AlfalfaGEDB | MS.gene007090

M. sativa cultivar XinJiangDaYe / MS.gene007090

KEGG: K13412
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005509 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046872 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF13499.9 PF13833.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007090.t1	XP_013450249.1	94.4	607	25	3	1	603	1	602	0.00E+00	1135.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007090.t1	Q7XIM0	60.4	589	190	6	1	582	1	553	7.7e-194	678.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007090.t1	A0A072U3H0	94.4	607	25	3	1	603	1	602	0.0e+00	1135.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene007090.t1	MTR_7g106710	94.399	607	25	3	1	603	1	602	1181
MS.gene007090.t1	MTR_7g106710	95.018	562	20	2	1	558	1	558	1102
MS.gene007090.t1	MTR_7g106710	92.555	497	29	2	1	493	1	493	948
MS.gene007090.t1	MTR_7g106710	94.213	432	17	2	1	428	1	428	845
MS.gene007090.t1	MTR_1g055255	65.436	596	187	6	1	592	1	581	776
MS.gene007090.t1	MTR_1g041150	62.988	589	191	5	1	581	1	570	739
MS.gene007090.t1	MTR_1g054865	57.833	600	223	5	1	572	1	598	685
MS.gene007090.t1	MTR_1g096490	65.126	476	164	1	119	592	14	489	652
MS.gene007090.t1	MTR_3g098070	68.304	448	142	0	131	578	25	472	648
MS.gene007090.t1	MTR_8g095440	66.960	454	145	1	130	578	20	473	648

Showing 1 to 10 of 354 entries

Previous1 2 3 4 5…36Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene007090.t1	AT5G04870	61.720	593	206	5	1	575	1	590	736
MS.gene007090.t1	AT3G10660	66.543	538	170	3	38	575	99	626	735
MS.gene007090.t1	AT3G10660	66.543	538	170	3	38	575	99	626	735
MS.gene007090.t1	AT2G38910	58.478	578	227	5	1	572	1	571	676
MS.gene007090.t1	AT4G35310	67.937	446	143	0	131	576	93	538	650
MS.gene007090.t1	AT4G35310	67.937	446	143	0	131	576	93	538	650
MS.gene007090.t1	AT4G38230	66.087	460	156	0	115	574	34	493	649
MS.gene007090.t1	AT4G38230	66.087	460	156	0	115	574	4	463	649
MS.gene007090.t1	AT4G38230	66.087	460	156	0	115	574	4	463	649
MS.gene007090.t1	AT2G17290	65.944	461	155	1	131	591	81	539	645

Showing 1 to 10 of 505 entries

Previous1 2 3 4 5…51Next

Find 89 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATACTGTCAATATGTT+AGG	0.371221	7.3:-7317795	None:intergenic
AAATAATGCATCACCTGCTT+GGG	0.406895	7.3:-7320571	MS.gene007090:CDS
AACAATGGCATGATTGACTA+TGG	0.402548	7.3:-7318426	MS.gene007090:CDS
AACACTAGCTTTAACATTGG+TGG	0.449973	7.3:-7317830	MS.gene007090:CDS
AACATGGGAAACAATTGTGT+TGG	0.533476	7.3:-7321127	MS.gene007090:CDS
AACGATTGTCAATGTTGTTG+AGG	0.535017	7.3:-7320402	MS.gene007090:CDS
AACTTATAGAATTCCCTAAA+AGG	0.343544	7.3:+7320737	None:intergenic
AAGGAGGTGAGTTGTTCGAT+AGG	0.620650	7.3:-7320475	MS.gene007090:CDS
AAGTTATAGGAGAGTGTTAT+GGG	0.395485	7.3:-7319561	MS.gene007090:CDS
AATAGACTACAATGAATTTG+TGG	0.450215	7.3:-7317903	MS.gene007090:CDS

Showing 1 to 10 of 89 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTAGACTCGTTTCTTG+AGG	+	chr7.3:7320825-7320844	None:intergenic	30.0%
AAGATGCATGAGATTTGAAA+AGG	+	chr7.3:7320952-7320971	None:intergenic	30.0%
AATAACCTGTATGGAAGATA+TGG	+	chr7.3:7320191-7320210	None:intergenic	30.0%
AATTTCAGATTCAGTGAGAA+TGG	+	chr7.3:7320335-7320354	None:intergenic	30.0%
AGACATTTGGTAGACAAATT+AGG	-	chr7.3:7318967-7318986	MS.gene007090:CDS	30.0%
AGATAGTCATGTGATAGAAA+AGG	+	chr7.3:7320035-7320054	None:intergenic	30.0%
AGATATCTTACCACCATAAA+AGG	+	chr7.3:7319446-7319465	None:intergenic	30.0%
AGATGAAGATTCAACTCTTA+AGG	-	chr7.3:7318605-7318624	MS.gene007090:CDS	30.0%
AGATGTTAATACAATCTGGT+AGG	-	chr7.3:7318999-7319018	MS.gene007090:CDS	30.0%
AGATTGGTATAATTTGGAGA+AGG	+	chr7.3:7318682-7318701	None:intergenic	30.0%

Showing 1 to 10 of 197 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	7317796	7321146	7317796	ID=MS.gene007090
chr7.3	mRNA	7317796	7321146	7317796	ID=MS.gene007090.t1;Parent=MS.gene007090
chr7.3	exon	7320279	7321146	7320279	ID=MS.gene007090.t1.exon1;Parent=MS.gene007090.t1
chr7.3	CDS	7320279	7321146	7320279	ID=cds.MS.gene007090.t1;Parent=MS.gene007090.t1
chr7.3	exon	7319488	7319631	7319488	ID=MS.gene007090.t1.exon2;Parent=MS.gene007090.t1
chr7.3	CDS	7319488	7319631	7319488	ID=cds.MS.gene007090.t1;Parent=MS.gene007090.t1
chr7.3	exon	7319237	7319389	7319237	ID=MS.gene007090.t1.exon3;Parent=MS.gene007090.t1
chr7.3	CDS	7319237	7319389	7319237	ID=cds.MS.gene007090.t1;Parent=MS.gene007090.t1
chr7.3	exon	7318918	7319033	7318918	ID=MS.gene007090.t1.exon4;Parent=MS.gene007090.t1
chr7.3	CDS	7318918	7319033	7318918	ID=cds.MS.gene007090.t1;Parent=MS.gene007090.t1
chr7.3	exon	7318570	7318737	7318570	ID=MS.gene007090.t1.exon5;Parent=MS.gene007090.t1
chr7.3	CDS	7318570	7318737	7318570	ID=cds.MS.gene007090.t1;Parent=MS.gene007090.t1
chr7.3	exon	7318236	7318460	7318236	ID=MS.gene007090.t1.exon6;Parent=MS.gene007090.t1
chr7.3	CDS	7318236	7318460	7318236	ID=cds.MS.gene007090.t1;Parent=MS.gene007090.t1
chr7.3	exon	7317796	7317933	7317796	ID=MS.gene007090.t1.exon7;Parent=MS.gene007090.t1
chr7.3	CDS	7317796	7317933	7317796	ID=cds.MS.gene007090.t1;Parent=MS.gene007090.t1

Gene Sequence

>MS.gene007090

ATGGGAAACAATTGTGTTGGACCTAGAAGAACCTATGAACATGAAAGTTTTCAAGCTTCATTTTGGTGGCCATGGTCATATCCAATCAACCAAACACAAATTTCAGTTTCTCAAAACACAAATTCTTCACAAACCAATCAACAAAACCCACCACATGTTCACAAAATTGAGAACAAAGACGTTAAGCCACTTCAGTCTAATACTGCTTCAGACAAACAAACTAGCACATCACAAGAAGATGCAGAACCAGTTACGCAGTTGAAGGAAAAAGATACACCAACAAAATCCGCTGCAAAAACAATGATGTTGAAAAATATTAATATTAGGAGGGTAACACCAAAAAGTGCAGGTCTTCGAGCAGAATCGGTTTTGTTGACAAACAATGGTCCTTTTAGGGAATTCTATAAGTTAGGAGATGAACTTGGGAAAGGAAAGTTTGGAACTACTTCACTTTGTTTGGAGAAATCAACCGGGAAGACATACGCATGCAAAGCAATCCCAAAAGTAAAATTGTTTAGAGAGAATGATATAGAGGATGTGAGGAGGGAGATTGAAATAATGCATCACCTGCTTGGGATTCCGAGTGTGATATCAATAAAAGGAGCTTATGAAGATCCCGTTGTTGTTTATATTGTCATGGAATTATGCGAAGGAGGTGAGTTGTTCGATAGGATTGTGGAAAGGAGACATTACACCGAGAGAAAGGCTGCTAAACTAGCAAGAACGATTGTCAATGTTGTTGAGGCTTGCCACTCACGTGGAGTTATGCATCGTGATCTTAAGCCTGAAAATTTCCTATTTGTTGATGGAGATGAAGATTCAACTCTTAAGGCAATTGATTTTGGACTGTCCATTTTCTTCAAACCAGGTTTGGAAACAATCCCCTTCTCCAAATTATACCAATCTCTAACCATGGTTCTTTTGTGAGCTTCAAAGTTCGTTTTCTTGCAACTTATATTTAATCGAAGTTTAATTACTTTTTTTCCAGTAAAATGCCTTATACTATCAACAAACTATACTCAATCATATGTGTGAATTTATAAGTAGTTATTCATAAAATTTGGGTTAGTGACTTTAGAAGTAGTTATACTTAAAAGTTGGGTTAACCCTTTAGAAGGAGCGACTTTATGCTTATCTCATTCAATATTAGACTCTAAACACCTTCGGAATTAGACATTTGGTAGACAAATTAGGATGCAATCTAGATGTTAATACAATCTGGTAGGCAAATTAGGATGAATAAGGATGGATTAAAGCGAGATACAATTTTTTTTAAAAAGGTATAATTTAATTTCTCTACAATGATAAAACTAAAAAACAGAAGTTATTAACCAGCTTGTCAAGCCTATATGAATCTCTAAAAACAACACAAAAGCTCAAAGATGTTAATACAATCCAAAAGAGTGGTGAACCACTCATGGAATAAGCACGGATACCCGTCTTCTTTTTTTTATTATACCTACTATTGGTGTAATGATCATGTATAGTTTTGTGACTAACGATCTTCTTTTGCAGGGGAAAAATTTAGTGATTTTGTCGGAAGTGCTTATTATGTTGCACCTGAAGTTATAGGAGAGTGTTATGGGCCAGAAGCTGATGTGTGGAGTGCAGGTGTGATCATATACATTCTCTTATGTGGAACACCTCCCTTTTATGGTGGTAAGATATCTTCACGATCTTTTCTTTTTGTTTCATTTCTATTCCCTTTTTTGTTTCATATAATAATAGAGGATTTTGATTATGTTCTTTGGTAATAGAATTGGATCAAGAGATATTTGATGAGGTTTTACATGGTGAAGTTGATTTCTGTTCCGATCCTTGGCCAAGTATATCTGAAAGTGCCAAAGACTTGGTTAAGAAGATGCTTGATAGAGATCCTAAAACACGAATTACTGCACATGAAGTTCTACGTAAGTTTCACCACTGCTTTTTCTTTATCTTTTTTAAATTATGATATTAGTGAAACATATTTCATATTTCTACATTCATATTTTCTTTATTCTAGTGCTTTTAATTGTTTATGGTTTTTGCATCTTCAGCTATTGCAATTGTTTAATTATGCAGAACATGAATTTTTATTACTAAATTGTGAATGATGTTCCAATCTTCGTAGGTCACCCTTGGATTCAGGTTGATGGAGTTGCTCCAGACATGCCTCTTGATTCTGCAACTTTGAGTCGTCTAAAGCAATTTTCTGCTATGAACAAGCTCAAGAAAATGGCTCTTAGAGTTAGTACCTTTTCTATCACATGACTATCTGTCACACTGAGAGTATATATTTTCTATTTTTTACAATACTAGTAGATTGCTATCTATTGAATCTTGCTATCTATTGAATCTTATTAGCAAAGTTGAATATGTTAATCTTCAAATTGCGCACTTGTAATGTTTCCCATATCTTCCATACAGGTTATTGCAAAAAATCTTTCTGAAGAAGAAATTTCTGGGTTGAAAGAATCGTTTAAGATGATAGATACAGACAATACTGGTCAAATTACTTTCGAAAAACTCAAGGTTGGACTGAAAAAGTTTGGCGCCATTCTCACTGAATCTGAAATTTTTGATCTAATGCAAGCTGTAAGTATTAATTCAAAAATCATCGTCAATTCCCTAAATGTTACACAACAACAACATTATTATTATTATTATAATAATCCTTTTGTCCCAATTTTGTTACTTATTGTAGGCAGATATTGATAACAATGGCATGATTGACTATGGAGAATTCATAGCTGCAACATTGCATTTAAACAAAGTTGACAAGGAAGATCATTTAGTTGCAGCTTTCTCATATTTTGATAAAGATGGAAATGGATACATCACTCAAGACGAGCTTCAACAAGTTTGTAAAGAGTTTGGCATGAAGGATGTCCATTTTGAGGAAATGATCCGAGAAGCTGATCAAAATAATGTGAGTATACATATTACAATGTTATGTGTTTCCATTTTCCAACAATTGAATGAAAAGTACATTGAATCTTCTATTCATAAGGTGTCAGCTCACTGGCAAGAGTTTGACTTTGTAACCTCAAGAAACGAGTCTAATTTTTCAGGACAAGTTGTAAAATAGTAATTAGCATAGTTTTAACTAATAATATATTCTCCTTCTCCAATATTTTATATCAAAAAGATATATGTAATATTCTAACTATGCCTTTTCAAATCTCATGCATCTTTTGATGATTTTGGTTGTTCATTGTTTTACCATTTCAGGATGGAAAAATAGACTACAATGAATTTGTGGCTATGATGCAGAGAGGCAATGCAGATTTAGAAAATAATGGTGCGAAGTGTAACACTAGCTTTAACATTGGTGGATTAGGGAAGACAAAGATACTGTCAATATGTTAG

Protein sequence

>MS.gene007090.t1

MGNNCVGPRRTYEHESFQASFWWPWSYPINQTQISVSQNTNSSQTNQQNPPHVHKIENKDVKPLQSNTASDKQTSTSQEDAEPVTQLKEKDTPTKSAAKTMMLKNINIRRVTPKSAGLRAESVLLTNNGPFREFYKLGDELGKGKFGTTSLCLEKSTGKTYACKAIPKVKLFRENDIEDVRREIEIMHHLLGIPSVISIKGAYEDPVVVYIVMELCEGGELFDRIVERRHYTERKAAKLARTIVNVVEACHSRGVMHRDLKPENFLFVDGDEDSTLKAIDFGLSIFFKPGEKFSDFVGSAYYVAPEVIGECYGPEADVWSAGVIIYILLCGTPPFYGELDQEIFDEVLHGEVDFCSDPWPSISESAKDLVKKMLDRDPKTRITAHEVLRHPWIQVDGVAPDMPLDSATLSRLKQFSAMNKLKKMALRVIAKNLSEEEISGLKESFKMIDTDNTGQITFEKLKVGLKKFGAILTESEIFDLMQAADIDNNGMIDYGEFIAATLHLNKVDKEDHLVAAFSYFDKDGNGYITQDELQQVCKEFGMKDVHFEEMIREADQNNDGKIDYNEFVAMMQRGNADLENNGAKCNTSFNIGGLGKTKILSIC