Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006795.t1 | AES89938.1 | 71.1 | 273 | 79 | 0 | 1 | 273 | 1 | 273 | 5.00E-91 | 344.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006795.t1 | G7JG89 | 71.1 | 273 | 79 | 0 | 1 | 273 | 1 | 273 | 3.6e-91 | 344.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene006795.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006795.t1 | MTR_4g081980 | 90.110 | 273 | 27 | 0 | 1 | 273 | 1 | 273 | 1.32e-174 | 482 |
| MS.gene006795.t1 | MTR_4g085660 | 47.525 | 303 | 119 | 9 | 1 | 267 | 1 | 299 | 1.18e-66 | 209 |
| MS.gene006795.t1 | MTR_4g085700 | 46.429 | 308 | 116 | 9 | 1 | 267 | 1 | 300 | 1.93e-61 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006795.t1 | AT1G49770 | 31.474 | 251 | 108 | 6 | 73 | 267 | 59 | 301 | 2.33e-25 | 102 |
Find 40 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCCATTTCTACATTT+TGG | 0.093907 | 4.1:+25200119 | None:intergenic |
| CCTCCACTGAAATTGCATTT+TGG | 0.191221 | 4.1:+25197871 | None:intergenic |
| TGACTTTAGATGATGATAAA+TGG | 0.249362 | 4.1:-25200240 | MS.gene006795:CDS |
| AGCTAGCAGCAGGAGAAATT+AGG | 0.262683 | 4.1:-25197839 | MS.gene006795:CDS |
| TTCATCTCCGCAAATGTTAA+AGG | 0.277405 | 4.1:+25198970 | None:intergenic |
| AATGGTTCTTTGTTCTCATT+TGG | 0.286563 | 4.1:+25200160 | None:intergenic |
| GCTAGCAGCAGGAGAAATTA+GGG | 0.304341 | 4.1:-25197838 | MS.gene006795:CDS |
| CTCATTGATTCAATGTCTAA+TGG | 0.319505 | 4.1:+25200142 | None:intergenic |
| AACATCTTGTGCAATGATAA+TGG | 0.343823 | 4.1:-25198854 | MS.gene006795:CDS |
| CACATTGCTTCTTATTCACT+AGG | 0.390758 | 4.1:+25200092 | None:intergenic |
| ATTTGAAACTTACATGGGCT+TGG | 0.392532 | 4.1:+25198816 | None:intergenic |
| AATGAGCCAAAATGTAGAAA+TGG | 0.410797 | 4.1:-25200125 | MS.gene006795:CDS |
| AATGTTACCTTTAACATTTG+CGG | 0.450475 | 4.1:-25198977 | MS.gene006795:CDS |
| GATTCCTCATCTTACTTACA+AGG | 0.453723 | 4.1:-25199915 | MS.gene006795:intron |
| AAAACAAACTCTTGAAAAGC+TGG | 0.453918 | 4.1:-25199128 | MS.gene006795:CDS |
| GATGAGGAATCAAATCTTGA+AGG | 0.457081 | 4.1:+25199927 | None:intergenic |
| ATTTGGTTTATCAGAAATGA+AGG | 0.457704 | 4.1:+25200177 | None:intergenic |
| AAAATTGTTGTCAACAAGCC+TGG | 0.495164 | 4.1:+25198917 | None:intergenic |
| ATGTGTGAAAATCAATCATC+GGG | 0.496092 | 4.1:-25200202 | MS.gene006795:CDS |
| TAAGAAGCAATGTGAGGGAG+GGG | 0.496799 | 4.1:-25200083 | MS.gene006795:CDS |
| ATTATCATTGCACAAGATGT+TGG | 0.497659 | 4.1:+25198856 | None:intergenic |
| ATGCACGTGCTGAGAGAGAA+AGG | 0.501549 | 4.1:-25199979 | MS.gene006795:CDS |
| GAAAGTTACAAGCTAGCAGC+AGG | 0.519236 | 4.1:-25197849 | MS.gene006795:CDS |
| AATAAGAAGCAATGTGAGGG+AGG | 0.525488 | 4.1:-25200085 | MS.gene006795:CDS |
| ACATTGCTTCTTATTCACTA+GGG | 0.529713 | 4.1:+25200093 | None:intergenic |
| TTTGGTTTATCAGAAATGAA+GGG | 0.532763 | 4.1:+25200178 | None:intergenic |
| CATGTGTGAAAATCAATCAT+CGG | 0.538236 | 4.1:-25200203 | MS.gene006795:CDS |
| CTTCACTGCTTCCTCCACAA+TGG | 0.569321 | 4.1:+25199165 | None:intergenic |
| TTTATCATCATCTAAAGTCA+TGG | 0.573233 | 4.1:+25200243 | None:intergenic |
| ATAAGAAGCAATGTGAGGGA+GGG | 0.586200 | 4.1:-25200084 | MS.gene006795:CDS |
| TTGGTTTATCAGAAATGAAG+GGG | 0.597449 | 4.1:+25200179 | None:intergenic |
| TTTACCTTGTAAGTAAGATG+AGG | 0.598129 | 4.1:+25199911 | None:intergenic |
| GTGAATAAGAAGCAATGTGA+GGG | 0.611245 | 4.1:-25200088 | MS.gene006795:CDS |
| CCAAAATGCAATTTCAGTGG+AGG | 0.613831 | 4.1:-25197871 | MS.gene006795:CDS |
| AAGCCAAAATGCAATTTCAG+TGG | 0.614102 | 4.1:-25197874 | MS.gene006795:CDS |
| ATATACACAACTAAGAAGCC+AGG | 0.619168 | 4.1:-25198935 | MS.gene006795:CDS |
| GGTAGATTCTGTAACCATTG+TGG | 0.628284 | 4.1:-25199179 | MS.gene006795:CDS |
| CTAGCAGCAGGAGAAATTAG+GGG | 0.636230 | 4.1:-25197837 | MS.gene006795:CDS |
| AGATTCTGTAACCATTGTGG+AGG | 0.646571 | 4.1:-25199176 | MS.gene006795:CDS |
| AGTGAATAAGAAGCAATGTG+AGG | 0.680971 | 4.1:-25200089 | MS.gene006795:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAAAAAAAAAAAAAGT+TGG | + | chr4.1:25199956-25199975 | None:intergenic | 10.0% |
| !! | TTAAATGTTAAAAATGATAA+GGG | - | chr4.1:25198028-25198047 | MS.gene006795:intron | 10.0% |
| !! | TTTAAATGTTAAAAATGATA+AGG | - | chr4.1:25198027-25198046 | MS.gene006795:intron | 10.0% |
| !! | AAAATTGAAAGGATAAAATT+AGG | + | chr4.1:25198307-25198326 | None:intergenic | 15.0% |
| !! | AATACAACAAAAAAAAGTTT+GGG | - | chr4.1:25198701-25198720 | MS.gene006795:intron | 15.0% |
| !! | CTTTAACTAAATTCAAATAT+GGG | - | chr4.1:25198585-25198604 | MS.gene006795:intron | 15.0% |
| !! | TAAATGTTAAAAATGATAAG+GGG | - | chr4.1:25198029-25198048 | MS.gene006795:intron | 15.0% |
| !! | TAATACAACAAAAAAAAGTT+TGG | - | chr4.1:25198700-25198719 | MS.gene006795:intron | 15.0% |
| !!! | ACAAAATTTTCATTGAAAAA+TGG | + | chr4.1:25198228-25198247 | None:intergenic | 15.0% |
| !!! | ATTACATTCATTTTTAAGAT+TGG | - | chr4.1:25198183-25198202 | MS.gene006795:intron | 15.0% |
| !!! | GAGTTTTTCATTTTTTTTTT+TGG | + | chr4.1:25200059-25200078 | None:intergenic | 15.0% |
| !!! | GTCTAAATTTTAAATTACTA+AGG | - | chr4.1:25198651-25198670 | MS.gene006795:intron | 15.0% |
| !!! | TAGTAATTTAAAATTTAGAC+TGG | + | chr4.1:25198651-25198670 | None:intergenic | 15.0% |
| !! | GCTTTAACTAAATTCAAATA+TGG | - | chr4.1:25198584-25198603 | MS.gene006795:intron | 20.0% |
| !! | TCAATATATATGCTATGTTA+CGG | + | chr4.1:25199434-25199453 | None:intergenic | 20.0% |
| !!! | AATTGAATTTGAAACTTACA+TGG | + | chr4.1:25199261-25199280 | None:intergenic | 20.0% |
| !!! | ATAAACTTTAGGTTTGTTTA+CGG | + | chr4.1:25199884-25199903 | None:intergenic | 20.0% |
| !!! | ATTGAATTTGAAACTTACAT+GGG | + | chr4.1:25199260-25199279 | None:intergenic | 20.0% |
| !!! | ATTTTTTATTCTTTGTACCA+TGG | - | chr4.1:25198408-25198427 | MS.gene006795:intron | 20.0% |
| !!! | TAATTTAAAATTTAGACTGG+AGG | + | chr4.1:25198648-25198667 | None:intergenic | 20.0% |
| !!! | TGCTTTGTATTTAATTTCTT+TGG | - | chr4.1:25198864-25198883 | MS.gene006795:CDS | 20.0% |
| !!! | TTTTTGTTGTATTAATTCGT+TGG | + | chr4.1:25198694-25198713 | None:intergenic | 20.0% |
| ! | AATGTTACCTTTAACATTTG+CGG | - | chr4.1:25199091-25199110 | MS.gene006795:CDS | 25.0% |
| ! | ATTAAATCAATGTTACACCT+AGG | + | chr4.1:25198836-25198855 | None:intergenic | 25.0% |
| ! | TGACTTTAGATGATGATAAA+TGG | - | chr4.1:25197828-25197847 | MS.gene006795:CDS | 25.0% |
| !! | ATCAAAATTGAATCGATTCA+TGG | + | chr4.1:25198553-25198572 | None:intergenic | 25.0% |
| !! | ATTTGGTTTATCAGAAATGA+AGG | + | chr4.1:25197894-25197913 | None:intergenic | 25.0% |
| !! | CATGGATCTTTATTTAAGAA+AGG | - | chr4.1:25199714-25199733 | MS.gene006795:intron | 25.0% |
| !! | CATTTCTTTTGACAAAAAAG+AGG | - | chr4.1:25199525-25199544 | MS.gene006795:intron | 25.0% |
| !! | TAAACTTTAGGTTTGTTTAC+GGG | + | chr4.1:25199883-25199902 | None:intergenic | 25.0% |
| !! | TCTTTATTTCATTATCCATG+TGG | - | chr4.1:25200114-25200133 | MS.gene006795:CDS | 25.0% |
| !! | TTAGCAAAATACTTTTCTTC+TGG | + | chr4.1:25199921-25199940 | None:intergenic | 25.0% |
| !! | TTGTATTTAATTTCTTTGGC+AGG | - | chr4.1:25198868-25198887 | MS.gene006795:CDS | 25.0% |
| !! | TTTATCATCATCTAAAGTCA+TGG | + | chr4.1:25197828-25197847 | None:intergenic | 25.0% |
| !! | TTTGGTTTATCAGAAATGAA+GGG | + | chr4.1:25197893-25197912 | None:intergenic | 25.0% |
| !!! | ATGAATAATCGGTTTGAAAT+AGG | + | chr4.1:25198765-25198784 | None:intergenic | 25.0% |
| !!! | ATGAATCGATTCAATTTTGA+TGG | - | chr4.1:25198552-25198571 | MS.gene006795:intron | 25.0% |
| !!! | TGTCATGAAAAGTTTTATTG+CGG | - | chr4.1:25199741-25199760 | MS.gene006795:intron | 25.0% |
| AAAACAAACTCTTGAAAAGC+TGG | - | chr4.1:25198940-25198959 | MS.gene006795:CDS | 30.0% | |
| AAAGTTTATCCTTTGACTAC+TGG | - | chr4.1:25199895-25199914 | MS.gene006795:intron | 30.0% | |
| AACATCTTGTGCAATGATAA+TGG | - | chr4.1:25199214-25199233 | MS.gene006795:intron | 30.0% | |
| AATGAGCCAAAATGTAGAAA+TGG | - | chr4.1:25197943-25197962 | MS.gene006795:intron | 30.0% | |
| AATGGTTCTTTGTTCTCATT+TGG | + | chr4.1:25197911-25197930 | None:intergenic | 30.0% | |
| ACATTGCTTCTTATTCACTA+GGG | + | chr4.1:25197978-25197997 | None:intergenic | 30.0% | |
| ACTAAATTCAAATATGGGCT+TGG | - | chr4.1:25198590-25198609 | MS.gene006795:intron | 30.0% | |
| ACTTTGATGTCAATGATCAT+CGG | - | chr4.1:25199679-25199698 | MS.gene006795:intron | 30.0% | |
| ATGTATATATAGCAACACCT+AGG | - | chr4.1:25198816-25198835 | MS.gene006795:intron | 30.0% | |
| ATGTGTGAAAATCAATCATC+GGG | - | chr4.1:25197866-25197885 | MS.gene006795:CDS | 30.0% | |
| ATTATCATTGCACAAGATGT+TGG | + | chr4.1:25199215-25199234 | None:intergenic | 30.0% | |
| CATGTGTGAAAATCAATCAT+CGG | - | chr4.1:25197865-25197884 | MS.gene006795:CDS | 30.0% | |
| CGGATTTAAACTGTGAATAA+TGG | + | chr4.1:25199414-25199433 | None:intergenic | 30.0% | |
| CTAGTACTTGTAGAGTAATT+TGG | - | chr4.1:25199317-25199336 | MS.gene006795:intron | 30.0% | |
| GAGAAAGGAGAAAAAAAATG+AGG | - | chr4.1:25198104-25198123 | MS.gene006795:intron | 30.0% | |
| GTAGTCAAAGGATAAACTTT+AGG | + | chr4.1:25199895-25199914 | None:intergenic | 30.0% | |
| GTGCTCAAAATTAGTGTTTA+GGG | - | chr4.1:25199590-25199609 | MS.gene006795:intron | 30.0% | |
| TAAGTCTAAATGAGTGACTT+AGG | - | chr4.1:25199615-25199634 | MS.gene006795:intron | 30.0% | |
| TCTTACATACTCTCTTCTAT+TGG | + | chr4.1:25199364-25199383 | None:intergenic | 30.0% | |
| TGTGCTCAAAATTAGTGTTT+AGG | - | chr4.1:25199589-25199608 | MS.gene006795:intron | 30.0% | |
| TTGAGTTATTTACATCCACA+TGG | + | chr4.1:25200132-25200151 | None:intergenic | 30.0% | |
| TTGGTTTATCAGAAATGAAG+GGG | + | chr4.1:25197892-25197911 | None:intergenic | 30.0% | |
| TTTACCTTGTAAGTAAGATG+AGG | + | chr4.1:25198160-25198179 | None:intergenic | 30.0% | |
| ! | AAAATTGAATCGATTCATGG+AGG | + | chr4.1:25198550-25198569 | None:intergenic | 30.0% |
| ! | AATGACGTGCAAATTTTTCT+TGG | + | chr4.1:25198491-25198510 | None:intergenic | 30.0% |
| ! | CTTCTTCCATTTCTACATTT+TGG | + | chr4.1:25197952-25197971 | None:intergenic | 30.0% |
| ! | GTGACTTAGGTTTTCTTTTT+TGG | - | chr4.1:25199628-25199647 | MS.gene006795:intron | 30.0% |
| ! | TTTTTCTTGGATGATATCAG+CGG | + | chr4.1:25198478-25198497 | None:intergenic | 30.0% |
| !! | AAGATAGACGCTTTTTGTTT+AGG | - | chr4.1:25199792-25199811 | MS.gene006795:intron | 30.0% |
| !! | AGAACTTTTGTGATTTGTGT+CGG | - | chr4.1:25199558-25199577 | MS.gene006795:intron | 30.0% |
| !! | CTCATTGATTCAATGTCTAA+TGG | + | chr4.1:25197929-25197948 | None:intergenic | 30.0% |
| !! | TTGATTTGTGTTAATGTTGC+AGG | - | chr4.1:25200152-25200171 | MS.gene006795:CDS | 30.0% |
| AAAATTGTTGTCAACAAGCC+TGG | + | chr4.1:25199154-25199173 | None:intergenic | 35.0% | |
| AAGCCAAAATGCAATTTCAG+TGG | - | chr4.1:25200194-25200213 | MS.gene006795:CDS | 35.0% | |
| AGTGAATAAGAAGCAATGTG+AGG | - | chr4.1:25197979-25197998 | MS.gene006795:intron | 35.0% | |
| ATATACACAACTAAGAAGCC+AGG | - | chr4.1:25199133-25199152 | MS.gene006795:CDS | 35.0% | |
| CAACAAAAAAAAGTTTGGGC+AGG | - | chr4.1:25198705-25198724 | MS.gene006795:intron | 35.0% | |
| CACATTGCTTCTTATTCACT+AGG | + | chr4.1:25197979-25197998 | None:intergenic | 35.0% | |
| CATCGGATTTATTTCAGTCA+TGG | - | chr4.1:25199696-25199715 | MS.gene006795:intron | 35.0% | |
| CATTATTGTTCTCCGAAGAA+AGG | + | chr4.1:25199850-25199869 | None:intergenic | 35.0% | |
| CTCAAGCGAAATCGTAAAAA+TGG | + | chr4.1:25199498-25199517 | None:intergenic | 35.0% | |
| GATGAGGAATCAAATCTTGA+AGG | + | chr4.1:25198144-25198163 | None:intergenic | 35.0% | |
| GATTCCTCATCTTACTTACA+AGG | - | chr4.1:25198153-25198172 | MS.gene006795:intron | 35.0% | |
| GTACTTGTAGAGTAATTTGG+AGG | - | chr4.1:25199320-25199339 | MS.gene006795:intron | 35.0% | |
| GTGAATAAGAAGCAATGTGA+GGG | - | chr4.1:25197980-25197999 | MS.gene006795:intron | 35.0% | |
| TAAAGATGCATGTGTACTCA+CGG | + | chr4.1:25200100-25200119 | None:intergenic | 35.0% | |
| TCTTCGGAGAACAATAATGT+GGG | - | chr4.1:25199851-25199870 | MS.gene006795:intron | 35.0% | |
| TTCATCTCCGCAAATGTTAA+AGG | + | chr4.1:25199101-25199120 | None:intergenic | 35.0% | |
| TTCTTCCTTAGTCCTTTCTT+CGG | - | chr4.1:25199835-25199854 | MS.gene006795:intron | 35.0% | |
| TTCTTCGGAGAACAATAATG+TGG | - | chr4.1:25199850-25199869 | MS.gene006795:intron | 35.0% | |
| TTTATTCTTTGTACCATGGC+AGG | - | chr4.1:25198412-25198431 | MS.gene006795:intron | 35.0% | |
| ! | ATTTGAAACTTACATGGGCT+TGG | + | chr4.1:25199255-25199274 | None:intergenic | 35.0% |
| ! | GACAACAATTTTTCATGCGA+TGG | - | chr4.1:25199162-25199181 | MS.gene006795:CDS | 35.0% |
| !! | CTTGGTGCACATTTTATGAA+AGG | + | chr4.1:25198265-25198284 | None:intergenic | 35.0% |
| !! | TAATCGGTTTGAAATAGGAG+CGG | + | chr4.1:25198760-25198779 | None:intergenic | 35.0% |
| !!! | TTTTAGTTTGAACTCGCAGA+TGG | - | chr4.1:25199024-25199043 | MS.gene006795:CDS | 35.0% |
| !!! | TTTTTTGGTCTCGATGTTGA+CGG | - | chr4.1:25199643-25199662 | MS.gene006795:intron | 35.0% |
| AAAGTAAACTTGTCCTGCCA+TGG | + | chr4.1:25198428-25198447 | None:intergenic | 40.0% | |
| AAGAATGTGTGTGTTCGAGA+AGG | - | chr4.1:25199380-25199399 | MS.gene006795:intron | 40.0% | |
| AATAAGAAGCAATGTGAGGG+AGG | - | chr4.1:25197983-25198002 | MS.gene006795:intron | 40.0% | |
| AGATTCTGTAACCATTGTGG+AGG | - | chr4.1:25198892-25198911 | MS.gene006795:CDS | 40.0% | |
| ATAAGAAGCAATGTGAGGGA+GGG | - | chr4.1:25197984-25198003 | MS.gene006795:intron | 40.0% | |
| CAAAAAAAAGTTTGGGCAGG+AGG | - | chr4.1:25198708-25198727 | MS.gene006795:intron | 40.0% | |
| CCAAAATGCAATTTCAGTGG+AGG | - | chr4.1:25200197-25200216 | MS.gene006795:CDS | 40.0% | |
| GGTAGATTCTGTAACCATTG+TGG | - | chr4.1:25198889-25198908 | MS.gene006795:CDS | 40.0% | |
| ! | CACGAGCTTTTCAACAAATG+TGG | - | chr4.1:25199059-25199078 | MS.gene006795:CDS | 40.0% |
| ! | CCTCCACTGAAATTGCATTT+TGG | + | chr4.1:25200200-25200219 | None:intergenic | 40.0% |
| ! | TGGGCTTGGATTTTTCTCAA+TGG | - | chr4.1:25198604-25198623 | MS.gene006795:intron | 40.0% |
| !! | AATCGGTTTGAAATAGGAGC+GGG | + | chr4.1:25198759-25198778 | None:intergenic | 40.0% |
| AGCTAGCAGCAGGAGAAATT+AGG | - | chr4.1:25200229-25200248 | MS.gene006795:CDS | 45.0% | |
| ATGACACATCCACGACACTA+CGG | + | chr4.1:25199769-25199788 | None:intergenic | 45.0% | |
| CAAAACACTCTTCGAGGACT+TGG | + | chr4.1:25198283-25198302 | None:intergenic | 45.0% | |
| CTAGCAGCAGGAGAAATTAG+GGG | - | chr4.1:25200231-25200250 | MS.gene006795:CDS | 45.0% | |
| GAAAGTTACAAGCTAGCAGC+AGG | - | chr4.1:25200219-25200238 | MS.gene006795:CDS | 45.0% | |
| GCTAGCAGCAGGAGAAATTA+GGG | - | chr4.1:25200230-25200249 | MS.gene006795:CDS | 45.0% | |
| GTTCTCCGAAGAAAGGACTA+AGG | + | chr4.1:25199843-25199862 | None:intergenic | 45.0% | |
| TAAGAAGCAATGTGAGGGAG+GGG | - | chr4.1:25197985-25198004 | MS.gene006795:intron | 45.0% | |
| TTAGGCCAAAACACTCTTCG+AGG | + | chr4.1:25198289-25198308 | None:intergenic | 45.0% | |
| TTCTTCTGGCCAGTAGTCAA+AGG | + | chr4.1:25199907-25199926 | None:intergenic | 45.0% | |
| !!! | CAAGTCCTCGAAGAGTGTTT+TGG | - | chr4.1:25198281-25198300 | MS.gene006795:intron | 45.0% |
| !! | AAAAAAAAAAAAAAATTGAA+AGG | + | chr4.1:25198318-25198337 | None:intergenic | 5.0% |
| !!! | ATAAATTTTATATGAATAAT+CGG | + | chr4.1:25198776-25198795 | None:intergenic | 5.0% |
| ATGCACGTGCTGAGAGAGAA+AGG | - | chr4.1:25198089-25198108 | MS.gene006795:intron | 50.0% | |
| CTTCACTGCTTCCTCCACAA+TGG | + | chr4.1:25198906-25198925 | None:intergenic | 50.0% | |
| TGACACATCCACGACACTAC+GGG | + | chr4.1:25199768-25199787 | None:intergenic | 50.0% | |
| TGCACGTCATTCGACATGCA+TGG | - | chr4.1:25198500-25198519 | MS.gene006795:intron | 50.0% | |
| TGGGCAGGAGGTTGAGATTA+GGG | - | chr4.1:25198720-25198739 | MS.gene006795:intron | 50.0% | |
| TTGGGCAGGAGGTTGAGATT+AGG | - | chr4.1:25198719-25198738 | MS.gene006795:intron | 50.0% | |
| GACACATCCACGACACTACG+GGG | + | chr4.1:25199767-25199786 | None:intergenic | 55.0% | |
| ATTGCGGCCCCGTAGTGTCG+TGG | - | chr4.1:25199757-25199776 | MS.gene006795:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 25197821 | 25200269 | 25197821 | ID=MS.gene006795 |
| chr4.1 | mRNA | 25197821 | 25200269 | 25197821 | ID=MS.gene006795.t1;Parent=MS.gene006795 |
| chr4.1 | exon | 25199916 | 25200269 | 25199916 | ID=MS.gene006795.t1.exon1;Parent=MS.gene006795.t1 |
| chr4.1 | CDS | 25199916 | 25200269 | 25199916 | ID=cds.MS.gene006795.t1;Parent=MS.gene006795.t1 |
| chr4.1 | exon | 25198829 | 25199200 | 25198829 | ID=MS.gene006795.t1.exon2;Parent=MS.gene006795.t1 |
| chr4.1 | CDS | 25198829 | 25199200 | 25198829 | ID=cds.MS.gene006795.t1;Parent=MS.gene006795.t1 |
| chr4.1 | exon | 25197821 | 25197916 | 25197821 | ID=MS.gene006795.t1.exon3;Parent=MS.gene006795.t1 |
| chr4.1 | CDS | 25197821 | 25197916 | 25197821 | ID=cds.MS.gene006795.t1;Parent=MS.gene006795.t1 |
| Gene Sequence |
| Protein sequence |
