AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006950.t1 MTR_4g084750 96.939 196 6 0 1 196 1 196 5.41e-139 386
MS.gene006950.t1 MTR_2g061030 62.319 138 46 1 53 190 188 319 2.63e-52 171
MS.gene006950.t1 MTR_4g100550 53.892 167 69 3 29 193 83 243 4.01e-49 161
MS.gene006950.t1 MTR_1g054285 62.500 136 44 2 51 186 141 269 4.25e-49 162
MS.gene006950.t1 MTR_5g014890 53.896 154 60 3 52 205 113 255 4.72e-49 161
MS.gene006950.t1 MTR_4g097600 58.647 133 46 2 51 183 116 239 3.38e-48 159
MS.gene006950.t1 MTR_5g013010 52.222 180 70 4 22 195 92 261 8.67e-48 158
MS.gene006950.t1 MTR_7g093430 64.800 125 37 2 59 183 155 272 1.45e-47 158
MS.gene006950.t1 MTR_8g006705 64.706 119 37 1 64 182 145 258 7.17e-47 156
MS.gene006950.t1 MTR_1g017090 48.023 177 84 4 26 200 92 262 1.61e-43 147
MS.gene006950.t1 MTR_3g103590 49.342 152 68 2 58 207 138 282 2.28e-35 126
MS.gene006950.t1 MTR_2g038625 43.396 159 80 4 28 183 44 195 3.08e-34 121
MS.gene006950.t1 MTR_2g038580 43.396 159 80 4 28 183 44 195 3.08e-34 121
MS.gene006950.t1 MTR_4g126900 49.153 118 54 3 67 182 90 203 3.70e-28 105
MS.gene006950.t1 MTR_5g013010 53.922 102 36 3 21 116 91 187 6.36e-21 86.7
MS.gene006950.t1 MTR_6g007647 48.352 91 47 0 62 152 30 120 9.71e-20 84.3
MS.gene006950.t1 MTR_6g007647 48.352 91 47 0 62 152 64 154 2.46e-19 84.0
MS.gene006950.t1 MTR_5g038280 34.197 193 92 5 4 166 21 208 2.54e-17 79.0
MS.gene006950.t1 MTR_6g011610 39.695 131 75 2 26 152 34 164 5.27e-17 77.4
MS.gene006950.t1 MTR_8g468210 35.849 159 93 3 5 159 22 175 5.68e-17 77.4
MS.gene006950.t1 MTR_7g010020 43.750 96 47 1 64 152 79 174 1.24e-16 76.3
MS.gene006950.t1 MTR_6g011610 37.410 139 75 1 14 152 57 183 1.37e-16 76.3
MS.gene006950.t1 MTR_5g039000 43.564 101 57 0 52 152 64 164 3.54e-16 75.5
MS.gene006950.t1 MTR_8g469430 44.792 96 46 1 63 151 87 182 4.65e-16 75.1
MS.gene006950.t1 MTR_7g103340 42.000 100 57 1 54 152 51 150 5.31e-16 73.9
MS.gene006950.t1 MTR_3g080100 38.028 142 73 4 26 152 12 153 1.33e-15 73.6
MS.gene006950.t1 MTR_1g061660 46.067 89 48 0 65 153 59 147 1.67e-15 72.8
MS.gene006950.t1 MTR_3g086790 42.202 109 54 3 53 152 46 154 1.92e-15 73.6
MS.gene006950.t1 MTR_3g080100 42.202 109 54 2 53 152 6 114 2.57e-15 72.0
MS.gene006950.t1 MTR_4g107650 45.161 93 44 1 65 150 95 187 3.50e-14 70.5
MS.gene006950.t1 MTR_5g019650 53.731 67 31 0 65 131 53 119 2.96e-13 66.2
MS.gene006950.t1 MTR_5g019680 53.731 67 31 0 65 131 53 119 3.14e-13 66.2
MS.gene006950.t1 MTR_8g089895 45.455 99 51 2 53 150 43 139 4.47e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006950.t1 AT2G01430 65.957 188 49 4 1 184 74 250 6.63e-78 235
MS.gene006950.t1 AT1G70920 59.474 190 56 5 1 184 1 175 1.08e-57 181
MS.gene006950.t1 AT1G70920 62.025 158 41 3 33 184 1 145 1.55e-56 177
MS.gene006950.t1 AT5G06710 49.761 209 86 6 1 205 133 326 3.37e-52 171
MS.gene006950.t1 AT4G37790 56.489 131 51 1 53 183 114 238 4.30e-47 156
MS.gene006950.t1 AT3G60390 62.406 133 42 3 52 182 148 274 5.63e-47 157
MS.gene006950.t1 AT4G16780 61.905 126 43 2 59 184 123 243 1.05e-46 155
MS.gene006950.t1 AT2G22800 57.895 133 46 2 51 183 103 225 6.11e-46 153
MS.gene006950.t1 AT2G44910 62.295 122 41 1 64 185 162 278 3.28e-45 152
MS.gene006950.t1 AT4G17460 58.015 131 50 1 53 183 123 248 1.29e-44 150
MS.gene006950.t1 AT5G47370 58.647 133 47 2 51 183 119 243 3.13e-44 149
MS.gene006950.t1 AT2G01430 59.350 123 43 3 1 119 74 193 5.60e-41 139
MS.gene006950.t1 AT5G06710 48.305 118 50 4 1 116 133 241 7.16e-22 90.5
MS.gene006950.t1 AT3G01470 47.778 90 47 0 63 152 66 155 8.41e-18 79.7
MS.gene006950.t1 AT1G26960 40.323 124 68 1 52 175 58 175 1.02e-16 76.6
MS.gene006950.t1 AT1G69780 43.564 101 57 0 52 152 72 172 2.60e-16 75.9
MS.gene006950.t1 AT4G36740 42.574 101 58 0 56 156 47 147 1.89e-14 69.7
MS.gene006950.t1 AT5G65310 46.512 86 46 0 65 150 72 157 1.92e-14 70.9
MS.gene006950.t1 AT5G65310 46.512 86 46 0 65 150 54 139 2.00e-14 70.9
MS.gene006950.t1 AT4G36740 42.574 101 58 0 56 156 46 146 2.24e-14 69.3
MS.gene006950.t1 AT2G36610 40.367 109 56 2 53 153 60 167 3.68e-14 68.2
MS.gene006950.t1 AT2G18550 42.857 98 56 0 54 151 50 147 4.91e-14 68.6
MS.gene006950.t1 AT1G27045 52.778 72 34 0 65 136 25 96 9.52e-14 67.0
MS.gene006950.t1 AT1G27045 52.778 72 34 0 65 136 25 96 9.52e-14 67.0
MS.gene006950.t1 AT5G03790 42.391 92 53 0 65 156 77 168 9.83e-14 68.2
MS.gene006950.t1 AT1G27045 45.745 94 44 1 65 151 68 161 1.21e-13 67.8
MS.gene006950.t1 AT1G27045 52.778 72 34 0 65 136 17 88 1.22e-13 66.6
MS.gene006950.t1 AT5G15150 45.455 88 48 0 65 152 115 202 1.74e-13 68.2
MS.gene006950.t1 AT4G40060 45.349 86 47 0 65 150 59 144 3.26e-13 67.4
MS.gene006950.t1 AT1G27045 52.778 72 34 0 65 136 68 139 3.47e-13 66.6
MS.gene006950.t1 AT2G22430 46.512 86 46 0 65 150 62 147 5.06e-13 67.0
MS.gene006950.t1 AT3G01220 34.375 160 84 5 5 143 6 165 6.49e-13 66.2
MS.gene006950.t1 AT5G66700 47.561 82 41 1 49 130 57 136 1.05e-12 65.1
MS.gene006950.t1 AT5G03790 35.246 122 77 1 59 178 71 192 2.54e-11 60.8

Find 63 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAGAAAGCAGCGTTAA+TGG 0.245343 4.4:-27893654 MS.gene006950:CDS
AAAGAGAAGTTGAGGAGCTT+AGG 0.327770 4.4:-27889950 MS.gene006950:CDS
AGCGACTGTGGCGGTGGTAT+TGG 0.370541 4.4:+27889827 None:intergenic
GATGAGGGGAGAAAAGAAAT+TGG 0.383567 4.4:+27894644 None:intergenic
AAGACCCAAACCACCTCTTC+AGG 0.404339 4.4:+27889997 None:intergenic
GGTGGTGACACGCTCACATC+GGG 0.415895 4.4:+27889848 None:intergenic
TGCCATCCATTCTTCTTCTA+CGG 0.429731 4.4:+27893686 None:intergenic
TGAAGCTTTCTTCAAGGAGA+TGG 0.431949 4.4:+27893589 None:intergenic
AAGAGAAGTTGAGGAGCTTA+GGG 0.432553 4.4:-27889949 MS.gene006950:CDS
CAACTTCTCTTTGTAGCCTC+CGG 0.434325 4.4:+27889961 None:intergenic
ACAGAAGCAGAAAGAGTGTT+TGG 0.439755 4.4:-27893379 MS.gene006950:intron
ATTGGTGAAGAAGCAAAGCC+TGG 0.448686 4.4:+27894662 None:intergenic
GAATACCTGAAGAGGTGGTT+TGG 0.451281 4.4:-27890002 MS.gene006950:CDS
GGTCTTTAACTGAACAAAAC+CGG 0.455555 4.4:-27889980 MS.gene006950:CDS
ACCTACAAGTTCCTCCAGCT+TGG 0.470781 4.4:-27894702 MS.gene006950:CDS
AACCACACCTCCACTTGCCT+TGG 0.476841 4.4:+27893336 None:intergenic
GAAGCTTTCTTCAAGGAGAT+GGG 0.480176 4.4:+27893590 None:intergenic
AATACCTGAAGAGGTGGTTT+GGG 0.488971 4.4:-27890001 MS.gene006950:CDS
TTCGGCAGCGACTGTGGCGG+TGG 0.489852 4.4:+27889821 None:intergenic
CACATTGATAAGGTTGAAGC+TGG 0.491305 4.4:+27889873 None:intergenic
TGTCATGCTTGTCACACTCT+AGG 0.496223 4.4:+27889768 None:intergenic
GTCATGCTTGTCACACTCTA+GGG 0.499070 4.4:+27889769 None:intergenic
ATTCTTCTTCTACGGTTACT+CGG 0.502354 4.4:+27893694 None:intergenic
TAATTACTGGGTTTAAAGTG+TGG 0.513978 4.4:+27893559 None:intergenic
GACTGTGGCGGTGGTATTGG+TGG 0.515726 4.4:+27889830 None:intergenic
TCCAAGCTGGAGGAACTTGT+AGG 0.518571 4.4:+27894701 None:intergenic
GAGTAACCGTAGAAGAAGAA+TGG 0.519061 4.4:-27893692 MS.gene006950:CDS
GGTTTCAAAACCGTAGGGCC+AGG 0.531848 4.4:-27893317 MS.gene006950:intron
AGCAAAGCCTGGGATAGATA+TGG 0.534631 4.4:+27894673 None:intergenic
CAAGTTGAAGCAGACAGAGA+TGG 0.539564 4.4:-27890030 MS.gene006950:CDS
GGAGCTTAGGGCTATGAAGA+TGG 0.542259 4.4:-27889937 MS.gene006950:CDS
GATAAGGTTGAAGCTGGAAG+AGG 0.548416 4.4:+27889879 None:intergenic
GAATTGACCATATCTATCCC+AGG 0.565626 4.4:-27894680 MS.gene006950:CDS
AGAATGGATGGCACTAGAAG+AGG 0.577292 4.4:-27893676 MS.gene006950:CDS
TTAGCCTTTACCTGGCCCTA+CGG 0.577524 4.4:+27893307 None:intergenic
AGATATGGTCAATTCCAAGC+TGG 0.579606 4.4:+27894688 None:intergenic
ACACCTCCACTTGCCTTGGT+CGG 0.580254 4.4:+27893340 None:intergenic
GTGCTACTTACCAGATGATG+AGG 0.582615 4.4:+27894628 None:intergenic
ACATCGGGGACACATTGATA+AGG 0.583310 4.4:+27889863 None:intergenic
TGCAGCTTAAGCTCCGACCA+AGG 0.586714 4.4:-27893353 MS.gene006950:CDS
GACCAAGGCAAGTGGAGGTG+TGG 0.601638 4.4:-27893338 MS.gene006950:CDS
AACCGTAGAAGAAGAATGGA+TGG 0.604290 4.4:-27893688 MS.gene006950:CDS
TGGTGGTGACACGCTCACAT+CGG 0.609053 4.4:+27889847 None:intergenic
TGCTACTTACCAGATGATGA+GGG 0.609343 4.4:+27894629 None:intergenic
TAAGCTCCGACCAAGGCAAG+TGG 0.615426 4.4:-27893346 MS.gene006950:CDS
AGGTGTGGTTTCAAAACCGT+AGG 0.616349 4.4:-27893323 MS.gene006950:CDS
TTGGTGAAGAAGCAAAGCCT+GGG 0.624929 4.4:+27894663 None:intergenic
CACTCTAGGGGACAAAATGA+CGG 0.630061 4.4:+27889782 None:intergenic
CAAGAAACTGCGTCTAACAA+AGG 0.630784 4.4:-27893619 MS.gene006950:CDS
GAGGCTACAAAGAGAAGTTG+AGG 0.631401 4.4:-27889958 MS.gene006950:CDS
TGGAGTGCGAATACCTGAAG+AGG 0.632527 4.4:-27890010 MS.gene006950:CDS
TGAGGAGATAACACAGTAGG+TGG 0.632854 4.4:+27889912 None:intergenic
TATGGTCAATTCCAAGCTGG+AGG 0.639066 4.4:+27894691 None:intergenic
CTGTGAGGAGATAACACAGT+AGG 0.640869 4.4:+27889909 None:intergenic
GTTAGACGCAGTTTCTTGCG+AGG 0.647544 4.4:+27893624 None:intergenic
GGTGTGGTTTCAAAACCGTA+GGG 0.647806 4.4:-27893322 MS.gene006950:CDS
GCTCCGACCAAGGCAAGTGG+AGG 0.651935 4.4:-27893343 MS.gene006950:CDS
TCATGCTTGTCACACTCTAG+GGG 0.663913 4.4:+27889770 None:intergenic
AGTGCGAATACCTGAAGAGG+TGG 0.667742 4.4:-27890007 MS.gene006950:CDS
GGAAGAGGCTCAGAACTGTG+AGG 0.688248 4.4:+27889894 None:intergenic
GCTACTTACCAGATGATGAG+GGG 0.700104 4.4:+27894630 None:intergenic
CTTTAACTGAACAAAACCGG+AGG 0.724376 4.4:-27889977 MS.gene006950:CDS
GTGGTGACACGCTCACATCG+GGG 0.751626 4.4:+27889849 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAATAATAAATTTAA+GGG + chr4.4:27890134-27890153 None:intergenic 0.0%
!! TTATAAAAATAATAAATTTA+AGG + chr4.4:27890135-27890154 None:intergenic 0.0%
!! AAAAATTCATAATTCTTTAT+AGG + chr4.4:27890737-27890756 None:intergenic 10.0%
!! AAAGTAAAAAATTGTATATT+AGG + chr4.4:27890280-27890299 None:intergenic 10.0%
!! AACAAAAAGTTAATATTAAA+CGG - chr4.4:27890153-27890172 MS.gene006950:intron 10.0%
!! AAGAAAATATGAATAAATTA+AGG + chr4.4:27891000-27891019 None:intergenic 10.0%
!! AATAAAATTAAAACAATGAT+CGG - chr4.4:27890070-27890089 MS.gene006950:intron 10.0%
!! AATTATATGCATATTAATTA+AGG + chr4.4:27891082-27891101 None:intergenic 10.0%
!! ATTAATAATGATAACATTTA+AGG - chr4.4:27892492-27892511 MS.gene006950:intron 10.0%
!! TAAAAAAATGATATATTTGT+CGG - chr4.4:27890597-27890616 MS.gene006950:intron 10.0%
!! TATATTATATATCTAACTTT+AGG + chr4.4:27890701-27890720 None:intergenic 10.0%
!! TTAATTAATATGCATATAAT+TGG - chr4.4:27891081-27891100 MS.gene006950:intron 10.0%
!!! TTAAAGAAAGAATAATATTT+TGG + chr4.4:27894084-27894103 None:intergenic 10.0%
!! AAAAAAATGATATATTTGTC+GGG - chr4.4:27890598-27890617 MS.gene006950:intron 15.0%
!! AAATTATCATAATCAACTAT+TGG + chr4.4:27894118-27894137 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr4.4:27893374-27893393 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr4.4:27893373-27893392 MS.gene006950:CDS 15.0%
!! AATAGTTGATTATGATAATT+TGG - chr4.4:27894117-27894136 MS.gene006950:intron 15.0%
!! ATATTTAACCTATTAATGTA+AGG + chr4.4:27893613-27893632 None:intergenic 15.0%
!! GAATAATAACAAAGATAATA+TGG + chr4.4:27891850-27891869 None:intergenic 15.0%
!! TATTTAACCTATTAATGTAA+GGG + chr4.4:27893612-27893631 None:intergenic 15.0%
!! TTAAAAAATGAAACCAATAA+TGG + chr4.4:27890026-27890045 None:intergenic 15.0%
!! TTGTTTAGTAATAAAATGTT+AGG - chr4.4:27891465-27891484 MS.gene006950:intron 15.0%
!!! AAAGAATTATGAATTTTTGT+TGG - chr4.4:27890739-27890758 MS.gene006950:intron 15.0%
!!! AAGAATTATGAATTTTTGTT+GGG - chr4.4:27890740-27890759 MS.gene006950:intron 15.0%
!!! AATAAATAAGAGTATAATAG+TGG + chr4.4:27892649-27892668 None:intergenic 15.0%
!!! ATAATAATGTTTTTATGAAC+CGG - chr4.4:27892396-27892415 MS.gene006950:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + chr4.4:27893247-27893266 None:intergenic 15.0%
!!! TACAAATAGAAATTTTATCT+TGG + chr4.4:27893547-27893566 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr4.4:27893350-27893369 None:intergenic 15.0%
!!! TCATCTCTTAATTTAATTTT+AGG + chr4.4:27891766-27891785 None:intergenic 15.0%
!!! TTCATTTATTTTACCATTAT+TGG - chr4.4:27890010-27890029 MS.gene006950:CDS 15.0%
!!! TTGATCTTTATTGTTTTTTT+AGG - chr4.4:27890346-27890365 MS.gene006950:intron 15.0%
!!! TTTCATATATAGTCTTAATT+AGG + chr4.4:27891322-27891341 None:intergenic 15.0%
!! AAACTAACCAATAGTTAATA+AGG - chr4.4:27893364-27893383 MS.gene006950:CDS 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr4.4:27893287-27893306 None:intergenic 20.0%
!! AGAAGAAAAAAATAAGTATG+TGG + chr4.4:27890193-27890212 None:intergenic 20.0%
!! ATAAATTAAGGTCATGTAAA+TGG + chr4.4:27890988-27891007 None:intergenic 20.0%
!! CCACTAACTATAATTAATAA+GGG - chr4.4:27892692-27892711 MS.gene006950:intron 20.0%
!! CTTATAATAAAAGCAATGAT+AGG + chr4.4:27893121-27893140 None:intergenic 20.0%
!! GAAGAAAAAAATAAGTATGT+GGG + chr4.4:27890192-27890211 None:intergenic 20.0%
!! GTAACATAGTATTAATTGAA+GGG + chr4.4:27894054-27894073 None:intergenic 20.0%
!! TAAAATTATGAATATGAACC+CGG + chr4.4:27892418-27892437 None:intergenic 20.0%
!! TAAATTAAGGTCATGTAAAT+GGG + chr4.4:27890987-27891006 None:intergenic 20.0%
!! TACAATGACTGAAAAAAATA+AGG + chr4.4:27890307-27890326 None:intergenic 20.0%
!! TCCACTAACTATAATTAATA+AGG - chr4.4:27892691-27892710 MS.gene006950:intron 20.0%
!! TGTAACATAGTATTAATTGA+AGG + chr4.4:27894055-27894074 None:intergenic 20.0%
!! TTAATAAAACTCCATAAACA+CGG + chr4.4:27893756-27893775 None:intergenic 20.0%
!!! ATTTTACCTATATTTGCTTT+AGG + chr4.4:27890249-27890268 None:intergenic 20.0%
!!! ATTTTTTAACCATTAACTTG+AGG - chr4.4:27893570-27893589 MS.gene006950:CDS 20.0%
!!! CATTGATTAAAATGATGATA+TGG + chr4.4:27894406-27894425 None:intergenic 20.0%
!!! TAAGCAAATTTTGACTTTTT+AGG + chr4.4:27894259-27894278 None:intergenic 20.0%
!!! TAATAATGTTTTTATGAACC+GGG - chr4.4:27892397-27892416 MS.gene006950:intron 20.0%
!!! TCTTTTCAATTCTTTTTCAT+CGG + chr4.4:27891498-27891517 None:intergenic 20.0%
!!! TGTACGTTGAATTAATATTT+TGG - chr4.4:27894426-27894445 MS.gene006950:intron 20.0%
!!! TTATTTTTTTCTTCTTCTTG+AGG - chr4.4:27890198-27890217 MS.gene006950:intron 20.0%
!!! TTGCTTTTATTATAAGACAA+AGG - chr4.4:27893125-27893144 MS.gene006950:intron 20.0%
!!! TTGTTTTAACTTCTTTAACT+TGG + chr4.4:27892442-27892461 None:intergenic 20.0%
! AAAAAACTTTAGGTACTAGT+TGG + chr4.4:27890661-27890680 None:intergenic 25.0%
! AAGACAAAGGAATTACATTA+AGG - chr4.4:27893138-27893157 MS.gene006950:intron 25.0%
! AAGGTGCACTTAATAATTAT+TGG + chr4.4:27893811-27893830 None:intergenic 25.0%
! AATATTAAACGGCCTATAAA+GGG - chr4.4:27890164-27890183 MS.gene006950:intron 25.0%
! AATGATTAAGAGAAAGAGAA+TGG + chr4.4:27893407-27893426 None:intergenic 25.0%
! ACAATTAGCTCACTTAATTA+AGG - chr4.4:27891347-27891366 MS.gene006950:intron 25.0%
! ACTTTAAACGACTATTATTG+TGG - chr4.4:27892787-27892806 MS.gene006950:intron 25.0%
! ATAAAAAAACACAACTGTAG+TGG + chr4.4:27890111-27890130 None:intergenic 25.0%
! ATTAATTATAGTTAGTGGAG+TGG + chr4.4:27892690-27892709 None:intergenic 25.0%
! CATGATGATTATAAATGCAT+GGG + chr4.4:27893863-27893882 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - chr4.4:27894195-27894214 MS.gene006950:intron 25.0%
! CATTCAATAAATGATGTATG+TGG + chr4.4:27894214-27894195 None:intergenic 25.0%
! CATTCGTTCTTGAAAATATT+TGG + chr4.4:27892291-27892310 None:intergenic 25.0%
! CCCTTATTAATTATAGTTAG+TGG + chr4.4:27892695-27892714 None:intergenic 25.0%
! GTTCTTGAAAATTGTTTGAT+TGG - chr4.4:27892236-27892255 MS.gene006950:intron 25.0%
! GTTGACATTCTATAACATAA+AGG - chr4.4:27891701-27891720 MS.gene006950:intron 25.0%
! TAACTTCCTAAAGCAAATAT+AGG - chr4.4:27890240-27890259 MS.gene006950:intron 25.0%
! TAATATTAAACGGCCTATAA+AGG - chr4.4:27890163-27890182 MS.gene006950:intron 25.0%
! TCATGATGATTATAAATGCA+TGG + chr4.4:27893864-27893883 None:intergenic 25.0%
! TCCTCTCAAAAAAAAACTTT+AGG + chr4.4:27890671-27890690 None:intergenic 25.0%
!! AATTTGCTTATAATAGTGAC+CGG - chr4.4:27894269-27894288 MS.gene006950:intron 25.0%
!! AATTTGCTTATAATAGTGAC+CGG + chr4.4:27894288-27894269 None:intergenic 25.0%
!! AGGTTTATGTTAAGTTTTCA+TGG - chr4.4:27892003-27892022 MS.gene006950:intron 25.0%
!! AGTAAGTTGTATGATTTTGA+TGG - chr4.4:27891538-27891557 MS.gene006950:intron 25.0%
!! ATGAATTTTTGTTGGGAAAT+TGG - chr4.4:27890747-27890766 MS.gene006950:intron 25.0%
!! TCTTGGTAAAAGAAAGATTT+TGG + chr4.4:27890964-27890983 None:intergenic 25.0%
!! TGAATTTTTGTTGGGAAATT+GGG - chr4.4:27890748-27890767 MS.gene006950:intron 25.0%
!!! AAACGACACTTATTTTGAAA+CGG + chr4.4:27893954-27893973 None:intergenic 25.0%
!!! AACTTGATTTTGCGTTTTTT+TGG + chr4.4:27892033-27892052 None:intergenic 25.0%
!!! ACCTAAAGTTTTTTTTTGAG+AGG - chr4.4:27890667-27890686 MS.gene006950:intron 25.0%
!!! ATCTTTGTTATTATTCTCCT+AGG - chr4.4:27891854-27891873 MS.gene006950:intron 25.0%
!!! ATGAGTCAATTTTTGAAGTT+AGG - chr4.4:27892308-27892327 MS.gene006950:intron 25.0%
!!! ATTTTGGAGGTATAATTACT+GGG + chr4.4:27890948-27890967 None:intergenic 25.0%
!!! GTGTAAGTAATCACTTTTTA+TGG + chr4.4:27893914-27893933 None:intergenic 25.0%
!!! TCTTTGTTATTATTCTCCTA+GGG - chr4.4:27891855-27891874 MS.gene006950:intron 25.0%
!!! TTTTTATGTGTGAAAGTACA+AGG - chr4.4:27893070-27893089 MS.gene006950:intron 25.0%
ACAAGGATGGTACAAAAAAA+AGG + chr4.4:27892832-27892851 None:intergenic 30.0%
AGACGATTATTATGAGATAG+AGG + chr4.4:27892578-27892597 None:intergenic 30.0%
AGGAATTACATTAAGGAGAA+TGG - chr4.4:27893145-27893164 MS.gene006950:intron 30.0%
AGTTGGAAGCTAATATATAG+AGG + chr4.4:27891212-27891231 None:intergenic 30.0%
ATAACATTTAAGGAGTTGCA+TGG - chr4.4:27892502-27892521 MS.gene006950:intron 30.0%
ATACTAGACAAAGATGCAAA+AGG + chr4.4:27889904-27889923 None:intergenic 30.0%
ATGATTATAAATGCATGGGT+TGG + chr4.4:27893859-27893878 None:intergenic 30.0%
CGTGCAAAATTAATTCATGT+AGG + chr4.4:27890495-27890514 None:intergenic 30.0%
GACGATTATTATGAGATAGA+GGG + chr4.4:27892577-27892596 None:intergenic 30.0%
GCACTTAATAATTATTGGAG+AGG + chr4.4:27893806-27893825 None:intergenic 30.0%
GCTAAGTTTCAAAATCATCA+TGG - chr4.4:27892137-27892156 MS.gene006950:intron 30.0%
TAAATATTGCATTGCTAGAC+AGG + chr4.4:27892615-27892634 None:intergenic 30.0%
TAGAAATATAGCATCTCTCA+TGG + chr4.4:27891051-27891070 None:intergenic 30.0%
TTTCTCATTAAACATACCGT+AGG - chr4.4:27893657-27893676 MS.gene006950:CDS 30.0%
! AAGTGATTTTGAGCTAAAGA+AGG - chr4.4:27892528-27892547 MS.gene006950:intron 30.0%
! ATCATGGATTTGTTTGTTGA+AGG - chr4.4:27892153-27892172 MS.gene006950:intron 30.0%
! GGCATCAATGACTAATTTTT+CGG + chr4.4:27894692-27894711 None:intergenic 30.0%
! TAATTACTGGGTTTAAAGTG+TGG + chr4.4:27890936-27890955 None:intergenic 30.0%
! TGGTAAAAGAAAGATTTTGG+AGG + chr4.4:27890961-27890980 None:intergenic 30.0%
! TTGAGTTGTCTACTTTCATT+TGG + chr4.4:27893716-27893735 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr4.4:27893456-27893475 MS.gene006950:intron 30.0%
!! AAGCAACACTCATTTTGAAA+CGG - chr4.4:27894349-27894368 MS.gene006950:intron 30.0%
!! GATTTTGGAGGTATAATTAC+TGG + chr4.4:27890949-27890968 None:intergenic 30.0%
!! TTAATATTTTGGACACATGC+AGG - chr4.4:27894437-27894456 MS.gene006950:intron 30.0%
!! TTCAAAATGAGTGTTGCTTT+AGG + chr4.4:27894348-27894367 None:intergenic 30.0%
!!! CAATTTTTGAAGTTAGGCAA+GGG - chr4.4:27892314-27892333 MS.gene006950:intron 30.0%
!!! TCAATTTTTGAAGTTAGGCA+AGG - chr4.4:27892313-27892332 MS.gene006950:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr4.4:27893455-27893474 None:intergenic 30.0%
!!! TTTTTCTGAAGCTTTCTTCA+AGG + chr4.4:27890912-27890931 None:intergenic 30.0%
AAACAGTGTCCTCAAGTTAA+TGG + chr4.4:27893582-27893601 None:intergenic 35.0%
AAAGACACAAACATGAAGAG+AGG + chr4.4:27889964-27889983 None:intergenic 35.0%
AAGACACAAACATGAAGAGA+GGG + chr4.4:27889963-27889982 None:intergenic 35.0%
ACAAAGATAATATGGCGAAG+AGG + chr4.4:27891842-27891861 None:intergenic 35.0%
ACACATATTGAAGTCGATTG+AGG + chr4.4:27891251-27891270 None:intergenic 35.0%
ACATAAACCTTGCCATATGT+AGG + chr4.4:27891993-27892012 None:intergenic 35.0%
AGCAAGACCCTTACATTAAT+AGG - chr4.4:27893602-27893621 MS.gene006950:CDS 35.0%
AGGCAATTGCACATAGATTA+AGG + chr4.4:27894328-27894347 None:intergenic 35.0%
ATCCTTAATCATTGCCATTG+GGG + chr4.4:27893180-27893199 None:intergenic 35.0%
ATGGGAATGTTCTCTTAGAT+AGG - chr4.4:27892347-27892366 MS.gene006950:intron 35.0%
ATTCTTCTTCTACGGTTACT+CGG + chr4.4:27890801-27890820 None:intergenic 35.0%
GAAACGGAGTGAGTATTATT+GGG + chr4.4:27893938-27893957 None:intergenic 35.0%
GATCCTTAATCATTGCCATT+GGG + chr4.4:27893181-27893200 None:intergenic 35.0%
GGTCTTTAACTGAACAAAAC+CGG - chr4.4:27894512-27894531 MS.gene006950:intron 35.0%
TATTATTCTCCTAGGGTTTG+CGG - chr4.4:27891862-27891881 MS.gene006950:intron 35.0%
TGAAACGGAGTGAGTATTAT+TGG + chr4.4:27893939-27893958 None:intergenic 35.0%
TGCAAGGATGGTACAATAAA+AGG + chr4.4:27892970-27892989 None:intergenic 35.0%
TTTCAAGAACATGAACAGCT+AGG + chr4.4:27892226-27892245 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr4.4:27893325-27893344 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr4.4:27893321-27893340 None:intergenic 35.0%
!! TGCGGAGTGTTATCTATTTT+GGG - chr4.4:27891880-27891899 MS.gene006950:intron 35.0%
!! TTGCGGAGTGTTATCTATTT+TGG - chr4.4:27891879-27891898 MS.gene006950:intron 35.0%
!!! GACACTCATTTTGAAACAGA+GGG + chr4.4:27893217-27893236 None:intergenic 35.0%
AAACTCCATAAACACGGACA+CGG + chr4.4:27893750-27893769 None:intergenic 40.0%
AAAGAGAAGTTGAGGAGCTT+AGG - chr4.4:27894542-27894561 MS.gene006950:intron 40.0%
AACCGTAGAAGAAGAATGGA+TGG - chr4.4:27890804-27890823 MS.gene006950:intron 40.0%
AAGAGAAGTTGAGGAGCTTA+GGG - chr4.4:27894543-27894562 MS.gene006950:intron 40.0%
AAGGTCATGTAAATGGGTCT+TGG + chr4.4:27890981-27891000 None:intergenic 40.0%
AATACCTGAAGAGGTGGTTT+GGG - chr4.4:27894491-27894510 MS.gene006950:intron 40.0%
ACAAGGAATGTATGCCACAT+GGG - chr4.4:27893087-27893106 MS.gene006950:intron 40.0%
AGATATGGTCAATTCCAAGC+TGG + chr4.4:27889807-27889826 None:intergenic 40.0%
AGTATGTGGGAACCCTTTAT+AGG + chr4.4:27890179-27890198 None:intergenic 40.0%
CAAGAAACTGCGTCTAACAA+AGG - chr4.4:27890873-27890892 MS.gene006950:intron 40.0%
CACATTGATAAGGTTGAAGC+TGG + chr4.4:27894622-27894641 None:intergenic 40.0%
CATTAAGGAGAATGGTAACC+AGG - chr4.4:27893153-27893172 MS.gene006950:intron 40.0%
CTTTAACTGAACAAAACCGG+AGG - chr4.4:27894515-27894534 MS.gene006950:intron 40.0%
GAAGAAGAAAGCAGCGTTAA+TGG - chr4.4:27890838-27890857 MS.gene006950:intron 40.0%
GAAGCTTTCTTCAAGGAGAT+GGG + chr4.4:27890905-27890924 None:intergenic 40.0%
GAATTGACCATATCTATCCC+AGG - chr4.4:27889812-27889831 MS.gene006950:CDS 40.0%
GAGAGAGTCAGAAACAAAGT+TGG - chr4.4:27892878-27892897 MS.gene006950:intron 40.0%
GAGTAACCGTAGAAGAAGAA+TGG - chr4.4:27890800-27890819 MS.gene006950:intron 40.0%
GATCAGTCATGATGAGAAGT+TGG + chr4.4:27891229-27891248 None:intergenic 40.0%
GATGAGGGGAGAAAAGAAAT+TGG + chr4.4:27889851-27889870 None:intergenic 40.0%
GGATCCTTAATCATTGCCAT+TGG + chr4.4:27893182-27893201 None:intergenic 40.0%
GGTAAAATTACTACTCCCTC+CGG - chr4.4:27894138-27894157 MS.gene006950:intron 40.0%
GTTATCTGATTCCAAGTCGA+TGG + chr4.4:27892204-27892223 None:intergenic 40.0%
TACAAGGAATGTATGCCACA+TGG - chr4.4:27893086-27893105 MS.gene006950:intron 40.0%
TATAGCATCTCTCATGGACA+TGG + chr4.4:27891045-27891064 None:intergenic 40.0%
TGAAGCTTTCTTCAAGGAGA+TGG + chr4.4:27890906-27890925 None:intergenic 40.0%
TGAAGGTTTGACCATTGATG+AGG - chr4.4:27892170-27892189 MS.gene006950:intron 40.0%
TGCCATCCATTCTTCTTCTA+CGG + chr4.4:27890809-27890828 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr4.4:27894273-27894292 MS.gene006950:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr4.4:27894292-27894273 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr4.4:27894272-27894291 MS.gene006950:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr4.4:27894291-27894272 None:intergenic 40.0%
TTTATCCCACAGCAATCCTA+CGG + chr4.4:27893676-27893695 None:intergenic 40.0%
! ATGGCTATGTTTTCCTGGTT+TGG - chr4.4:27891955-27891974 MS.gene006950:intron 40.0%
! GGGTGTTACAGTGAAAAAGT+TGG - chr4.4:27890768-27890787 MS.gene006950:intron 40.0%
! GTCTAAAGCATGAAATCGAG+TGG + chr4.4:27893837-27893856 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr4.4:27893322-27893341 None:intergenic 40.0%
! TCAAGTTGCAAACCCTAATC+TGG - chr4.4:27892046-27892065 MS.gene006950:intron 40.0%
! TGCTACTTACCAGATGATGA+GGG + chr4.4:27889866-27889885 None:intergenic 40.0%
!! ACAGAAGCAGAAAGAGTGTT+TGG - chr4.4:27891113-27891132 MS.gene006950:intron 40.0%
!! ATAGAGGATTAGCCTTTACC+TGG + chr4.4:27891196-27891215 None:intergenic 40.0%
!!! AACAGAGGGAGTACTTGTTT+TGG + chr4.4:27893203-27893222 None:intergenic 40.0%
!!! CGACACTCATTTTGAAACAG+AGG + chr4.4:27893218-27893237 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr4.4:27893460-27893479 MS.gene006950:intron 40.0%
AAAAATGACACGTGACGACG+TGG + chr4.4:27893055-27893074 None:intergenic 45.0%
AACATACCGTAGGATTGCTG+TGG - chr4.4:27893667-27893686 MS.gene006950:CDS 45.0%
AAGACACACGCTACTCACAA+GGG + chr4.4:27891933-27891952 None:intergenic 45.0%
ACATACCGTAGGATTGCTGT+GGG - chr4.4:27893668-27893687 MS.gene006950:CDS 45.0%
ACATCGGGGACACATTGATA+AGG + chr4.4:27894632-27894651 None:intergenic 45.0%
AGAATGGATGGCACTAGAAG+AGG - chr4.4:27890816-27890835 MS.gene006950:intron 45.0%
AGCAAAGCCTGGGATAGATA+TGG + chr4.4:27889822-27889841 None:intergenic 45.0%
AGGCAAGGGTTTGACATTCA+TGG - chr4.4:27892328-27892347 MS.gene006950:intron 45.0%
AGGTGTGGTTTCAAAACCGT+AGG - chr4.4:27891169-27891188 MS.gene006950:intron 45.0%
AGGTTTGACCATTGATGAGG+AGG - chr4.4:27892173-27892192 MS.gene006950:intron 45.0%
ATTGGTGAAGAAGCAAAGCC+TGG + chr4.4:27889833-27889852 None:intergenic 45.0%
CAACTTCTCTTTGTAGCCTC+CGG + chr4.4:27894534-27894553 None:intergenic 45.0%
CAAGGAATGTATGCCACATG+GGG - chr4.4:27893088-27893107 MS.gene006950:intron 45.0%
CGTATGCATCAGCCTACATA+TGG - chr4.4:27891978-27891997 MS.gene006950:intron 45.0%
CTGTGAGGAGATAACACAGT+AGG + chr4.4:27894586-27894605 None:intergenic 45.0%
GAATACCTGAAGAGGTGGTT+TGG - chr4.4:27894490-27894509 MS.gene006950:intron 45.0%
GACCCCAATGGCAATGATTA+AGG - chr4.4:27893175-27893194 MS.gene006950:intron 45.0%
GAGAGAGTCAGAGACAAAGT+TGG - chr4.4:27893015-27893034 MS.gene006950:intron 45.0%
GAGGCTACAAAGAGAAGTTG+AGG - chr4.4:27894534-27894553 MS.gene006950:intron 45.0%
GATAAGGTTGAAGCTGGAAG+AGG + chr4.4:27894616-27894635 None:intergenic 45.0%
GCATGAAATCGAGTGGTCAA+AGG + chr4.4:27893830-27893849 None:intergenic 45.0%
GCTACTTACCAGATGATGAG+GGG + chr4.4:27889865-27889884 None:intergenic 45.0%
GGCAAGGGTTTGACATTCAT+GGG - chr4.4:27892329-27892348 MS.gene006950:intron 45.0%
GGTGTGGTTTCAAAACCGTA+GGG - chr4.4:27891170-27891189 MS.gene006950:intron 45.0%
GTCAAATGTCATACTCCCTC+CGG + chr4.4:27894291-27894310 None:intergenic 45.0%
TATGGTCAATTCCAAGCTGG+AGG + chr4.4:27889804-27889823 None:intergenic 45.0%
TCAGAAAGCTTTGCAAAGCG+TGG + chr4.4:27892100-27892119 None:intergenic 45.0%
TCTTCTCCCTAGTGTCACAT+GGG + chr4.4:27892860-27892879 None:intergenic 45.0%
TGAGGAGATAACACAGTAGG+TGG + chr4.4:27894583-27894602 None:intergenic 45.0%
TGGTCAAACCTCCTCATCAA+TGG + chr4.4:27892184-27892203 None:intergenic 45.0%
TTGGGTCGTCGTGTTCAATT+GGG - chr4.4:27891898-27891917 MS.gene006950:intron 45.0%
TTGGTGAAGAAGCAAAGCCT+GGG + chr4.4:27889832-27889851 None:intergenic 45.0%
TTTGCAAAGCGTGGTGCTTT+GGG + chr4.4:27892091-27892110 None:intergenic 45.0%
TTTGGGTCGTCGTGTTCAAT+TGG - chr4.4:27891897-27891916 MS.gene006950:intron 45.0%
! CAAGTTGAAGCAGACAGAGA+TGG - chr4.4:27894462-27894481 MS.gene006950:intron 45.0%
! CACTCTAGGGGACAAAATGA+CGG + chr4.4:27894713-27894732 None:intergenic 45.0%
! CTTGCATGGCTATGTTTTCC+TGG - chr4.4:27891950-27891969 MS.gene006950:intron 45.0%
! TCTTTTCTCCCCTCATCATC+TGG - chr4.4:27889854-27889873 MS.gene006950:CDS 45.0%
!! ACAAAGTTGGTGAGTGTGTG+GGG - chr4.4:27892891-27892910 MS.gene006950:intron 45.0%
!! AGACAAAGTTGGTGAGTGTG+TGG - chr4.4:27893026-27893045 MS.gene006950:intron 45.0%
!! GACAAAGTTGGTGAGTGTGT+GGG - chr4.4:27893027-27893046 MS.gene006950:intron 45.0%
!! GTGCTACTTACCAGATGATG+AGG + chr4.4:27889867-27889886 None:intergenic 45.0%
!! GTGGTGCTTTGGGAATGATT+CGG + chr4.4:27892081-27892100 None:intergenic 45.0%
!! TAATTTTTCGGCAGCGACTG+TGG + chr4.4:27894680-27894699 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr4.4:27893459-27893478 MS.gene006950:intron 45.0%
!!! AAAAAAAAAATCAAAATTTT+GGG + chr4.4:27891663-27891682 None:intergenic 5.0%
!!! TAAAAAAAAAATCAAAATTT+TGG + chr4.4:27891664-27891683 None:intergenic 5.0%
AAAACCGTAGGGCCAGGTAA+AGG - chr4.4:27891181-27891200 MS.gene006950:intron 50.0%
AAGACCCAAACCACCTCTTC+AGG + chr4.4:27894498-27894517 None:intergenic 50.0%
AATCATTGCCATTGGGGTCC+TGG + chr4.4:27893174-27893193 None:intergenic 50.0%
AATGGTAACCAGGACCCCAA+TGG - chr4.4:27893163-27893182 MS.gene006950:intron 50.0%
ACCTACAAGTTCCTCCAGCT+TGG - chr4.4:27889790-27889809 MS.gene006950:CDS 50.0%
AGTGCGAATACCTGAAGAGG+TGG - chr4.4:27894485-27894504 MS.gene006950:intron 50.0%
CAAGACACACGCTACTCACA+AGG + chr4.4:27891934-27891953 None:intergenic 50.0%
CGGAATGCGCATCCAGATTA+GGG + chr4.4:27892061-27892080 None:intergenic 50.0%
CTCTTCTCCCTAGTGTCACA+TGG + chr4.4:27892861-27892880 None:intergenic 50.0%
CTTCTCCCTAGTGTCACATG+GGG + chr4.4:27892859-27892878 None:intergenic 50.0%
CTTTGCAAAGCGTGGTGCTT+TGG + chr4.4:27892092-27892111 None:intergenic 50.0%
GATAACACTCCGCAAACCCT+AGG + chr4.4:27891874-27891893 None:intergenic 50.0%
GCATCAGCCTACATATGGCA+AGG - chr4.4:27891983-27892002 MS.gene006950:intron 50.0%
GGAGCTTAGGGCTATGAAGA+TGG - chr4.4:27894555-27894574 MS.gene006950:intron 50.0%
GTTAGACGCAGTTTCTTGCG+AGG + chr4.4:27890871-27890890 None:intergenic 50.0%
TACACCCCCATGTGACACTA+GGG - chr4.4:27892851-27892870 MS.gene006950:intron 50.0%
TCCAAGCTGGAGGAACTTGT+AGG + chr4.4:27889794-27889813 None:intergenic 50.0%
TCGGAATGCGCATCCAGATT+AGG + chr4.4:27892062-27892081 None:intergenic 50.0%
TCTTCTCCCTAGTGCCACAT+GGG + chr4.4:27892997-27893016 None:intergenic 50.0%
TGAGTAGCGTGTGTCTTGCA+TGG - chr4.4:27891936-27891955 MS.gene006950:intron 50.0%
TGGAGTGCGAATACCTGAAG+AGG - chr4.4:27894482-27894501 MS.gene006950:intron 50.0%
TTCTCCCTAGTGTCACATGG+GGG + chr4.4:27892858-27892877 None:intergenic 50.0%
! AGGAGGTTTGACCATCGACT+TGG - chr4.4:27892190-27892209 MS.gene006950:intron 50.0%
! TTAGCCTTTACCTGGCCCTA+CGG + chr4.4:27891188-27891207 None:intergenic 50.0%
AACCACACCTCCACTTGCCT+TGG + chr4.4:27891159-27891178 None:intergenic 55.0%
ACACCTCCACTTGCCTTGGT+CGG + chr4.4:27891155-27891174 None:intergenic 55.0%
CAGCACCGTGTCCGTGTTTA+TGG - chr4.4:27893742-27893761 MS.gene006950:intron 55.0%
CTCTTCTCCCTAGTGCCACA+TGG + chr4.4:27892998-27893017 None:intergenic 55.0%
CTTCTCCCTAGTGCCACATG+GGG + chr4.4:27892996-27893015 None:intergenic 55.0%
GCTGATGCATACGCCAAACC+AGG + chr4.4:27891971-27891990 None:intergenic 55.0%
GGAAGAGGCTCAGAACTGTG+AGG + chr4.4:27894601-27894620 None:intergenic 55.0%
GGAATGTATGCCACATGGGG+TGG - chr4.4:27893091-27893110 MS.gene006950:intron 55.0%
GGTTTCAAAACCGTAGGGCC+AGG - chr4.4:27891175-27891194 MS.gene006950:intron 55.0%
GTACACCCCCATGTGACACT+AGG - chr4.4:27892850-27892869 MS.gene006950:intron 55.0%
TAAGCTCCGACCAAGGCAAG+TGG - chr4.4:27891146-27891165 MS.gene006950:intron 55.0%
TGCAGCTTAAGCTCCGACCA+AGG - chr4.4:27891139-27891158 MS.gene006950:intron 55.0%
TTCTCCCTAGTGCCACATGG+GGG + chr4.4:27892995-27893014 None:intergenic 55.0%
! CACATGGGGGTGTACAAGGA+TGG + chr4.4:27892845-27892864 None:intergenic 55.0%
! GATAGGTTGACCACCCCATG+TGG + chr4.4:27893104-27893123 None:intergenic 55.0%
! GTGTCACATGGGGGTGTACA+AGG + chr4.4:27892849-27892868 None:intergenic 55.0%
! TAAACACGGACACGGTGCTG+TGG + chr4.4:27893742-27893761 None:intergenic 55.0%
! TGGTGGTGACACGCTCACAT+CGG + chr4.4:27894648-27894667 None:intergenic 55.0%
!! TTTTTCGGCAGCGACTGTGG+CGG + chr4.4:27894677-27894696 None:intergenic 55.0%
AGCGACTGTGGCGGTGGTAT+TGG + chr4.4:27894668-27894687 None:intergenic 60.0%
CACACCCCCATGTGGCACTA+GGG - chr4.4:27892988-27893007 MS.gene006950:intron 60.0%
CATCCTTGCACACCCCCATG+TGG - chr4.4:27892980-27892999 MS.gene006950:intron 60.0%
GACCAAGGCAAGTGGAGGTG+TGG - chr4.4:27891154-27891173 MS.gene006950:intron 60.0%
GGTGGTGACACGCTCACATC+GGG + chr4.4:27894647-27894666 None:intergenic 60.0%
GTGGTGACACGCTCACATCG+GGG + chr4.4:27894646-27894665 None:intergenic 60.0%
! CACATGGGGGTGTGCAAGGA+TGG + chr4.4:27892982-27893001 None:intergenic 60.0%
! GACTGTGGCGGTGGTATTGG+TGG + chr4.4:27894665-27894684 None:intergenic 60.0%
GCACACCCCCATGTGGCACT+AGG - chr4.4:27892987-27893006 MS.gene006950:intron 65.0%
GCTCCGACCAAGGCAAGTGG+AGG - chr4.4:27891149-27891168 MS.gene006950:intron 65.0%
! GTGCCACATGGGGGTGTGCA+AGG + chr4.4:27892986-27893005 None:intergenic 65.0%
TTCGGCAGCGACTGTGGCGG+TGG + chr4.4:27894674-27894693 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 27889779 27894735 27889779 ID=MS.gene006950
chr4.4 mRNA 27889779 27894735 27889779 ID=MS.gene006950.t1;Parent=MS.gene006950
chr4.4 exon 27894639 27894735 27894639 ID=MS.gene006950.t1.exon1;Parent=MS.gene006950.t1
chr4.4 CDS 27894639 27894735 27894639 ID=cds.MS.gene006950.t1;Parent=MS.gene006950.t1
chr4.4 exon 27893566 27893735 27893566 ID=MS.gene006950.t1.exon2;Parent=MS.gene006950.t1
chr4.4 CDS 27893566 27893735 27893566 ID=cds.MS.gene006950.t1;Parent=MS.gene006950.t1
chr4.4 exon 27893318 27893397 27893318 ID=MS.gene006950.t1.exon3;Parent=MS.gene006950.t1
chr4.4 CDS 27893318 27893397 27893318 ID=cds.MS.gene006950.t1;Parent=MS.gene006950.t1
chr4.4 exon 27889779 27890055 27889779 ID=MS.gene006950.t1.exon4;Parent=MS.gene006950.t1
chr4.4 CDS 27889779 27890055 27889779 ID=cds.MS.gene006950.t1;Parent=MS.gene006950.t1
Gene Sequence

>MS.gene006950

ATGGCAGTTTTACCTACAAGTTCCTCCAGCTTGGAATTGACCATATCTATCCCAGGCTTTGCTTCTTCACCAATTTCTTTTCTCCCCTCATCATCTGGTAAGTAGCACTTCTTAATTTCTTGCCTTTTGCATCTTTGTCTAGTATCACAATCTTCTTGTTCATCTTTTGTCATTTTGATAACCCTCTCTTCATGTTTGTGTCTTTTTTTAATTCTACGTAATTTTTTAAATTTCATTTATTTTACCATTATTGGTTTCATTTTTTAAATAAATATTTGTAACTTCTCTAAAAATAAAATTAAAACAATGATCGGATATATATGAATGTTCCACTACAGTTGTGTTTTTTTATCCCTTAAATTTATTATTTTTATAACAAAAAGTTAATATTAAACGGCCTATAAAGGGTTCCCACATACTTATTTTTTTCTTCTTCTTGAGGATATATAATATACGTGATATAACTTCCTAAAGCAAATATAGGTAAAATGATAACTTCCTAATATACAATTTTTTACTTTTAATCCTTATTTTTTTCAGTCATTGTAAGATATATCACTTTTACTTTTGATCTTTATTGTTTTTTTAGGAAATCTTTATTGTTTTTTATTTGTGTAAAATTTGTTCATATTCAAATTGATCAATATAATATATGTTTTTGTCTTTTTTTAGAGATTAACTAAGATAAAATATTCAAATTATAGAGACTAATACCTACATGAATTAATTTTGCACGAACAAAAATAAAATAACAATGATCAAAAGAATAAAAATGTTATATTTGAAATAAAATAAAAACAAATTATAGAGATCAAAAATAAAAAAATGATATATTTGTCGGGACGAAAACATATATCTAAATTTTTTGTTATGATATTTCCAACTAGTACCTAAAGTTTTTTTTTGAGAGGAATTAGTTCCTAAAGTTAGATATATAATATATTGAGTTTGTAATCCTATAAAGAATTATGAATTTTTGTTGGGAAATTGGGTGTTACAGTGAAAAAGTTGGATGTGAACCGAGTAACCGTAGAAGAAGAATGGATGGCACTAGAAGAGGAAGAAGAAAGCAGCGTTAATGGAGACACTCCTCGCAAGAAACTGCGTCTAACAAAGGAACAGTCCCATCTCCTTGAAGAAAGCTTCAGAAAAAACCACACTTTAAACCCAGTAATTATACCTCCAAAATCTTTCTTTTACCAAGACCCATTTACATGACCTTAATTTATTCATATTTTCTTCTTTTCTCATGTATAATATTTACCATGTCCATGAGAGATGCTATATTTCTACTACTTTTCCTTAATTAATATGCATATAATTGGTTTTGCACTACAGAAGCAGAAAGAGTGTTTGGCAATGCAGCTTAAGCTCCGACCAAGGCAAGTGGAGGTGTGGTTTCAAAACCGTAGGGCCAGGTAAAGGCTAATCCTCTATATATTAGCTTCCAACTTCTCATCATGACTGATCCTCAATCGACTTCAATATGTGTGTGTGTGTGTGTGTAAGAGTATACAAATATTAAAATAGTATTTGTTTACCTAATTAAGACTATATATGAAAAATTAACAATTAGCTCACTTAATTAAGGTATGAGTATTTTATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTACATGAGTAGAGTTTTGAATTTTGTTTAGTAATAAAATGTTAGGTCAATATCCGATGAAAAAGAATTGAAAAGATTTGTAACTTACTAAAACATAGTAAGTTGTATGATTTTGATGGTCAAATTTTATTTATTTAAAAAATAAAAATAATTAAAATAACACTAACAGTTGAATTAAAATCAAACTGTTTTTTTTTTGTCAAAATTACACAATTCGTCCCAAAATTTTGATTTTTTTTTTATAAAAAAGAACAATTATGTTGACATTCTATAACATAAAGGACTAAATTAAAAAAGAAAAGATAAAGTACGAAAGTGTTACCTAAAATTAAATTAAGAGATGAATTATATAATTGTCTTTTTTCTAAAAAAAAAATTGTGTAAGATTATCATAGATCCTCTTCGCCATATTATCTTTGTTATTATTCTCCTAGGGTTTGCGGAGTGTTATCTATTTTGGGTCGTCGTGTTCAATTGGGCTGTCGTCGCCCTTGTGAGTAGCGTGTGTCTTGCATGGCTATGTTTTCCTGGTTTGGCGTATGCATCAGCCTACATATGGCAAGGTTTATGTTAAGTTTTCATGGATCACCAAAAAAACGCAAAATCAAGTTGCAAACCCTAATCTGGATGCGCATTCCGAATCATTCCCAAAGCACCACGCTTTGCAAAGCTTTCTGATTTATATTTATGTTGCAGCTAAGTTTCAAAATCATCATGGATTTGTTTGTTGAAGGTTTGACCATTGATGAGGAGGTTTGACCATCGACTTGGAATCAGATAACCTAGCTGTTCATGTTCTTGAAAATTGTTTGATTGGTCTCGTCTTGACTGACAAACATATTCGAGCCAAATATTTTCAAGAACGAATGAGTCAATTTTTGAAGTTAGGCAAGGGTTTGACATTCATGGGAATGTTCTCTTAGATAGGACGATTTATATTAAAATTCACTGAAAATAATAATGTTTTTATGAACCGGGTTCATATTCATAATTTTATCCAAGTTAAAGAAGTTAAAACAATGACAAAATTTGCAAGTAATAAAATTAGCAATTAATAATGATAACATTTAAGGAGTTGCATGGTTCAAGTGATTTTGAGCTAAAGAAGGTACATTTTGAATTAAAACTTACTCCCTCTATCTCATAATAATCGTCTCTTTAACATTTTTACCTGTCTAGCAATGCAATATTTATTATTATTTTTCCACTATTATACTCTTATTTATTGAATTTCATCAAACTTAACCACTCCACTAACTATAATTAATAAGGGTATTTTAGTAAATGAAACTAATTTTATCATTGAAATCAATACAATTAATTATTTTTTAATAGTCATGCACAAACTTTAAACGACTATTATTGTGGATTAATGATAAGTTGACATCCTTTTTTTTGTACCATCCTTGTACACCCCCATGTGACACTAGGGAGAAGAGAGAGTCAGAAACAAAGTTGGTGAGTGTGTGATAGTCGTTCACAAACTTTAAACGACTATTATTGTGGATTAATTATAAGTTGACATCCTTTTATTGTACCATCCTTGCACACCCCCATGTGGCACTAGGGAGAAGAGAGAGTCAGAGACAAAGTTGGTGAGTGTGTGGGGACCACGTCGTCACGTGTCATTTTTATGTGTGAAAGTACAAGGAATGTATGCCACATGGGGTGGTCAACCTATCATTGCTTTTATTATAAGACAAAGGAATTACATTAAGGAGAATGGTAACCAGGACCCCAATGGCAATGATTAAGGATCCAAAACAAGTACTCCCTCTGTTTCAAAATGAGTGTCGCTTTAGCCAAAAAAATTTGTTTCAAAATGAGTGTCGCTTTCAGTTTCCAATGCAATAATAACTTTTTCTTTTCAATTGTACCCTCCAATTAATACTCTGCACACTACTTCCAAAGTATTACTTTTAAAACTAACCAATAGTTAATAAGGATAATTTGGTAAAATAACCATTCTCTTTCTCTTAATCATTGCATTTCTTAATAAGTGTGTAAACGCCTAAAACGACACTCATTTTGAAACGGAGGGAGTAAGTTTTTATAAAAAAGTTGTGTAATCATTATTTTATCAAAAGTAACATCATATATTTCCAAGATAAAATTTCTATTTGTATAGATTTTTTAACCATTAACTTGAGGACACTGTTTAGCAAGACCCTTACATTAATAGGTTAAATATTAATTTAACAATTAACTAATGATATTTCTCATTAAACATACCGTAGGATTGCTGTGGGATAAAAGCATAATCATTGTTGTCCAAATGAAAGTAGACAACTCAATAACCACAGCACCGTGTCCGTGTTTATGGAGTTTTATTAAGCCTCGTGTGCTACACTACACTGATCACCTCTCCAATAATTATTAAGTGCACCTTTGACCACTCGATTTCATGCTTTAGACCAACCCATGCATTTATAATCATCATGAAATAACTCATCATTCATCGACAAGTATCCATAAAAAGTGATTACTTACACACCCAATAATACTCACTCCGTTTCAAAATAAGTGTCGTTTTAGCCAAAAAAATTTGTTTCAAAATGAATGTCACTTTCAGTTTTCAATGCAATAATAACTTTTTCTTTTCAATTGTACCCTTCAATTAATACTATGTTACACTACTTCCAAAATATTATTCTTTCTTTAATAAAAAACAAACCAATAGTTGATTATGATAATTTGGTAAAATTACTACTCCCTCCGGTCACTATTATAAGCAAATTTCTACTTTTTAGATTCATTCAATAAATGATGTATGTGGTCTATATTGTAGACCACATACATCATTTATTGAATGAACCTAAAAAGTCAAAATTTGCTTATAATAGTGACCGGAGGGAGTATGACATTTGACTACTTTATTCAATTCCTTAATCTATGTGCAATTGCCTAAAGCAACACTCATTTTGAAACGGAGTGAGTAATAAAAATTACATTTCATAATAACCATATCATCATTTTAATCAATGTGTACGTTGAATTAATATTTTGGACACATGCAGGAGCAAGTTGAAGCAGACAGAGATGGAGTGCGAATACCTGAAGAGGTGGTTTGGGTCTTTAACTGAACAAAACCGGAGGCTACAAAGAGAAGTTGAGGAGCTTAGGGCTATGAAGATGGATCCACCTACTGTGTTATCTCCTCACAGTTCTGAGCCTCTTCCAGCTTCAACCTTATCAATGTGTCCCCGATGTGAGCGTGTCACCACCAATACCACCGCCACAGTCGCTGCCGAAAAATTAGTCATTGATGCCGTCATTTTGTCCCCTAGAGTGTGA
Protein sequence

>MS.gene006950.t1

MAVLPTSSSSLELTISIPGFASSPISFLPSSSVKKLDVNRVTVEEEWMALEEEEESSVNGDTPRKKLRLTKEQSHLLEESFRKNHTLNPKQKECLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKMDPPTVLSPHSSEPLPASTLSMCPRCERVTTNTTATVAAEKLVIDAVILSPRV