AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006808


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006808.t1 MTR_4g082305 97.755 490 11 0 1 490 1 490 0.0 989
MS.gene006808.t1 MTR_4g082305 97.183 284 8 0 1 284 1 284 0.0 571
MS.gene006808.t1 MTR_3g082690 26.797 459 291 20 37 473 43 478 3.06e-25 108
MS.gene006808.t1 MTR_1g115980 27.891 294 175 10 54 334 33 302 1.48e-17 84.3
MS.gene006808.t1 MTR_1g115980 27.891 294 175 10 54 334 33 302 1.53e-17 84.7
MS.gene006808.t1 MTR_1g115980 27.891 294 175 10 54 334 33 302 1.71e-17 85.1
MS.gene006808.t1 MTR_1g115980 27.891 294 175 10 54 334 33 302 1.80e-17 84.7
MS.gene006808.t1 MTR_1g115980 27.891 294 175 10 54 334 33 302 1.93e-17 85.1
MS.gene006808.t1 MTR_1g115980 27.891 294 175 10 54 334 33 302 2.34e-17 84.7
MS.gene006808.t1 MTR_7g076590 29.412 323 150 13 55 311 8 318 3.96e-15 78.2
MS.gene006808.t1 MTR_1g077040 30.052 193 121 6 60 244 11 197 8.40e-13 70.9
MS.gene006808.t1 MTR_6g023320 24.171 422 261 17 61 446 73 471 2.31e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006808.t1 AT1G14030 64.286 462 156 3 23 483 24 477 0.0 611
MS.gene006808.t1 AT3G07670 29.618 314 197 13 44 346 63 363 8.73e-23 101
MS.gene006808.t1 AT4G20130 25.814 430 234 17 80 470 99 482 3.43e-18 87.4
MS.gene006808.t1 AT3G07670 31.441 229 137 10 126 346 9 225 9.62e-18 85.1
MS.gene006808.t1 AT3G55080 25.070 355 228 12 4 349 2 327 5.72e-17 83.6
MS.gene006808.t1 AT4G20130 25.779 353 195 12 139 470 57 363 5.01e-15 77.0
MS.gene006808.t1 AT4G20130 25.779 353 195 12 139 470 57 363 5.01e-15 77.0
MS.gene006808.t1 AT5G14260 25.575 391 239 15 85 445 115 483 2.13e-12 69.7
MS.gene006808.t1 AT5G14260 25.575 391 239 15 85 445 115 483 2.13e-12 69.7
MS.gene006808.t1 AT5G14260 25.575 391 239 15 85 445 115 483 2.13e-12 69.7
MS.gene006808.t1 AT3G55080 24.615 260 172 9 97 349 1 243 3.10e-12 68.6
MS.gene006808.t1 AT3G55080 24.615 260 172 9 97 349 1 243 3.10e-12 68.6
MS.gene006808.t1 AT3G55080 26.009 223 148 8 133 349 6 217 1.10e-11 66.6
MS.gene006808.t1 AT3G55080 24.664 223 146 7 133 349 6 212 1.98e-11 65.9

Find 111 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACACTGGATGACTTCTTC+TGG 0.230073 4.1:-24942662 MS.gene006808:CDS
GGGTACCGATGCTTTCTTAT+TGG 0.244903 4.1:-24941432 MS.gene006808:CDS
ACTACTAACCTTGAAGTTCT+TGG 0.282877 4.1:+24942919 None:intergenic
GATGACTTCTTCTGGGCATT+TGG 0.290567 4.1:-24942654 MS.gene006808:CDS
CTCCAGCAGTTCAAACCTTC+TGG 0.294167 4.1:-24943367 MS.gene006808:CDS
ACCAGCAAGGGCGGATTTGC+AGG 0.304466 4.1:+24941319 None:intergenic
GGATTTATCCACAACCTCTT+AGG 0.337946 4.1:+24943221 None:intergenic
GCAGAGTTGGCTCTGGACTA+TGG 0.343115 4.1:-24941647 MS.gene006808:CDS
TTCCAGAAGGTTTGAACTGC+TGG 0.346946 4.1:+24943365 None:intergenic
CAGATGAAGAGTTGGTCCTT+TGG 0.353677 4.1:+24943445 None:intergenic
GCCTGCAAATCCGCCCTTGC+TGG 0.360260 4.1:-24941320 MS.gene006808:CDS
CACTGTTCAGAGACTCCATC+TGG 0.373117 4.1:-24941406 MS.gene006808:CDS
GATCTTCGAGCAGAAAGAAT+TGG 0.388839 4.1:-24940959 MS.gene006808:CDS
CTGTAGTCACTCTGGCACTA+TGG 0.394416 4.1:+24942138 None:intergenic
AAACTGATTCTACAATATAT+TGG 0.395083 4.1:-24943061 MS.gene006808:intron
TTCTGTCAAGGCAGGAGAAC+AGG 0.398267 4.1:-24942039 MS.gene006808:intron
GCAACCAATCCTAAACCTTC+TGG 0.402948 4.1:+24943284 None:intergenic
CTCAAGGATCTTGGACTTTG+CGG 0.406199 4.1:-24940901 MS.gene006808:CDS
GAAAGGAGGCTCAAGGATCT+TGG 0.407166 4.1:-24940910 MS.gene006808:CDS
GAAGAATGAATGTCTGAAAC+TGG 0.408078 4.1:-24942730 MS.gene006808:CDS
TATGCATATCGATCTGCATT+TGG 0.408825 4.1:+24941614 None:intergenic
TTCTCCTGCCTTGACAGAAA+GGG 0.411526 4.1:+24942043 None:intergenic
GCTACTGATTTGACAGAGAA+AGG 0.414228 4.1:+24943416 None:intergenic
GACACTGGATGACTTCTTCT+GGG 0.421868 4.1:-24942661 MS.gene006808:CDS
GCTGTTGCTGCTTCAGAGAT+AGG 0.422947 4.1:-24943194 MS.gene006808:CDS
ACTAGCTTTCACTGGTGTCT+TGG 0.428693 4.1:+24943313 None:intergenic
AGTGCTACTAATCTCAGATA+TGG 0.428804 4.1:+24941458 None:intergenic
TCTGAAGCAGCAACAGCATC+AGG 0.439199 4.1:+24943200 None:intergenic
TTTCTTGATAATATTCCAAC+TGG 0.444121 4.1:+24940929 None:intergenic
TGTGATTCCACTTGCAGACT+TGG 0.445510 4.1:-24942583 MS.gene006808:intron
TGTTGTTTCTTATTAGAGAA+AGG 0.454728 4.1:-24943133 MS.gene006808:CDS
GGTCAAGAGAGGATTCTGTT+TGG 0.455743 4.1:-24943112 MS.gene006808:CDS
ATAGTTTATTACCTGTTCAA+TGG 0.458942 4.1:+24941286 None:intergenic
TGCAGGTGCCTAAGAGGTTG+TGG 0.460079 4.1:-24943229 MS.gene006808:CDS
CATTTGGAATTCTCAGATCA+AGG 0.465096 4.1:-24942638 MS.gene006808:CDS
GTTCTCCTGCCTTGACAGAA+AGG 0.468467 4.1:+24942042 None:intergenic
AGATATGGAAGCATCCCTTC+TGG 0.477120 4.1:+24941473 None:intergenic
CTCCTCATTATCACGGCTCA+TGG 0.477204 4.1:+24941367 None:intergenic
AAGCAATGCAGAGTTGGCTC+TGG 0.478444 4.1:-24941654 MS.gene006808:CDS
CTCCATCTGGGGTCATCTTG+AGG 0.481584 4.1:-24941393 MS.gene006808:CDS
AAGAGGCAAATCTAGATTCA+AGG 0.484970 4.1:-24941041 MS.gene006808:CDS
AAGAAGTCATCCAGTGTCAC+AGG 0.486528 4.1:+24942666 None:intergenic
GAAGAGCTCCAAGAACTTCA+AGG 0.489004 4.1:-24942927 MS.gene006808:intron
GGTACCACACTAGCTTTCAC+TGG 0.496675 4.1:+24943305 None:intergenic
TCTGTTTGGAAGCATTACTT+TGG 0.496732 4.1:-24943098 MS.gene006808:CDS
GGGATTACCTATTTGCCCTA+AGG 0.498091 4.1:-24942070 MS.gene006808:CDS
AAACAAAAGCAATGCAGAGT+TGG 0.498255 4.1:-24941660 MS.gene006808:CDS
TTATCACACAACCATTGAAC+AGG 0.500689 4.1:-24941297 MS.gene006808:intron
CAGTTCAAACCTTCTGGAAG+TGG 0.501931 4.1:-24943361 MS.gene006808:CDS
AGTGTGGTACCAGAAGGTTT+AGG 0.510846 4.1:-24943293 MS.gene006808:CDS
TATGCATACACCTTGACACT+GGG 0.512341 4.1:-24941599 MS.gene006808:CDS
TTACTTTGGTATTCTGCCAC+AGG 0.513694 4.1:-24943084 MS.gene006808:CDS
AGATCTCATCAATTTGCTGC+AGG 0.518502 4.1:+24940977 None:intergenic
TCATCCAGTGTCACAGGAGA+AGG 0.518798 4.1:+24942672 None:intergenic
GGAAGCATCCCTTCTGGAAG+AGG 0.525978 4.1:+24941479 None:intergenic
GCCCATGAGCCGTGATAATG+AGG 0.527832 4.1:-24941369 MS.gene006808:CDS
ATCTGAGATTAGTAGCACTA+GGG 0.531413 4.1:-24941454 MS.gene006808:CDS
GGTTTCTTCAGATGAAGAGT+TGG 0.531719 4.1:+24943437 None:intergenic
CTGTTGCTGCTTCAGAGATA+GGG 0.532011 4.1:-24943193 MS.gene006808:CDS
TCTCCTGCCTTGACAGAAAG+GGG 0.533728 4.1:+24942044 None:intergenic
CTTGGACTTTGCGGTGAAAG+TGG 0.534968 4.1:-24940892 MS.gene006808:CDS
AGTTGGAATATTATCAAGAA+AGG 0.536592 4.1:-24940927 MS.gene006808:CDS
AGAATTGGAACTAGACCAGT+TGG 0.537321 4.1:-24940944 MS.gene006808:CDS
GTCAAATCAGTAGCTTCACT+TGG 0.539419 4.1:-24943407 MS.gene006808:CDS
TCCTCATTATCACGGCTCAT+GGG 0.543503 4.1:+24941368 None:intergenic
TATGAAGTCAAAGGACCAGC+TGG 0.544591 4.1:-24942104 MS.gene006808:CDS
TTCTTGTAGCCACTTCCAGA+AGG 0.547912 4.1:+24943352 None:intergenic
GCAGGATCGCAAGCTGAAAG+AGG 0.551716 4.1:-24941058 MS.gene006808:intron
CACCTCAAGATGACCCCAGA+TGG 0.552036 4.1:+24941391 None:intergenic
TCCCAAGAGAAAAGACCAGC+TGG 0.553440 4.1:+24942089 None:intergenic
GGTACCAGAAGGTTTAGGAT+TGG 0.557599 4.1:-24943288 MS.gene006808:CDS
ACTGTTCAGAGACTCCATCT+GGG 0.560536 4.1:-24941405 MS.gene006808:CDS
TGGAAGTGGCTACAAGAAGA+AGG 0.567416 4.1:-24943347 MS.gene006808:CDS
TATTAGAGAAAGGTCAAGAG+AGG 0.570783 4.1:-24943123 MS.gene006808:CDS
TATAACCGCCCTCTTCCAGA+AGG 0.578293 4.1:-24941488 MS.gene006808:CDS
ATGATCATCTGTAGTCACTC+TGG 0.581191 4.1:+24942130 None:intergenic
GATCATGCTTATGAAGTCAA+AGG 0.581508 4.1:-24942113 MS.gene006808:CDS
ATTTGGAATTCTCAGATCAA+GGG 0.583610 4.1:-24942637 MS.gene006808:CDS
TATCTGAGATTAGTAGCACT+AGG 0.584493 4.1:-24941455 MS.gene006808:CDS
ATATGCATACACCTTGACAC+TGG 0.586569 4.1:-24941600 MS.gene006808:CDS
CTCGGATATCCCCAGTGTCA+AGG 0.587901 4.1:+24941589 None:intergenic
GTTATTCCAGTGCAGGTCAG+AGG 0.594794 4.1:-24942949 MS.gene006808:intron
TAGCAGTCGGAATAAGAGAA+GGG 0.598131 4.1:-24941011 MS.gene006808:CDS
GTAGACGTTGCTGAGACCAA+TGG 0.600772 4.1:-24941542 MS.gene006808:CDS
TCAAGGCTTGCAATAGCAGT+CGG 0.600784 4.1:-24941024 MS.gene006808:CDS
TGGAATATTATCAAGAAAGG+AGG 0.602703 4.1:-24940924 MS.gene006808:CDS
CTCCTGCCTTGACAGAAAGG+GGG 0.606795 4.1:+24942045 None:intergenic
GTTCTTACCAAGTCTGCAAG+TGG 0.608009 4.1:+24942576 None:intergenic
ATAGCAGTCGGAATAAGAGA+AGG 0.608578 4.1:-24941012 MS.gene006808:CDS
TTATCAAGAAAGGAGGCTCA+AGG 0.609776 4.1:-24940917 MS.gene006808:CDS
AAAGCTAGTGTGGTACCAGA+AGG 0.610016 4.1:-24943299 MS.gene006808:CDS
GGTGAAAGTGGTGATGTCCT+TGG 0.620946 4.1:-24940880 MS.gene006808:CDS
GGTTGTGTGATAACCAGCAA+GGG 0.628035 4.1:+24941307 None:intergenic
TGGTTGTGTGATAACCAGCA+AGG 0.629031 4.1:+24941306 None:intergenic
AGCAGTCGGAATAAGAGAAG+GGG 0.636940 4.1:-24941010 MS.gene006808:CDS
GAAGCATCCCTTCTGGAAGA+GGG 0.639736 4.1:+24941480 None:intergenic
ATACTAGCTCCTCATTATCA+CGG 0.640006 4.1:+24941360 None:intergenic
TGCTGCTTCAGAGATAGGGA+AGG 0.648122 4.1:-24943189 MS.gene006808:CDS
ATTGTAGAATCAGTTTCCTG+TGG 0.648786 4.1:+24943068 None:intergenic
ATAACCGCCCTCTTCCAGAA+GGG 0.651691 4.1:-24941487 MS.gene006808:CDS
TGATTCCAATAAGAAAGCAT+CGG 0.654051 4.1:+24941427 None:intergenic
GACACCAGTGAAAGCTAGTG+TGG 0.671601 4.1:-24943309 MS.gene006808:CDS
TCTGAGATTAGTAGCACTAG+GGG 0.673869 4.1:-24941453 MS.gene006808:CDS
CTGTTCAGAGACTCCATCTG+GGG 0.675062 4.1:-24941404 MS.gene006808:CDS
TGTGTGATAACCAGCAAGGG+CGG 0.678647 4.1:+24941310 None:intergenic
ATGCATACACCTTGACACTG+GGG 0.698561 4.1:-24941598 MS.gene006808:CDS
GCATCCCTTCTGGAAGAGGG+CGG 0.703925 4.1:+24941483 None:intergenic
AACAACATAACAGACAACCA+TGG 0.720499 4.1:+24943149 None:intergenic
CTGAGATTAGTAGCACTAGG+GGG 0.740933 4.1:-24941452 MS.gene006808:CDS
TGTGTAGTAAGTTGACACCA+TGG 0.752669 4.1:-24943166 MS.gene006808:CDS
TGAGGAGCTAGTATGCAAAG+CGG 0.776917 4.1:-24941351 MS.gene006808:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATCAATATTTGAAAACA+TGG + chr4.1:24941509-24941528 None:intergenic 15.0%
!! TAATCAATATTTGAAAACAT+GGG + chr4.1:24941508-24941527 None:intergenic 15.0%
!!! AAACTGATTCTACAATATAT+TGG - chr4.1:24941318-24941337 MS.gene006808:CDS 20.0%
!!! TGCTTTTGTTTAAATCATAT+TGG + chr4.1:24942710-24942729 None:intergenic 20.0%
! AAACAAGTAAAGACTCAATT+TGG + chr4.1:24942134-24942153 None:intergenic 25.0%
! AAGGAAAAAGCTTCTTATTA+GGG + chr4.1:24941691-24941710 None:intergenic 25.0%
! AGGTAATAAACTATACATTC+AGG - chr4.1:24943102-24943121 MS.gene006808:CDS 25.0%
! AGTTGGAATATTATCAAGAA+AGG - chr4.1:24943452-24943471 MS.gene006808:CDS 25.0%
! ATAGTTTATTACCTGTTCAA+TGG + chr4.1:24943096-24943115 None:intergenic 25.0%
! ATGAAAAGAAACATATGAAG+AGG + chr4.1:24942379-24942398 None:intergenic 25.0%
! CAATATGCTTCAACAAAAAA+TGG - chr4.1:24942179-24942198 MS.gene006808:intron 25.0%
! GGTAATAAACTATACATTCA+GGG - chr4.1:24943103-24943122 MS.gene006808:CDS 25.0%
! TGATTCTACAATATATTGGT+GGG - chr4.1:24941322-24941341 MS.gene006808:CDS 25.0%
!! GAAATTGAGTTCTTTTCATA+TGG - chr4.1:24941384-24941403 MS.gene006808:CDS 25.0%
!! TCAACATCTATTAGTTTACA+AGG - chr4.1:24942040-24942059 MS.gene006808:CDS 25.0%
!! TTTCTTGATAATATTCCAAC+TGG + chr4.1:24943453-24943472 None:intergenic 25.0%
!! TTTTGTTGAAGCATATTGAT+GGG + chr4.1:24942177-24942196 None:intergenic 25.0%
!! TTTTTGTTGAAGCATATTGA+TGG + chr4.1:24942178-24942197 None:intergenic 25.0%
!!! TAGAAATGATGTTATTTTGC+AGG - chr4.1:24941133-24941152 MS.gene006808:intron 25.0%
!!! TGTTGTTTCTTATTAGAGAA+AGG - chr4.1:24941246-24941265 MS.gene006808:intron 25.0%
!!! TTTGGATTAGTTTCTAACTT+AGG + chr4.1:24942116-24942135 None:intergenic 25.0%
ACAGAAGAAGAGAAATGAAA+AGG + chr4.1:24941828-24941847 None:intergenic 30.0%
ATTCAGTTCATTCAAAGTTC+AGG + chr4.1:24941579-24941598 None:intergenic 30.0%
CTACTTTGTCGTCAAAAAAA+GGG + chr4.1:24942821-24942840 None:intergenic 30.0%
CTGATTCTACAATATATTGG+TGG - chr4.1:24941321-24941340 MS.gene006808:CDS 30.0%
CTTAAGAACATTAACTGATC+TGG + chr4.1:24941931-24941950 None:intergenic 30.0%
GAAGGAAAAAGCTTCTTATT+AGG + chr4.1:24941692-24941711 None:intergenic 30.0%
GAGAGTTTCTCAATTAAAAC+CGG + chr4.1:24942094-24942113 None:intergenic 30.0%
TATTCTCATTACCATCATGT+TGG + chr4.1:24943131-24943150 None:intergenic 30.0%
TCTACTTTGTCGTCAAAAAA+AGG + chr4.1:24942822-24942841 None:intergenic 30.0%
TCTGATCCAGAAATTGAATT+CGG + chr4.1:24942217-24942236 None:intergenic 30.0%
TGGAATATTATCAAGAAAGG+AGG - chr4.1:24943455-24943474 MS.gene006808:CDS 30.0%
TTCTGCTACAAATTGAACTT+AGG - chr4.1:24942008-24942027 MS.gene006808:intron 30.0%
TTGAATGAACTGAATTGAGT+AGG - chr4.1:24941584-24941603 MS.gene006808:CDS 30.0%
! AAATCATCTTTTGCAACCAA+AGG - chr4.1:24940918-24940937 MS.gene006808:CDS 30.0%
! ATGCTTCTTTTTCCTTGATA+TGG + chr4.1:24942519-24942538 None:intergenic 30.0%
! ATTGCATTTTACGTAGTACA+TGG - chr4.1:24943232-24943251 MS.gene006808:CDS 30.0%
! ATTTGGAATTCTCAGATCAA+GGG - chr4.1:24941742-24941761 MS.gene006808:intron 30.0%
! CATTTTCCGAATTCAATTTC+TGG - chr4.1:24942208-24942227 MS.gene006808:intron 30.0%
! TGATTCCAATAAGAAAGCAT+CGG + chr4.1:24942955-24942974 None:intergenic 30.0%
! TTCTCTTTTCACACAAACAA+GGG - chr4.1:24940894-24940913 MS.gene006808:CDS 30.0%
! TTGAGTTCTTTTCATATGGT+TGG - chr4.1:24941388-24941407 MS.gene006808:CDS 30.0%
! TTGCATTTTACGTAGTACAT+GGG - chr4.1:24943233-24943252 MS.gene006808:CDS 30.0%
! TTTTCATGCTTCTCAATTCT+TGG - chr4.1:24942637-24942656 MS.gene006808:CDS 30.0%
AAACAAAAGCAATGCAGAGT+TGG - chr4.1:24942719-24942738 MS.gene006808:CDS 35.0%
AACAACATAACAGACAACCA+TGG + chr4.1:24941233-24941252 None:intergenic 35.0%
AAGAGGCAAATCTAGATTCA+AGG - chr4.1:24943338-24943357 MS.gene006808:CDS 35.0%
ACTACTAACCTTGAAGTTCT+TGG + chr4.1:24941463-24941482 None:intergenic 35.0%
ATACTAGCTCCTCATTATCA+CGG + chr4.1:24943022-24943041 None:intergenic 35.0%
ATTGTAGAATCAGTTTCCTG+TGG + chr4.1:24941314-24941333 None:intergenic 35.0%
GATCATGCTTATGAAGTCAA+AGG - chr4.1:24942266-24942285 MS.gene006808:intron 35.0%
GTACTACGTAAAATGCAATG+AGG + chr4.1:24943231-24943250 None:intergenic 35.0%
TATGCATATCGATCTGCATT+TGG + chr4.1:24942768-24942787 None:intergenic 35.0%
TATTAGAGAAAGGTCAAGAG+AGG - chr4.1:24941256-24941275 MS.gene006808:intron 35.0%
TTATCACACAACCATTGAAC+AGG - chr4.1:24943082-24943101 MS.gene006808:CDS 35.0%
TTCATTCAAAGTTCAGGATG+TGG + chr4.1:24941573-24941592 None:intergenic 35.0%
! AGGACTTCTTTTGTATGTGA+AGG - chr4.1:24942060-24942079 MS.gene006808:CDS 35.0%
! AGTGCTACTAATCTCAGATA+TGG + chr4.1:24942924-24942943 None:intergenic 35.0%
! ATATGGTTGGTTGATTCAGT+TGG - chr4.1:24941401-24941420 MS.gene006808:CDS 35.0%
! ATCTGAGATTAGTAGCACTA+GGG - chr4.1:24942925-24942944 MS.gene006808:intron 35.0%
! CAACTAGATTTTCATTGCGA+AGG + chr4.1:24941778-24941797 None:intergenic 35.0%
! CATTTGGAATTCTCAGATCA+AGG - chr4.1:24941741-24941760 MS.gene006808:intron 35.0%
! CTTCTCTTTTCACACAAACA+AGG - chr4.1:24940893-24940912 MS.gene006808:CDS 35.0%
! GAAGAATGAATGTCTGAAAC+TGG - chr4.1:24941649-24941668 MS.gene006808:CDS 35.0%
! GGACTTCTTTTGTATGTGAA+GGG - chr4.1:24942061-24942080 MS.gene006808:CDS 35.0%
! TATCTGAGATTAGTAGCACT+AGG - chr4.1:24942924-24942943 MS.gene006808:intron 35.0%
! TCTAAAATTATGTCCACGCT+GGG + chr4.1:24941907-24941926 None:intergenic 35.0%
!! TCTGTTTGGAAGCATTACTT+TGG - chr4.1:24941281-24941300 MS.gene006808:intron 35.0%
!! TGGTTGATTCAGTTGGTAAT+TGG - chr4.1:24941408-24941427 MS.gene006808:CDS 35.0%
!!! ATTGGTGGGTTTCTTTTGTT+TGG - chr4.1:24941336-24941355 MS.gene006808:CDS 35.0%
!!! CAGTTGGTAACTTTTACTGT+AGG - chr4.1:24942677-24942696 MS.gene006808:CDS 35.0%
AAAGTTCTGCTGCAACTTTC+TGG + chr4.1:24942568-24942587 None:intergenic 40.0%
AGAATTGGAACTAGACCAGT+TGG - chr4.1:24943435-24943454 MS.gene006808:CDS 40.0%
ATAGCAGTCGGAATAAGAGA+AGG - chr4.1:24943367-24943386 MS.gene006808:CDS 40.0%
ATATGCATACACCTTGACAC+TGG - chr4.1:24942779-24942798 MS.gene006808:intron 40.0%
ATGATCATCTGTAGTCACTC+TGG + chr4.1:24942252-24942271 None:intergenic 40.0%
CACATTCATAACTGTGCAGT+TGG - chr4.1:24942661-24942680 MS.gene006808:CDS 40.0%
GAACAAAGCATGCAAATTGC+AGG - chr4.1:24943303-24943322 MS.gene006808:CDS 40.0%
GATCTTCGAGCAGAAAGAAT+TGG - chr4.1:24943420-24943439 MS.gene006808:CDS 40.0%
GGATTTATCCACAACCTCTT+AGG + chr4.1:24941161-24941180 None:intergenic 40.0%
GGTTTCTTCAGATGAAGAGT+TGG + chr4.1:24940945-24940964 None:intergenic 40.0%
GTAATTGGTTATTCCAGTGC+AGG - chr4.1:24941423-24941442 MS.gene006808:CDS 40.0%
GTCAAAAAAAGGGTCTGACT+CGG + chr4.1:24942811-24942830 None:intergenic 40.0%
GTCAAATCAGTAGCTTCACT+TGG - chr4.1:24940972-24940991 MS.gene006808:CDS 40.0%
TAGCAGTCGGAATAAGAGAA+GGG - chr4.1:24943368-24943387 MS.gene006808:CDS 40.0%
TATGCATACACCTTGACACT+GGG - chr4.1:24942780-24942799 MS.gene006808:intron 40.0%
TGCTGTCTGAGAAAAACCAT+TGG + chr4.1:24942856-24942875 None:intergenic 40.0%
TTACTTTGGTATTCTGCCAC+AGG - chr4.1:24941295-24941314 MS.gene006808:intron 40.0%
TTATCAAGAAAGGAGGCTCA+AGG - chr4.1:24943462-24943481 MS.gene006808:CDS 40.0%
TTTCCTTGATATGGAAGAGC+TGG + chr4.1:24942510-24942529 None:intergenic 40.0%
! AGTATTTTGCAAGGTCTCCA+AGG + chr4.1:24943519-24943538 None:intergenic 40.0%
! ATGGCTACAATCTTTTCTGG+AGG - chr4.1:24940858-24940877 MS.gene006808:CDS 40.0%
! GCAATCCAAGCTGTATTTTG+AGG - chr4.1:24942588-24942607 MS.gene006808:CDS 40.0%
! TCTGAGATTAGTAGCACTAG+GGG - chr4.1:24942926-24942945 MS.gene006808:intron 40.0%
! TGTGTAGTAAGTTGACACCA+TGG - chr4.1:24941213-24941232 MS.gene006808:intron 40.0%
!! AGATCTCATCAATTTGCTGC+AGG + chr4.1:24943405-24943424 None:intergenic 40.0%
!! CTCTAAAATTATGTCCACGC+TGG + chr4.1:24941908-24941927 None:intergenic 40.0%
!! CTTTCTGGCTCTGATACATT+TGG + chr4.1:24942553-24942572 None:intergenic 40.0%
!! GCTACTGATTTGACAGAGAA+AGG + chr4.1:24940966-24940985 None:intergenic 40.0%
!! TTATTTTGCAGGTGCCTAAG+AGG - chr4.1:24941144-24941163 MS.gene006808:intron 40.0%
AAAGCTAGTGTGGTACCAGA+AGG - chr4.1:24941080-24941099 MS.gene006808:intron 45.0%
AAGAAGTCATCCAGTGTCAC+AGG + chr4.1:24941716-24941735 None:intergenic 45.0%
AATACATCCATGTCCATCCG+AGG - chr4.1:24942431-24942450 MS.gene006808:intron 45.0%
ACTGTTCAGAGACTCCATCT+GGG - chr4.1:24942974-24942993 MS.gene006808:intron 45.0%
AGCAGTCGGAATAAGAGAAG+GGG - chr4.1:24943369-24943388 MS.gene006808:CDS 45.0%
AGTGTGGTACCAGAAGGTTT+AGG - chr4.1:24941086-24941105 MS.gene006808:intron 45.0%
ATACATCCATGTCCATCCGA+GGG - chr4.1:24942432-24942451 MS.gene006808:intron 45.0%
ATGCATACACCTTGACACTG+GGG - chr4.1:24942781-24942800 MS.gene006808:intron 45.0%
CATTCAGGGTTCCAACATGA+TGG - chr4.1:24943117-24943136 MS.gene006808:CDS 45.0%
CTCAAGGATCTTGGACTTTG+CGG - chr4.1:24943478-24943497 MS.gene006808:CDS 45.0%
CTGAGATTAGTAGCACTAGG+GGG - chr4.1:24942927-24942946 MS.gene006808:intron 45.0%
GAAGAGCTCCAAGAACTTCA+AGG - chr4.1:24941452-24941471 MS.gene006808:CDS 45.0%
GACACTGGATGACTTCTTCT+GGG - chr4.1:24941718-24941737 MS.gene006808:intron 45.0%
GATGACTTCTTCTGGGCATT+TGG - chr4.1:24941725-24941744 MS.gene006808:intron 45.0%
GCAACCAATCCTAAACCTTC+TGG + chr4.1:24941098-24941117 None:intergenic 45.0%
GGGATTACCTATTTGCCCTA+AGG - chr4.1:24942309-24942328 MS.gene006808:intron 45.0%
GGTCAAGAGAGGATTCTGTT+TGG - chr4.1:24941267-24941286 MS.gene006808:intron 45.0%
GGTTGTGTGATAACCAGCAA+GGG + chr4.1:24943075-24943094 None:intergenic 45.0%
GTTCTTACCAAGTCTGCAAG+TGG + chr4.1:24941806-24941825 None:intergenic 45.0%
TAGCCAGCTCTTCCATATCA+AGG - chr4.1:24942504-24942523 MS.gene006808:intron 45.0%
TATGAAGTCAAAGGACCAGC+TGG - chr4.1:24942275-24942294 MS.gene006808:intron 45.0%
TCAAGGCTTGCAATAGCAGT+CGG - chr4.1:24943355-24943374 MS.gene006808:CDS 45.0%
TCCTCATTATCACGGCTCAT+GGG + chr4.1:24943014-24943033 None:intergenic 45.0%
TCTGTATCATGCAGCTGTAG+AGG - chr4.1:24941843-24941862 MS.gene006808:intron 45.0%
TGACACTGGATGACTTCTTC+TGG - chr4.1:24941717-24941736 MS.gene006808:intron 45.0%
TGAGGAGCTAGTATGCAAAG+CGG - chr4.1:24943028-24943047 MS.gene006808:intron 45.0%
TGGAAGTGGCTACAAGAAGA+AGG - chr4.1:24941032-24941051 MS.gene006808:CDS 45.0%
TGGTTGTGTGATAACCAGCA+AGG + chr4.1:24943076-24943095 None:intergenic 45.0%
TGTCTATGATATTCCCAGCG+TGG - chr4.1:24941891-24941910 MS.gene006808:intron 45.0%
TGTGATTCCACTTGCAGACT+TGG - chr4.1:24941796-24941815 MS.gene006808:intron 45.0%
TTCCAGAAGGTTTGAACTGC+TGG + chr4.1:24941017-24941036 None:intergenic 45.0%
TTCTCCTGCCTTGACAGAAA+GGG + chr4.1:24942339-24942358 None:intergenic 45.0%
TTCTTGTAGCCACTTCCAGA+AGG + chr4.1:24941030-24941049 None:intergenic 45.0%
TTGCGCCTCAAAATACAGCT+TGG + chr4.1:24942596-24942615 None:intergenic 45.0%
! CAGATGAAGAGTTGGTCCTT+TGG + chr4.1:24940937-24940956 None:intergenic 45.0%
! CAGTTCAAACCTTCTGGAAG+TGG - chr4.1:24941018-24941037 MS.gene006808:CDS 45.0%
! CTGTTGCTGCTTCAGAGATA+GGG - chr4.1:24941186-24941205 MS.gene006808:intron 45.0%
! GGTACCAGAAGGTTTAGGAT+TGG - chr4.1:24941091-24941110 MS.gene006808:intron 45.0%
! TTTTCCTTCTCCTGTGACAC+TGG - chr4.1:24941703-24941722 MS.gene006808:intron 45.0%
!! ACTAGCTTTCACTGGTGTCT+TGG + chr4.1:24941069-24941088 None:intergenic 45.0%
!! AGATATGGAAGCATCCCTTC+TGG + chr4.1:24942909-24942928 None:intergenic 45.0%
!! GGGTACCGATGCTTTCTTAT+TGG - chr4.1:24942947-24942966 MS.gene006808:intron 45.0%
!!! ACCAGCTGGTCTTTTCTCTT+GGG - chr4.1:24942289-24942308 MS.gene006808:intron 45.0%
ATAACCGCCCTCTTCCAGAA+GGG - chr4.1:24942892-24942911 MS.gene006808:intron 50.0%
CACTGTTCAGAGACTCCATC+TGG - chr4.1:24942973-24942992 MS.gene006808:intron 50.0%
CTCCAGCAGTTCAAACCTTC+TGG - chr4.1:24941012-24941031 MS.gene006808:CDS 50.0%
CTCCTCATTATCACGGCTCA+TGG + chr4.1:24943015-24943034 None:intergenic 50.0%
CTGTAGTCACTCTGGCACTA+TGG + chr4.1:24942244-24942263 None:intergenic 50.0%
CTGTTCAGAGACTCCATCTG+GGG - chr4.1:24942975-24942994 MS.gene006808:intron 50.0%
CTTGGACTTTGCGGTGAAAG+TGG - chr4.1:24943487-24943506 MS.gene006808:CDS 50.0%
GAAAGGAGGCTCAAGGATCT+TGG - chr4.1:24943469-24943488 MS.gene006808:CDS 50.0%
GACACCAGTGAAAGCTAGTG+TGG - chr4.1:24941070-24941089 MS.gene006808:intron 50.0%
GTAGACGTTGCTGAGACCAA+TGG - chr4.1:24942837-24942856 MS.gene006808:intron 50.0%
GTATGTGAAGGGTCGTACAC+CGG - chr4.1:24942072-24942091 MS.gene006808:CDS 50.0%
GTTATTCCAGTGCAGGTCAG+AGG - chr4.1:24941430-24941449 MS.gene006808:CDS 50.0%
GTTCTCCTGCCTTGACAGAA+AGG + chr4.1:24942340-24942359 None:intergenic 50.0%
TACATCCATGTCCATCCGAG+GGG - chr4.1:24942433-24942452 MS.gene006808:intron 50.0%
TATAACCGCCCTCTTCCAGA+AGG - chr4.1:24942891-24942910 MS.gene006808:intron 50.0%
TCATCCAGTGTCACAGGAGA+AGG + chr4.1:24941710-24941729 None:intergenic 50.0%
TCCCAAGAGAAAAGACCAGC+TGG + chr4.1:24942293-24942312 None:intergenic 50.0%
TCTCCTGCCTTGACAGAAAG+GGG + chr4.1:24942338-24942357 None:intergenic 50.0%
TGTGTGATAACCAGCAAGGG+CGG + chr4.1:24943072-24943091 None:intergenic 50.0%
TTCTGTCAAGGCAGGAGAAC+AGG - chr4.1:24942340-24942359 MS.gene006808:intron 50.0%
! AAGCAATGCAGAGTTGGCTC+TGG - chr4.1:24942725-24942744 MS.gene006808:CDS 50.0%
! GAAGCATCCCTTCTGGAAGA+GGG + chr4.1:24942902-24942921 None:intergenic 50.0%
! GCTGTTGCTGCTTCAGAGAT+AGG - chr4.1:24941185-24941204 MS.gene006808:intron 50.0%
! GGTGAAAGTGGTGATGTCCT+TGG - chr4.1:24943499-24943518 MS.gene006808:CDS 50.0%
! TCTGAAGCAGCAACAGCATC+AGG + chr4.1:24941182-24941201 None:intergenic 50.0%
! TGCTGCTTCAGAGATAGGGA+AGG - chr4.1:24941190-24941209 MS.gene006808:intron 50.0%
!! GGTACCACACTAGCTTTCAC+TGG + chr4.1:24941077-24941096 None:intergenic 50.0%
!!! GACCAGCTGGTCTTTTCTCT+TGG - chr4.1:24942288-24942307 MS.gene006808:intron 50.0%
AAGGAGCCCCCTTTCTGTCA+AGG - chr4.1:24942328-24942347 MS.gene006808:intron 55.0%
CACCTCAAGATGACCCCAGA+TGG + chr4.1:24942991-24943010 None:intergenic 55.0%
CTCCTGCCTTGACAGAAAGG+GGG + chr4.1:24942337-24942356 None:intergenic 55.0%
CTCGGATATCCCCAGTGTCA+AGG + chr4.1:24942793-24942812 None:intergenic 55.0%
GAAAACCCCTCGGATGGACA+TGG + chr4.1:24942441-24942460 None:intergenic 55.0%
GACAGAAAGGGGGCTCCTTA+GGG + chr4.1:24942327-24942346 None:intergenic 55.0%
GCAGGATCGCAAGCTGAAAG+AGG - chr4.1:24943321-24943340 MS.gene006808:CDS 55.0%
TCCTACCGTCGAAAACCCCT+CGG + chr4.1:24942451-24942470 None:intergenic 55.0%
TGACAGAAAGGGGGCTCCTT+AGG + chr4.1:24942328-24942347 None:intergenic 55.0%
TGCAGGTGCCTAAGAGGTTG+TGG - chr4.1:24941150-24941169 MS.gene006808:intron 55.0%
! CTCCATCTGGGGTCATCTTG+AGG - chr4.1:24942986-24943005 MS.gene006808:intron 55.0%
! GCCCATGAGCCGTGATAATG+AGG - chr4.1:24943010-24943029 MS.gene006808:intron 55.0%
! TCCATCCGAGGGGTTTTCGA+CGG - chr4.1:24942443-24942462 MS.gene006808:intron 55.0%
!! GCAGAGTTGGCTCTGGACTA+TGG - chr4.1:24942732-24942751 MS.gene006808:CDS 55.0%
!! GGAAGCATCCCTTCTGGAAG+AGG + chr4.1:24942903-24942922 None:intergenic 55.0%
ACCGTCGAAAACCCCTCGGA+TGG + chr4.1:24942447-24942466 None:intergenic 60.0%
AGCCCCCTTTCTGTCAAGGC+AGG - chr4.1:24942332-24942351 MS.gene006808:intron 60.0%
GCTCTTCCTCTGACCTGCAC+TGG + chr4.1:24941439-24941458 None:intergenic 60.0%
GGGGGCTCCTTAGGGCAAAT+AGG + chr4.1:24942319-24942338 None:intergenic 60.0%
! ACCAGCAAGGGCGGATTTGC+AGG + chr4.1:24943063-24943082 None:intergenic 60.0%
! GCATCCCTTCTGGAAGAGGG+CGG + chr4.1:24942899-24942918 None:intergenic 60.0%
! TCCGAGGGGTTTTCGACGGT+AGG - chr4.1:24942447-24942466 MS.gene006808:intron 60.0%
GCCTGCAAATCCGCCCTTGC+TGG - chr4.1:24943059-24943078 MS.gene006808:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 24940858 24943543 24940858 ID=MS.gene006808
chr4.1 mRNA 24940858 24943543 24940858 ID=MS.gene006808.t1;Parent=MS.gene006808
chr4.1 exon 24943062 24943543 24943062 ID=MS.gene006808.t1.exon1;Parent=MS.gene006808.t1
chr4.1 CDS 24943062 24943543 24943062 ID=cds.MS.gene006808.t1;Parent=MS.gene006808.t1
chr4.1 exon 24942928 24942956 24942928 ID=MS.gene006808.t1.exon2;Parent=MS.gene006808.t1
chr4.1 CDS 24942928 24942956 24942928 ID=cds.MS.gene006808.t1;Parent=MS.gene006808.t1
chr4.1 exon 24942584 24942795 24942584 ID=MS.gene006808.t1.exon3;Parent=MS.gene006808.t1
chr4.1 CDS 24942584 24942795 24942584 ID=cds.MS.gene006808.t1;Parent=MS.gene006808.t1
chr4.1 exon 24942040 24942165 24942040 ID=MS.gene006808.t1.exon4;Parent=MS.gene006808.t1
chr4.1 CDS 24942040 24942165 24942040 ID=cds.MS.gene006808.t1;Parent=MS.gene006808.t1
chr4.1 exon 24941298 24941702 24941298 ID=MS.gene006808.t1.exon5;Parent=MS.gene006808.t1
chr4.1 CDS 24941298 24941702 24941298 ID=cds.MS.gene006808.t1;Parent=MS.gene006808.t1
chr4.1 exon 24940858 24941076 24940858 ID=MS.gene006808.t1.exon6;Parent=MS.gene006808.t1
chr4.1 CDS 24940858 24941076 24940858 ID=cds.MS.gene006808.t1;Parent=MS.gene006808.t1
Gene Sequence

>MS.gene006808

ATGGCTACAATCTTTTCTGGAGGTTCAGTTTCACTCTTCTCTTTTCACACAAACAAGGGTAAATCATCTTTTGCAACCAAAGGACCAACTCTTCATCTGAAGAAACCTTTCTCTGTCAAATCAGTAGCTTCACTTGGAACTGAAACATCACTGTCTCCAGCAGTTCAAACCTTCTGGAAGTGGCTACAAGAAGAAGGTGTTATCACTGCCAAGACACCAGTGAAAGCTAGTGTGGTACCAGAAGGTTTAGGATTGGTTGCACTCAAAGATATTTCTAGAAATGATGTTATTTTGCAGGTGCCTAAGAGGTTGTGGATAAATCCTGATGCTGTTGCTGCTTCAGAGATAGGGAAGGTGTGTAGTAAGTTGACACCATGGTTGTCTGTTATGTTGTTTCTTATTAGAGAAAGGTCAAGAGAGGATTCTGTTTGGAAGCATTACTTTGGTATTCTGCCACAGGAAACTGATTCTACAATATATTGGTGGGTTTCTTTTGTTTGGTTAACTACTAATATAAGATTAATGTGAAATTGAGTTCTTTTCATATGGTTGGTTGATTCAGTTGGTAATTGGTTATTCCAGTGCAGGTCAGAGGAAGAGCTCCAAGAACTTCAAGGTTAGTAGTGATGCAATGTTTGTGATACAAACCCATGTTTTCAAATATTGATTATGCAATAAAAATTTGTGCTTTGAAGTAATTTGATATGTTTCACCACATCCTGAACTTTGAATGAACTGAATTGAGTAGGTACTCAACTTCTGAACACAACACTGTCTGTGAAAGAATATGTGAAGAATGAATGTCTGAAACTGGAAAAAGAAATCATTCTCCCTAATAAGAAGCTTTTTCCTTCTCCTGTGACACTGGATGACTTCTTCTGGGCATTTGGAATTCTCAGATCAAGGGCATTTTCTCGCCTTCGCAATGAAAATCTAGTTGTGATTCCACTTGCAGACTTGGTAAGAACCTTTTCATTTCTCTTCTTCTGTATCATGCAGCTGTAGAGGAAAGAGATAAACAAACTTATAAAACTGTCTATGATATTCCCAGCGTGGACATAATTTTAGAGCCAGATCAGTTAATGTTCTTAAGTAGTATGAAGAAAATACTTAAAAGAATCTTGTAGTTATAAGTTTTTTGAACAATATTTTCTGCTACAAATTGAACTTAGGCTCTTTTGTTCAACATCTATTAGTTTACAAGGACTTCTTTTGTATGTGAAGGGTCGTACACCGGTTTTAATTGAGAAACTCTCCTAAGTTAGAAACTAATCCAAATTGAGTCTTTACTTGTTTTTCTGCTGATTTTGTCTTCTCCCATCAATATGCTTCAACAAAAAATGGAAATGACATTTTCCGAATTCAATTTCTGGATCAGATTAACCATAGTGCCAGAGTGACTACAGATGATCATGCTTATGAAGTCAAAGGACCAGCTGGTCTTTTCTCTTGGGATTACCTATTTGCCCTAAGGAGCCCCCTTTCTGTCAAGGCAGGAGAACAGGTGATTTGTTTATACCTCTTCATATGTTTCTTTTCATGCGTCATTTGTACACATCATCACAAGATAATGAATACATCCATGTCCATCCGAGGGGTTTTCGACGGTAGGAACATTTTTTTATCTAAGAAGCTTATACATGAACTAGCCAGCTCTTCCATATCAAGGAAAAAGAAGCATAATACTGCAAACCAAATGTATCAGAGCCAGAAAGTTGCAGCAGAACTTTGCAATCCAAGCTGTATTTTGAGGCGCAAAGTAGCTCTTTCATGTTGAAATTTTCATGCTTCTCAATTCTTGGTCACATTCATAACTGTGCAGTTGGTAACTTTTACTGTAGGTGTATATCCAATATGATTTAAACAAAAGCAATGCAGAGTTGGCTCTGGACTATGGTTTCATTGAACCAAATGCAGATCGATATGCATACACCTTGACACTGGGGATATCCGAGTCAGACCCTTTTTTTGACGACAAAGTAGACGTTGCTGAGACCAATGGTTTTTCTCAGACAGCATACTTTGACATCTTCTATAACCGCCCTCTTCCAGAAGGGATGCTTCCATATCTGAGATTAGTAGCACTAGGGGGTACCGATGCTTTCTTATTGGAATCACTGTTCAGAGACTCCATCTGGGGTCATCTTGAGGTGCCCATGAGCCGTGATAATGAGGAGCTAGTATGCAAAGCGGTTCGAGATGCCTGCAAATCCGCCCTTGCTGGTTATCACACAACCATTGAACAGGTAATAAACTATACATTCAGGGTTCCAACATGATGGTAATGAGAATAATATTAAAACTTCTCGTGTCTATATATTTCATTACATTTACAAGTTTTTATATGTATGACTAATACATTTGAAGTAACCTCATTGCATTTTACGTAGTACATGGGCTTCAAATTGTGAAAACTTTGAAGCTGATTGAGATCAACATATAACTGAACAAAGCATGCAAATTGCAGGATCGCAAGCTGAAAGAGGCAAATCTAGATTCAAGGCTTGCAATAGCAGTCGGAATAAGAGAAGGGGAAAAAATGATCCTGCAGCAAATTGATGAGATCTTCGAGCAGAAAGAATTGGAACTAGACCAGTTGGAATATTATCAAGAAAGGAGGCTCAAGGATCTTGGACTTTGCGGTGAAAGTGGTGATGTCCTTGGAGACCTTGCAAAATACTTCTAA

Protein sequence

>MS.gene006808.t1

MATIFSGGSVSLFSFHTNKGKSSFATKGPTLHLKKPFSVKSVASLGTETSLSPAVQTFWKWLQEEGVITAKTPVKASVVPEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGKVCSKLTPWLSVMLFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGTQLLNTTLSVKEYVKNECLKLEKEIILPNKKLFPSPVTLDDFFWAFGILRSRAFSRLRNENLVVIPLADLINHSARVTTDDHAYEVKGPAGLFSWDYLFALRSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNADRYAYTLTLGISESDPFFDDKVDVAETNGFSQTAYFDIFYNRPLPEGMLPYLRLVALGGTDAFLLESLFRDSIWGHLEVPMSRDNEELVCKAVRDACKSALAGYHTTIEQDRKLKEANLDSRLAIAVGIREGEKMILQQIDEIFEQKELELDQLEYYQERRLKDLGLCGESGDVLGDLAKYF