AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007108

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007108.t1 MTR_4g019670 80.501 559 62 3 1 552 1 519 0.0 828
MS.gene007108.t1 MTR_7g106510 79.428 559 52 5 1 552 1 503 0.0 815
MS.gene007108.t1 MTR_3g093900 47.332 581 266 12 1 552 1 570 3.29e-150 443
MS.gene007108.t1 MTR_8g467500 50.896 279 129 2 13 287 13 287 3.71e-67 219
MS.gene007108.t1 MTR_3g466980 32.727 165 107 2 1 164 1 162 1.97e-23 99.4
MS.gene007108.t1 MTR_5g075380 33.974 156 101 2 7 161 4 158 1.14e-22 95.1
MS.gene007108.t1 MTR_4g032620 36.066 122 78 0 6 127 3 124 3.02e-21 93.2
MS.gene007108.t1 MTR_8g036130 38.168 131 79 1 4 132 1 131 3.37e-21 93.6
MS.gene007108.t1 MTR_3g466830 33.333 150 99 1 6 154 2 151 3.77e-20 87.8
MS.gene007108.t1 MTR_4g031910 38.415 164 88 3 1 160 1 155 9.75e-20 88.6
MS.gene007108.t1 MTR_2g016210 30.345 145 100 1 7 150 4 148 5.39e-19 87.0
MS.gene007108.t1 MTR_3g466890 30.065 153 106 1 6 157 2 154 7.72e-18 81.3
MS.gene007108.t1 MTR_3g065100 38.462 117 72 0 6 122 3 119 1.09e-17 83.2
MS.gene007108.t1 MTR_1g090710 32.174 115 77 1 6 120 3 116 1.40e-17 80.5
MS.gene007108.t1 MTR_4g032260 41.053 95 56 0 38 132 35 129 2.08e-17 80.1
MS.gene007108.t1 MTR_4g032290 33.333 159 79 4 38 175 35 187 2.82e-17 81.6
MS.gene007108.t1 MTR_5g047580 34.167 120 75 2 1 120 1 116 1.97e-16 77.0
MS.gene007108.t1 MTR_4g063790 29.375 160 102 4 1 155 1 154 2.32e-16 77.4
MS.gene007108.t1 MTR_2g035610 36.800 125 76 1 1 125 1 122 2.87e-16 75.5
MS.gene007108.t1 MTR_3g031100 29.915 117 82 0 6 122 3 119 3.81e-16 78.6
MS.gene007108.t1 MTR_3g031240 27.350 117 85 0 6 122 3 119 1.85e-15 75.1
MS.gene007108.t1 MTR_4g028800 42.857 70 38 1 7 76 4 71 2.24e-15 71.6
MS.gene007108.t1 MTR_3g466930 33.065 124 82 1 35 157 2 125 2.97e-15 73.2
MS.gene007108.t1 MTR_1g090697 33.333 117 73 2 1 115 1 114 7.78e-15 72.8
MS.gene007108.t1 MTR_1g090783 25.517 145 107 1 6 150 2 145 7.78e-15 72.8
MS.gene007108.t1 MTR_3g466900 31.452 124 84 1 35 157 2 125 1.01e-14 71.6
MS.gene007108.t1 MTR_1g077390 30.328 122 83 2 6 126 3 123 1.53e-14 71.6
MS.gene007108.t1 MTR_4g028720 34.694 147 92 2 6 149 3 148 8.26e-14 69.7
MS.gene007108.t1 MTR_1g077300 32.800 125 79 2 6 126 3 126 2.71e-13 68.2
MS.gene007108.t1 MTR_1g084950 37.097 124 70 3 1 120 1 120 2.97e-13 68.2
MS.gene007108.t1 MTR_1g077320 31.579 152 97 3 1 149 1 148 5.10e-13 67.4
MS.gene007108.t1 MTR_7g011950 32.237 152 96 3 1 149 1 148 5.35e-13 67.4
MS.gene007108.t1 MTR_3g467080 25.000 156 113 2 6 157 3 158 1.77e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007108.t1 AT1G65300 29.464 224 144 4 6 220 2 220 5.81e-21 93.6
MS.gene007108.t1 AT2G40210 28.743 167 116 2 4 170 1 164 3.07e-19 90.1
MS.gene007108.t1 AT3G05860 32.117 137 89 2 1 136 1 134 3.11e-17 82.0
MS.gene007108.t1 AT3G05860 32.117 137 89 2 1 136 1 134 3.26e-17 82.0
MS.gene007108.t1 AT3G05860 32.117 137 89 2 1 136 1 134 8.69e-17 79.7
MS.gene007108.t1 AT5G26650 32.456 114 77 0 7 120 2 115 1.28e-16 82.0
MS.gene007108.t1 AT1G31630 33.043 115 76 1 6 120 2 115 2.29e-16 80.9
MS.gene007108.t1 AT5G27960 30.370 135 86 1 7 133 2 136 3.36e-16 80.1
MS.gene007108.t1 AT1G31640 31.304 115 78 1 6 120 2 115 2.39e-15 79.0
MS.gene007108.t1 AT2G28700 31.624 117 80 0 4 120 1 117 4.84e-15 77.0
MS.gene007108.t1 AT5G06500 29.861 144 100 1 6 149 3 145 4.94e-15 75.5
MS.gene007108.t1 AT1G65330 32.743 113 76 0 8 120 4 116 1.15e-14 75.1
MS.gene007108.t1 AT5G48670 35.043 117 76 0 6 122 3 119 1.94e-14 75.1
MS.gene007108.t1 AT5G26630 33.708 178 109 5 1 177 1 170 2.14e-14 73.2
MS.gene007108.t1 AT2G15660 29.487 156 103 5 40 194 30 179 3.42e-14 73.2
MS.gene007108.t1 AT1G22590 26.606 109 77 1 6 114 3 108 3.86e-13 68.2
MS.gene007108.t1 AT5G27810 31.034 87 60 0 34 120 3 89 5.81e-11 60.5

Find 118 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCTAATCAAGCTAATTT+TGG 0.158650 7.3:+7591478 MS.gene007108:CDS
TTGCTTCCTCAAGAAAATTT+TGG 0.166377 7.3:+7591967 MS.gene007108:CDS
AACTTTGGTGGCAATATTAA+TGG 0.198018 7.3:+7592315 MS.gene007108:CDS
TTGCCTCCTCAAGGATATTT+TGG 0.199048 7.3:+7591745 MS.gene007108:CDS
TTGACTCAAACTTGGTTATT+AGG 0.210241 7.3:-7590967 None:intergenic
CAAAATCTTCAAAGTTAAAT+TGG 0.211371 7.3:-7591993 None:intergenic
TTGTCTCATCAAGGAAATTT+TGG 0.233564 7.3:+7592084 MS.gene007108:CDS
GATTGTCACATGCTCCATTT+TGG 0.244676 7.3:-7590858 None:intergenic
CCAACAACCCTTGTCAGATT+TGG 0.245325 7.3:+7591354 MS.gene007108:CDS
AACGGTGATGGGGTGCATAA+TGG 0.258877 7.3:+7591304 MS.gene007108:CDS
GTTTCTTCCTCGAGGAAATC+TGG 0.271699 7.3:+7591648 MS.gene007108:CDS
GAAAGGGTTGTTCACCAAAA+TGG 0.296295 7.3:+7590844 MS.gene007108:CDS
AGAAAATGAAGAGACTTTAA+TGG 0.308700 7.3:+7591087 MS.gene007108:CDS
ACGGTGATGGGGTGCATAAT+GGG 0.323141 7.3:+7591305 MS.gene007108:CDS
AACTTTGTTGACAATAATTA+CGG 0.325383 7.3:+7592363 MS.gene007108:CDS
GAAGTTCAAGAAAACTTTAG+AGG 0.330050 7.3:+7592201 MS.gene007108:CDS
GAGGCATGTGCGGTTGTGTT+TGG 0.339289 7.3:+7590893 MS.gene007108:CDS
CAACAACCCTTGTCAGATTT+GGG 0.353572 7.3:+7591355 MS.gene007108:CDS
CAAGTTTGAGTCAATGTCAT+TGG 0.377334 7.3:+7590976 MS.gene007108:CDS
AGGCATGTGCGGTTGTGTTT+GGG 0.389221 7.3:+7590894 MS.gene007108:CDS
TTTGAAGGTCAAGTAAACTT+TGG 0.391480 7.3:+7591877 MS.gene007108:CDS
GTGATACAAAACCATCAATA+TGG 0.392745 7.3:+7590921 MS.gene007108:CDS
GCAGGAGATGGCCATATTGA+TGG 0.394229 7.3:-7590932 None:intergenic
AAACCACCACTAGAATATTC+AGG 0.410956 7.3:-7591532 None:intergenic
CCTCCACTTGCATATCTTAG+TGG 0.426541 7.3:+7591439 MS.gene007108:CDS
GAAAATGAAGAGACTTTAAT+GGG 0.430958 7.3:+7591088 MS.gene007108:CDS
AACAATATGGGTAGCAACAT+TGG 0.431457 7.3:+7591682 MS.gene007108:CDS
GATGTCTAGGCATTTAGAAA+AGG 0.433553 7.3:+7591222 MS.gene007108:CDS
ATGTCTAGGCATTTAGAAAA+GGG 0.436802 7.3:+7591223 MS.gene007108:CDS
TGTGCGGTTGTGTTTGGGCC+AGG 0.446264 7.3:+7590899 MS.gene007108:CDS
CATAATGGGGTTAACATGTA+TGG 0.446371 7.3:+7591319 MS.gene007108:CDS
CAATGACATTGACTCAAACT+TGG 0.455302 7.3:-7590975 None:intergenic
CCAAATCTGACAAGGGTTGT+TGG 0.456247 7.3:-7591354 None:intergenic
TTTCTTCCTCGAGGAAATCT+GGG 0.457179 7.3:+7591649 MS.gene007108:CDS
TTTCATCAAAACAACTTTGG+TGG 0.457377 7.3:+7592303 MS.gene007108:CDS
TTACTTTACACAACGGTGAT+GGG 0.461878 7.3:+7591293 MS.gene007108:CDS
GGAGGTCAAAGCAACTTTCA+AGG 0.462180 7.3:+7591766 MS.gene007108:CDS
TTGTGTAAAGTAAAAGATAT+TGG 0.463560 7.3:-7591283 None:intergenic
ATACCACCACATACAAATCT+TGG 0.466401 7.3:+7592042 MS.gene007108:CDS
ACTTTGTTGACAATAATTAC+GGG 0.467038 7.3:+7592364 MS.gene007108:CDS
ATATCAACACCACCATTGCT+TGG 0.469029 7.3:-7592273 None:intergenic
TACCACATGCAAATCTGAAT+GGG 0.471278 7.3:+7591824 MS.gene007108:CDS
TTTACTTTACACAACGGTGA+TGG 0.473941 7.3:+7591292 MS.gene007108:CDS
ACAATATGGGTAGCAACATT+GGG 0.477464 7.3:+7591683 MS.gene007108:CDS
CTACCACATGCAAATCTGAA+TGG 0.479159 7.3:+7591823 MS.gene007108:CDS
CTTGCATATCTTAGTGGTGG+TGG 0.499161 7.3:+7591445 MS.gene007108:CDS
TACGGGAGCAACTTCAACCC+TGG 0.503874 7.3:+7592381 MS.gene007108:CDS
GATATTGGTGCCAACGGTGG+AGG 0.504265 7.3:-7591268 None:intergenic
GGTGGCAATATTAATGGAGA+TGG 0.512485 7.3:+7592321 MS.gene007108:CDS
ATTAGGTCTTCAGCCACTGC+AGG 0.513329 7.3:-7590950 None:intergenic
AACAACCTTGGAAGTAGCAT+GGG 0.513933 7.3:+7591412 MS.gene007108:CDS
ATTGGTGCCAACGGTGGAGG+AGG 0.517191 7.3:-7591265 None:intergenic
ATACCACCTCATACAAATCC+TGG 0.520709 7.3:+7592138 MS.gene007108:CDS
TGAGAATAAAACTCGAAGAA+AGG 0.533789 7.3:+7590802 MS.gene007108:CDS
GACATTACAGGTAGCAACAC+AGG 0.536241 7.3:+7591796 MS.gene007108:CDS
GGTGGAGGAGGATTATTAAG+AGG 0.544411 7.3:-7591253 None:intergenic
CCAACACCAGGATTTGTATG+AGG 0.556800 7.3:-7592144 None:intergenic
TCTTCAGCCACTGCAGGAGA+TGG 0.560210 7.3:-7590944 None:intergenic
TGCTATAAGAGAAGATTGAA+AGG 0.560605 7.3:+7590827 MS.gene007108:CDS
TTTGATGACAACACAGGTAG+CGG 0.563188 7.3:+7591904 MS.gene007108:CDS
TGGTGGTGGTTGTGATAACT+TGG 0.567708 7.3:+7591459 MS.gene007108:CDS
ATATTAATGGAGATGGAATG+TGG 0.570191 7.3:+7592328 MS.gene007108:CDS
AGATCACTAGAAAGATGTCT+AGG 0.570407 7.3:+7591209 MS.gene007108:CDS
TAACAACCTTGGAAGTAGCA+TGG 0.574908 7.3:+7591411 MS.gene007108:CDS
TACTTTACACAACGGTGATG+GGG 0.579959 7.3:+7591294 MS.gene007108:CDS
GTAGGTGTGTTGCCTCCTCA+AGG 0.582180 7.3:+7591736 MS.gene007108:CDS
TAATAATCCTCCTCCACCGT+TGG 0.582273 7.3:+7591258 MS.gene007108:CDS
AGTGGTTTCAATAACAACCT+TGG 0.589310 7.3:+7591400 MS.gene007108:CDS
GTATCCCCATGCTACTTCCA+AGG 0.589387 7.3:-7591417 None:intergenic
CCACTAGAATATTCAGGTGA+TGG 0.589851 7.3:-7591526 None:intergenic
CGGTGATGGGGTGCATAATG+GGG 0.590425 7.3:+7591306 MS.gene007108:CDS
CATGATATGTTTCTTCCTCG+AGG 0.591879 7.3:+7591640 MS.gene007108:CDS
GTAAAAGATATTGGTGCCAA+CGG 0.592046 7.3:-7591274 None:intergenic
ACAACACAGGTAGCGGCATG+TGG 0.592125 7.3:+7591911 MS.gene007108:CDS
GACAATCTTATGTGGTATTG+AGG 0.594613 7.3:+7590874 MS.gene007108:CDS
GCTATAAGAGAAGATTGAAA+GGG 0.594807 7.3:+7590828 MS.gene007108:CDS
TTTATTCAGAAGGAAATCCA+GGG 0.595152 7.3:-7592398 None:intergenic
TTTCTCGCCCAAATCTGACA+AGG 0.596335 7.3:-7591362 None:intergenic
CCACATACAAATCTTGGTGT+TGG 0.598589 7.3:+7592048 MS.gene007108:CDS
ATAATATATGTAGCAACATG+TGG 0.610672 7.3:+7592232 MS.gene007108:CDS
CATGAAAATCCAAGCAATGG+TGG 0.610991 7.3:+7592264 MS.gene007108:CDS
TTCTCGCCCAAATCTGACAA+GGG 0.612284 7.3:-7591361 None:intergenic
CCACATGAAAATCCAAGCAA+TGG 0.614633 7.3:+7592261 MS.gene007108:CDS
CCACTTGCATATCTTAGTGG+TGG 0.615058 7.3:+7591442 MS.gene007108:CDS
TCACCTGAATATTCTAGTGG+TGG 0.615267 7.3:+7591529 MS.gene007108:CDS
AAAGATATTGGTGCCAACGG+TGG 0.617732 7.3:-7591271 None:intergenic
CCTCATACAAATCCTGGTGT+TGG 0.617961 7.3:+7592144 MS.gene007108:CDS
AAAGTTGATCAAATGAGCAG+TGG 0.618596 7.3:+7591382 MS.gene007108:CDS
CCATCACATGAAAATCATAG+TGG 0.621754 7.3:+7591610 MS.gene007108:CDS
TGTCTAGGCATTTAGAAAAG+GGG 0.623976 7.3:+7591224 MS.gene007108:CDS
GAAAATCCTAGTGGTGGTGT+AGG 0.627650 7.3:+7591718 MS.gene007108:CDS
CCATCACCTGAATATTCTAG+TGG 0.635359 7.3:+7591526 MS.gene007108:CDS
GTTGATGTGTTGTCTCATCA+AGG 0.635762 7.3:+7592075 MS.gene007108:CDS
GTTGATGTGTTGTCTCATCA+AGG 0.635762 7.3:+7592171 MS.gene007108:CDS
ATGCATCAAATTGAAAACGA+AGG 0.641960 7.3:+7591118 MS.gene007108:CDS
TTTGGAGTTGATAACAACAC+AGG 0.642445 7.3:+7592102 MS.gene007108:CDS
CCACATTCAAATTCGAGTGG+TGG 0.643895 7.3:+7591937 MS.gene007108:CDS
TTCTTCCTCGAGGAAATCTG+GGG 0.645397 7.3:+7591650 MS.gene007108:CDS
ACACCAAGATTTGTATGTGG+TGG 0.650459 7.3:-7592045 None:intergenic
AACACACCTACACCACCACT+AGG 0.650603 7.3:-7591724 None:intergenic
ACATCAACATCACCAACACC+AGG 0.652418 7.3:-7592156 None:intergenic
AATATGGCCATCTCCTGCAG+TGG 0.655817 7.3:+7590937 MS.gene007108:CDS
CCTCCAAAATATCCTTGAGG+AGG 0.656666 7.3:-7591748 None:intergenic
CCAACACCAAGATTTGTATG+TGG 0.658592 7.3:-7592048 None:intergenic
ATGTGGTATTGAGGCATGTG+CGG 0.658684 7.3:+7590883 MS.gene007108:CDS
TGACCTCCAAAATATCCTTG+AGG 0.660910 7.3:-7591751 None:intergenic
TTCCCATTCAGATTTGCATG+TGG 0.661550 7.3:-7591826 None:intergenic
CCACCACTCGAATTTGAATG+TGG 0.662521 7.3:-7591937 None:intergenic
GAGCATGTGACAATCTTATG+TGG 0.668241 7.3:+7590866 MS.gene007108:CDS
ACACCAGGATTTGTATGAGG+TGG 0.668736 7.3:-7592141 None:intergenic
ACATTACAGGTAGCAACACA+GGG 0.671623 7.3:+7591797 MS.gene007108:CDS
TCACATGAAAATCCTAGTGG+TGG 0.674534 7.3:+7591712 MS.gene007108:CDS
CCACTAAGATATGCAAGTGG+AGG 0.680818 7.3:-7591439 None:intergenic
CAATCACATGAAAATCCTAG+TGG 0.684612 7.3:+7591709 MS.gene007108:CDS
CCACCACTAAGATATGCAAG+TGG 0.695087 7.3:-7591442 None:intergenic
ACAACCTTGGAAGTAGCATG+GGG 0.697964 7.3:+7591413 MS.gene007108:CDS
ATACCACATTCAAATTCGAG+TGG 0.714863 7.3:+7591934 MS.gene007108:CDS
AAATGCCCCAGATTTCCTCG+AGG 0.761109 7.3:-7591655 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTTGTTGACAATAATTA+CGG + chr7.3:7592363-7592382 MS.gene007108:CDS 20.0%
!! CAAAATCTTCAAAGTTAAAT+TGG - chr7.3:7591996-7592015 None:intergenic 20.0%
!! TTGTGTAAAGTAAAAGATAT+TGG - chr7.3:7591286-7591305 None:intergenic 20.0%
!!! AGTTTTATTCTCAATCAATT+TGG - chr7.3:7590795-7590814 None:intergenic 20.0%
!!! ATATCTTTTACTTTACACAA+CGG + chr7.3:7591286-7591305 MS.gene007108:CDS 20.0%
!!! TTTCTTTGTTGATCTTTTTA+AGG - chr7.3:7591072-7591091 None:intergenic 20.0%
! ACTTTGTTGACAATAATTAC+GGG + chr7.3:7592364-7592383 MS.gene007108:CDS 25.0%
! AGAAAATGAAGAGACTTTAA+TGG + chr7.3:7591087-7591106 MS.gene007108:CDS 25.0%
! ATAATATATGTAGCAACATG+TGG + chr7.3:7592232-7592251 MS.gene007108:CDS 25.0%
! GAAAATGAAGAGACTTTAAT+GGG + chr7.3:7591088-7591107 MS.gene007108:CDS 25.0%
!! ACTTTTCATCAAAACAACTT+TGG + chr7.3:7592300-7592319 MS.gene007108:CDS 25.0%
!! GGGCATTTTATTAACAATAT+GGG + chr7.3:7591670-7591689 MS.gene007108:CDS 25.0%
!!! GGAAAATTTTGATAGTATCA+TGG + chr7.3:7591582-7591601 MS.gene007108:CDS 25.0%
ATATTAATGGAGATGGAATG+TGG + chr7.3:7592328-7592347 MS.gene007108:CDS 30.0%
ATGCATCAAATTGAAAACGA+AGG + chr7.3:7591118-7591137 MS.gene007108:CDS 30.0%
ATGTCTAGGCATTTAGAAAA+GGG + chr7.3:7591223-7591242 MS.gene007108:CDS 30.0%
GAAGTTCAAGAAAACTTTAG+AGG + chr7.3:7592201-7592220 MS.gene007108:CDS 30.0%
GCTATAAGAGAAGATTGAAA+GGG + chr7.3:7590828-7590847 MS.gene007108:CDS 30.0%
GTGATACAAAACCATCAATA+TGG + chr7.3:7590921-7590940 MS.gene007108:CDS 30.0%
TATCCTCCAAAAAAGTCAAT+TGG - chr7.3:7591027-7591046 None:intergenic 30.0%
TGAGAATAAAACTCGAAGAA+AGG + chr7.3:7590802-7590821 MS.gene007108:CDS 30.0%
TGCTATAAGAGAAGATTGAA+AGG + chr7.3:7590827-7590846 MS.gene007108:CDS 30.0%
TTGACTCAAACTTGGTTATT+AGG - chr7.3:7590970-7590989 None:intergenic 30.0%
TTTCATCAAAACAACTTTGG+TGG + chr7.3:7592303-7592322 MS.gene007108:CDS 30.0%
TTTGAAGGTCAAGTAAACTT+TGG + chr7.3:7591877-7591896 MS.gene007108:CDS 30.0%
! AACTTTGGTGGCAATATTAA+TGG + chr7.3:7592315-7592334 MS.gene007108:CDS 30.0%
! TGACCTTCAAAATTTTCTTG+AGG - chr7.3:7591868-7591887 None:intergenic 30.0%
! TTGCTTCCTCAAGAAAATTT+TGG + chr7.3:7591967-7591986 MS.gene007108:CDS 30.0%
! TTGGCTAATCAAGCTAATTT+TGG + chr7.3:7591478-7591497 MS.gene007108:CDS 30.0%
! TTGTCTCATCAAGGAAATTT+TGG + chr7.3:7592084-7592103 MS.gene007108:CDS 30.0%
!! GAAGATTTTGATATCAACAC+AGG + chr7.3:7592006-7592025 MS.gene007108:CDS 30.0%
!! GGGGCATTTTATTAACAATA+TGG + chr7.3:7591669-7591688 MS.gene007108:CDS 30.0%
!!! AGCGTTTTTTCAAGACAATT+TGG + chr7.3:7591561-7591580 MS.gene007108:CDS 30.0%
!!! ATTGACTTTTTTGGAGGATA+AGG + chr7.3:7591027-7591046 MS.gene007108:CDS 30.0%
!!! GGTGGTTTTGATAATAGAAT+GGG + chr7.3:7591499-7591518 MS.gene007108:CDS 30.0%
!!! GTGGTTTTGATAATAGAATG+GGG + chr7.3:7591500-7591519 MS.gene007108:CDS 30.0%
!!! TGGTGGTTTTGATAATAGAA+TGG + chr7.3:7591498-7591517 MS.gene007108:CDS 30.0%
!!! TTGACTTTTTTGGAGGATAA+GGG + chr7.3:7591028-7591047 MS.gene007108:CDS 30.0%
AAACCACCACTAGAATATTC+AGG - chr7.3:7591535-7591554 None:intergenic 35.0%
AACAATATGGGTAGCAACAT+TGG + chr7.3:7591682-7591701 MS.gene007108:CDS 35.0%
ACAATATGGGTAGCAACATT+GGG + chr7.3:7591683-7591702 MS.gene007108:CDS 35.0%
AGATCACTAGAAAGATGTCT+AGG + chr7.3:7591209-7591228 MS.gene007108:CDS 35.0%
AGTGGTTTCAATAACAACCT+TGG + chr7.3:7591400-7591419 MS.gene007108:CDS 35.0%
ATACCACATTCAAATTCGAG+TGG + chr7.3:7591934-7591953 MS.gene007108:CDS 35.0%
ATACCACCACATACAAATCT+TGG + chr7.3:7592042-7592061 MS.gene007108:CDS 35.0%
CAAGTTTGAGTCAATGTCAT+TGG + chr7.3:7590976-7590995 MS.gene007108:CDS 35.0%
CAATCACATGAAAATCCTAG+TGG + chr7.3:7591709-7591728 MS.gene007108:CDS 35.0%
CCATCACATGAAAATCATAG+TGG + chr7.3:7591610-7591629 MS.gene007108:CDS 35.0%
GACAATCTTATGTGGTATTG+AGG + chr7.3:7590874-7590893 MS.gene007108:CDS 35.0%
GATGTCTAGGCATTTAGAAA+AGG + chr7.3:7591222-7591241 MS.gene007108:CDS 35.0%
TACCACATGCAAATCTGAAT+GGG + chr7.3:7591824-7591843 MS.gene007108:CDS 35.0%
TGTCTAGGCATTTAGAAAAG+GGG + chr7.3:7591224-7591243 MS.gene007108:CDS 35.0%
TTACTTTACACAACGGTGAT+GGG + chr7.3:7591293-7591312 MS.gene007108:CDS 35.0%
TTTACTTTACACAACGGTGA+TGG + chr7.3:7591292-7591311 MS.gene007108:CDS 35.0%
! AAAGTTGATCAAATGAGCAG+TGG + chr7.3:7591382-7591401 MS.gene007108:CDS 35.0%
! CATAATGGGGTTAACATGTA+TGG + chr7.3:7591319-7591338 MS.gene007108:CDS 35.0%
! CCACTATGATTTTCATGTGA+TGG - chr7.3:7591613-7591632 None:intergenic 35.0%
! CCTCCTCAAGAAAATTTTGA+AGG + chr7.3:7591862-7591881 MS.gene007108:CDS 35.0%
! CCTTCAAAATTTTCTTGAGG+AGG - chr7.3:7591865-7591884 None:intergenic 35.0%
! CTTCCTCAAGAAAATTTTGG+AGG + chr7.3:7591970-7591989 MS.gene007108:CDS 35.0%
! GCTAATCAAGCTAATTTTGG+TGG + chr7.3:7591481-7591500 MS.gene007108:CDS 35.0%
!! CAAGGTTTTGATGACATTAC+AGG + chr7.3:7591784-7591803 MS.gene007108:CDS 35.0%
!! CAATGACATTGACTCAAACT+TGG - chr7.3:7590978-7590997 None:intergenic 35.0%
!! GTAAAAGATATTGGTGCCAA+CGG - chr7.3:7591277-7591296 None:intergenic 35.0%
!! TTTGGAGTTGATAACAACAC+AGG + chr7.3:7592102-7592121 MS.gene007108:CDS 35.0%
!!! ATTGATGGTTTTGTATCACC+TGG - chr7.3:7590920-7590939 None:intergenic 35.0%
!!! GACTGACCAATTGACTTTTT+TGG + chr7.3:7591018-7591037 MS.gene007108:CDS 35.0%
!!! TGACCAATTGACTTTTTTGG+AGG + chr7.3:7591021-7591040 MS.gene007108:CDS 35.0%
AACAACCTTGGAAGTAGCAT+GGG + chr7.3:7591412-7591431 MS.gene007108:CDS 40.0%
ACACCAAGATTTGTATGTGG+TGG - chr7.3:7592048-7592067 None:intergenic 40.0%
ACATTACAGGTAGCAACACA+GGG + chr7.3:7591797-7591816 MS.gene007108:CDS 40.0%
ATACCACCTCATACAAATCC+TGG + chr7.3:7592138-7592157 MS.gene007108:CDS 40.0%
ATATCAACACCACCATTGCT+TGG - chr7.3:7592276-7592295 None:intergenic 40.0%
CAACAACCCTTGTCAGATTT+GGG + chr7.3:7591355-7591374 MS.gene007108:CDS 40.0%
CATGAAAATCCAAGCAATGG+TGG + chr7.3:7592264-7592283 MS.gene007108:CDS 40.0%
CATGATATGTTTCTTCCTCG+AGG + chr7.3:7591640-7591659 MS.gene007108:CDS 40.0%
CCAACACCAAGATTTGTATG+TGG - chr7.3:7592051-7592070 None:intergenic 40.0%
CCACATGAAAATCCAAGCAA+TGG + chr7.3:7592261-7592280 MS.gene007108:CDS 40.0%
CCACTAGAATATTCAGGTGA+TGG - chr7.3:7591529-7591548 None:intergenic 40.0%
CCATCACCTGAATATTCTAG+TGG + chr7.3:7591526-7591545 MS.gene007108:CDS 40.0%
CTACCACATGCAAATCTGAA+TGG + chr7.3:7591823-7591842 MS.gene007108:CDS 40.0%
GAAAGGGTTGTTCACCAAAA+TGG + chr7.3:7590844-7590863 MS.gene007108:CDS 40.0%
GAGCATGTGACAATCTTATG+TGG + chr7.3:7590866-7590885 MS.gene007108:CDS 40.0%
GGTGGCAATATTAATGGAGA+TGG + chr7.3:7592321-7592340 MS.gene007108:CDS 40.0%
GTTGATGTGTTGTCTCATCA+AGG + chr7.3:7592075-7592094 MS.gene007108:CDS 40.0%
TAACAACCTTGGAAGTAGCA+TGG + chr7.3:7591411-7591430 MS.gene007108:CDS 40.0%
TACTTTACACAACGGTGATG+GGG + chr7.3:7591294-7591313 MS.gene007108:CDS 40.0%
TCACATGAAAATCCTAGTGG+TGG + chr7.3:7591712-7591731 MS.gene007108:CDS 40.0%
TCACCTGAATATTCTAGTGG+TGG + chr7.3:7591529-7591548 MS.gene007108:CDS 40.0%
TGACCTCCAAAATATCCTTG+AGG - chr7.3:7591754-7591773 None:intergenic 40.0%
TTCCCATTCAGATTTGCATG+TGG - chr7.3:7591829-7591848 None:intergenic 40.0%
TTTCTTCCTCGAGGAAATCT+GGG + chr7.3:7591649-7591668 MS.gene007108:CDS 40.0%
! CCACATACAAATCTTGGTGT+TGG + chr7.3:7592048-7592067 MS.gene007108:CDS 40.0%
! CCATTGCTTGGATTTTCATG+TGG - chr7.3:7592264-7592283 None:intergenic 40.0%
! GATTGTCACATGCTCCATTT+TGG - chr7.3:7590861-7590880 None:intergenic 40.0%
! TGGCCTCCAAAATTTTCTTG+AGG - chr7.3:7591976-7591995 None:intergenic 40.0%
! TTGCCTCCTCAAGGATATTT+TGG + chr7.3:7591745-7591764 MS.gene007108:CDS 40.0%
! TTGCTTGGATTTTCATGTGG+AGG - chr7.3:7592261-7592280 None:intergenic 40.0%
! TTTGATGACAACACAGGTAG+CGG + chr7.3:7591904-7591923 MS.gene007108:CDS 40.0%
!!! GGATGTTTTGATGACAACAC+AGG + chr7.3:7591898-7591917 MS.gene007108:CDS 40.0%
ACAACCTTGGAAGTAGCATG+GGG + chr7.3:7591413-7591432 MS.gene007108:CDS 45.0%
ACACCAGGATTTGTATGAGG+TGG - chr7.3:7592144-7592163 None:intergenic 45.0%
ACATCAACATCACCAACACC+AGG - chr7.3:7592063-7592082 None:intergenic 45.0%
CCAAATCTGACAAGGGTTGT+TGG - chr7.3:7591357-7591376 None:intergenic 45.0%
CCAACAACCCTTGTCAGATT+TGG + chr7.3:7591354-7591373 MS.gene007108:CDS 45.0%
CCAACACCAGGATTTGTATG+AGG - chr7.3:7592147-7592166 None:intergenic 45.0%
CCACATTCAAATTCGAGTGG+TGG + chr7.3:7591937-7591956 MS.gene007108:CDS 45.0%
CCACCACTAAGATATGCAAG+TGG - chr7.3:7591445-7591464 None:intergenic 45.0%
CCACCACTCGAATTTGAATG+TGG - chr7.3:7591940-7591959 None:intergenic 45.0%
CCACTAAGATATGCAAGTGG+AGG - chr7.3:7591442-7591461 None:intergenic 45.0%
CCACTTGCATATCTTAGTGG+TGG + chr7.3:7591442-7591461 MS.gene007108:CDS 45.0%
CCTCATACAAATCCTGGTGT+TGG + chr7.3:7592144-7592163 MS.gene007108:CDS 45.0%
CCTCCAAAATATCCTTGAGG+AGG - chr7.3:7591751-7591770 None:intergenic 45.0%
CCTCCACTTGCATATCTTAG+TGG + chr7.3:7591439-7591458 MS.gene007108:CDS 45.0%
CTTGCATATCTTAGTGGTGG+TGG + chr7.3:7591445-7591464 MS.gene007108:CDS 45.0%
GACATTACAGGTAGCAACAC+AGG + chr7.3:7591796-7591815 MS.gene007108:CDS 45.0%
GGAGGTCAAAGCAACTTTCA+AGG + chr7.3:7591766-7591785 MS.gene007108:CDS 45.0%
GGTGGAGGAGGATTATTAAG+AGG - chr7.3:7591256-7591275 None:intergenic 45.0%
GTTTCTTCCTCGAGGAAATC+TGG + chr7.3:7591648-7591667 MS.gene007108:CDS 45.0%
TAATAATCCTCCTCCACCGT+TGG + chr7.3:7591258-7591277 MS.gene007108:CDS 45.0%
TTCTCGCCCAAATCTGACAA+GGG - chr7.3:7591364-7591383 None:intergenic 45.0%
TTCTTCCTCGAGGAAATCTG+GGG + chr7.3:7591650-7591669 MS.gene007108:CDS 45.0%
TTTCTCGCCCAAATCTGACA+AGG - chr7.3:7591365-7591384 None:intergenic 45.0%
! ATGTGGTATTGAGGCATGTG+CGG + chr7.3:7590883-7590902 MS.gene007108:CDS 45.0%
! GAAAATCCTAGTGGTGGTGT+AGG + chr7.3:7591718-7591737 MS.gene007108:CDS 45.0%
!! AAAGATATTGGTGCCAACGG+TGG - chr7.3:7591274-7591293 None:intergenic 45.0%
!! CCTCCTCAAGGATATTTTGG+AGG + chr7.3:7591748-7591767 MS.gene007108:CDS 45.0%
!! TGGTGGTGGTTGTGATAACT+TGG + chr7.3:7591459-7591478 MS.gene007108:CDS 45.0%
AAATGCCCCAGATTTCCTCG+AGG - chr7.3:7591658-7591677 None:intergenic 50.0%
AACACACCTACACCACCACT+AGG - chr7.3:7591727-7591746 None:intergenic 50.0%
AATATGGCCATCTCCTGCAG+TGG + chr7.3:7590937-7590956 MS.gene007108:CDS 50.0%
AGGCATGTGCGGTTGTGTTT+GGG + chr7.3:7590894-7590913 MS.gene007108:CDS 50.0%
ATTAGGTCTTCAGCCACTGC+AGG - chr7.3:7590953-7590972 None:intergenic 50.0%
GCAGGAGATGGCCATATTGA+TGG - chr7.3:7590935-7590954 None:intergenic 50.0%
! GTATCCCCATGCTACTTCCA+AGG - chr7.3:7591420-7591439 None:intergenic 50.0%
!! AACGGTGATGGGGTGCATAA+TGG + chr7.3:7591304-7591323 MS.gene007108:CDS 50.0%
!! ACGGTGATGGGGTGCATAAT+GGG + chr7.3:7591305-7591324 MS.gene007108:CDS 50.0%
GAGGCATGTGCGGTTGTGTT+TGG + chr7.3:7590893-7590912 MS.gene007108:CDS 55.0%
GTAGGTGTGTTGCCTCCTCA+AGG + chr7.3:7591736-7591755 MS.gene007108:CDS 55.0%
TACGGGAGCAACTTCAACCC+TGG + chr7.3:7592381-7592400 MS.gene007108:CDS 55.0%
TCTTCAGCCACTGCAGGAGA+TGG - chr7.3:7590947-7590966 None:intergenic 55.0%
! ACAACACAGGTAGCGGCATG+TGG + chr7.3:7591911-7591930 MS.gene007108:CDS 55.0%
!! CGGTGATGGGGTGCATAATG+GGG + chr7.3:7591306-7591325 MS.gene007108:CDS 55.0%
!! GATATTGGTGCCAACGGTGG+AGG - chr7.3:7591271-7591290 None:intergenic 55.0%
TGTGCGGTTGTGTTTGGGCC+AGG + chr7.3:7590899-7590918 MS.gene007108:CDS 60.0%
!! ATTGGTGCCAACGGTGGAGG+AGG - chr7.3:7591268-7591287 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 7590761 7592419 7590761 ID=MS.gene007108
chr7.3 mRNA 7590761 7592419 7590761 ID=MS.gene007108.t1;Parent=MS.gene007108
chr7.3 exon 7590761 7592419 7590761 ID=MS.gene007108.t1.exon1;Parent=MS.gene007108.t1
chr7.3 CDS 7590761 7592419 7590761 ID=cds.MS.gene007108.t1;Parent=MS.gene007108.t1
Gene Sequence

>MS.gene007108

ATGACTAGAATCAGAAAAAAGAAGATCACATCCAAATTGATTGAGAATAAAACTCGAAGAAAGGCGTGCTATAAGAGAAGATTGAAAGGGTTGTTCACCAAAATGGAGCATGTGACAATCTTATGTGGTATTGAGGCATGTGCGGTTGTGTTTGGGCCAGGTGATACAAAACCATCAATATGGCCATCTCCTGCAGTGGCTGAAGACCTAATAACCAAGTTTGAGTCAATGTCATTGGATGTGCAATCGAAAAATAAGACTGACCAATTGACTTTTTTGGAGGATAAGGGCAAAAAACTTGAAGCAAGCCTTAAAAAGATCAACAAAGAAAATGAAGAGACTTTAATGGGAGCTTATATGCATCAAATTGAAAACGAAGGTAAGTCTTTAGATGATTTTGATCATGATGTTCTGAATCGCTTGATTGCTTTTACTCTTGAAAAAATTAAGATCACTAGAAAGATGTCTAGGCATTTAGAAAAGGGGATCTTGCCTCTTAATAATCCTCCTCCACCGTTGGCACCAATATCTTTTACTTTACACAACGGTGATGGGGTGCATAATGGGGTTAACATGTATGGACATTTTTTGAACCAACAACCCTTGTCAGATTTGGGCGAGAAAGTTGATCAAATGAGCAGTGGTTTCAATAACAACCTTGGAAGTAGCATGGGGATACCTCCACTTGCATATCTTAGTGGTGGTGGTTGTGATAACTTGGCTAATCAAGCTAATTTTGGTGGTTTTGATAATAGAATGGGGATACCATCACCTGAATATTCTAGTGGTGGTTTTGATACAGCGTTTTTTCAAGACAATTTGGAAAATTTTGATAGTATCATGGAGATACCATCACATGAAAATCATAGTGGTAGTGTTCATGATATGTTTCTTCCTCGAGGAAATCTGGGGCATTTTATTAACAATATGGGTAGCAACATTGGGATACAATCACATGAAAATCCTAGTGGTGGTGTAGGTGTGTTGCCTCCTCAAGGATATTTTGGAGGTCAAAGCAACTTTCAAGGTTTTGATGACATTACAGGTAGCAACACAGGGATACTACCACATGCAAATCTGAATGGGAATGTTGATTCGTTGCCTCCTCAAGAAAATTTTGAAGGTCAAGTAAACTTTGGATGTTTTGATGACAACACAGGTAGCGGCATGTGGATACCACATTCAAATTCGAGTGGTGGTGATACATTGCTTCCTCAAGAAAATTTTGGAGGCCAATTTAACTTTGAAGATTTTGATATCAACACAGGTAGCAACATGTTGATACCACCACATACAAATCTTGGTGTTGGTGATGTTGATGTGTTGTCTCATCAAGGAAATTTTGGAGTTGATAACAACACAGGTAGCAGCATGTTGATACCACCTCATACAAATCCTGGTGTTGGTGATGTTGATGTGTTGTCTCATCAAGGAAATTTTGAAGTTCAAGAAAACTTTAGAGGTTTTGATGATAATATATGTAGCAACATGTGGAAACCTCCACATGAAAATCCAAGCAATGGTGGTGTTGATATGATGACTTTTCATCAAAACAACTTTGGTGGCAATATTAATGGAGATGGAATGTGGAGTTTCAATGCAAACTTTGTTGACAATAATTACGGGAGCAACTTCAACCCTGGATTTCCTTCTGAATAA
Protein sequence

>MS.gene007108.t1

MTRIRKKKITSKLIENKTRRKACYKRRLKGLFTKMEHVTILCGIEACAVVFGPGDTKPSIWPSPAVAEDLITKFESMSLDVQSKNKTDQLTFLEDKGKKLEASLKKINKENEETLMGAYMHQIENEGKSLDDFDHDVLNRLIAFTLEKIKITRKMSRHLEKGILPLNNPPPPLAPISFTLHNGDGVHNGVNMYGHFLNQQPLSDLGEKVDQMSSGFNNNLGSSMGIPPLAYLSGGGCDNLANQANFGGFDNRMGIPSPEYSSGGFDTAFFQDNLENFDSIMEIPSHENHSGSVHDMFLPRGNLGHFINNMGSNIGIQSHENPSGGVGVLPPQGYFGGQSNFQGFDDITGSNTGILPHANLNGNVDSLPPQENFEGQVNFGCFDDNTGSGMWIPHSNSSGGDTLLPQENFGGQFNFEDFDINTGSNMLIPPHTNLGVGDVDVLSHQGNFGVDNNTGSSMLIPPHTNPGVGDVDVLSHQGNFEVQENFRGFDDNICSNMWKPPHENPSNGGVDMMTFHQNNFGGNINGDGMWSFNANFVDNNYGSNFNPGFPSE