AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006949

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006949.t1 MTR_4g084740 93.913 230 14 0 1 230 1 230 9.57e-158 440
MS.gene006949.t1 MTR_5g061740 77.922 231 34 2 1 230 1 215 3.05e-128 365
MS.gene006949.t1 MTR_3g102570 40.435 230 117 5 1 229 1 211 3.20e-49 164
MS.gene006949.t1 MTR_5g041650 35.938 192 108 4 1 191 38 215 7.01e-30 115
MS.gene006949.t1 MTR_4g108720 33.624 229 125 6 1 217 1 214 1.48e-28 110
MS.gene006949.t1 MTR_3g005530 34.054 185 83 2 1 185 1 146 5.97e-25 98.2
MS.gene006949.t1 MTR_7g075870 32.804 189 89 3 1 189 1 151 5.94e-24 95.5
MS.gene006949.t1 MTR_7g016630 31.122 196 95 2 1 196 1 156 1.64e-23 95.1
MS.gene006949.t1 MTR_7g075850 33.871 186 83 3 1 185 1 147 1.66e-23 95.1
MS.gene006949.t1 MTR_5g046870 55.714 70 31 0 1 70 1 70 2.90e-23 90.9
MS.gene006949.t1 MTR_3g452380 32.973 185 85 3 1 185 16 161 1.38e-22 92.4
MS.gene006949.t1 MTR_7g075870 32.804 189 88 4 1 189 1 150 1.94e-22 91.3
MS.gene006949.t1 MTR_7g016600 57.143 70 30 0 1 70 1 70 2.55e-22 92.0
MS.gene006949.t1 MTR_2g017865 58.571 70 28 1 1 70 16 84 2.96e-22 92.0
MS.gene006949.t1 MTR_8g097090 57.143 70 30 0 1 70 1 70 4.31e-22 91.3
MS.gene006949.t1 MTR_8g033270 32.086 187 84 3 1 185 1 146 6.27e-22 90.9
MS.gene006949.t1 MTR_3g084980 57.143 70 30 0 1 70 1 70 9.66e-22 90.5
MS.gene006949.t1 MTR_6g015975 57.143 70 30 0 1 70 1 70 1.50e-21 90.1
MS.gene006949.t1 MTR_8g087860 67.241 58 19 0 1 58 17 74 1.90e-21 89.7
MS.gene006949.t1 MTR_4g109810 57.143 70 30 0 1 70 1 70 2.03e-21 89.4
MS.gene006949.t1 MTR_4g109830 36.364 176 95 6 1 172 1 163 2.20e-21 89.0
MS.gene006949.t1 MTR_2g009890 34.392 189 84 4 1 189 1 149 3.03e-21 89.7
MS.gene006949.t1 MTR_5g046790 30.526 190 94 2 1 190 1 152 6.03e-21 87.4
MS.gene006949.t1 MTR_8g033220 53.165 79 32 1 1 74 1 79 1.48e-20 86.7
MS.gene006949.t1 MTR_1g053070 56.944 72 30 1 1 72 1 71 1.49e-20 87.4
MS.gene006949.t1 MTR_1g038300 27.660 235 139 8 1 229 1 210 1.49e-20 87.0
MS.gene006949.t1 MTR_8g033220 53.165 79 32 1 1 74 1 79 1.51e-20 87.0
MS.gene006949.t1 MTR_8g066260 50.000 78 39 0 1 78 1 78 1.80e-20 87.0
MS.gene006949.t1 MTR_3g088615 54.930 71 31 1 1 70 1 71 2.14e-20 85.1
MS.gene006949.t1 MTR_0003s0590 51.163 86 37 2 1 84 1 83 3.83e-20 86.3
MS.gene006949.t1 MTR_5g021270 64.912 57 20 0 1 57 1 57 1.03e-19 84.7
MS.gene006949.t1 MTR_5g021270 64.912 57 20 0 1 57 1 57 1.08e-19 84.7
MS.gene006949.t1 MTR_4g102530 57.143 70 29 1 1 70 1 69 1.22e-19 84.0
MS.gene006949.t1 MTR_5g031000 33.333 189 85 4 1 189 1 148 1.62e-19 84.0
MS.gene006949.t1 MTR_6g464720 51.429 70 34 0 1 70 1 70 2.40e-19 84.0
MS.gene006949.t1 MTR_5g031000 33.333 189 85 4 1 189 1 148 2.44e-19 84.0
MS.gene006949.t1 MTR_3g113030 63.158 57 21 0 1 57 1 57 3.36e-19 83.2
MS.gene006949.t1 MTR_5g032520 33.702 181 81 4 1 181 1 142 7.40e-19 82.4
MS.gene006949.t1 MTR_5g045560 38.211 123 62 3 1 123 8 116 9.99e-19 82.0
MS.gene006949.t1 MTR_4g093030 52.857 70 33 0 1 70 1 70 1.64e-18 79.7
MS.gene006949.t1 MTR_4g036050 29.108 213 108 6 1 213 1 170 2.70e-18 79.7
MS.gene006949.t1 MTR_5g032150 62.069 58 22 0 1 58 1 58 3.16e-18 80.5
MS.gene006949.t1 MTR_8g086290 50.704 71 34 1 2 72 12 81 3.74e-18 79.3
MS.gene006949.t1 MTR_2g461710 56.897 58 25 0 1 58 1 58 4.18e-18 75.9
MS.gene006949.t1 MTR_4g036050 42.169 83 48 0 1 83 1 83 5.81e-18 79.0
MS.gene006949.t1 MTR_4g036050 42.169 83 48 0 1 83 1 83 6.25e-18 79.0
MS.gene006949.t1 MTR_1g101970 58.621 58 24 0 1 58 1 58 6.94e-18 79.0
MS.gene006949.t1 MTR_1g029670 50.704 71 34 1 1 70 1 71 7.45e-18 78.6
MS.gene006949.t1 MTR_4g036050 42.169 83 48 0 1 83 1 83 8.11e-18 79.0
MS.gene006949.t1 MTR_5g066960 54.098 61 28 0 1 61 1 61 1.02e-17 74.7
MS.gene006949.t1 MTR_5g066180 48.571 70 35 1 1 70 1 69 1.60e-17 78.6
MS.gene006949.t1 MTR_1g108580 43.529 85 47 1 2 86 9 92 1.81e-17 78.6
MS.gene006949.t1 MTR_8g043650 29.208 202 108 6 2 202 9 176 2.22e-17 78.6
MS.gene006949.t1 MTR_8g051580 31.707 164 78 4 1 164 1 130 2.52e-17 77.0
MS.gene006949.t1 MTR_3g052920 51.316 76 35 2 2 76 9 83 2.76e-17 78.2
MS.gene006949.t1 MTR_2g085280 46.154 91 47 2 2 92 9 97 3.51e-17 77.8
MS.gene006949.t1 MTR_2g085250 46.154 91 47 2 2 92 9 97 3.62e-17 77.8
MS.gene006949.t1 MTR_1g105910 47.368 76 38 2 2 76 9 83 9.27e-17 76.6
MS.gene006949.t1 MTR_2g030740 48.684 76 37 2 2 76 9 83 1.11e-16 76.6
MS.gene006949.t1 MTR_1g108510 48.684 76 37 2 2 76 9 83 1.27e-16 76.3
MS.gene006949.t1 MTR_3g052870 47.368 76 38 2 2 76 9 83 1.63e-16 75.9
MS.gene006949.t1 MTR_3g030770 48.684 76 37 2 2 76 9 83 1.84e-16 75.9
MS.gene006949.t1 MTR_2g105290 50.704 71 34 1 1 71 11 80 1.92e-16 74.7
MS.gene006949.t1 MTR_1g105920 47.368 76 38 2 2 76 9 83 1.95e-16 75.9
MS.gene006949.t1 MTR_1g054265 46.575 73 38 1 1 73 1 72 2.41e-16 74.3
MS.gene006949.t1 MTR_1g077360 50.000 76 36 2 2 76 9 83 2.84e-16 75.5
MS.gene006949.t1 MTR_1g041615 52.941 68 29 1 13 77 17 84 2.94e-16 73.2
MS.gene006949.t1 MTR_7g028448 35.385 130 77 3 16 145 26 148 3.96e-16 73.6
MS.gene006949.t1 MTR_4g036915 35.385 130 77 3 16 145 26 148 3.96e-16 73.6
MS.gene006949.t1 MTR_4g131030 52.113 71 33 1 1 71 1 70 4.99e-16 74.3
MS.gene006949.t1 MTR_1g106070 41.176 85 49 1 2 86 9 92 5.02e-16 73.6
MS.gene006949.t1 MTR_4g093970 55.932 59 26 0 1 59 27 85 8.96e-16 74.3
MS.gene006949.t1 MTR_2g093190 42.353 85 48 1 2 86 9 92 9.10e-16 73.9
MS.gene006949.t1 MTR_1g012570 47.887 71 36 1 2 72 9 78 1.12e-15 73.9
MS.gene006949.t1 MTR_1g075600 50.000 76 36 2 2 76 9 83 1.27e-15 73.6
MS.gene006949.t1 MTR_5g055100 49.367 79 38 2 2 79 9 86 1.84e-15 73.2
MS.gene006949.t1 MTR_8g079502 47.887 71 36 1 1 71 1 70 2.64e-15 71.6
MS.gene006949.t1 MTR_3g030780 41.111 90 49 4 2 90 9 95 2.83e-15 70.5
MS.gene006949.t1 MTR_1g063160 46.575 73 38 1 1 73 1 72 3.88e-15 71.2
MS.gene006949.t1 MTR_3g080940 44.444 72 39 1 1 72 8 78 5.11e-15 71.6
MS.gene006949.t1 MTR_1g047550 47.887 71 36 1 1 71 1 70 6.42e-15 70.5
MS.gene006949.t1 MTR_0121s0100 40.000 85 50 1 2 86 9 92 8.88e-15 68.9
MS.gene006949.t1 MTR_0121s0080 46.053 76 39 2 2 76 9 83 1.69e-14 70.5
MS.gene006949.t1 MTR_5g053390 47.887 71 36 1 2 72 9 78 1.92e-14 70.5
MS.gene006949.t1 MTR_8g046350 43.662 71 39 1 1 71 1 70 1.46e-13 66.6
MS.gene006949.t1 MTR_4g127140 35.556 135 81 3 1 130 11 144 1.69e-13 67.0
MS.gene006949.t1 MTR_4g094632 43.056 72 40 1 1 72 1 71 1.82e-12 63.5
MS.gene006949.t1 MTR_1g105905 35.849 106 62 3 11 113 1 103 5.81e-12 63.2
MS.gene006949.t1 MTR_4g094638 42.466 73 39 2 1 72 1 71 1.19e-11 61.6
MS.gene006949.t1 MTR_6g018920 34.118 85 49 1 1 78 1 85 1.22e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006949.t1 AT1G22130 61.572 229 84 2 1 225 1 229 3.75e-97 287
MS.gene006949.t1 AT1G77980 62.069 232 81 3 1 225 1 232 7.79e-96 283
MS.gene006949.t1 AT1G77950 62.567 187 68 1 1 185 1 187 1.63e-81 244
MS.gene006949.t1 AT1G77950 62.567 187 68 1 1 185 1 187 1.63e-81 244
MS.gene006949.t1 AT1G77950 62.567 187 68 1 1 185 1 187 1.63e-81 244
MS.gene006949.t1 AT1G77950 62.567 187 68 1 1 185 1 187 1.63e-81 244
MS.gene006949.t1 AT1G18750 34.052 232 124 7 1 217 1 218 6.23e-30 115
MS.gene006949.t1 AT1G18750 36.842 190 105 5 1 189 1 176 6.96e-30 114
MS.gene006949.t1 AT2G03060 36.216 185 103 4 1 184 1 171 4.01e-28 110
MS.gene006949.t1 AT2G03060 36.216 185 103 4 1 184 1 171 4.01e-28 110
MS.gene006949.t1 AT2G03060 36.216 185 103 4 1 184 1 171 4.01e-28 110
MS.gene006949.t1 AT2G03060 36.216 185 103 4 1 184 1 171 4.46e-28 110
MS.gene006949.t1 AT1G18750 47.414 116 48 3 1 115 1 104 4.51e-27 107
MS.gene006949.t1 AT4G37435 34.359 195 107 4 1 191 1 178 8.28e-27 102
MS.gene006949.t1 AT1G69540 33.696 184 109 3 1 184 1 171 2.64e-25 102
MS.gene006949.t1 AT1G69540 33.696 184 109 3 1 184 1 171 2.71e-25 101
MS.gene006949.t1 AT4G09960 33.871 186 82 3 1 185 2 147 8.18e-25 98.2
MS.gene006949.t1 AT4G09960 33.871 186 82 3 1 185 1 146 8.89e-25 98.2
MS.gene006949.t1 AT4G09960 34.043 188 83 3 1 187 1 148 1.06e-24 97.4
MS.gene006949.t1 AT4G09960 33.871 186 82 3 1 185 11 156 1.62e-24 97.8
MS.gene006949.t1 AT4G09960 33.871 186 82 3 1 185 27 172 3.21e-24 97.4
MS.gene006949.t1 AT4G09960 33.871 186 82 3 1 185 96 241 1.53e-23 96.7
MS.gene006949.t1 AT1G26310 32.632 190 92 3 1 190 1 154 3.69e-23 94.4
MS.gene006949.t1 AT5G13790 35.417 192 75 4 1 189 1 146 5.30e-23 94.4
MS.gene006949.t1 AT2G45650 61.429 70 26 1 1 70 1 69 1.05e-22 93.2
MS.gene006949.t1 AT5G62165 32.632 190 87 4 1 189 1 150 1.25e-22 90.5
MS.gene006949.t1 AT5G62165 32.632 190 87 4 1 189 1 150 1.25e-22 90.5
MS.gene006949.t1 AT5G62165 32.632 190 87 4 1 189 1 150 1.25e-22 90.5
MS.gene006949.t1 AT5G13790 34.921 189 77 3 1 189 1 143 1.46e-22 93.2
MS.gene006949.t1 AT1G24260 35.393 178 98 6 1 173 1 166 1.87e-22 92.4
MS.gene006949.t1 AT1G24260 35.196 179 98 6 1 173 1 167 2.45e-22 92.0
MS.gene006949.t1 AT4G18960 33.514 185 82 3 2 185 18 162 3.74e-22 91.7
MS.gene006949.t1 AT5G62165 32.663 199 92 5 1 197 1 159 3.81e-22 90.5
MS.gene006949.t1 AT5G62165 32.663 199 92 5 1 197 1 159 3.81e-22 90.5
MS.gene006949.t1 AT3G58780 31.892 185 87 3 1 185 22 167 5.19e-22 91.3
MS.gene006949.t1 AT5G62165 32.105 190 88 4 1 189 1 150 5.37e-22 88.6
MS.gene006949.t1 AT5G62165 32.105 190 88 4 1 189 1 150 5.37e-22 88.6
MS.gene006949.t1 AT5G62165 32.105 190 88 4 1 189 1 150 5.37e-22 88.6
MS.gene006949.t1 AT5G62165 32.105 190 88 4 1 189 1 150 5.37e-22 88.6
MS.gene006949.t1 AT5G62165 32.105 190 88 4 1 189 1 150 5.37e-22 88.6
MS.gene006949.t1 AT5G51870 32.979 188 88 4 1 188 1 150 5.50e-22 89.4
MS.gene006949.t1 AT3G58780 31.892 185 87 3 1 185 16 161 5.84e-22 90.9
MS.gene006949.t1 AT4G11880 58.571 70 29 0 1 70 1 70 6.04e-22 89.4
MS.gene006949.t1 AT4G11880 58.571 70 29 0 1 70 1 70 6.04e-22 89.4
MS.gene006949.t1 AT5G15800 34.973 183 90 5 1 173 1 164 6.11e-22 90.9
MS.gene006949.t1 AT1G69120 31.892 185 88 3 1 185 1 147 6.31e-22 90.5
MS.gene006949.t1 AT3G58780 63.934 61 22 0 1 61 16 76 6.85e-22 90.9
MS.gene006949.t1 AT3G58780 32.432 185 111 3 1 185 16 186 7.44e-22 91.3
MS.gene006949.t1 AT5G15800 34.973 183 90 5 1 173 1 164 8.77e-22 90.9
MS.gene006949.t1 AT1G69120 31.892 185 88 2 1 185 1 147 9.92e-22 90.5
MS.gene006949.t1 AT5G62165 32.632 190 87 4 1 189 1 150 1.01e-21 89.7
MS.gene006949.t1 AT5G62165 32.632 190 87 4 1 189 1 150 1.01e-21 89.7
MS.gene006949.t1 AT5G62165 32.632 190 87 4 1 189 1 150 1.01e-21 89.7
MS.gene006949.t1 AT1G24260 31.579 190 95 3 1 190 1 155 1.16e-21 90.1
MS.gene006949.t1 AT5G51870 32.804 189 89 4 1 189 1 151 1.29e-21 89.4
MS.gene006949.t1 AT4G11880 58.571 70 29 0 1 70 1 70 1.37e-21 89.4
MS.gene006949.t1 AT4G11880 58.571 70 29 0 1 70 1 70 1.37e-21 89.4
MS.gene006949.t1 AT5G51870 32.979 188 88 4 1 188 24 173 1.51e-21 88.6
MS.gene006949.t1 AT4G22950 31.892 185 86 2 1 185 1 145 1.63e-21 88.2
MS.gene006949.t1 AT2G42830 31.351 185 88 3 1 185 16 161 2.49e-21 89.4
MS.gene006949.t1 AT3G57390 34.921 189 91 5 1 189 1 157 2.57e-21 89.0
MS.gene006949.t1 AT2G42830 57.143 70 29 1 1 70 16 84 2.86e-21 89.4
MS.gene006949.t1 AT5G51870 32.804 189 89 4 1 189 1 151 3.03e-21 88.6
MS.gene006949.t1 AT3G61120 32.447 188 80 3 1 185 1 144 3.48e-21 89.0
MS.gene006949.t1 AT2G03710 64.407 59 21 0 1 59 1 59 3.52e-21 87.4
MS.gene006949.t1 AT3G02310 55.714 70 31 0 1 70 1 70 3.97e-21 87.8
MS.gene006949.t1 AT3G02310 55.714 70 31 0 1 70 1 70 4.09e-21 89.0
MS.gene006949.t1 AT5G60910 54.286 70 32 0 1 70 1 70 4.22e-21 88.6
MS.gene006949.t1 AT5G51870 32.804 189 89 4 1 189 11 161 4.27e-21 88.2
MS.gene006949.t1 AT3G57390 34.921 189 91 5 1 189 1 157 4.31e-21 89.0
MS.gene006949.t1 AT2G45660 53.521 71 32 1 1 71 1 70 4.49e-21 86.7
MS.gene006949.t1 AT4G22950 31.892 185 86 2 1 185 1 145 5.05e-21 87.8
MS.gene006949.t1 AT4G22950 31.892 185 86 2 1 185 1 145 5.05e-21 87.8
MS.gene006949.t1 AT3G58780 57.143 70 29 1 1 70 16 84 5.91e-21 89.0
MS.gene006949.t1 AT3G30260 52.857 70 33 0 1 70 1 70 6.60e-21 88.2
MS.gene006949.t1 AT5G10140 58.571 70 29 0 1 70 1 70 6.89e-21 86.3
MS.gene006949.t1 AT5G10140 58.571 70 29 0 1 70 1 70 8.10e-21 86.7
MS.gene006949.t1 AT2G03710 60.870 69 23 1 1 65 1 69 8.12e-21 88.2
MS.gene006949.t1 AT5G10140 58.571 70 29 0 1 70 1 70 8.97e-21 86.7
MS.gene006949.t1 AT2G03710 60.870 69 23 1 1 65 1 69 9.04e-21 88.2
MS.gene006949.t1 AT3G54340 44.545 110 54 2 1 109 1 104 9.88e-21 87.4
MS.gene006949.t1 AT5G10140 58.571 70 29 0 1 70 1 70 1.07e-20 86.3
MS.gene006949.t1 AT2G45660 53.521 71 32 1 1 71 1 70 1.07e-20 87.0
MS.gene006949.t1 AT5G23260 31.633 196 89 4 1 192 1 155 1.13e-20 87.4
MS.gene006949.t1 AT5G23260 32.620 187 84 3 1 186 17 162 1.57e-20 87.4
MS.gene006949.t1 AT3G57230 32.973 185 84 3 1 185 1 145 2.42e-20 86.7
MS.gene006949.t1 AT3G57230 32.973 185 84 3 1 185 1 145 2.42e-20 86.7
MS.gene006949.t1 AT3G57230 55.714 70 30 1 1 70 1 69 2.98e-20 84.0
MS.gene006949.t1 AT5G23260 31.771 192 89 4 1 191 1 151 5.26e-20 85.9
MS.gene006949.t1 AT5G23260 31.250 192 90 3 1 191 17 167 7.41e-20 85.9
MS.gene006949.t1 AT5G65070 55.714 70 31 0 1 70 1 70 7.42e-20 82.8
MS.gene006949.t1 AT5G65070 55.714 70 31 0 1 70 1 70 8.07e-20 84.3
MS.gene006949.t1 AT5G62165 63.793 58 21 0 1 58 1 58 1.09e-19 81.3
MS.gene006949.t1 AT1G71692 44.444 81 45 0 1 81 1 81 2.32e-19 83.2
MS.gene006949.t1 AT4G24540 31.980 197 87 4 1 193 1 154 2.57e-19 83.6
MS.gene006949.t1 AT5G65070 55.714 70 31 0 1 70 1 70 2.65e-19 83.6
MS.gene006949.t1 AT5G65070 55.714 70 31 0 1 70 1 70 2.66e-19 83.2
MS.gene006949.t1 AT5G65070 59.155 71 28 1 1 70 1 71 2.67e-19 83.6
MS.gene006949.t1 AT4G37940 34.054 185 82 4 1 185 1 145 4.42e-19 82.8
MS.gene006949.t1 AT1G31140 39.815 108 64 1 1 107 1 108 2.84e-18 80.5
MS.gene006949.t1 AT2G14210 44.156 77 43 0 1 77 1 77 4.03e-18 80.5
MS.gene006949.t1 AT5G65050 36.250 160 86 5 1 149 1 155 4.46e-18 79.3
MS.gene006949.t1 AT2G14210 44.156 77 43 0 1 77 1 77 5.52e-18 80.1
MS.gene006949.t1 AT4G37940 31.472 197 91 5 1 197 1 153 1.01e-17 78.2
MS.gene006949.t1 AT5G51860 32.418 182 111 5 1 178 1 174 1.14e-17 79.0
MS.gene006949.t1 AT5G51860 33.333 174 104 5 1 170 1 166 1.20e-17 78.6
MS.gene006949.t1 AT2G22540 29.767 215 109 5 1 215 1 173 1.27e-17 79.3
MS.gene006949.t1 AT2G22540 29.767 215 109 5 1 215 1 173 1.27e-17 79.3
MS.gene006949.t1 AT4G37940 32.258 186 86 4 1 186 1 146 1.37e-17 78.6
MS.gene006949.t1 AT1G31140 39.815 108 62 2 1 107 1 106 1.46e-17 78.6
MS.gene006949.t1 AT5G65050 52.857 70 33 0 1 70 1 70 1.61e-17 77.8
MS.gene006949.t1 AT2G22630 30.688 189 91 4 1 189 1 149 2.05e-17 78.6
MS.gene006949.t1 AT2G22630 30.688 189 91 4 1 189 1 149 2.05e-17 78.6
MS.gene006949.t1 AT5G20240 61.111 54 21 0 1 54 1 54 2.43e-17 76.3
MS.gene006949.t1 AT5G65050 52.857 70 33 0 1 70 1 70 3.92e-17 77.0
MS.gene006949.t1 AT5G65050 52.857 70 33 0 1 70 1 70 4.12e-17 76.6
MS.gene006949.t1 AT5G20240 61.111 54 21 0 1 54 1 54 5.40e-17 77.0
MS.gene006949.t1 AT2G22540 59.259 54 22 0 1 54 1 54 1.96e-16 75.9
MS.gene006949.t1 AT5G65060 51.429 70 34 0 1 70 1 70 5.47e-16 73.6
MS.gene006949.t1 AT5G65060 51.429 70 34 0 1 70 1 70 5.91e-16 73.9
MS.gene006949.t1 AT5G65060 51.429 70 34 0 1 70 1 70 8.36e-16 73.2
MS.gene006949.t1 AT5G65080 47.143 70 37 0 1 70 8 77 2.09e-15 72.4
MS.gene006949.t1 AT5G65080 56.452 62 26 1 1 61 8 69 1.31e-14 70.5
MS.gene006949.t1 AT2G26320 43.750 80 44 1 1 79 17 96 2.13e-14 67.4
MS.gene006949.t1 AT5G60440 41.463 82 44 2 2 80 7 87 2.31e-14 71.2
MS.gene006949.t1 AT2G24840 45.833 72 38 1 1 72 62 132 1.06e-13 68.9
MS.gene006949.t1 AT1G47760 53.846 52 24 0 1 52 1 52 1.07e-13 67.4
MS.gene006949.t1 AT3G66656 41.667 72 41 1 1 72 1 71 1.36e-13 67.0
MS.gene006949.t1 AT1G77080 54.286 70 32 0 1 70 1 70 1.72e-13 66.6
MS.gene006949.t1 AT1G01530 41.573 89 43 2 1 86 6 88 1.99e-13 67.8
MS.gene006949.t1 AT1G77080 54.286 70 32 0 1 70 1 70 2.04e-13 66.6
MS.gene006949.t1 AT1G77080 54.286 70 32 0 1 70 1 70 2.69e-13 66.6
MS.gene006949.t1 AT1G77080 54.286 70 32 0 1 70 1 70 6.56e-13 66.2
MS.gene006949.t1 AT1G77080 75.000 40 10 0 1 40 1 40 8.68e-13 64.3
MS.gene006949.t1 AT4G36590 46.479 71 37 1 2 72 7 76 1.51e-12 65.5
MS.gene006949.t1 AT1G77080 75.000 40 10 0 1 40 1 40 1.53e-12 64.3
MS.gene006949.t1 AT2G34440 39.437 71 42 1 1 71 1 70 2.64e-12 63.5
MS.gene006949.t1 AT1G72350 54.386 57 26 0 2 58 43 99 3.98e-12 63.9

Find 38 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATAGATGTCATCTTTAA+TGG 0.172713 4.4:+27950455 None:intergenic
GAACATACTTATCTCTTTCT+TGG 0.254516 4.4:+27951652 None:intergenic
GTATGATCCATCAGCTATTC+AGG 0.315118 4.4:-27950213 MS.gene006949:intron
AAATGGTAGAGGAGCAAATA+AGG 0.337725 4.4:-27950602 MS.gene006949:intron
AAATGATTAAGACGATTTGA+TGG 0.363568 4.4:+27952250 None:intergenic
TACTTATCTCTTTCTTGGTC+AGG 0.364285 4.4:+27951657 None:intergenic
GTAATCTACTAACTTCTTGT+TGG 0.390980 4.4:+27950637 None:intergenic
CTATAGATGTCATCTTTAAT+GGG 0.404310 4.4:+27950456 None:intergenic
GATGTCATCTTTAATGGGTC+GGG 0.420679 4.4:+27950461 None:intergenic
TTACGAACTTGGACATATGA+AGG 0.447873 4.4:+27950955 None:intergenic
ACATATTCAAAACGTAGAAA+TGG 0.460629 4.4:-27952340 MS.gene006949:CDS
AGAAACCTTGGCACGTGTCA+TGG 0.475032 4.4:-27950402 MS.gene006949:CDS
ATTACAACAACAACTTCAAA+TGG 0.479837 4.4:-27950619 MS.gene006949:CDS
GGCACGTGTCATGGAGAGAA+AGG 0.482362 4.4:-27950393 MS.gene006949:intron
TACCTTCGGTAGGGTAGCTC+AGG 0.489363 4.4:+27951511 None:intergenic
CATCTCCTATGGATCCTCTC+AGG 0.491750 4.4:-27948931 None:intergenic
AGATGTCATCTTTAATGGGT+CGG 0.506566 4.4:+27950460 None:intergenic
TCTATAGCAGAGCTTGAAAC+CGG 0.508243 4.4:-27950440 MS.gene006949:CDS
TTAATTACCTGAATAGCTGA+TGG 0.509027 4.4:+27950206 None:intergenic
CCTCTTTCGAGAATGTTAGT+TGG 0.510880 4.4:-27948997 MS.gene006949:CDS
TCTCTCCATGACACGTGCCA+AGG 0.532693 4.4:+27950397 None:intergenic
TCAGGGTACTTCAGCAGTTG+AGG 0.541962 4.4:-27950995 MS.gene006949:CDS
CCAACTAACATTCTCGAAAG+AGG 0.545727 4.4:+27948997 None:intergenic
TGAAACCTGAGAGGATCCAT+AGG 0.553014 4.4:+27948926 None:intergenic
AGACATGAACTCTGAGGTTG+AGG 0.553786 4.4:-27950800 MS.gene006949:intron
TTGCAGGGGTATTCAGAGCA+AGG 0.557352 4.4:-27951298 MS.gene006949:intron
TACGAACTTGGACATATGAA+GGG 0.559614 4.4:+27950956 None:intergenic
TCTGAGAGTATACCTTCGGT+AGG 0.566583 4.4:+27951501 None:intergenic
ACAACAACTTCAAATGGTAG+AGG 0.593286 4.4:-27950613 MS.gene006949:CDS
CTGAGAGTATACCTTCGGTA+GGG 0.605428 4.4:+27951502 None:intergenic
TTCCTGAGCTACCCTACCGA+AGG 0.607215 4.4:-27951513 MS.gene006949:intron
CTAACATTCTCGAAAGAGGT+CGG 0.649958 4.4:+27949001 None:intergenic
AATGTTAGTTGGCTGCAAGA+TGG 0.658329 4.4:-27948986 MS.gene006949:CDS
GTTAGTTGGCTGCAAGATGG+TGG 0.663132 4.4:-27948983 MS.gene006949:CDS
GAGCAATATCAATATCACAA+AGG 0.664332 4.4:+27952287 None:intergenic
TCAATAAATTGAAACCTGAG+AGG 0.671393 4.4:+27948917 None:intergenic
CAGGGGTATTCAGAGCAAGG+AGG 0.704327 4.4:-27951295 MS.gene006949:intron
TTCGGGAGACATGAACTCTG+AGG 0.722763 4.4:-27950806 MS.gene006949:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATAATTAAAATATTT+TGG + chr4.4:27950800-27950819 None:intergenic 0.0%
!! AAATTAATTCACTTTATAAT+TGG + chr4.4:27949471-27949490 None:intergenic 10.0%
!! AATCATTATTATATTATGTA+TGG + chr4.4:27951938-27951957 None:intergenic 10.0%
!! ATTACTTTATATTAGAATTT+AGG - chr4.4:27950425-27950444 MS.gene006949:CDS 10.0%
!! TATTTATTTATTTATTTGCA+GGG - chr4.4:27950016-27950035 MS.gene006949:intron 10.0%
!! TTATTTATTTATTTATTTGC+AGG - chr4.4:27950015-27950034 MS.gene006949:intron 10.0%
!!! CTTCATTTTTTTTATTTTTT+GGG - chr4.4:27950993-27951012 MS.gene006949:CDS 10.0%
!!! TCTTCATTTTTTTTATTTTT+TGG - chr4.4:27950992-27951011 MS.gene006949:CDS 10.0%
!!! TTACATAATATAATTTTGAA+GGG + chr4.4:27950608-27950627 None:intergenic 10.0%
!!! TTCATTTTTTTTATTTTTTG+GGG - chr4.4:27950994-27951013 MS.gene006949:CDS 10.0%
!!! TTGATAGTTTATTTATATAT+GGG - chr4.4:27951024-27951043 MS.gene006949:intron 10.0%
!!! TTTGATAGTTTATTTATATA+TGG - chr4.4:27951023-27951042 MS.gene006949:intron 10.0%
!!! TTTTTTTTTTTTTGTAGTAT+TGG - chr4.4:27952232-27952251 MS.gene006949:intron 10.0%
!! AAAGTTATTATACACATTAT+TGG - chr4.4:27950162-27950181 MS.gene006949:intron 15.0%
!! AATAAAGTTATTATACACTA+TGG + chr4.4:27949556-27949575 None:intergenic 15.0%
!! ATGTTATGTAATTAAATGTT+TGG - chr4.4:27952144-27952163 MS.gene006949:intron 15.0%
!! ATTTATTTATTTATTTGCAG+GGG - chr4.4:27950017-27950036 MS.gene006949:intron 15.0%
!! CTTTATAAATGCTATTAATT+CGG + chr4.4:27951893-27951912 None:intergenic 15.0%
!! TATATTACGAATTAGAATTT+CGG - chr4.4:27951315-27951334 MS.gene006949:intron 15.0%
!! TTTACAAACTATATATGTAT+TGG - chr4.4:27949157-27949176 MS.gene006949:intron 15.0%
!!! GTTACATAATATAATTTTGA+AGG + chr4.4:27950609-27950628 None:intergenic 15.0%
!! AAAAATTGTTCTAATGTTTG+GGG - chr4.4:27950822-27950841 MS.gene006949:intron 20.0%
!! AAAATATAACAACATCACTA+TGG + chr4.4:27949606-27949625 None:intergenic 20.0%
!! AAAATCTATCAAAAACAATC+AGG + chr4.4:27949230-27949249 None:intergenic 20.0%
!! AAACAATTAAGAAATGAAGA+AGG + chr4.4:27949894-27949913 None:intergenic 20.0%
!! AAATATAACAACATCACTAT+GGG + chr4.4:27949605-27949624 None:intergenic 20.0%
!! ACTTTCAGTTTGTAAAAAAT+TGG - chr4.4:27951261-27951280 MS.gene006949:intron 20.0%
!! AGAGAAATTTGAGAAATTAA+AGG - chr4.4:27951408-27951427 MS.gene006949:intron 20.0%
!! ATATTACGAATTAGAATTTC+GGG - chr4.4:27951316-27951335 MS.gene006949:intron 20.0%
!! ATGTGACAAAGATTAATTAA+AGG + chr4.4:27950103-27950122 None:intergenic 20.0%
!! CAAAAATTGTTCTAATGTTT+GGG - chr4.4:27950821-27950840 MS.gene006949:intron 20.0%
!! CTTTCAGTTTGTAAAAAATT+GGG - chr4.4:27951262-27951281 MS.gene006949:intron 20.0%
!! GTATAATAACTTTATACTGA+CGG + chr4.4:27950155-27950174 None:intergenic 20.0%
!! TAGGAAAAATGTAGAAATTA+TGG - chr4.4:27951552-27951571 MS.gene006949:intron 20.0%
!! TCAAAAATTGTTCTAATGTT+TGG - chr4.4:27950820-27950839 MS.gene006949:intron 20.0%
!! TTATTACAAAGAGATACAAA+AGG + chr4.4:27951614-27951633 None:intergenic 20.0%
!! TTGAATAAAACCTATAGATT+AGG - chr4.4:27949438-27949457 MS.gene006949:intron 20.0%
!! TTGTAATAATTCATTGATAG+TGG - chr4.4:27951625-27951644 MS.gene006949:intron 20.0%
!! TTTATTCCTAGATTAAATCT+AGG - chr4.4:27951769-27951788 MS.gene006949:intron 20.0%
!!! CATTTATGTTTTAGATACAA+TGG - chr4.4:27949303-27949322 MS.gene006949:intron 20.0%
!!! TATTCTTTTCTTTTCTTCTA+TGG - chr4.4:27949384-27949403 MS.gene006949:intron 20.0%
! AAAACATGCATGTTTATTCA+TGG - chr4.4:27951058-27951077 MS.gene006949:intron 25.0%
! AAAAGTAGTAACTAATGTCA+AGG + chr4.4:27951827-27951846 None:intergenic 25.0%
! AAAATCACAAAATTCATGAC+AGG - chr4.4:27952300-27952319 MS.gene006949:CDS 25.0%
! AAATCACAAAATTCATGACA+GGG - chr4.4:27952301-27952320 MS.gene006949:CDS 25.0%
! AAATGATTAAGACGATTTGA+TGG + chr4.4:27949082-27949101 None:intergenic 25.0%
! AACAAACCTAGATTTAATCT+AGG + chr4.4:27951778-27951797 None:intergenic 25.0%
! AATTAGTAACAAAAGAGCAA+AGG + chr4.4:27949981-27950000 None:intergenic 25.0%
! ACATATTCAAAACGTAGAAA+TGG - chr4.4:27948989-27949008 MS.gene006949:CDS 25.0%
! AGAAGAAGAAAAATATGAAG+AGG + chr4.4:27949133-27949152 None:intergenic 25.0%
! AGATGATGCATCAAAAATTT+GGG + chr4.4:27952383-27952402 None:intergenic 25.0%
! ATTACAACAACAACTTCAAA+TGG - chr4.4:27950710-27950729 MS.gene006949:intron 25.0%
! ATTTCACATATTTACGAACT+TGG + chr4.4:27950388-27950407 None:intergenic 25.0%
! CTAGTTAAGAAGAGAATTTA+AGG + chr4.4:27950667-27950686 None:intergenic 25.0%
! CTATAGATGTCATCTTTAAT+GGG + chr4.4:27950876-27950895 None:intergenic 25.0%
! CTTAAATTCTCTTCTTAACT+AGG - chr4.4:27950665-27950684 MS.gene006949:intron 25.0%
! GAAATTTGAGAAATTAAAGG+AGG - chr4.4:27951411-27951430 MS.gene006949:intron 25.0%
! GAAGAAGAAAAATATGAAGA+GGG + chr4.4:27949132-27949151 None:intergenic 25.0%
! TAGATGAAACAATATAGGAA+AGG + chr4.4:27950489-27950508 None:intergenic 25.0%
! TATTACGAATTAGAATTTCG+GGG - chr4.4:27951317-27951336 MS.gene006949:intron 25.0%
! TGAAAACTTCTAAACACATT+AGG - chr4.4:27949739-27949758 MS.gene006949:intron 25.0%
! TTTCTCTAACATTTACTGAT+AGG - chr4.4:27950060-27950079 MS.gene006949:intron 25.0%
!! TTTCTTTTCTTCTATGGATT+AGG - chr4.4:27949390-27949409 MS.gene006949:intron 25.0%
!!! AATCGTCTTAATCATTTTTC+AGG - chr4.4:27949085-27949104 MS.gene006949:intron 25.0%
!!! ATCATTTTTCAGGTAAAAGA+AGG - chr4.4:27949095-27949114 MS.gene006949:intron 25.0%
!!! CTTCTAAATACGTGTTTTTA+AGG - chr4.4:27952095-27952114 MS.gene006949:intron 25.0%
!!! GTTATATTTTTGTTGTAAGC+AGG - chr4.4:27949616-27949635 MS.gene006949:intron 25.0%
!!! TTTTTGTAGTATTGGTATAG+TGG - chr4.4:27952240-27952259 MS.gene006949:CDS 25.0%
AAAAAACGTAGTAGAAACCT+TGG - chr4.4:27950915-27950934 MS.gene006949:intron 30.0%
AAATTAAAGGAGGTAGCTTT+AGG - chr4.4:27951421-27951440 MS.gene006949:intron 30.0%
AATAAAACTATGATGTGTGG+AGG + chr4.4:27951854-27951873 None:intergenic 30.0%
AATCACAAAATTCATGACAG+GGG - chr4.4:27952302-27952321 MS.gene006949:CDS 30.0%
ACCAATAAAACTATGATGTG+TGG + chr4.4:27951857-27951876 None:intergenic 30.0%
AGCAGTAGATGAAACAATAT+AGG + chr4.4:27950494-27950513 None:intergenic 30.0%
CAAGAAATGTTTATCCAGTT+CGG + chr4.4:27951694-27951713 None:intergenic 30.0%
CGAACCTTATATGTCAAAAT+CGG + chr4.4:27951290-27951309 None:intergenic 30.0%
GAACATACTTATCTCTTTCT+TGG + chr4.4:27949680-27949699 None:intergenic 30.0%
GAACCTTATATGTCAAAATC+GGG + chr4.4:27951289-27951308 None:intergenic 30.0%
GAGATGATGCATCAAAAATT+TGG + chr4.4:27952384-27952403 None:intergenic 30.0%
GAGCAATATCAATATCACAA+AGG + chr4.4:27949045-27949064 None:intergenic 30.0%
GATGATGCATCAAAAATTTG+GGG + chr4.4:27952382-27952401 None:intergenic 30.0%
GCTATAGATGTCATCTTTAA+TGG + chr4.4:27950877-27950896 None:intergenic 30.0%
GTAATCTACTAACTTCTTGT+TGG + chr4.4:27950695-27950714 None:intergenic 30.0%
TGTCACTCAAAATTGAGATT+TGG - chr4.4:27951167-27951186 MS.gene006949:intron 30.0%
TTAATTACCTGAATAGCTGA+TGG + chr4.4:27951126-27951145 None:intergenic 30.0%
! AATTAAAGGAGGTAGCTTTA+GGG - chr4.4:27951422-27951441 MS.gene006949:intron 30.0%
! GTACAAGAAATTAGCTTAGA+AGG + chr4.4:27951592-27951611 None:intergenic 30.0%
!! ATTTGACTTGAAATCATTGC+TGG - chr4.4:27949487-27949506 MS.gene006949:intron 30.0%
!! CTCTCTTTATCTTTTGTTTG+TGG - chr4.4:27951731-27951750 MS.gene006949:intron 30.0%
!! GTTTTAGATACAATGGTTTG+TGG - chr4.4:27949310-27949329 MS.gene006949:intron 30.0%
!!! GAAACATTTTGAAACACCTT+GGG - chr4.4:27951491-27951510 MS.gene006949:intron 30.0%
!!! TCCACACATCATAGTTTTAT+TGG - chr4.4:27951853-27951872 MS.gene006949:intron 30.0%
!!! TTCTACTACGTTTTTTTCAC+CGG + chr4.4:27950911-27950930 None:intergenic 30.0%
AAATGGTAGAGGAGCAAATA+AGG - chr4.4:27950727-27950746 MS.gene006949:intron 35.0%
AATTGTTCTAATGTTTGGGG+TGG - chr4.4:27950825-27950844 MS.gene006949:intron 35.0%
ACAACAACTTCAAATGGTAG+AGG - chr4.4:27950716-27950735 MS.gene006949:intron 35.0%
ATCAATCTCTCCCTTAAAGT+TGG - chr4.4:27951657-27951676 MS.gene006949:intron 35.0%
ATGAAGAAGGAACAGAAGAA+TGG + chr4.4:27949881-27949900 None:intergenic 35.0%
CATCACTATGGGCATTATAT+TGG + chr4.4:27949594-27949613 None:intergenic 35.0%
CCAACTTAGACCAACTTTAA+GGG + chr4.4:27951670-27951689 None:intergenic 35.0%
CGAACTGGATAAACATTTCT+TGG - chr4.4:27951692-27951711 MS.gene006949:CDS 35.0%
CTTTGATTAGGGTTTCTTGA+GGG - chr4.4:27951453-27951472 MS.gene006949:intron 35.0%
TACGAACTTGGACATATGAA+GGG + chr4.4:27950376-27950395 None:intergenic 35.0%
TACTTATCTCTTTCTTGGTC+AGG + chr4.4:27949675-27949694 None:intergenic 35.0%
TCCAACTTAGACCAACTTTA+AGG + chr4.4:27951671-27951690 None:intergenic 35.0%
TCTACTGCTTCAATCAAGTT+CGG - chr4.4:27950505-27950524 MS.gene006949:intron 35.0%
TCTTTGATTAGGGTTTCTTG+AGG - chr4.4:27951452-27951471 MS.gene006949:intron 35.0%
TGAAGAAGGAACAGAAGAAT+GGG + chr4.4:27949880-27949899 None:intergenic 35.0%
TGGTCAAGATCCTAATCTAT+AGG + chr4.4:27949451-27949470 None:intergenic 35.0%
TTACGAACTTGGACATATGA+AGG + chr4.4:27950377-27950396 None:intergenic 35.0%
TTTGATTAGGGTTTCTTGAG+GGG - chr4.4:27951454-27951473 MS.gene006949:intron 35.0%
! AAAGTCTGAAACACCAAAAC+TGG + chr4.4:27951246-27951265 None:intergenic 35.0%
! AAGTCTGAAACACCAAAACT+GGG + chr4.4:27951245-27951264 None:intergenic 35.0%
! AGATGTCATCTTTAATGGGT+CGG + chr4.4:27950872-27950891 None:intergenic 35.0%
! ATGCATCAAAAATTTGGGGT+TGG + chr4.4:27952378-27952397 None:intergenic 35.0%
! CATTTTGCAGTATTTGCTCA+GGG - chr4.4:27950317-27950336 MS.gene006949:intron 35.0%
! GATTTCTGAGAGTATACCTT+CGG + chr4.4:27949835-27949854 None:intergenic 35.0%
! GCTTTTGCAGTAAATTGTGA+AGG + chr4.4:27949513-27949532 None:intergenic 35.0%
! TCATTGAGTGTCTTGTTCAT+TGG - chr4.4:27951524-27951543 MS.gene006949:CDS 35.0%
! TTTTGATGCATCATCTCCTA+TGG - chr4.4:27952387-27952406 MS.gene006949:CDS 35.0%
!! TTCGTTCTTCATGTTTTGAG+AGG - chr4.4:27951374-27951393 MS.gene006949:intron 35.0%
!! TTTTGTTGTAAGCAGGATAG+AGG - chr4.4:27949623-27949642 MS.gene006949:intron 35.0%
!!! CGAGTTTTGAGCACTATAAA+AGG - chr4.4:27951350-27951369 MS.gene006949:intron 35.0%
!!! GGAAACATTTTGAAACACCT+TGG - chr4.4:27951490-27951509 MS.gene006949:intron 35.0%
!!! TCGTTCTTCATGTTTTGAGA+GGG - chr4.4:27951375-27951394 MS.gene006949:intron 35.0%
AATGTTAGTTGGCTGCAAGA+TGG - chr4.4:27952343-27952362 MS.gene006949:CDS 40.0%
AGGGTTGAGGATCTTTGATT+AGG - chr4.4:27951441-27951460 MS.gene006949:intron 40.0%
CCAACTAACATTCTCGAAAG+AGG + chr4.4:27952335-27952354 None:intergenic 40.0%
CCTCTTTCGAGAATGTTAGT+TGG - chr4.4:27952332-27952351 MS.gene006949:CDS 40.0%
CTAACATTCTCGAAAGAGGT+CGG + chr4.4:27952331-27952350 None:intergenic 40.0%
CTACTGCTTCAATCAAGTTC+GGG - chr4.4:27950506-27950525 MS.gene006949:intron 40.0%
GCATGTTTATTCATGGTTGC+AGG - chr4.4:27951065-27951084 MS.gene006949:intron 40.0%
GGGTTGAGGATCTTTGATTA+GGG - chr4.4:27951442-27951461 MS.gene006949:intron 40.0%
GTATGATCCATCAGCTATTC+AGG - chr4.4:27951116-27951135 MS.gene006949:intron 40.0%
TAAAATTGGGGTCCGATTCT+TGG - chr4.4:27951219-27951238 MS.gene006949:intron 40.0%
TCAAAAACAATCAGGCCTTG+AGG + chr4.4:27949222-27949241 None:intergenic 40.0%
TCTATAGCAGAGCTTGAAAC+CGG - chr4.4:27950889-27950908 MS.gene006949:intron 40.0%
TCTCAGAAATCCTCTTCTCT+CGG - chr4.4:27949844-27949863 MS.gene006949:intron 40.0%
TTGGATTGCAGCCAAAATTG+CGG - chr4.4:27951186-27951205 MS.gene006949:intron 40.0%
! ATTGTTGTTGTTGCTGCTTC+TGG - chr4.4:27951798-27951817 MS.gene006949:intron 40.0%
! CAATGATTTTCACTCACCCA+AGG + chr4.4:27951510-27951529 None:intergenic 40.0%
! CCCTTAAAGTTGGTCTAAGT+TGG - chr4.4:27951667-27951686 MS.gene006949:CDS 40.0%
! GATGTCATCTTTAATGGGTC+GGG + chr4.4:27950871-27950890 None:intergenic 40.0%
! GCATTTTGCAGTATTTGCTC+AGG - chr4.4:27950316-27950335 MS.gene006949:intron 40.0%
! GGACCCCAATTTTACCAAAT+CGG + chr4.4:27951213-27951232 None:intergenic 40.0%
! TTGAGTGTCTTGTTCATTGG+TGG - chr4.4:27951527-27951546 MS.gene006949:CDS 40.0%
!! CGGTCCGATTTGGTAAAATT+GGG - chr4.4:27951206-27951225 MS.gene006949:intron 40.0%
!! GGACCCGATTTTGACATATA+AGG - chr4.4:27951283-27951302 MS.gene006949:intron 40.0%
!! GGTCCGATTTGGTAAAATTG+GGG - chr4.4:27951207-27951226 MS.gene006949:intron 40.0%
!! GTCTTGTTCATTGGTGGATT+AGG - chr4.4:27951533-27951552 MS.gene006949:intron 40.0%
!!! CGTTCTTCATGTTTTGAGAG+GGG - chr4.4:27951376-27951395 MS.gene006949:intron 40.0%
ACAGAAGAATGGGTGAGAGA+AGG + chr4.4:27949870-27949889 None:intergenic 45.0%
ACCAAAACTGGGCCAAGAAT+CGG + chr4.4:27951234-27951253 None:intergenic 45.0%
GTTTCTTGAGGGGTTCTCTT+GGG - chr4.4:27951464-27951483 MS.gene006949:intron 45.0%
TTATGCCTCTTCTCTCCTCA+AGG - chr4.4:27949204-27949223 MS.gene006949:intron 45.0%
! ACAATGGTTTGTGGCTCGTT+GGG - chr4.4:27949319-27949338 MS.gene006949:intron 45.0%
! ACCAAATCGGACCGCAATTT+TGG + chr4.4:27951200-27951219 None:intergenic 45.0%
! CTGAGAGTATACCTTCGGTA+GGG + chr4.4:27949830-27949849 None:intergenic 45.0%
! TACAATGGTTTGTGGCTCGT+TGG - chr4.4:27949318-27949337 MS.gene006949:intron 45.0%
! TCTGAGAGTATACCTTCGGT+AGG + chr4.4:27949831-27949850 None:intergenic 45.0%
! TGTTTGGGGTGGATAAACAC+AGG - chr4.4:27950836-27950855 MS.gene006949:intron 45.0%
!! AGACATGAACTCTGAGGTTG+AGG - chr4.4:27950529-27950548 MS.gene006949:intron 45.0%
!! GCGGTCCGATTTGGTAAAAT+TGG - chr4.4:27951205-27951224 MS.gene006949:intron 45.0%
AGAAACCTTGGCACGTGTCA+TGG - chr4.4:27950927-27950946 MS.gene006949:intron 50.0%
GCCAAAATTGCGGTCCGATT+TGG - chr4.4:27951196-27951215 MS.gene006949:intron 50.0%
GGTTTCTTGAGGGGTTCTCT+TGG - chr4.4:27951463-27951482 MS.gene006949:intron 50.0%
GTTAGTTGGCTGCAAGATGG+TGG - chr4.4:27952346-27952365 MS.gene006949:CDS 50.0%
TTCGGGAGACATGAACTCTG+AGG - chr4.4:27950523-27950542 MS.gene006949:intron 50.0%
TTGAGGGGTTCTCTTGGGTT+GGG - chr4.4:27951469-27951488 MS.gene006949:intron 50.0%
! TCAGGGTACTTCAGCAGTTG+AGG - chr4.4:27950334-27950353 MS.gene006949:intron 50.0%
! TCCGATTCTTGGCCCAGTTT+TGG - chr4.4:27951230-27951249 MS.gene006949:intron 50.0%
! TGGTCTAAGTTGGACCGAAC+TGG - chr4.4:27951677-27951696 MS.gene006949:CDS 50.0%
!! AGGAGGTAGCTTTAGGGTTG+AGG - chr4.4:27951428-27951447 MS.gene006949:intron 50.0%
!! TTGCAGGGGTATTCAGAGCA+AGG - chr4.4:27950031-27950050 MS.gene006949:intron 50.0%
CTTGAGGGGTTCTCTTGGGT+TGG - chr4.4:27951468-27951487 MS.gene006949:intron 55.0%
GGCACGTGTCATGGAGAGAA+AGG - chr4.4:27950936-27950955 MS.gene006949:intron 55.0%
TACCTTCGGTAGGGTAGCTC+AGG + chr4.4:27949821-27949840 None:intergenic 55.0%
TCAGGCCTTGAGGAGAGAAG+AGG + chr4.4:27949212-27949231 None:intergenic 55.0%
TCTCTCCATGACACGTGCCA+AGG + chr4.4:27950935-27950954 None:intergenic 55.0%
TGAGAGAAGGCCGAGAGAAG+AGG + chr4.4:27949857-27949876 None:intergenic 55.0%
TTCCTGAGCTACCCTACCGA+AGG - chr4.4:27949816-27949835 MS.gene006949:intron 55.0%
!! CAGGGGTATTCAGAGCAAGG+AGG - chr4.4:27950034-27950053 MS.gene006949:intron 55.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 27948932 27952419 27948932 ID=MS.gene006949
chr4.4 mRNA 27948932 27952419 27948932 ID=MS.gene006949.t1;Parent=MS.gene006949
chr4.4 exon 27952235 27952419 27952235 ID=MS.gene006949.t1.exon1;Parent=MS.gene006949.t1
chr4.4 CDS 27952235 27952419 27952235 ID=cds.MS.gene006949.t1;Parent=MS.gene006949.t1
chr4.4 exon 27951660 27951713 27951660 ID=MS.gene006949.t1.exon2;Parent=MS.gene006949.t1
chr4.4 CDS 27951660 27951713 27951660 ID=cds.MS.gene006949.t1;Parent=MS.gene006949.t1
chr4.4 exon 27951514 27951546 27951514 ID=MS.gene006949.t1.exon3;Parent=MS.gene006949.t1
chr4.4 CDS 27951514 27951546 27951514 ID=cds.MS.gene006949.t1;Parent=MS.gene006949.t1
chr4.4 exon 27951296 27951314 27951296 ID=MS.gene006949.t1.exon4;Parent=MS.gene006949.t1
chr4.4 CDS 27951296 27951314 27951296 ID=cds.MS.gene006949.t1;Parent=MS.gene006949.t1
chr4.4 exon 27950963 27951024 27950963 ID=MS.gene006949.t1.exon5;Parent=MS.gene006949.t1
chr4.4 CDS 27950963 27951024 27950963 ID=cds.MS.gene006949.t1;Parent=MS.gene006949.t1
chr4.4 exon 27950801 27950828 27950801 ID=MS.gene006949.t1.exon6;Parent=MS.gene006949.t1
chr4.4 CDS 27950801 27950828 27950801 ID=cds.MS.gene006949.t1;Parent=MS.gene006949.t1
chr4.4 exon 27950603 27950664 27950603 ID=MS.gene006949.t1.exon7;Parent=MS.gene006949.t1
chr4.4 CDS 27950603 27950664 27950603 ID=cds.MS.gene006949.t1;Parent=MS.gene006949.t1
chr4.4 exon 27950394 27950493 27950394 ID=MS.gene006949.t1.exon8;Parent=MS.gene006949.t1
chr4.4 CDS 27950394 27950493 27950394 ID=cds.MS.gene006949.t1;Parent=MS.gene006949.t1
chr4.4 exon 27950214 27950264 27950214 ID=MS.gene006949.t1.exon9;Parent=MS.gene006949.t1
chr4.4 CDS 27950214 27950264 27950214 ID=cds.MS.gene006949.t1;Parent=MS.gene006949.t1
chr4.4 exon 27948932 27949029 27948932 ID=MS.gene006949.t1.exon10;Parent=MS.gene006949.t1
chr4.4 CDS 27948932 27949029 27948932 ID=cds.MS.gene006949.t1;Parent=MS.gene006949.t1
Gene Sequence

>MS.gene006949

ATGGGTCGTGTTAAACTTGAGATAAAAAGAATAGAGAACACAGTGAATCGACAAGTTACATATTCAAAACGTAGAAATGGTCTCATTAAGAAAGCTTATGAGTTATCAATCCTTTGTGATATTGATATTGCTCTTATAATGTTTTCTCCATCAAATCGTCTTAATCATTTTTCAGGTAAAAGAAGGTATGCATTGAACCCTCTTCATATTTTTCTTCTTCTTTCTTTTACAAACTATATATGTATTGGTTTAATTTATTAATAATCAATTTATTATGCCTCTTCTCTCCTCAAGGCCTGATTGTTTTTGATAGATTTTGTGAAAATTAAGATTGTTCTACATGTTCAAAGTTAAGATTATAATTGAATCATCATTTATGTTTTAGATACAATGGTTTGTGGCTCGTTGGGTAGTTAGTTCATTCTTTTTTGTGAGATAGCTGTATTTTTTGTTATTCTTTTCTTTTCTTCTATGGATTAGGATCTATTTTTTTGTTGTTGTTGTTGTTGAATAAAACCTATAGATTAGGATCTTGACCAATTATAAAGTGAATTAATTTGACTTGAAATCATTGCTGGCCTTCACAATTTACTGCAAAAGCAGCAACAACAATATTAATGTCCATAGTGTATAATAACTTTATTTATTTACACATACATCCAATATAATGCCCATAGTGATGTTGTTATATTTTTGTTGTAAGCAGGATAGAGGATGTTTTAACTCGTTACATTAATATTCCTGACCAAGAAAGAGATAAGTATGTTCTCAACAAACAATTCATTTTGCATGAGTTATATTCTACGTTGAAAACTTCTAAACACATTAGGCTTTTTGATTTCATTATTTATGTAAGTAATTTATTTCTTGCAGTGCTGTAAGTTTTCCTGAGCTACCCTACCGAAGGTATACTCTCAGAAATCCTCTTCTCTCGGCCTTCTCTCACCCATTCTTCTGTTCCTTCTTCATTTCTTAATTGTTTTATCAATAAATTAATTATTATAGAACTTAATTATTATTTTTACTTGTCAAAAACACTTGCTTAACCTTTGCTCTTTTGTTACTAATTTGTTTCTCATTTATTTATTTATTTATTTATTTGCAGGGGTATTCAGAGCAAGGAGGTAATTTCTCTAACATTTACTGATAGGAGAAGTTTAGATCATTGCCTTTAATTAATCTTTGTCACATAATTAATTTTTGAATTTAATTTTTATACACCGTCAGTATAAAGTTATTATACACATTATTGGATGTATGTTTAAAATAACTTTACATGTAAAAAATGTTTAAGTAAAATAACTTTACGATGAAAAAATGTTTAAATTAGAAATCACACTTGTACTTTATACAAATATGAATACTTTATATTTTAGTTTATATTGCATTTTGCAGTATTTGCTCAGGGTACTTCAGCAGTTGAGGAATGAAAATGACATAGCCCTTCATATGTCCAAGTTCGTAAATATGTGAAATCTTTGAACTCTATTTAGATTACTTTATATTAGAATTTAGGATGATCAAATTAATAGTGCTAAACTTTTGTGTGTTTTTCCTTTCCTATATTGTTTCATCTACTGCTTCAATCAAGTTCGGGAGACATGAACTCTGAGGTTGAGGTAAGAACATGTCACAGTAGCATTCTGCATATTTTTTTAGAATGTATGATTTTTCCCTTCAAAATTATATTATGTAACATATTTTATTATTTATATTAGACTTTTCTCATGATCCTTAAATTCTCTTCTTAACTAGGATCTCCAACAAGAAGTTAGTAGATTACAACAACAACTTCAAATGGTAGAGGAGCAAATAAGGTTACATAACAACTAACATAGTTGATGATTAGTTTTTGCAATAATTGTCCAAAATATTTTAATTATTTTTTTCAAAAATTGTTCTAATGTTTGGGGTGGATAAACACAGGAAATATGAACCCGACCCATTAAAGATGACATCTATAGCAGAGCTTGAAACCGGTGAAAAAAACGTAGTAGAAACCTTGGCACGTGTCATGGAGAGAAAGGTTTGATAATTATCGTATTCATAATCTATATTTTTCTTCATTTTTTTTATTTTTTGGGGTACAATTTTGATAGTTTATTTATATATGGGATTTATTATTAAAAACATGCATGTTTATTCATGGTTGCAGGAACAGTTGTTGAACAACAATCTATCTTCGTATGATCCATCAGCTATTCAGGTAATTAAATGAAATAATTTATTGTTGTTTGTCACTCAAAATTGAGATTTGGATTGCAGCCAAAATTGCGGTCCGATTTGGTAAAATTGGGGTCCGATTCTTGGCCCAGTTTTGGTGTTTCAGACTTTCAGTTTGTAAAAAATTGGGACCCGATTTTGACATATAAGGTTCGAATAGTATATTACGAATTAGAATTTCGGGGCACGATTTCACGAGTTTTGAGCACTATAAAAGGTTTCGTTCTTCATGTTTTGAGAGGGGCTTCAAGAGAGAGAAATTTGAGAAATTAAAGGAGGTAGCTTTAGGGTTGAGGATCTTTGATTAGGGTTTCTTGAGGGGTTCTCTTGGGTTGGGAAACATTTTGAAACACCTTGGGTGAGTGAAAATCATTGAGTGTCTTGTTCATTGGTGGATTAGGAAAAATGTAGAAATTATGGTTTGTTCTTTGTGACCTTCTAAGCTAATTTCTTGTACCTTTTGTATCTCTTTGTAATAATTCATTGATAGTGGATTGAAGAGATCAATCTCTCCCTTAAAGTTGGTCTAAGTTGGACCGAACTGGATAAACATTTCTTGGTGTGTTTGTTTCTCTTCTCTCTTTATCTTTTGTTTGTGGTTTTGTGCTTTTCACTTTATTCCTAGATTAAATCTAGGTTTGTTATTGTTGTTGTTGCTGCTTCTGGTTACCTTGACATTAGTTACTACTTTTCTTTCCTCCACACATCATAGTTTTATTGGTGTGAGATTTGAGTCCGAATTAATAGCATTTATAAAGTAATATGAGCTATCAATTTTATCCATACATAATATAATAATGATTATGCTAACAAGTATTCTAAAGACACTTGTTAAAGATTTAAAAATAGAAATAATGATAAATTTTATATAGAAAAAGTTACTTTTTGTTGTTTTAATGTTTTGAATTCAGAGTTTTCATGATAAAATTTTTACTTTAAACTTCTAAATACGTGTTTTTAAGGTACTTATTAGCATTTCACATATAATAATGTTATGTAATTAAATGTTTGGAATTGATTTTTTTTTATAATGTAAATTCACTACATAAAACTACATATATATCATATCATAGTTTCTTTTTTTTTTTTTGTAGTATTGGTATAGTGGAAAATTATATATAAAACTTAGTATACATGATTAAATTAAAATCACAAAATTCATGACAGGGGATGCCGACCTCTTTCGAGAATGTTAGTTGGCTGCAAGATGGTGGTCAGAACCAACCCCAAATTTTTGATGCATCATCTCCTATGGATCCTCTCAG
Protein sequence

>MS.gene006949.t1

MGRVKLEIKRIENTVNRQVTYSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLNHFSGKRRIEDVLTRYINIPDQERDNAVSFPELPYRRGIQSKEYLLRVLQQLRNENDIALHMSNSGDMNSEVEDLQQEVSRLQQQLQMVEEQIRKYEPDPLKMTSIAELETGEKNVVETLARVMERKEQLLNNNLSSYDPSAIQGMPTSFENVSWLQDGGQNQPQIFDASSPMDPL