | 105 |
MS.gene006791.t1 | MTR_8g079060 | 63.934 | 61 | 22 | 0 | 122 | 182 | 29 | 89 | 1.37e-24 | 102 |
MS.gene006791.t1 | MTR_2g093220 | 64.615 | 65 | 23 | 0 | 111 | 175 | 29 | 93 | 2.84e-24 | 102 |
MS.gene006791.t1 | MTR_8g479350 | 66.102 | 59 | 20 | 0 | 122 | 180 | 68 | 126 | 3.61e-24 | 103 |
MS.gene006791.t1 | MTR_4g022370 | 67.241 | 58 | 19 | 0 | 118 | 175 | 78 | 135 | 4.12e-24 | 103 |
MS.gene006791.t1 | MTR_1g077600 | 57.971 | 69 | 29 | 0 | 106 | 174 | 27 | 95 | 9.26e-24 | 100 |
MS.gene006791.t1 | MTR_1g077600 | 57.971 | 69 | 29 | 0 | 106 | 174 | 27 | 95 | 9.93e-24 | 101 |
MS.gene006791.t1 | MTR_4g088580 | 74.074 | 54 | 14 | 0 | 124 | 177 | 57 | 110 | 1.59e-23 | 102 |
MS.gene006791.t1 | MTR_2g059540 | 73.469 | 49 | 13 | 0 | 122 | 170 | 31 | 79 | 3.76e-23 | 97.4 |
MS.gene006791.t1 | MTR_1g056810 | 53.333 | 90 | 40 | 2 | 117 | 204 | 6 | 95 | 5.86e-23 | 99.0 |
MS.gene006791.t1 | MTR_4g063780 | 58.571 | 70 | 26 | 1 | 108 | 174 | 58 | 127 | 5.92e-23 | 99.8 |
MS.gene006791.t1 | MTR_2g096740 | 68.519 | 54 | 17 | 0 | 122 | 175 | 62 | 115 | 6.85e-23 | 98.6 |
MS.gene006791.t1 | MTR_2g096740 | 68.519 | 54 | 17 | 0 | 122 | 175 | 77 | 130 | 7.16e-23 | 99.0 |
MS.gene006791.t1 | MTR_4g109980 | 67.925 | 53 | 17 | 0 | 120 | 172 | 38 | 90 | 7.39e-23 | 99.4 |
MS.gene006791.t1 | MTR_8g015840 | 62.903 | 62 | 23 | 0 | 122 | 183 | 20 | 81 | 8.44e-23 | 96.7 |
MS.gene006791.t1 | MTR_4g461080 | 56.000 | 75 | 29 | 1 | 104 | 174 | 7 | 81 | 2.68e-22 | 96.7 |
MS.gene006791.t1 | MTR_7g059400 | 71.154 | 52 | 15 | 0 | 124 | 175 | 78 | 129 | 3.46e-22 | 97.8 |
MS.gene006791.t1 | MTR_4g089095 | 70.370 | 54 | 15 | 1 | 124 | 177 | 52 | 104 | 7.59e-22 | 95.9 |
MS.gene006791.t1 | MTR_7g024670 | 72.549 | 51 | 14 | 0 | 124 | 174 | 79 | 129 | 8.88e-22 | 97.1 |
MS.gene006791.t1 | MTR_2g013370 | 67.857 | 56 | 17 | 1 | 122 | 177 | 46 | 100 | 9.79e-22 | 95.1 |
MS.gene006791.t1 | MTR_4g089095 | 70.370 | 54 | 15 | 1 | 124 | 177 | 18 | 70 | 1.02e-21 | 94.7 |
MS.gene006791.t1 | MTR_3g090430 | 59.155 | 71 | 27 | 2 | 107 | 175 | 34 | 104 | 1.03e-21 | 96.3 |
MS.gene006791.t1 | MTR_5g031440 | 63.636 | 55 | 20 | 0 | 118 | 172 | 39 | 93 | 1.96e-21 | 95.5 |
MS.gene006791.t1 | MTR_2g014170 | 71.429 | 49 | 14 | 0 | 122 | 170 | 45 | 93 | 1.97e-21 | 95.1 |
MS.gene006791.t1 | MTR_3g077750 | 61.290 | 62 | 23 | 1 | 112 | 172 | 50 | 111 | 3.64e-21 | 94.7 |
MS.gene006791.t1 | MTR_2g014060 | 70.000 | 50 | 15 | 0 | 124 | 173 | 27 | 76 | 3.93e-21 | 94.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006791.t1 | AT3G47500 | 40.408 | 490 | 224 | 17 | 1 | 466 | 2 | 447 | 7.47e-85 | 268 |
MS.gene006791.t1 | AT5G39660 | 38.067 | 507 | 217 | 19 | 4 | 465 | 1 | 455 | 3.64e-80 | 256 |
MS.gene006791.t1 | AT5G39660 | 38.067 | 507 | 217 | 19 | 4 | 465 | 1 | 455 | 3.64e-80 | 256 |
MS.gene006791.t1 | AT5G39660 | 38.067 | 507 | 217 | 19 | 4 | 465 | 1 | 455 | 3.64e-80 | 256 |
MS.gene006791.t1 | AT5G62430 | 41.711 | 374 | 105 | 15 | 97 | 466 | 33 | 297 | 4.19e-64 | 209 |
MS.gene006791.t1 | AT1G69570 | 32.919 | 483 | 218 | 19 | 1 | 465 | 1 | 395 | 1.68e-47 | 169 |
MS.gene006791.t1 | AT1G26790 | 33.120 | 468 | 206 | 18 | 1 | 465 | 7 | 370 | 4.15e-47 | 167 |
MS.gene006791.t1 | AT1G29160 | 88.333 | 60 | 7 | 0 | 116 | 175 | 56 | 115 | 2.36e-35 | 129 |
MS.gene006791.t1 | AT2G34140 | 52.727 | 110 | 52 | 0 | 66 | 175 | 2 | 111 | 2.71e-34 | 127 |
MS.gene006791.t1 | AT5G60200 | 37.931 | 174 | 99 | 4 | 118 | 288 | 51 | 218 | 2.53e-27 | 110 |
MS.gene006791.t1 | AT4G24060 | 61.538 | 65 | 25 | 0 | 111 | 175 | 42 | 106 | 2.66e-24 | 103 |
MS.gene006791.t1 | AT1G51700 | 53.086 | 81 | 31 | 1 | 100 | 180 | 18 | 91 | 2.77e-24 | 100 |
MS.gene006791.t1 | AT3G55370 | 43.243 | 111 | 49 | 2 | 118 | 217 | 72 | 179 | 3.94e-24 | 103 |
MS.gene006791.t1 | AT3G55370 | 43.243 | 111 | 49 | 2 | 118 | 217 | 72 | 179 | 4.52e-24 | 103 |
MS.gene006791.t1 | AT5G60850 | 72.222 | 54 | 15 | 0 | 122 | 175 | 51 | 104 | 4.81e-24 | 102 |
MS.gene006791.t1 | AT2G28810 | 57.143 | 70 | 30 | 0 | 104 | 173 | 59 | 128 | 5.63e-24 | 102 |
MS.gene006791.t1 | AT3G55370 | 67.241 | 58 | 19 | 0 | 118 | 175 | 117 | 174 | 5.96e-24 | 103 |
MS.gene006791.t1 | AT3G50410 | 68.421 | 57 | 18 | 0 | 122 | 178 | 30 | 86 | 6.64e-24 | 100 |
MS.gene006791.t1 | AT2G28810 | 57.143 | 70 | 30 | 0 | 104 | 173 | 76 | 145 | 8.14e-24 | 102 |
MS.gene006791.t1 | AT1G21340 | 48.936 | 94 | 37 | 3 | 124 | 216 | 40 | 123 | 9.40e-24 | 100 |
MS.gene006791.t1 | AT2G37590 | 57.576 | 66 | 28 | 0 | 110 | 175 | 77 | 142 | 1.12e-23 | 102 |
MS.gene006791.t1 | AT1G64620 | 55.128 | 78 | 34 | 1 | 93 | 170 | 21 | 97 | 1.53e-23 | 102 |
MS.gene006791.t1 | AT3G61850 | 60.938 | 64 | 25 | 0 | 112 | 175 | 52 | 115 | 1.85e-23 | 100 |
MS.gene006791.t1 | AT3G61850 | 60.938 | 64 | 25 | 0 | 112 | 175 | 52 | 115 | 1.85e-23 | 100 |
MS.gene006791.t1 | AT3G61850 | 58.824 | 68 | 28 | 0 | 112 | 179 | 64 | 131 | 2.10e-23 | 100 |
MS.gene006791.t1 | AT3G61850 | 60.938 | 64 | 25 | 0 | 112 | 175 | 52 | 115 | 3.06e-23 | 100 |
MS.gene006791.t1 | AT3G61850 | 58.824 | 68 | 28 | 0 | 112 | 179 | 64 | 131 | 3.49e-23 | 100 |
MS.gene006791.t1 | AT3G21270 | 71.698 | 53 | 15 | 0 | 122 | 174 | 29 | 81 | 3.99e-23 | 97.4 |
MS.gene006791.t1 | AT2G28510 | 67.797 | 59 | 19 | 0 | 124 | 182 | 50 | 108 | 6.90e-23 | 98.6 |
MS.gene006791.t1 | AT1G07640 | 69.811 | 53 | 16 | 0 | 122 | 174 | 21 | 73 | 8.12e-23 | 98.2 |
MS.gene006791.t1 | AT3G45610 | 57.143 | 63 | 27 | 0 | 118 | 180 | 36 | 98 | 8.68e-23 | 97.4 |
MS.gene006791.t1 | AT1G28310 | 70.370 | 54 | 16 | 0 | 122 | 175 | 27 | 80 | 9.69e-23 | 99.0 |
MS.gene006791.t1 | AT1G07640 | 69.811 | 53 | 16 | 0 | 122 | 174 | 77 | 129 | 1.32e-22 | 99.0 |
MS.gene006791.t1 | AT1G28310 | 47.475 | 99 | 43 | 2 | 79 | 175 | 13 | 104 | 1.49e-22 | 98.6 |
MS.gene006791.t1 | AT1G07640 | 69.811 | 53 | 16 | 0 | 122 | 174 | 85 | 137 | 1.69e-22 | 98.6 |
MS.gene006791.t1 | AT5G02460 | 57.746 | 71 | 27 | 1 | 108 | 175 | 78 | 148 | 1.84e-22 | 99.4 |
MS.gene006791.t1 | AT5G66940 | 60.000 | 60 | 24 | 0 | 122 | 181 | 32 | 91 | 2.50e-22 | 95.5 |
MS.gene006791.t1 | AT5G65590 | 54.930 | 71 | 32 | 0 | 105 | 175 | 24 | 94 | 3.43e-22 | 97.4 |
MS.gene006791.t1 | AT4G00940 | 56.757 | 74 | 27 | 1 | 109 | 177 | 50 | 123 | 4.64e-22 | 96.7 |
MS.gene006791.t1 | AT4G00940 | 56.757 | 74 | 27 | 1 | 109 | 177 | 50 | 123 | 4.64e-22 | 96.7 |
MS.gene006791.t1 | AT4G00940 | 56.757 | 74 | 27 | 1 | 109 | 177 | 50 | 123 | 4.64e-22 | 96.7 |
MS.gene006791.t1 | AT1G47655 | 71.429 | 49 | 14 | 0 | 122 | 170 | 29 | 77 | 7.47e-22 | 94.0 |
MS.gene006791.t1 | AT3G52440 | 48.936 | 94 | 40 | 3 | 93 | 180 | 11 | 102 | 9.76e-22 | 95.1 |
MS.gene006791.t1 | AT4G38000 | 62.500 | 56 | 20 | 1 | 121 | 176 | 40 | 94 | 2.72e-21 | 93.2 |
MS.gene006791.t1 | AT3G52440 | 64.912 | 57 | 20 | 0 | 124 | 180 | 27 | 83 | 2.86e-21 | 93.2 |
MS.gene006791.t1 | AT2G46590 | 60.656 | 61 | 22 | 1 | 109 | 169 | 57 | 115 | 3.47e-21 | 95.1 |
MS.gene006791.t1 | AT2G46590 | 60.656 | 61 | 22 | 1 | 109 | 169 | 69 | 127 | 3.77e-21 | 95.1 |
MS.gene006791.t1 | AT4G21050 | 43.564 | 101 | 55 | 1 | 115 | 213 | 17 | 117 | 6.59e-21 | 91.3 |
MS.gene006791.t1 | AT5G62940 | 69.388 | 49 | 15 | 0 | 124 | 172 | 75 | 123 | 1.00e-19 | 90.9 |
MS.gene006791.t1 | AT4G21040 | 47.297 | 74 | 37 | 1 | 102 | 175 | 7 | 78 | 1.13e-17 | 82.4 |
MS.gene006791.t1 | AT4G21080 | 57.692 | 52 | 22 | 0 | 124 | 175 | 27 | 78 | 1.58e-16 | 79.7 |
MS.gene006791.t1 | AT4G21030 | 59.091 | 44 | 18 | 0 | 124 | 167 | 23 | 66 | 4.07e-11 | 62.8 |
Find 123 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCAGTTCTGTCCCGACTTT+GGG | 0.197222 | 4.1:-25282415 | MS.gene006791:CDS |
CCCTAATGGATTACATAGTT+TGG | 0.197772 | 4.1:-25282890 | MS.gene006791:CDS |
GTAATTAGTTCTTTCCTTGA+TGG | 0.235655 | 4.1:+25283330 | None:intergenic |
CCAAACTATGTAATCCATTA+GGG | 0.240822 | 4.1:+25282890 | None:intergenic |
AGTAACTCCACCTGCATATT+GGG | 0.244547 | 4.1:-25282512 | MS.gene006791:CDS |
TCATCAAATCTAAGTGTCTT+TGG | 0.276528 | 4.1:+25282295 | None:intergenic |
CAATATGCAGGTGGAGTTAC+TGG | 0.285499 | 4.1:+25282514 | None:intergenic |
GTAAGAAATGTCAAAGATAC+TGG | 0.307217 | 4.1:-25283029 | MS.gene006791:CDS |
ATTGTTGAAGTAACAAAATT+TGG | 0.309323 | 4.1:+25283080 | None:intergenic |
CCCAAACTATGTAATCCATT+AGG | 0.311917 | 4.1:+25282889 | None:intergenic |
ATTCCATGGATAAGGCAAAA+AGG | 0.312423 | 4.1:+25282594 | None:intergenic |
CAGTAACTCCACCTGCATAT+TGG | 0.313645 | 4.1:-25282513 | MS.gene006791:CDS |
GCTAAACTTAATTCCCCTAA+TGG | 0.325757 | 4.1:-25282904 | MS.gene006791:CDS |
GTTTCAGTTGATGGAGTCTT+AGG | 0.326230 | 4.1:+25283225 | None:intergenic |
GAATTCTCGGTTTCAGTTGA+TGG | 0.328378 | 4.1:+25283216 | None:intergenic |
GCCTCCTCCATTGAGAGAAT+TGG | 0.332869 | 4.1:+25282213 | None:intergenic |
CCTAATGGATTACATAGTTT+GGG | 0.335592 | 4.1:-25282889 | MS.gene006791:CDS |
TAGAATGCTAATGGATAGTT+TGG | 0.337503 | 4.1:+25282541 | None:intergenic |
ATCATGCAAGTTCGTATAGT+AGG | 0.370122 | 4.1:-25282756 | MS.gene006791:CDS |
TCTCAGTTCTGTCCCGACTT+TGG | 0.371870 | 4.1:-25282416 | MS.gene006791:CDS |
AAAGGCCACACCGGCACAAA+TGG | 0.375943 | 4.1:-25282673 | MS.gene006791:CDS |
GACCCTGCGATAAAGCTCTT+TGG | 0.376470 | 4.1:-25284592 | MS.gene006791:CDS |
ACAAATGGGTTGGTAGATAA+AGG | 0.391250 | 4.1:-25282658 | MS.gene006791:CDS |
AGGGAAAATGATCACTCAAT+TGG | 0.410885 | 4.1:-25282736 | MS.gene006791:CDS |
CATCAAATCTAAGTGTCTTT+GGG | 0.411049 | 4.1:+25282296 | None:intergenic |
TGATTAACAGAAGCACTTCC+TGG | 0.414702 | 4.1:+25282451 | None:intergenic |
GAACTCCTTGCAGCTTCACT+TGG | 0.415659 | 4.1:+25282271 | None:intergenic |
AGAGGGAGATGAAGAGTCAT+TGG | 0.419013 | 4.1:+25284534 | None:intergenic |
AGATTTCAATAACGAATTCT+CGG | 0.425048 | 4.1:+25283203 | None:intergenic |
TTGGTAGATAAAGGAGTTGA+AGG | 0.425049 | 4.1:-25282649 | MS.gene006791:CDS |
GGATTACATAGTTTGGGAAA+TGG | 0.427090 | 4.1:-25282883 | MS.gene006791:CDS |
ACTCAAAATTGTGTGTCAAA+TGG | 0.434475 | 4.1:-25282784 | MS.gene006791:CDS |
TGTATTGCAGAGGTGAATTC+TGG | 0.445396 | 4.1:+25284502 | None:intergenic |
AGTTCATTGTGGTCAAAGCT+TGG | 0.456620 | 4.1:-25282253 | MS.gene006791:CDS |
TTGAGTGTTTCCCCAAAGTC+GGG | 0.458025 | 4.1:+25282404 | None:intergenic |
ACTGGAGTATAGAATGCTAA+TGG | 0.468260 | 4.1:+25282532 | None:intergenic |
GTGATTCATGTCCTTTACCT+TGG | 0.468280 | 4.1:+25282171 | None:intergenic |
GTTCATTGTGGTCAAAGCTT+GGG | 0.469560 | 4.1:-25282252 | MS.gene006791:CDS |
GACAAAGCCAATTCTCTCAA+TGG | 0.470994 | 4.1:-25282220 | MS.gene006791:CDS |
TGGATAGTTTGGTGGACAAA+AGG | 0.471372 | 4.1:+25282552 | None:intergenic |
GGAGATGAAGAGTCATTGGC+AGG | 0.477484 | 4.1:+25284538 | None:intergenic |
AATGGAGGAGGCATGTTCAA+TGG | 0.477902 | 4.1:-25282202 | MS.gene006791:CDS |
ATGCTATTGCATCGCGGGCA+TGG | 0.486276 | 4.1:+25283108 | None:intergenic |
GAATTCTGGTGGAGAAGAAG+AGG | 0.486452 | 4.1:+25284516 | None:intergenic |
ATTGCAGAATTCCATGGATA+AGG | 0.486834 | 4.1:+25282586 | None:intergenic |
GAATTAAGTTTAGCACCCTC+TGG | 0.491397 | 4.1:+25282913 | None:intergenic |
TTGCGGCGACCAGCTCCAAC+AGG | 0.495368 | 4.1:+25282979 | None:intergenic |
CCGCGATAAAGCCGCAGGGT+TGG | 0.504467 | 4.1:+25282120 | None:intergenic |
AATGATCACTCAATTGGAGT+TGG | 0.507132 | 4.1:-25282730 | MS.gene006791:CDS |
AACTCCTTGCAGCTTCACTT+GGG | 0.509294 | 4.1:+25282272 | None:intergenic |
TCAAATTCATCAGATAGAAA+AGG | 0.510956 | 4.1:-25282691 | MS.gene006791:CDS |
AAGGCCACACCGGCACAAAT+GGG | 0.516822 | 4.1:-25282672 | MS.gene006791:CDS |
GGCATACAACCCCAATATGC+AGG | 0.516977 | 4.1:+25282502 | None:intergenic |
TGGATTTCAGTCCAAGGTAA+AGG | 0.518064 | 4.1:-25282182 | MS.gene006791:CDS |
CAATTAGGTTTCCTCATGGA+AGG | 0.522646 | 4.1:+25282090 | None:intergenic |
CTTGAGTGTTTCCCCAAAGT+CGG | 0.525777 | 4.1:+25282403 | None:intergenic |
TGTCAAAGATACTGGACTGC+AGG | 0.528621 | 4.1:-25283021 | MS.gene006791:CDS |
ATCTACCAACCCATTTGTGC+CGG | 0.532135 | 4.1:+25282663 | None:intergenic |
TGTCCATGCTATTGCATCGC+GGG | 0.535971 | 4.1:+25283103 | None:intergenic |
CGAGACCGCGATAAAGCCGC+AGG | 0.536771 | 4.1:+25282115 | None:intergenic |
CGACTTTGGGGAAACACTCA+AGG | 0.540052 | 4.1:-25282402 | MS.gene006791:CDS |
TCATGCAAGTTCGTATAGTA+GGG | 0.541345 | 4.1:-25282755 | MS.gene006791:CDS |
TCAGTTGATGGAGTCTTAGG+AGG | 0.550036 | 4.1:+25283228 | None:intergenic |
TTCACAATTAGGTTTCCTCA+TGG | 0.553418 | 4.1:+25282086 | None:intergenic |
ATCCTCAGTGGTTTGTTGCG+AGG | 0.554021 | 4.1:+25283290 | None:intergenic |
AATGCTAATGGATAGTTTGG+TGG | 0.554354 | 4.1:+25282544 | None:intergenic |
GAGACACATGGTATATTCCA+TGG | 0.554398 | 4.1:+25282475 | None:intergenic |
CTTCCAAAGAGCTTTATCGC+AGG | 0.556819 | 4.1:+25284589 | None:intergenic |
ACAATGAGAAATGTTCCTGT+TGG | 0.557862 | 4.1:-25282994 | MS.gene006791:CDS |
TAGTTTGGTGGACAAAAGGT+AGG | 0.562573 | 4.1:+25282556 | None:intergenic |
AATTCTGGTGGAGAAGAAGA+GGG | 0.562827 | 4.1:+25284517 | None:intergenic |
GCCAATTCTCTCAATGGAGG+AGG | 0.563194 | 4.1:-25282214 | MS.gene006791:CDS |
TTCCAAAGAGCTTTATCGCA+GGG | 0.567023 | 4.1:+25284590 | None:intergenic |
GAATATGTTGCAACTGAGGA+GGG | 0.570048 | 4.1:+25282623 | None:intergenic |
GGAGGCATTGCAGAATTCCA+TGG | 0.572249 | 4.1:+25282580 | None:intergenic |
TTTGGTGGACAAAAGGTAGG+AGG | 0.574664 | 4.1:+25282559 | None:intergenic |
GGAATATGTTGCAACTGAGG+AGG | 0.574863 | 4.1:+25282622 | None:intergenic |
AGAAATGTTCCTGTTGGAGC+TGG | 0.575931 | 4.1:-25282988 | MS.gene006791:CDS |
CTTGGAATATGTTGCAACTG+AGG | 0.581444 | 4.1:+25282619 | None:intergenic |
TTGGGGAAACACTCAAGGGA+TGG | 0.586619 | 4.1:-25282397 | MS.gene006791:CDS |
GGGGTTGTATGCCACCTCCA+TGG | 0.588317 | 4.1:-25282492 | MS.gene006791:CDS |
CATGGTATATTCCATGGAGG+TGG | 0.595774 | 4.1:+25282481 | None:intergenic |
GGTGGACAAAAGGTAGGAGG+AGG | 0.603448 | 4.1:+25282562 | None:intergenic |
CCAACCCATTTGTGCCGGTG+TGG | 0.605033 | 4.1:+25282668 | None:intergenic |
CGACATTTGATAATTCCAGA+GGG | 0.606272 | 4.1:-25282928 | MS.gene006791:CDS |
TCAGTTCTGTCCCGACTTTG+GGG | 0.606745 | 4.1:-25282414 | MS.gene006791:CDS |
CCACACCGGCACAAATGGGT+TGG | 0.611096 | 4.1:-25282668 | MS.gene006791:CDS |
GTAACTCCACCTGCATATTG+GGG | 0.611433 | 4.1:-25282511 | MS.gene006791:CDS |
CAAAGATACTGGACTGCAGG+AGG | 0.611856 | 4.1:-25283018 | MS.gene006791:CDS |
GTTCAATGGATTTCAGTCCA+AGG | 0.615097 | 4.1:-25282188 | MS.gene006791:CDS |
CTGCGATAAAGCTCTTTGGA+AGG | 0.619750 | 4.1:-25284588 | MS.gene006791:CDS |
AATATACCATGTGTCTCACC+AGG | 0.620306 | 4.1:-25282469 | MS.gene006791:CDS |
GATGTTCAATACAGAAGCCA+TGG | 0.623380 | 4.1:+25282816 | None:intergenic |
GAGATGAAGAGTCATTGGCA+GGG | 0.625244 | 4.1:+25284539 | None:intergenic |
TCGACATTTGATAATTCCAG+AGG | 0.625580 | 4.1:-25282929 | MS.gene006791:CDS |
TCATTGGCAGGGATGATCAG+TGG | 0.630276 | 4.1:+25284550 | None:intergenic |
GCACTTCCTGGTGAGACACA+TGG | 0.630353 | 4.1:+25282463 | None:intergenic |
AGTTTCATGCTGTATTGCAG+AGG | 0.631365 | 4.1:+25284492 | None:intergenic |
GACTTTGGGGAAACACTCAA+GGG | 0.631484 | 4.1:-25282401 | MS.gene006791:CDS |
ATGACCCAAGTGAAGCTGCA+AGG | 0.632038 | 4.1:-25282276 | MS.gene006791:CDS |
GTGTCCATGCTATTGCATCG+CGG | 0.634519 | 4.1:+25283102 | None:intergenic |
ATGCCCGCGATGCAATAGCA+TGG | 0.635421 | 4.1:-25283106 | MS.gene006791:CDS |
CCAACCCTGCGGCTTTATCG+CGG | 0.637960 | 4.1:-25282120 | MS.gene006791:CDS |
GGGATGATCAGTGGAAGAAG+CGG | 0.640321 | 4.1:+25284559 | None:intergenic |
GAGAGCTCTTAAATCCTCAG+TGG | 0.645204 | 4.1:+25283278 | None:intergenic |
GCAGGGTTGGCATACATCAG+CGG | 0.645757 | 4.1:+25282133 | None:intergenic |
CAAACTATGTAATCCATTAG+GGG | 0.651674 | 4.1:+25282891 | None:intergenic |
TCAGATAGAAAAGGCCACAC+CGG | 0.654081 | 4.1:-25282682 | MS.gene006791:CDS |
CTAATTACAGCACAAGACGA+TGG | 0.658149 | 4.1:-25283315 | MS.gene006791:CDS |
AAAGCCAATTCTCTCAATGG+AGG | 0.662101 | 4.1:-25282217 | MS.gene006791:CDS |
TGCAATACAGCATGAAACTG+AGG | 0.664237 | 4.1:-25284488 | MS.gene006791:intron |
GCCATGGTGTTACAAAGCGG+AGG | 0.666467 | 4.1:+25282832 | None:intergenic |
ATTGCAGAGGTGAATTCTGG+TGG | 0.675104 | 4.1:+25284505 | None:intergenic |
TCCTCCGCTTTGTAACACCA+TGG | 0.687107 | 4.1:-25282833 | MS.gene006791:CDS |
AAGCTGCAAGGAGTTCATTG+TGG | 0.697169 | 4.1:-25282264 | MS.gene006791:CDS |
GGTAAAGGACATGAATCACA+CGG | 0.721107 | 4.1:-25282167 | MS.gene006791:CDS |
ATACAACCCCAATATGCAGG+TGG | 0.724114 | 4.1:+25282505 | None:intergenic |
GAAGCCATGGTGTTACAAAG+CGG | 0.731105 | 4.1:+25282829 | None:intergenic |
GAGACCGCGATAAAGCCGCA+GGG | 0.731318 | 4.1:+25282116 | None:intergenic |
GCGGTCTCGTACCTTCCATG+AGG | 0.732623 | 4.1:-25282101 | MS.gene006791:CDS |
ACACATGGTATATTCCATGG+AGG | 0.757531 | 4.1:+25282478 | None:intergenic |
GCTGATGTATGCCAACCCTG+CGG | 0.770728 | 4.1:-25282131 | MS.gene006791:CDS |
AGCCTCGCAACAAACCACTG+AGG | 0.809905 | 4.1:-25283292 | MS.gene006791:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTATATAAAAATTGTTCA+TGG | - | chr4.1:25282859-25282878 | MS.gene006791:CDS | 10.0% |
!! | TATATAAAAATAGCAGAAAA+GGG | + | chr4.1:25283097-25283116 | None:intergenic | 15.0% |
!! | TTATATAAAAATAGCAGAAA+AGG | + | chr4.1:25283098-25283117 | None:intergenic | 15.0% |
!!! | CAATTATCAATTTTTTGTTT+TGG | - | chr4.1:25282610-25282629 | MS.gene006791:CDS | 15.0% |
!!! | TTAATCATATTCATTGTTTT+AGG | - | chr4.1:25283345-25283364 | MS.gene006791:intron | 15.0% |
!! | AATTAACTGCTTAAGAAAAA+TGG | + | chr4.1:25282326-25282345 | None:intergenic | 20.0% |
!! | ATTAACTGCTTAAGAAAAAT+GGG | + | chr4.1:25282325-25282344 | None:intergenic | 20.0% |
!! | ATTGTTGAAGTAACAAAATT+TGG | + | chr4.1:25283623-25283642 | None:intergenic | 20.0% |
!! | TAAAACTAATCTATGGTATT+TGG | + | chr4.1:25282908-25282927 | None:intergenic | 20.0% |
!! | TTAAGCAGTTAATTGTTAAT+GGG | - | chr4.1:25282332-25282351 | MS.gene006791:CDS | 20.0% |
!!! | AATACCATAGATTAGTTTTA+TGG | - | chr4.1:25282908-25282927 | MS.gene006791:CDS | 20.0% |
!!! | TTGAATCTTTTATTAAGTTG+TGG | - | chr4.1:25282468-25282487 | MS.gene006791:CDS | 20.0% |
!!! | TTTGTTTTTTACTTCTATTG+AGG | - | chr4.1:25283261-25283280 | MS.gene006791:CDS | 20.0% |
! | AAATTGGATCGAATTTATTC+TGG | - | chr4.1:25282521-25282540 | MS.gene006791:CDS | 25.0% |
! | ACATTTCTTACAAAAATGAC+GGG | + | chr4.1:25283662-25283681 | None:intergenic | 25.0% |
! | AGATTTCAATAACGAATTCT+CGG | + | chr4.1:25283500-25283519 | None:intergenic | 25.0% |
! | CTTAAGCAGTTAATTGTTAA+TGG | - | chr4.1:25282331-25282350 | MS.gene006791:CDS | 25.0% |
! | GACATTTCTTACAAAAATGA+CGG | + | chr4.1:25283663-25283682 | None:intergenic | 25.0% |
! | TAACCAAAAAACTTCAATCA+AGG | + | chr4.1:25282709-25282728 | None:intergenic | 25.0% |
! | TCAAATTCATCAGATAGAAA+AGG | - | chr4.1:25284009-25284028 | MS.gene006791:intron | 25.0% |
!! | CAAAATAGTTTAGTTCAAGT+CGG | + | chr4.1:25282741-25282760 | None:intergenic | 25.0% |
!! | TAGATAAGTTTTTGTTCTTG+CGG | + | chr4.1:25283741-25283760 | None:intergenic | 25.0% |
!! | TTTTGATGTCAATTGAATTG+AGG | - | chr4.1:25282372-25282391 | MS.gene006791:CDS | 25.0% |
!!! | CTGCATATAATTTTAGTATG+AGG | + | chr4.1:25283133-25283152 | None:intergenic | 25.0% |
!!! | TTTATGGACTGTTAGTTTTT+AGG | - | chr4.1:25282924-25282943 | MS.gene006791:CDS | 25.0% |
!!! | TTTCTTCAGAGTTTTTTCTT+CGG | + | chr4.1:25283557-25283576 | None:intergenic | 25.0% |
AACTTACTGTGTACACAAAA+GGG | + | chr4.1:25283312-25283331 | None:intergenic | 30.0% | |
AATTATGTTGTGATGTCACA+AGG | + | chr4.1:25282839-25282858 | None:intergenic | 30.0% | |
ACTCAAAATTGTGTGTCAAA+TGG | - | chr4.1:25283916-25283935 | MS.gene006791:intron | 30.0% | |
ATTGTTCATGGACATATTAC+TGG | - | chr4.1:25282871-25282890 | MS.gene006791:CDS | 30.0% | |
CAAACTATGTAATCCATTAG+GGG | + | chr4.1:25283812-25283831 | None:intergenic | 30.0% | |
CAGTCCATAAAACTAATCTA+TGG | + | chr4.1:25282915-25282934 | None:intergenic | 30.0% | |
CATCAAATCTAAGTGTCTTT+GGG | + | chr4.1:25284407-25284426 | None:intergenic | 30.0% | |
CATTTCTTACAAAAATGACG+GGG | + | chr4.1:25283661-25283680 | None:intergenic | 30.0% | |
CCAAACTATGTAATCCATTA+GGG | + | chr4.1:25283813-25283832 | None:intergenic | 30.0% | |
GAAAAAACCAAAGCAAAACA+AGG | + | chr4.1:25282591-25282610 | None:intergenic | 30.0% | |
GCATACGTGTATAAAAACAT+TGG | + | chr4.1:25283192-25283211 | None:intergenic | 30.0% | |
GTAAGAAATGTCAAAGATAC+TGG | - | chr4.1:25283671-25283690 | MS.gene006791:intron | 30.0% | |
TAACTTACTGTGTACACAAA+AGG | + | chr4.1:25283313-25283332 | None:intergenic | 30.0% | |
TCAATCATATGAAACCTTCA+TGG | + | chr4.1:25282244-25282263 | None:intergenic | 30.0% | |
TCATCAAATCTAAGTGTCTT+TGG | + | chr4.1:25284408-25284427 | None:intergenic | 30.0% | |
TCTATGAGAATCCATATATG+AGG | - | chr4.1:25283020-25283039 | MS.gene006791:CDS | 30.0% | |
! | AATTTTAAGCGCAAAGTGAA+AGG | + | chr4.1:25283000-25283019 | None:intergenic | 30.0% |
! | CGACTTGAACTAAACTATTT+TGG | - | chr4.1:25282739-25282758 | MS.gene006791:CDS | 30.0% |
! | GTAATTAGTTCTTTCCTTGA+TGG | + | chr4.1:25283373-25283392 | None:intergenic | 30.0% |
! | TAGAATGCTAATGGATAGTT+TGG | + | chr4.1:25284162-25284181 | None:intergenic | 30.0% |
!! | CCTAATGGATTACATAGTTT+GGG | - | chr4.1:25283811-25283830 | MS.gene006791:intron | 30.0% |
!! | TCATTTTCAGGCTTTTCTTT+TGG | + | chr4.1:25284354-25284373 | None:intergenic | 30.0% |
!! | TGTTTTTATACACGTATGCT+CGG | - | chr4.1:25283220-25283239 | MS.gene006791:CDS | 30.0% |
!!! | TGTTATTTTGACACAGAACA+AGG | + | chr4.1:25282792-25282811 | None:intergenic | 30.0% |
!!! | TTGCCTTGATTGAAGTTTTT+TGG | - | chr4.1:25282703-25282722 | MS.gene006791:CDS | 30.0% |
AATGATCACTCAATTGGAGT+TGG | - | chr4.1:25283970-25283989 | MS.gene006791:intron | 35.0% | |
ACAATGAGAAATGTTCCTGT+TGG | - | chr4.1:25283706-25283725 | MS.gene006791:intron | 35.0% | |
ACAGAACAAGGACATGAATA+TGG | + | chr4.1:25282780-25282799 | None:intergenic | 35.0% | |
ACTGCTTAAGAAAAATGGGT+TGG | + | chr4.1:25282321-25282340 | None:intergenic | 35.0% | |
ACTGGAGTATAGAATGCTAA+TGG | + | chr4.1:25284171-25284190 | None:intergenic | 35.0% | |
AGGGAAAATGATCACTCAAT+TGG | - | chr4.1:25283964-25283983 | MS.gene006791:intron | 35.0% | |
ATCATGCAAGTTCGTATAGT+AGG | - | chr4.1:25283944-25283963 | MS.gene006791:intron | 35.0% | |
ATTCCATGGATAAGGCAAAA+AGG | + | chr4.1:25284109-25284128 | None:intergenic | 35.0% | |
ATTCGATCCAATTTCACTGA+TGG | + | chr4.1:25282515-25282534 | None:intergenic | 35.0% | |
ATTGCAGAATTCCATGGATA+AGG | + | chr4.1:25284117-25284136 | None:intergenic | 35.0% | |
CCCAAACTATGTAATCCATT+AGG | + | chr4.1:25283814-25283833 | None:intergenic | 35.0% | |
GCTAAACTTAATTCCCCTAA+TGG | - | chr4.1:25283796-25283815 | MS.gene006791:intron | 35.0% | |
GGAATTGCTGAAATTCTCAA+TGG | - | chr4.1:25282393-25282412 | MS.gene006791:CDS | 35.0% | |
GGATTACATAGTTTGGGAAA+TGG | - | chr4.1:25283817-25283836 | MS.gene006791:intron | 35.0% | |
TATTGTAGGAGACAAGAGTA+AGG | + | chr4.1:25282950-25282969 | None:intergenic | 35.0% | |
TCATGCAAGTTCGTATAGTA+GGG | - | chr4.1:25283945-25283964 | MS.gene006791:intron | 35.0% | |
TGTGGCTCAAATTCATTATG+TGG | - | chr4.1:25282486-25282505 | MS.gene006791:CDS | 35.0% | |
TTCCATGGATAAGGCAAAAA+GGG | + | chr4.1:25284108-25284127 | None:intergenic | 35.0% | |
TTCGATCCAATTTCACTGAT+GGG | + | chr4.1:25282514-25282533 | None:intergenic | 35.0% | |
TTGGTAGATAAAGGAGTTGA+AGG | - | chr4.1:25284051-25284070 | MS.gene006791:intron | 35.0% | |
! | AATGCTAATGGATAGTTTGG+TGG | + | chr4.1:25284159-25284178 | None:intergenic | 35.0% |
! | CGACATTTGATAATTCCAGA+GGG | - | chr4.1:25283772-25283791 | MS.gene006791:intron | 35.0% |
! | TCGACATTTGATAATTCCAG+AGG | - | chr4.1:25283771-25283790 | MS.gene006791:intron | 35.0% |
! | TTCTTTTGGTGAATTGACTG+AGG | + | chr4.1:25284340-25284359 | None:intergenic | 35.0% |
!! | ACAAATGGGTTGGTAGATAA+AGG | - | chr4.1:25284042-25284061 | MS.gene006791:intron | 35.0% |
!! | CCCTAATGGATTACATAGTT+TGG | - | chr4.1:25283810-25283829 | MS.gene006791:intron | 35.0% |
!! | GTGCTATTGTGTTCATTTTC+AGG | + | chr4.1:25284366-25284385 | None:intergenic | 35.0% |
!!! | CATTGTTTTAGGAACCATCA+AGG | - | chr4.1:25283356-25283375 | MS.gene006791:intron | 35.0% |
!!! | TGGTTTACCTTGTTTTGCTT+TGG | - | chr4.1:25282581-25282600 | MS.gene006791:CDS | 35.0% |
AAAGCCAATTCTCTCAATGG+AGG | - | chr4.1:25284483-25284502 | MS.gene006791:intron | 40.0% | |
AATATACCATGTGTCTCACC+AGG | - | chr4.1:25284231-25284250 | MS.gene006791:intron | 40.0% | |
AATTCTGGTGGAGAAGAAGA+GGG | + | chr4.1:25282186-25282205 | None:intergenic | 40.0% | |
ACACATGGTATATTCCATGG+AGG | + | chr4.1:25284225-25284244 | None:intergenic | 40.0% | |
AGTAACTCCACCTGCATATT+GGG | - | chr4.1:25284188-25284207 | MS.gene006791:intron | 40.0% | |
AGTTCATTGTGGTCAAAGCT+TGG | - | chr4.1:25284447-25284466 | MS.gene006791:intron | 40.0% | |
AGTTTCATGCTGTATTGCAG+AGG | + | chr4.1:25282211-25282230 | None:intergenic | 40.0% | |
CTAATTACAGCACAAGACGA+TGG | - | chr4.1:25283385-25283404 | MS.gene006791:intron | 40.0% | |
CTTGGAATATGTTGCAACTG+AGG | + | chr4.1:25284084-25284103 | None:intergenic | 40.0% | |
GAATATGTTGCAACTGAGGA+GGG | + | chr4.1:25284080-25284099 | None:intergenic | 40.0% | |
GAATTAAGTTTAGCACCCTC+TGG | + | chr4.1:25283790-25283809 | None:intergenic | 40.0% | |
GAATTCTCGGTTTCAGTTGA+TGG | + | chr4.1:25283487-25283506 | None:intergenic | 40.0% | |
GACAAAGCCAATTCTCTCAA+TGG | - | chr4.1:25284480-25284499 | MS.gene006791:intron | 40.0% | |
GAGACACATGGTATATTCCA+TGG | + | chr4.1:25284228-25284247 | None:intergenic | 40.0% | |
GATGTTCAATACAGAAGCCA+TGG | + | chr4.1:25283887-25283906 | None:intergenic | 40.0% | |
GGTAAAGGACATGAATCACA+CGG | - | chr4.1:25284533-25284552 | MS.gene006791:CDS | 40.0% | |
GTGATTCATGTCCTTTACCT+TGG | + | chr4.1:25284532-25284551 | None:intergenic | 40.0% | |
GTTCATTGTGGTCAAAGCTT+GGG | - | chr4.1:25284448-25284467 | MS.gene006791:intron | 40.0% | |
TCCTACAATACTTATGCCTC+TGG | - | chr4.1:25282960-25282979 | MS.gene006791:CDS | 40.0% | |
TGACTCTGACTCCTCATATA+TGG | + | chr4.1:25283034-25283053 | None:intergenic | 40.0% | |
TGCAATACAGCATGAAACTG+AGG | - | chr4.1:25282212-25282231 | MS.gene006791:CDS | 40.0% | |
TGGATTTCAGTCCAAGGTAA+AGG | - | chr4.1:25284518-25284537 | MS.gene006791:CDS | 40.0% | |
TGTATTGCAGAGGTGAATTC+TGG | + | chr4.1:25282201-25282220 | None:intergenic | 40.0% | |
TTAAGCGCAAAGTGAAAGGT+TGG | + | chr4.1:25282996-25283015 | None:intergenic | 40.0% | |
! | ACCAGAGGCATAAGTATTGT+AGG | + | chr4.1:25282964-25282983 | None:intergenic | 40.0% |
! | GTTCAATGGATTTCAGTCCA+AGG | - | chr4.1:25284512-25284531 | MS.gene006791:CDS | 40.0% |
! | TAGTTTGGTGGACAAAAGGT+AGG | + | chr4.1:25284147-25284166 | None:intergenic | 40.0% |
! | TGGATAGTTTGGTGGACAAA+AGG | + | chr4.1:25284151-25284170 | None:intergenic | 40.0% |
! | TTCCAAAGAGCTTTATCGCA+GGG | + | chr4.1:25282113-25282132 | None:intergenic | 40.0% |
!! | CGGGCATGGAATTATTTTGT+CGG | + | chr4.1:25283581-25283600 | None:intergenic | 40.0% |
!! | GGGCATGGAATTATTTTGTC+GGG | + | chr4.1:25283580-25283599 | None:intergenic | 40.0% |
!! | GTTTCAGTTGATGGAGTCTT+AGG | + | chr4.1:25283478-25283497 | None:intergenic | 40.0% |
!! | TGATTAACAGAAGCACTTCC+TGG | + | chr4.1:25284252-25284271 | None:intergenic | 40.0% |
AACTCCTTGCAGCTTCACTT+GGG | + | chr4.1:25284431-25284450 | None:intergenic | 45.0% | |
AAGCTGCAAGGAGTTCATTG+TGG | - | chr4.1:25284436-25284455 | MS.gene006791:intron | 45.0% | |
AGAAATGTTCCTGTTGGAGC+TGG | - | chr4.1:25283712-25283731 | MS.gene006791:intron | 45.0% | |
AGAGGGAGATGAAGAGTCAT+TGG | + | chr4.1:25282169-25282188 | None:intergenic | 45.0% | |
ATACAACCCCAATATGCAGG+TGG | + | chr4.1:25284198-25284217 | None:intergenic | 45.0% | |
ATCTACCAACCCATTTGTGC+CGG | + | chr4.1:25284040-25284059 | None:intergenic | 45.0% | |
ATTGCAGAGGTGAATTCTGG+TGG | + | chr4.1:25282198-25282217 | None:intergenic | 45.0% | |
CAATATGCAGGTGGAGTTAC+TGG | + | chr4.1:25284189-25284208 | None:intergenic | 45.0% | |
CAGTAACTCCACCTGCATAT+TGG | - | chr4.1:25284187-25284206 | MS.gene006791:intron | 45.0% | |
CATGGTATATTCCATGGAGG+TGG | + | chr4.1:25284222-25284241 | None:intergenic | 45.0% | |
CTGCGATAAAGCTCTTTGGA+AGG | - | chr4.1:25282112-25282131 | MS.gene006791:CDS | 45.0% | |
CTTGAGTGTTTCCCCAAAGT+CGG | + | chr4.1:25284300-25284319 | None:intergenic | 45.0% | |
GAATTCTGGTGGAGAAGAAG+AGG | + | chr4.1:25282187-25282206 | None:intergenic | 45.0% | |
GAGAGCTCTTAAATCCTCAG+TGG | + | chr4.1:25283425-25283444 | None:intergenic | 45.0% | |
GAGATGAAGAGTCATTGGCA+GGG | + | chr4.1:25282164-25282183 | None:intergenic | 45.0% | |
GGAATATGTTGCAACTGAGG+AGG | + | chr4.1:25284081-25284100 | None:intergenic | 45.0% | |
GGATAAGGCAAAAAGGGACT+TGG | + | chr4.1:25284102-25284121 | None:intergenic | 45.0% | |
GTAACTCCACCTGCATATTG+GGG | - | chr4.1:25284189-25284208 | MS.gene006791:intron | 45.0% | |
GTGGTTCCCATCAGTGAAAT+TGG | - | chr4.1:25282505-25282524 | MS.gene006791:CDS | 45.0% | |
TCAGATAGAAAAGGCCACAC+CGG | - | chr4.1:25284018-25284037 | MS.gene006791:intron | 45.0% | |
TGTCAAAGATACTGGACTGC+AGG | - | chr4.1:25283679-25283698 | MS.gene006791:intron | 45.0% | |
TTGAGTGTTTCCCCAAAGTC+GGG | + | chr4.1:25284299-25284318 | None:intergenic | 45.0% | |
! | AATGGAGGAGGCATGTTCAA+TGG | - | chr4.1:25284498-25284517 | MS.gene006791:CDS | 45.0% |
! | CTTCCAAAGAGCTTTATCGC+AGG | + | chr4.1:25282114-25282133 | None:intergenic | 45.0% |
! | GACTTTGGGGAAACACTCAA+GGG | - | chr4.1:25284299-25284318 | MS.gene006791:intron | 45.0% |
! | GTCCCTTTTTGCCTTATCCA+TGG | - | chr4.1:25284103-25284122 | MS.gene006791:intron | 45.0% |
! | TCTTACAAAAATGACGGGGC+TGG | + | chr4.1:25283657-25283676 | None:intergenic | 45.0% |
! | TTTGGTGGACAAAAGGTAGG+AGG | + | chr4.1:25284144-25284163 | None:intergenic | 45.0% |
!! | GAAGCCATGGTGTTACAAAG+CGG | + | chr4.1:25283874-25283893 | None:intergenic | 45.0% |
!! | TCAGTTGATGGAGTCTTAGG+AGG | + | chr4.1:25283475-25283494 | None:intergenic | 45.0% |
!! | ATAATATTTAATATATTATG+TGG | - | chr4.1:25282561-25282580 | MS.gene006791:CDS | 5.0% |
AACTGAGGTACGTGCCATGA+AGG | - | chr4.1:25282227-25282246 | MS.gene006791:CDS | 50.0% | |
ATGACCCAAGTGAAGCTGCA+AGG | - | chr4.1:25284424-25284443 | MS.gene006791:intron | 50.0% | |
CAAAGATACTGGACTGCAGG+AGG | - | chr4.1:25283682-25283701 | MS.gene006791:intron | 50.0% | |
CTCAGTTCTGTCCCGACTTT+GGG | - | chr4.1:25284285-25284304 | MS.gene006791:intron | 50.0% | |
GAACTCCTTGCAGCTTCACT+TGG | + | chr4.1:25284432-25284451 | None:intergenic | 50.0% | |
GACCCTGCGATAAAGCTCTT+TGG | - | chr4.1:25282108-25282127 | MS.gene006791:CDS | 50.0% | |
GCCAATTCTCTCAATGGAGG+AGG | - | chr4.1:25284486-25284505 | MS.gene006791:intron | 50.0% | |
GCCTCCTCCATTGAGAGAAT+TGG | + | chr4.1:25284490-25284509 | None:intergenic | 50.0% | |
GGAGATGAAGAGTCATTGGC+AGG | + | chr4.1:25282165-25282184 | None:intergenic | 50.0% | |
GGCATACAACCCCAATATGC+AGG | + | chr4.1:25284201-25284220 | None:intergenic | 50.0% | |
GGGATGATCAGTGGAAGAAG+CGG | + | chr4.1:25282144-25282163 | None:intergenic | 50.0% | |
GTGTCCATGCTATTGCATCG+CGG | + | chr4.1:25283601-25283620 | None:intergenic | 50.0% | |
TCAGTTCTGTCCCGACTTTG+GGG | - | chr4.1:25284286-25284305 | MS.gene006791:intron | 50.0% | |
TCATTGGCAGGGATGATCAG+TGG | + | chr4.1:25282153-25282172 | None:intergenic | 50.0% | |
TCCTCCGCTTTGTAACACCA+TGG | - | chr4.1:25283867-25283886 | MS.gene006791:intron | 50.0% | |
TCTCAGTTCTGTCCCGACTT+TGG | - | chr4.1:25284284-25284303 | MS.gene006791:intron | 50.0% | |
TGTCCATGCTATTGCATCGC+GGG | + | chr4.1:25283600-25283619 | None:intergenic | 50.0% | |
TTGGGGAAACACTCAAGGGA+TGG | - | chr4.1:25284303-25284322 | MS.gene006791:intron | 50.0% | |
! | CGACTTTGGGGAAACACTCA+AGG | - | chr4.1:25284298-25284317 | MS.gene006791:intron | 50.0% |
!! | ATCCTCAGTGGTTTGTTGCG+AGG | + | chr4.1:25283413-25283432 | None:intergenic | 50.0% |
!! | GGAGGCATTGCAGAATTCCA+TGG | + | chr4.1:25284123-25284142 | None:intergenic | 50.0% |
!! | GGTTGGTGAATTCACACCAG+AGG | + | chr4.1:25282979-25282998 | None:intergenic | 50.0% |
AAAGGCCACACCGGCACAAA+TGG | - | chr4.1:25284027-25284046 | MS.gene006791:intron | 55.0% | |
AAGGCCACACCGGCACAAAT+GGG | - | chr4.1:25284028-25284047 | MS.gene006791:intron | 55.0% | |
AGCCTCGCAACAAACCACTG+AGG | - | chr4.1:25283408-25283427 | MS.gene006791:intron | 55.0% | |
ATGCCCGCGATGCAATAGCA+TGG | - | chr4.1:25283594-25283613 | MS.gene006791:intron | 55.0% | |
ATGCTATTGCATCGCGGGCA+TGG | + | chr4.1:25283595-25283614 | None:intergenic | 55.0% | |
GCACTTCCTGGTGAGACACA+TGG | + | chr4.1:25284240-25284259 | None:intergenic | 55.0% | |
GCTGATGTATGCCAACCCTG+CGG | - | chr4.1:25284569-25284588 | MS.gene006791:CDS | 55.0% | |
GGTGGACAAAAGGTAGGAGG+AGG | + | chr4.1:25284141-25284160 | None:intergenic | 55.0% | |
! | GCAGGGTTGGCATACATCAG+CGG | + | chr4.1:25284570-25284589 | None:intergenic | 55.0% |
!! | GCCATGGTGTTACAAAGCGG+AGG | + | chr4.1:25283871-25283890 | None:intergenic | 55.0% |
CCACACCGGCACAAATGGGT+TGG | - | chr4.1:25284032-25284051 | MS.gene006791:intron | 60.0% | |
GAGACCGCGATAAAGCCGCA+GGG | + | chr4.1:25284587-25284606 | None:intergenic | 60.0% | |
GCGGTCTCGTACCTTCCATG+AGG | - | chr4.1:25284599-25284618 | MS.gene006791:CDS | 60.0% | |
GGGGTTGTATGCCACCTCCA+TGG | - | chr4.1:25284208-25284227 | MS.gene006791:intron | 60.0% | |
! | CCAACCCATTTGTGCCGGTG+TGG | + | chr4.1:25284035-25284054 | None:intergenic | 60.0% |
! | CCAACCCTGCGGCTTTATCG+CGG | - | chr4.1:25284580-25284599 | MS.gene006791:CDS | 60.0% |
CCGCGATAAAGCCGCAGGGT+TGG | + | chr4.1:25284583-25284602 | None:intergenic | 65.0% | |
CGAGACCGCGATAAAGCCGC+AGG | + | chr4.1:25284588-25284607 | None:intergenic | 65.0% | |
TTGCGGCGACCAGCTCCAAC+AGG | + | chr4.1:25283724-25283743 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 25282093 | 25284629 | 25282093 | ID=MS.gene006791 |
chr4.1 | mRNA | 25282093 | 25284629 | 25282093 | ID=MS.gene006791.t1;Parent=MS.gene006791 |
chr4.1 | exon | 25284489 | 25284629 | 25284489 | ID=MS.gene006791.t1.exon1;Parent=MS.gene006791.t1 |
chr4.1 | CDS | 25284489 | 25284629 | 25284489 | ID=cds.MS.gene006791.t1;Parent=MS.gene006791.t1 |
chr4.1 | exon | 25282093 | 25283355 | 25282093 | ID=MS.gene006791.t1.exon2;Parent=MS.gene006791.t1 |
chr4.1 | CDS | 25282093 | 25283355 | 25282093 | ID=cds.MS.gene006791.t1;Parent=MS.gene006791.t1 |
Gene Sequence |
Protein sequence |