Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006986.t1 | XP_003625866.1 | 94.1 | 372 | 22 | 0 | 1 | 372 | 1 | 372 | 2.30E-163 | 585.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006986.t1 | O82256 | 46.6 | 365 | 143 | 7 | 14 | 369 | 7 | 328 | 1.3e-50 | 201.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006986.t1 | G7KQZ2 | 94.1 | 372 | 22 | 0 | 1 | 372 | 1 | 372 | 1.6e-163 | 585.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene006986.t1 | TF | C2C2-CO-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006986.t1 | MTR_7g108150 | 96.505 | 372 | 13 | 0 | 1 | 372 | 1 | 372 | 0.0 | 745 |
| MS.gene006986.t1 | MTR_1g013450 | 28.169 | 355 | 186 | 13 | 20 | 369 | 6 | 296 | 5.91e-30 | 117 |
| MS.gene006986.t1 | MTR_3g082630 | 50.000 | 100 | 50 | 0 | 20 | 119 | 5 | 104 | 1.62e-29 | 118 |
| MS.gene006986.t1 | MTR_3g082630 | 55.000 | 60 | 24 | 1 | 310 | 369 | 339 | 395 | 6.76e-12 | 66.6 |
| MS.gene006986.t1 | MTR_5g069480 | 48.515 | 101 | 51 | 1 | 20 | 119 | 5 | 105 | 6.21e-29 | 114 |
| MS.gene006986.t1 | MTR_7g083540 | 45.255 | 137 | 57 | 4 | 19 | 148 | 4 | 129 | 7.85e-29 | 115 |
| MS.gene006986.t1 | MTR_7g083540 | 46.914 | 81 | 42 | 1 | 290 | 369 | 302 | 382 | 8.86e-14 | 72.4 |
| MS.gene006986.t1 | MTR_5g069480 | 48.515 | 101 | 51 | 1 | 20 | 119 | 5 | 105 | 1.13e-28 | 115 |
| MS.gene006986.t1 | MTR_2g088900 | 45.000 | 100 | 54 | 1 | 20 | 119 | 101 | 199 | 6.07e-21 | 94.7 |
| MS.gene006986.t1 | MTR_1g109350 | 37.736 | 106 | 64 | 1 | 18 | 123 | 3 | 106 | 2.84e-20 | 91.3 |
| MS.gene006986.t1 | MTR_7g018170 | 36.283 | 113 | 64 | 3 | 18 | 126 | 24 | 132 | 1.82e-18 | 86.7 |
| MS.gene006986.t1 | MTR_3g105710 | 40.449 | 89 | 52 | 1 | 20 | 107 | 6 | 94 | 1.55e-17 | 82.4 |
| MS.gene006986.t1 | MTR_4g128930 | 40.449 | 89 | 52 | 1 | 20 | 107 | 22 | 110 | 1.74e-17 | 83.6 |
| MS.gene006986.t1 | MTR_4g128930 | 41.176 | 68 | 40 | 0 | 302 | 369 | 272 | 339 | 3.10e-11 | 64.7 |
| MS.gene006986.t1 | MTR_4g067320 | 43.478 | 92 | 42 | 2 | 20 | 101 | 5 | 96 | 1.25e-15 | 75.9 |
| MS.gene006986.t1 | MTR_4g067320 | 43.478 | 92 | 42 | 2 | 20 | 101 | 5 | 96 | 1.38e-15 | 75.9 |
| MS.gene006986.t1 | MTR_1g023260 | 35.354 | 99 | 53 | 2 | 20 | 107 | 5 | 103 | 9.37e-14 | 69.7 |
| MS.gene006986.t1 | MTR_1g023260 | 35.354 | 99 | 53 | 2 | 20 | 107 | 5 | 103 | 1.63e-13 | 70.5 |
| MS.gene006986.t1 | MTR_5g021580 | 38.750 | 80 | 41 | 1 | 20 | 91 | 5 | 84 | 2.67e-13 | 68.2 |
| MS.gene006986.t1 | MTR_5g021580 | 38.750 | 80 | 41 | 1 | 20 | 91 | 5 | 84 | 2.90e-13 | 68.2 |
| MS.gene006986.t1 | MTR_2g099010 | 39.796 | 98 | 49 | 2 | 20 | 107 | 5 | 102 | 4.45e-13 | 68.6 |
| MS.gene006986.t1 | MTR_2g099010 | 39.796 | 98 | 49 | 2 | 20 | 107 | 5 | 102 | 4.47e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006986.t1 | AT2G47890 | 46.006 | 363 | 148 | 9 | 14 | 369 | 7 | 328 | 5.57e-95 | 287 |
| MS.gene006986.t1 | AT2G47890 | 42.136 | 337 | 147 | 9 | 14 | 343 | 7 | 302 | 5.91e-76 | 237 |
| MS.gene006986.t1 | AT2G47890 | 51.163 | 215 | 81 | 3 | 14 | 227 | 7 | 198 | 2.49e-71 | 223 |
| MS.gene006986.t1 | AT3G07650 | 30.933 | 375 | 211 | 14 | 20 | 369 | 5 | 356 | 9.00e-39 | 142 |
| MS.gene006986.t1 | AT3G07650 | 30.933 | 375 | 211 | 14 | 20 | 369 | 5 | 356 | 9.00e-39 | 142 |
| MS.gene006986.t1 | AT3G07650 | 30.933 | 375 | 211 | 14 | 20 | 369 | 5 | 356 | 9.00e-39 | 142 |
| MS.gene006986.t1 | AT3G07650 | 30.933 | 375 | 211 | 14 | 20 | 369 | 5 | 356 | 9.00e-39 | 142 |
| MS.gene006986.t1 | AT1G28050 | 35.897 | 195 | 103 | 6 | 19 | 209 | 8 | 184 | 4.29e-34 | 131 |
| MS.gene006986.t1 | AT1G28050 | 50.725 | 69 | 33 | 1 | 302 | 369 | 358 | 426 | 4.33e-13 | 70.5 |
| MS.gene006986.t1 | AT2G33500 | 51.351 | 111 | 53 | 1 | 19 | 128 | 11 | 121 | 1.68e-33 | 129 |
| MS.gene006986.t1 | AT2G33500 | 41.525 | 118 | 60 | 3 | 258 | 369 | 283 | 397 | 1.05e-15 | 78.2 |
| MS.gene006986.t1 | AT2G33500 | 51.351 | 111 | 53 | 1 | 19 | 128 | 11 | 121 | 1.72e-33 | 129 |
| MS.gene006986.t1 | AT2G33500 | 39.831 | 118 | 63 | 2 | 258 | 369 | 283 | 398 | 1.87e-15 | 77.8 |
| MS.gene006986.t1 | AT3G21880 | 31.165 | 369 | 210 | 13 | 20 | 369 | 5 | 348 | 9.04e-33 | 126 |
| MS.gene006986.t1 | AT3G21880 | 31.165 | 369 | 210 | 13 | 20 | 369 | 9 | 352 | 9.51e-33 | 126 |
| MS.gene006986.t1 | AT3G21880 | 31.165 | 369 | 210 | 13 | 20 | 369 | 9 | 352 | 9.51e-33 | 126 |
| MS.gene006986.t1 | AT5G48250 | 46.226 | 106 | 54 | 1 | 20 | 122 | 5 | 110 | 8.84e-29 | 115 |
| MS.gene006986.t1 | AT1G68190 | 38.679 | 106 | 64 | 1 | 18 | 123 | 12 | 116 | 2.04e-20 | 91.7 |
| MS.gene006986.t1 | AT1G68190 | 38.679 | 106 | 64 | 1 | 18 | 123 | 12 | 116 | 2.04e-20 | 91.7 |
| MS.gene006986.t1 | AT4G15250 | 42.000 | 100 | 57 | 1 | 20 | 119 | 5 | 103 | 2.26e-20 | 91.3 |
| MS.gene006986.t1 | AT1G68190 | 38.679 | 106 | 64 | 1 | 18 | 123 | 41 | 145 | 2.39e-20 | 92.0 |
| MS.gene006986.t1 | AT5G15840 | 43.011 | 93 | 52 | 1 | 18 | 109 | 18 | 110 | 8.83e-20 | 90.1 |
| MS.gene006986.t1 | AT5G15840 | 43.011 | 93 | 52 | 1 | 18 | 109 | 18 | 110 | 1.82e-19 | 87.8 |
| MS.gene006986.t1 | AT5G24930 | 40.449 | 89 | 52 | 1 | 20 | 107 | 6 | 94 | 4.13e-18 | 85.1 |
| MS.gene006986.t1 | AT5G24930 | 52.632 | 57 | 23 | 1 | 313 | 369 | 284 | 336 | 9.56e-11 | 63.2 |
| MS.gene006986.t1 | AT5G15850 | 42.045 | 88 | 50 | 1 | 18 | 104 | 10 | 97 | 4.23e-18 | 85.1 |
| MS.gene006986.t1 | AT5G15850 | 35.075 | 134 | 66 | 5 | 252 | 369 | 199 | 327 | 2.53e-11 | 64.7 |
| MS.gene006986.t1 | AT3G02380 | 40.000 | 95 | 56 | 1 | 11 | 104 | 7 | 101 | 5.17e-18 | 84.7 |
| MS.gene006986.t1 | AT3G02380 | 60.417 | 48 | 19 | 0 | 322 | 369 | 272 | 319 | 2.57e-11 | 64.7 |
| MS.gene006986.t1 | AT2G24790 | 39.560 | 91 | 54 | 1 | 18 | 107 | 6 | 96 | 5.85e-18 | 84.0 |
| MS.gene006986.t1 | AT2G24790 | 39.560 | 91 | 54 | 1 | 18 | 107 | 6 | 96 | 7.96e-18 | 82.0 |
| MS.gene006986.t1 | AT5G57660 | 39.560 | 91 | 50 | 2 | 18 | 107 | 20 | 106 | 1.54e-17 | 83.6 |
| MS.gene006986.t1 | AT4G38960 | 40.000 | 80 | 40 | 1 | 20 | 91 | 5 | 84 | 7.26e-13 | 67.0 |
| MS.gene006986.t1 | AT4G38960 | 40.000 | 80 | 40 | 1 | 20 | 91 | 5 | 84 | 7.26e-13 | 67.0 |
| MS.gene006986.t1 | AT2G21320 | 38.750 | 80 | 41 | 1 | 20 | 91 | 5 | 84 | 2.77e-12 | 65.1 |
| MS.gene006986.t1 | AT1G75540 | 35.000 | 100 | 52 | 2 | 20 | 106 | 5 | 104 | 4.12e-12 | 67.0 |
| MS.gene006986.t1 | AT2G31380 | 36.170 | 94 | 51 | 1 | 20 | 104 | 5 | 98 | 1.56e-11 | 64.3 |
| MS.gene006986.t1 | AT1G06040 | 35.106 | 94 | 52 | 1 | 20 | 104 | 5 | 98 | 9.65e-11 | 62.0 |
Find 0 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTCAAATAAAATATATCAAA+AGG | - | 51716:77485-77504 | None:intergenic | 15.0% |
| !! | AAACATTAAAAGGTTGAAAA+TGG | - | 51716:76734-76753 | None:intergenic | 20.0% |
| !! | AATTTAAAAACAGAGAAAGA+AGG | - | 51716:76089-76108 | None:intergenic | 20.0% |
| !! | ACACACAAATAAACATTAAA+AGG | - | 51716:76744-76763 | None:intergenic | 20.0% |
| !! | ATGTTTAAGTGAAATTTCTT+CGG | - | 51716:77061-77080 | None:intergenic | 20.0% |
| !!! | AGATGATTAGTTTTTGTTTT+TGG | + | 51716:76229-76248 | MS.gene006986:intron | 20.0% |
| !!! | ATTTTATTTGAGAGATATCA+AGG | + | 51716:77493-77512 | MS.gene006986:intron | 20.0% |
| !!! | GAAATTCATTTTGTCTTTTT+AGG | + | 51716:76117-76136 | MS.gene006986:intron | 20.0% |
| !!! | TAGTTTTTGTTTTTGGATTT+TGG | + | 51716:76236-76255 | MS.gene006986:intron | 20.0% |
| !!! | TGTTTTTCATGTAAATACAT+GGG | - | 51716:77762-77781 | None:intergenic | 20.0% |
| !!! | TTGTTTTTCATGTAAATACA+TGG | - | 51716:77763-77782 | None:intergenic | 20.0% |
| !!! | TTTTAATTCTCTGATTCTTA+GGG | + | 51716:76314-76333 | MS.gene006986:intron | 20.0% |
| ! | AAAACAAGAAATCCATTATC+AGG | - | 51716:76707-76726 | None:intergenic | 25.0% |
| ! | AAAAGAGGGAAAAATAAACA+AGG | - | 51716:76825-76844 | None:intergenic | 25.0% |
| ! | AAATTGAAGAAGTTCAATGT+AGG | + | 51716:77555-77574 | MS.gene006986:intron | 25.0% |
| ! | ATATATTCTTCAGGATCATA+GGG | - | 51716:76566-76585 | None:intergenic | 25.0% |
| ! | ATATTCAATGTCTTGAAGTA+TGG | - | 51716:77331-77350 | None:intergenic | 25.0% |
| ! | ATTATCCATGAATTATACCT+TGG | - | 51716:76060-76079 | None:intergenic | 25.0% |
| ! | TAGTAATGTTATCATTTCAG+TGG | + | 51716:76971-76990 | MS.gene006986:intron | 25.0% |
| ! | TATATATTCTTCAGGATCAT+AGG | - | 51716:76567-76586 | None:intergenic | 25.0% |
| ! | TTATCCATGAATTATACCTT+GGG | - | 51716:76059-76078 | None:intergenic | 25.0% |
| ! | TTTAATTCTCTGATTCTTAG+GGG | + | 51716:76315-76334 | MS.gene006986:intron | 25.0% |
| !! | GTTTTTCATGTAAATACATG+GGG | - | 51716:77761-77780 | None:intergenic | 25.0% |
| !! | TCTTTGCAATTTTCAAATGA+TGG | + | 51716:77661-77680 | MS.gene006986:intron | 25.0% |
| !!! | GTTTTAATTCTCTGATTCTT+AGG | + | 51716:76313-76332 | MS.gene006986:intron | 25.0% |
| !!! | TGGTTAAAAGGGTTTTTTTT+GGG | - | 51716:76394-76413 | None:intergenic | 25.0% |
| AAACCTGTAGATAAATTTGC+CGG | - | 51716:76593-76612 | None:intergenic | 30.0% | |
| AAAGGGATTCTGCATTATTA+CGG | + | 51716:77250-77269 | MS.gene006986:CDS | 30.0% | |
| AAATTAGAATAACAACCACC+TGG | - | 51716:76912-76931 | None:intergenic | 30.0% | |
| ACAGATATGACAAGCATATA+AGG | + | 51716:77782-77801 | MS.gene006986:intron | 30.0% | |
| ACTGTCTGATATGTTTGTTT+GGG | + | 51716:75947-75966 | MS.gene006986:CDS | 30.0% | |
| AGCAAAAGAAGAAAACAAGA+AGG | + | 51716:77277-77296 | MS.gene006986:CDS | 30.0% | |
| ATAGGAGCAATCAAAAAAGA+GGG | - | 51716:76839-76858 | None:intergenic | 30.0% | |
| GAAACAAACCCTAAGTAATT+TGG | + | 51716:76337-76356 | MS.gene006986:intron | 30.0% | |
| GTTATTGAAACAGAATCGTA+AGG | + | 51716:76478-76497 | MS.gene006986:intron | 30.0% | |
| TCAGATCTTGATCATAAACA+AGG | + | 51716:76171-76190 | MS.gene006986:intron | 30.0% | |
| TGATATTGTTCCTTCAAATG+AGG | + | 51716:76631-76650 | MS.gene006986:CDS | 30.0% | |
| TTACCAAAAAGAGTGAAGAT+AGG | - | 51716:76857-76876 | None:intergenic | 30.0% | |
| TTCAACTCAAGTGGTTAAAA+GGG | - | 51716:76405-76424 | None:intergenic | 30.0% | |
| TTCTCATAATTATCGTGCTA+TGG | + | 51716:76019-76038 | MS.gene006986:CDS | 30.0% | |
| ! | TGATCACTGGATATTTTCAT+TGG | + | 51716:77454-77473 | MS.gene006986:intron | 30.0% |
| ! | TGCAATTTTCAAATGATGGT+TGG | + | 51716:77665-77684 | MS.gene006986:intron | 30.0% |
| ! | TTCAATTTGTTCAACTCAAG+TGG | - | 51716:76414-76433 | None:intergenic | 30.0% |
| ! | TTTTTGGATTTTGGACTGTT+TGG | + | 51716:76245-76264 | MS.gene006986:intron | 30.0% |
| !! | GCTGCAATTTTAACATATTC+TGG | + | 51716:76448-76467 | MS.gene006986:intron | 30.0% |
| !!! | GGTTAAAAGGGTTTTTTTTG+GGG | - | 51716:76393-76412 | None:intergenic | 30.0% |
| !!! | GTGGTTAAAAGGGTTTTTTT+TGG | - | 51716:76395-76414 | None:intergenic | 30.0% |
| !!! | TTTTTTTTGGGGTGGTTAAA+GGG | - | 51716:76382-76401 | None:intergenic | 30.0% |
| AAACATTCTGTATCTTCTGC+TGG | + | 51716:77075-77094 | MS.gene006986:CDS | 35.0% | |
| AACATTCTGTATCTTCTGCT+GGG | + | 51716:77076-77095 | MS.gene006986:CDS | 35.0% | |
| AAGTAATATGGCTTGATCAC+TGG | + | 51716:77441-77460 | MS.gene006986:intron | 35.0% | |
| ACAAAAGCTCAGTAACTGAA+GGG | - | 51716:75836-75855 | None:intergenic | 35.0% | |
| AGAATCAGAGATGCAAAACA+AGG | - | 51716:76788-76807 | None:intergenic | 35.0% | |
| AGTGATCAAGCCATATTACT+TGG | - | 51716:77442-77461 | None:intergenic | 35.0% | |
| ATCGCATGAATCACAGATTA+AGG | - | 51716:75685-75704 | None:intergenic | 35.0% | |
| ATGAATTATACCTTGGGCAA+AGG | - | 51716:76053-76072 | None:intergenic | 35.0% | |
| ATGAGTTAGCAAGTCAAGAA+AGG | + | 51716:77232-77251 | MS.gene006986:CDS | 35.0% | |
| ATGATGACTCCCAAGTAATA+TGG | + | 51716:77429-77448 | MS.gene006986:intron | 35.0% | |
| CAATTCACAGTAAATGGAAC+AGG | - | 51716:77611-77630 | None:intergenic | 35.0% | |
| GAAATCCATTATCAGGAATG+AGG | - | 51716:76700-76719 | None:intergenic | 35.0% | |
| GAACCACAATTCACAGTAAA+TGG | - | 51716:77617-77636 | None:intergenic | 35.0% | |
| GAATTGCCACAATAATCACA+AGG | - | 51716:75561-75580 | None:intergenic | 35.0% | |
| GACTGTCTGATATGTTTGTT+TGG | + | 51716:75946-75965 | MS.gene006986:CDS | 35.0% | |
| GATAGGAGCAATCAAAAAAG+AGG | - | 51716:76840-76859 | None:intergenic | 35.0% | |
| GATCATAAACAAGGCATGAT+GGG | + | 51716:76180-76199 | MS.gene006986:intron | 35.0% | |
| GCACGATAATTATGAGAAGA+AGG | - | 51716:76017-76036 | None:intergenic | 35.0% | |
| GGTATGAATCACGTAAAGTT+CGG | + | 51716:77803-77822 | MS.gene006986:CDS | 35.0% | |
| GTATGAATCACGTAAAGTTC+GGG | + | 51716:77804-77823 | MS.gene006986:CDS | 35.0% | |
| GTGATCAAGCCATATTACTT+GGG | - | 51716:77441-77460 | None:intergenic | 35.0% | |
| GTTCAACTCAAGTGGTTAAA+AGG | - | 51716:76406-76425 | None:intergenic | 35.0% | |
| GTTCCATTTACTGTGAATTG+TGG | + | 51716:77611-77630 | MS.gene006986:intron | 35.0% | |
| TAACTCATATGGAGAAGGAA+CGG | - | 51716:77220-77239 | None:intergenic | 35.0% | |
| TCATAATTATCGTGCTATGG+AGG | + | 51716:76022-76041 | MS.gene006986:CDS | 35.0% | |
| TCCTGAAGAATATATACCAC+CGG | + | 51716:76571-76590 | MS.gene006986:CDS | 35.0% | |
| TCGTCAAGACTAACAAATGA+AGG | - | 51716:75978-75997 | None:intergenic | 35.0% | |
| TGAAGTATGGAGTTCAGATA+TGG | - | 51716:77318-77337 | None:intergenic | 35.0% | |
| TGAGTTAGCAAGTCAAGAAA+GGG | + | 51716:77233-77252 | MS.gene006986:CDS | 35.0% | |
| TGATCATAAACAAGGCATGA+TGG | + | 51716:76179-76198 | MS.gene006986:intron | 35.0% | |
| TTTCATGTAAATACATGGGG+TGG | - | 51716:77758-77777 | None:intergenic | 35.0% | |
| TTTCGACCTTGTGATTATTG+TGG | + | 51716:75552-75571 | MS.gene006986:CDS | 35.0% | |
| TTTCTGTCAAAACTGTGACT+GGG | + | 51716:75746-75765 | MS.gene006986:CDS | 35.0% | |
| TTTGCCCAAGGTATAATTCA+TGG | + | 51716:76052-76071 | MS.gene006986:intron | 35.0% | |
| TTTGTTGGGTATGAGATTGA+AGG | + | 51716:75924-75943 | MS.gene006986:CDS | 35.0% | |
| ! | AATAGTTTGTGTGAAGGGTT+AGG | - | 51716:75534-75553 | None:intergenic | 35.0% |
| ! | ACCCTAAGTAATTTGGAGTT+CGG | + | 51716:76344-76363 | MS.gene006986:intron | 35.0% |
| ! | ATAGTTTGTGTGAAGGGTTA+GGG | - | 51716:75533-75552 | None:intergenic | 35.0% |
| ! | GAAGAAAACAAGAAGGTATG+TGG | + | 51716:77284-77303 | MS.gene006986:intron | 35.0% |
| ! | GATGGGATTAGTGCTAAATT+AGG | + | 51716:76197-76216 | MS.gene006986:intron | 35.0% |
| ! | GTATTGATATAAGATGAGCC+AGG | + | 51716:76891-76910 | MS.gene006986:intron | 35.0% |
| ! | GTCGAAATAGTTTGTGTGAA+GGG | - | 51716:75539-75558 | None:intergenic | 35.0% |
| ! | TGTGGTTCTGTAATTGATCA+TGG | + | 51716:77629-77648 | MS.gene006986:intron | 35.0% |
| ! | TTTTCTGTCAAAACTGTGAC+TGG | + | 51716:75745-75764 | MS.gene006986:CDS | 35.0% |
| !! | AAAATCTTTGCTTTTGCCTC+AGG | + | 51716:75884-75903 | MS.gene006986:CDS | 35.0% |
| !! | ACAGTTTTGACAGAAAACAG+AGG | - | 51716:75742-75761 | None:intergenic | 35.0% |
| !! | AGAAGCATTACCTCATTTGA+AGG | - | 51716:76644-76663 | None:intergenic | 35.0% |
| !! | CTTAGAGAAGAGTTGATTTG+TGG | - | 51716:75652-75671 | None:intergenic | 35.0% |
| !! | TCTTGACTTGCTAACTCATA+TGG | - | 51716:77231-77250 | None:intergenic | 35.0% |
| !! | TTTGGTAAACGAACTTGCTA+TGG | + | 51716:76869-76888 | MS.gene006986:intron | 35.0% |
| !!! | AGGTTTTGATTGCGATGTAA+AGG | + | 51716:76607-76626 | MS.gene006986:CDS | 35.0% |
| !!! | GTTTTTTTTGGGGTGGTTAA+AGG | - | 51716:76383-76402 | None:intergenic | 35.0% |
| !!! | TAAAAGGGTTTTTTTTGGGG+TGG | - | 51716:76390-76409 | None:intergenic | 35.0% |
| AATTATACCTTGGGCAAAGG+AGG | - | 51716:76050-76069 | None:intergenic | 40.0% | |
| ACAGGAACAACTTGATGCAT+AGG | - | 51716:77015-77034 | None:intergenic | 40.0% | |
| ACATTCTGTATCTTCTGCTG+GGG | + | 51716:77077-77096 | MS.gene006986:CDS | 40.0% | |
| AGCCGAACTCCAAATTACTT+AGG | - | 51716:76349-76368 | None:intergenic | 40.0% | |
| AGTGCTCTATCTTGGCAAAT+CGG | - | 51716:77855-77874 | None:intergenic | 40.0% | |
| ATTCTGGGTTTGCAGGATAT+TGG | + | 51716:75858-75877 | MS.gene006986:CDS | 40.0% | |
| CATGAGGTGAAGATAGTGAA+AGG | - | 51716:75782-75801 | None:intergenic | 40.0% | |
| CTTGCTAACTCATATGGAGA+AGG | - | 51716:77225-77244 | None:intergenic | 40.0% | |
| GACAAAAGCTCAGTAACTGA+AGG | - | 51716:75837-75856 | None:intergenic | 40.0% | |
| GATTTGTGGAGTGAACTTCA+CGG | - | 51716:75638-75657 | None:intergenic | 40.0% | |
| GCCGAACTCCAAATTACTTA+GGG | - | 51716:76348-76367 | None:intergenic | 40.0% | |
| GGATTGTTGATCAATGAGCT+AGG | + | 51716:77686-77705 | MS.gene006986:intron | 40.0% | |
| GTAGAACAGAGTATAGTAGC+AGG | - | 51716:75714-75733 | None:intergenic | 40.0% | |
| GTCACAAGAGAAACAGAGTT+TGG | - | 51716:75616-75635 | None:intergenic | 40.0% | |
| TATCTTCACCTCATGAACGA+AGG | + | 51716:75787-75806 | MS.gene006986:CDS | 40.0% | |
| TCAGACTTGAGATACTCTGA+AGG | - | 51716:77174-77193 | None:intergenic | 40.0% | |
| TCGATCCTCATTCCTGATAA+TGG | + | 51716:76692-76711 | MS.gene006986:intron | 40.0% | |
| TCTCTCAACCACTGTAACAA+CGG | + | 51716:77141-77160 | MS.gene006986:CDS | 40.0% | |
| TTGATATAAGATGAGCCAGG+TGG | + | 51716:76894-76913 | MS.gene006986:intron | 40.0% | |
| ! | GCTCCTATCTTCACTCTTTT+TGG | + | 51716:76851-76870 | MS.gene006986:intron | 40.0% |
| ! | GGTCGAAATAGTTTGTGTGA+AGG | - | 51716:75540-75559 | None:intergenic | 40.0% |
| !! | GCTTTGAAGGATGTATCAAC+AGG | - | 51716:77033-77052 | None:intergenic | 40.0% |
| !!! | ACTGAGCTTTTGTCGATTCT+GGG | + | 51716:75843-75862 | MS.gene006986:CDS | 40.0% |
| !!! | TACTGAGCTTTTGTCGATTC+TGG | + | 51716:75842-75861 | MS.gene006986:CDS | 40.0% |
| ATACCCAGTGTAACAACGGA+GGG | + | 51716:77106-77125 | MS.gene006986:CDS | 45.0% | |
| CAGTGGTTGAGAGATTCTGA+AGG | - | 51716:77135-77154 | None:intergenic | 45.0% | |
| CCACCGGCAAATTTATCTAC+AGG | + | 51716:76587-76606 | MS.gene006986:CDS | 45.0% | |
| CCTCATACCCAGTGTAACAA+CGG | + | 51716:77102-77121 | MS.gene006986:CDS | 45.0% | |
| CCTGTAGATAAATTTGCCGG+TGG | - | 51716:76590-76609 | None:intergenic | 45.0% | |
| GAGAGCAGGACAAGAGTTAA+GGG | + | 51716:77829-77848 | MS.gene006986:CDS | 45.0% | |
| GCCGGTGGTATATATTCTTC+AGG | - | 51716:76575-76594 | None:intergenic | 45.0% | |
| TATGGAGAAGGAACGGCTTT+AGG | - | 51716:77213-77232 | None:intergenic | 45.0% | |
| TCAACCACTGTAACAACGGA+GGG | + | 51716:77145-77164 | MS.gene006986:CDS | 45.0% | |
| TGAATCACGTAAAGTTCGGG+CGG | + | 51716:77807-77826 | MS.gene006986:CDS | 45.0% | |
| TGTGTGAAGGGTTAGGGTTA+GGG | - | 51716:75527-75546 | None:intergenic | 45.0% | |
| TTGTGTGAAGGGTTAGGGTT+AGG | - | 51716:75528-75547 | None:intergenic | 45.0% | |
| ! | AGTGTAGGAGATGGGTTTGT+TGG | + | 51716:75909-75928 | MS.gene006986:CDS | 45.0% |
| ! | CTCAGGAAAGTGTAGGAGAT+GGG | + | 51716:75901-75920 | MS.gene006986:CDS | 45.0% |
| ! | GTGTAGGAGATGGGTTTGTT+GGG | + | 51716:75910-75929 | MS.gene006986:CDS | 45.0% |
| ! | TTCTTCGGTGTGAGCTTTGA+AGG | - | 51716:77046-77065 | None:intergenic | 45.0% |
| !! | CTTTTGCCTCAGGAAAGTGT+AGG | + | 51716:75894-75913 | MS.gene006986:CDS | 45.0% |
| !! | GGCTTTAGGAGTAGTTGACA+AGG | - | 51716:77199-77218 | None:intergenic | 45.0% |
| !! | TTTGTCGATTCTGGGTTTGC+AGG | + | 51716:75851-75870 | MS.gene006986:CDS | 45.0% |
| CACCCTGTAAAACCCTCAAG+AGG | - | 51716:75813-75832 | None:intergenic | 50.0% | |
| CAGAATCGTAAGGCTGCTTG+TGG | + | 51716:76488-76507 | MS.gene006986:intron | 50.0% | |
| CATACCCAGTGTAACAACGG+AGG | + | 51716:77105-77124 | MS.gene006986:CDS | 50.0% | |
| CATGAACGAAGGCCTCTTGA+GGG | + | 51716:75798-75817 | MS.gene006986:CDS | 50.0% | |
| CCATCTCCTACACTTTCCTG+AGG | - | 51716:75903-75922 | None:intergenic | 50.0% | |
| CCGTTGTTACACTGGGTATG+AGG | - | 51716:77105-77124 | None:intergenic | 50.0% | |
| CTCAACCACTGTAACAACGG+AGG | + | 51716:77144-77163 | MS.gene006986:CDS | 50.0% | |
| GGAGAGCAGGACAAGAGTTA+AGG | + | 51716:77828-77847 | MS.gene006986:CDS | 50.0% | |
| GGGTTAGGGTTAGGGTTTCT+AGG | - | 51716:75519-75538 | None:intergenic | 50.0% | |
| TCAAGAGGCCTTCGTTCATG+AGG | - | 51716:75798-75817 | None:intergenic | 50.0% | |
| TCATGAACGAAGGCCTCTTG+AGG | + | 51716:75797-75816 | MS.gene006986:CDS | 50.0% | |
| ! | AGGCCTCTTGAGGGTTTTAC+AGG | + | 51716:75807-75826 | MS.gene006986:CDS | 50.0% |
| ! | CCTCAGGAAAGTGTAGGAGA+TGG | + | 51716:75900-75919 | MS.gene006986:CDS | 50.0% |
| ! | GGCCTCTTGAGGGTTTTACA+GGG | + | 51716:75808-75827 | MS.gene006986:CDS | 50.0% |
| CGTCCCTCCGTTGTTACACT+GGG | - | 51716:77112-77131 | None:intergenic | 55.0% | |
| GCGTCCCTCCGTTGTTACAC+TGG | - | 51716:77113-77132 | None:intergenic | 60.0% | |
| GCGTCCCTCCGTTGTTACAG+TGG | - | 51716:77152-77171 | None:intergenic | 60.0% | |
| GGAGGTTCCTCCTTTGCCCA+AGG | + | 51716:76040-76059 | MS.gene006986:CDS | 60.0% | |
| GTAAAGTTCGGGCGGAGAGC+AGG | + | 51716:77815-77834 | MS.gene006986:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51716 | gene | 75504 | 77876 | 75504 | ID=MS.gene006986 |
| 51716 | mRNA | 75504 | 77876 | 75504 | ID=MS.gene006986.t1;Parent=MS.gene006986 |
| 51716 | exon | 75504 | 76061 | 75504 | ID=MS.gene006986.t1.exon1;Parent=MS.gene006986.t1 |
| 51716 | CDS | 75504 | 76061 | 75504 | ID=cds.MS.gene006986.t1;Parent=MS.gene006986.t1 |
| 51716 | exon | 76491 | 76652 | 76491 | ID=MS.gene006986.t1.exon2;Parent=MS.gene006986.t1 |
| 51716 | CDS | 76491 | 76652 | 76491 | ID=cds.MS.gene006986.t1;Parent=MS.gene006986.t1 |
| 51716 | exon | 76991 | 77298 | 76991 | ID=MS.gene006986.t1.exon3;Parent=MS.gene006986.t1 |
| 51716 | CDS | 76991 | 77298 | 76991 | ID=cds.MS.gene006986.t1;Parent=MS.gene006986.t1 |
| 51716 | exon | 77786 | 77876 | 77786 | ID=MS.gene006986.t1.exon4;Parent=MS.gene006986.t1 |
| 51716 | CDS | 77786 | 77876 | 77786 | ID=cds.MS.gene006986.t1;Parent=MS.gene006986.t1 |
| Gene Sequence |
| Protein sequence |
