AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007168

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007168.t1 MTR_7g105370 91.205 307 18 5 1 303 1 302 1.91e-180 499
MS.gene007168.t1 MTR_1g058350 56.287 334 84 14 11 298 6 323 8.30e-98 291
MS.gene007168.t1 MTR_8g023990 65.414 133 43 2 36 165 148 280 7.50e-52 178
MS.gene007168.t1 MTR_7g117455 73.585 106 25 2 59 161 117 222 7.06e-48 166
MS.gene007168.t1 MTR_5g053920 60.484 124 40 1 51 165 186 309 1.29e-45 158
MS.gene007168.t1 MTR_1g093600 57.143 126 40 1 50 161 182 307 3.28e-41 147
MS.gene007168.t1 MTR_1g116920 45.802 131 53 4 57 183 159 275 8.82e-29 112
MS.gene007168.t1 MTR_7g073240 43.810 105 52 5 59 160 121 221 4.60e-16 78.2
MS.gene007168.t1 MTR_4g028130 40.541 111 59 5 59 166 314 420 1.81e-15 77.4
MS.gene007168.t1 MTR_4g028130 40.541 111 59 5 59 166 314 420 2.09e-15 77.0
MS.gene007168.t1 MTR_5g075410 41.121 107 53 5 59 161 321 421 3.24e-15 76.3
MS.gene007168.t1 MTR_4g028130 40.541 111 59 5 59 166 314 420 3.96e-15 76.3
MS.gene007168.t1 MTR_2g011940 37.190 121 69 5 43 160 327 443 5.36e-15 75.9
MS.gene007168.t1 MTR_2g011940 37.190 121 69 5 43 160 336 452 5.91e-15 75.5
MS.gene007168.t1 MTR_2g011940 37.190 121 69 5 43 160 336 452 7.84e-15 75.1
MS.gene007168.t1 MTR_3g467380 36.170 141 78 6 59 191 338 474 4.71e-14 73.2
MS.gene007168.t1 MTR_8g101360 34.848 132 77 4 31 160 111 235 6.50e-14 72.8
MS.gene007168.t1 MTR_1g094960 40.000 95 55 2 54 146 112 206 1.54e-12 68.2
MS.gene007168.t1 MTR_3g073420 33.083 133 78 5 51 179 108 233 3.56e-12 67.0
MS.gene007168.t1 MTR_2g094570 36.842 114 68 3 49 160 97 208 4.59e-12 67.0
MS.gene007168.t1 MTR_2g094570 36.842 114 68 3 49 160 153 264 5.13e-12 66.6
MS.gene007168.t1 MTR_2g094570 36.842 114 68 3 49 160 97 208 5.45e-12 66.6
MS.gene007168.t1 MTR_2g014770 33.813 139 84 3 20 156 124 256 7.19e-12 66.2
MS.gene007168.t1 MTR_2g014770 33.813 139 84 3 20 156 124 256 9.28e-12 65.9
MS.gene007168.t1 MTR_4g124900 34.884 129 75 4 34 160 105 226 1.04e-11 65.9
MS.gene007168.t1 MTR_4g124900 34.884 129 75 4 34 160 105 226 1.12e-11 65.9
MS.gene007168.t1 MTR_2g043250 34.884 129 75 4 34 160 105 226 2.14e-11 65.1
MS.gene007168.t1 MTR_4g088210 36.937 111 68 2 48 156 136 246 7.36e-11 63.2
MS.gene007168.t1 MTR_4g088210 36.937 111 68 2 48 156 136 246 7.74e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007168.t1 AT5G06250 44.599 287 115 8 1 268 1 262 8.50e-70 218
MS.gene007168.t1 AT5G06250 45.070 284 112 8 1 265 1 259 4.29e-69 216
MS.gene007168.t1 AT5G06250 45.070 284 112 8 1 265 1 259 4.56e-69 216
MS.gene007168.t1 AT5G06250 43.902 287 96 7 1 265 1 244 2.66e-65 206
MS.gene007168.t1 AT5G06250 43.902 287 96 7 1 265 1 244 2.85e-65 206
MS.gene007168.t1 AT3G11580 51.923 208 80 4 55 248 24 225 2.73e-62 198
MS.gene007168.t1 AT2G36080 57.711 201 46 6 54 250 32 197 6.06e-62 197
MS.gene007168.t1 AT2G36080 57.711 201 46 6 54 250 32 197 6.10e-62 196
MS.gene007168.t1 AT3G11580 51.923 208 80 4 55 248 24 225 1.84e-61 199
MS.gene007168.t1 AT2G36080 80.357 112 18 1 54 161 32 143 1.76e-57 183
MS.gene007168.t1 AT2G36080 80.357 112 18 1 54 161 32 143 1.76e-57 183
MS.gene007168.t1 AT3G11580 73.109 119 20 1 55 161 24 142 3.52e-57 184
MS.gene007168.t1 AT3G11580 73.109 119 20 1 55 161 24 142 3.52e-57 184
MS.gene007168.t1 AT3G11580 73.109 119 20 1 55 161 24 142 3.52e-57 184
MS.gene007168.t1 AT3G61970 71.795 117 29 1 49 161 12 128 8.70e-54 177
MS.gene007168.t1 AT2G46870 66.929 127 37 3 40 161 14 140 6.78e-50 168
MS.gene007168.t1 AT1G01030 46.018 226 91 7 55 250 51 275 5.23e-48 164
MS.gene007168.t1 AT1G13260 68.468 111 33 1 57 165 185 295 8.31e-48 163
MS.gene007168.t1 AT1G01030 69.369 111 30 2 55 161 51 161 2.23e-46 160
MS.gene007168.t1 AT1G68840 60.630 127 47 1 56 179 184 310 5.43e-46 159
MS.gene007168.t1 AT1G68840 60.630 127 47 1 56 179 184 310 5.43e-46 159
MS.gene007168.t1 AT3G25730 63.063 111 37 1 57 163 180 290 1.06e-44 155
MS.gene007168.t1 AT4G01500 39.918 243 95 5 52 244 28 269 7.63e-43 150
MS.gene007168.t1 AT1G25560 57.812 128 41 2 56 174 191 314 3.84e-42 149
MS.gene007168.t1 AT1G51120 47.368 95 41 1 59 144 177 271 2.14e-24 101
MS.gene007168.t1 AT1G50680 45.918 98 41 1 59 144 156 253 1.55e-23 99.0
MS.gene007168.t1 AT4G32010 40.179 112 60 5 59 167 285 392 3.36e-15 76.6
MS.gene007168.t1 AT4G32010 40.179 112 60 5 59 167 281 388 3.45e-15 76.3
MS.gene007168.t1 AT2G30470 40.952 105 56 4 59 161 294 394 9.40e-15 75.1
MS.gene007168.t1 AT1G77850 35.455 110 67 2 53 160 112 219 5.66e-13 69.7
MS.gene007168.t1 AT1G77850 35.455 110 67 2 53 160 112 219 5.82e-13 69.7
MS.gene007168.t1 AT1G35240 37.931 116 69 3 60 173 126 240 2.15e-12 67.8
MS.gene007168.t1 AT2G28350 32.624 141 92 3 28 166 84 223 7.04e-12 66.2
MS.gene007168.t1 AT2G28350 32.624 141 92 3 28 166 84 223 7.06e-12 66.2
MS.gene007168.t1 AT1G35520 37.069 116 70 3 60 173 126 240 1.60e-11 65.1
MS.gene007168.t1 AT1G34310 36.207 116 71 3 60 173 126 240 2.06e-11 64.7
MS.gene007168.t1 AT1G34410 33.884 121 67 4 60 173 126 240 9.46e-11 62.8

Find 79 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTACGTCGCTTGGTGTTAA+TGG 0.127068 7.2:-7891189 None:intergenic
TTGATTGAATCTAGCTAATA+TGG 0.221602 7.2:-7892738 None:intergenic
AGCAATCTGGTGACAAAGTT+TGG 0.259112 7.2:-7892611 None:intergenic
TATCTCTCAGCATGTTGTTT+TGG 0.292618 7.2:-7891234 None:intergenic
GGAGGTTCCGGTATTCATAT+TGG 0.328744 7.2:+7891325 MS.gene007168:CDS
TCCAGGGTGCTGAGGCTGTT+TGG 0.331988 7.2:+7892531 MS.gene007168:CDS
TTAATATTAATATTATTATC+AGG 0.333871 7.2:-7892573 None:intergenic
CAGGTAAGTGTTGGAGGTTC+CGG 0.351251 7.2:+7891313 MS.gene007168:CDS
TGTGGTTGTGTTCTGACTTT+GGG 0.369690 7.2:-7892484 None:intergenic
CAAAGCTATGTTCTTACAAA+AGG 0.401403 7.2:+7891357 MS.gene007168:CDS
GAAATAGTTCGAGTACTTCC+AGG 0.409986 7.2:+7892514 MS.gene007168:CDS
GAGGTTGACGGTGGAGGTGG+TGG 0.410580 7.2:-7892680 None:intergenic
TTCAACTTCCCTACGTCGCT+TGG 0.425371 7.2:-7891198 None:intergenic
TTGAAGGAGGTTGACGGTGG+AGG 0.432392 7.2:-7892686 None:intergenic
GCAATCTGGTGACAAAGTTT+GGG 0.439412 7.2:-7892610 None:intergenic
AAGGAGGTTGACGGTGGAGG+TGG 0.440000 7.2:-7892683 None:intergenic
TGGAGGTGGTGGTAGAATTG+TGG 0.441638 7.2:-7892669 None:intergenic
TACAAGAAACAACATCACTA+TGG 0.450273 7.2:+7891022 MS.gene007168:CDS
GGATGATGATGAGTAGGATA+AGG 0.453506 7.2:-7891603 None:intergenic
GTGTGGTTGTGTTCTGACTT+TGG 0.459825 7.2:-7892485 None:intergenic
AGGATGAGTCAGGTAAGTGT+TGG 0.475422 7.2:+7891304 MS.gene007168:CDS
GCTATGTTCTTACAAAAGGT+TGG 0.477263 7.2:+7891361 MS.gene007168:CDS
GAGGATTTGAAGGAGGTTGA+CGG 0.478467 7.2:-7892692 None:intergenic
GGAGGTGGTGGTAGAATTGT+GGG 0.483601 7.2:-7892668 None:intergenic
TATTAATATTATTATCAGGT+TGG 0.493103 7.2:-7892569 None:intergenic
TACTGTTCCAATATGAATAC+CGG 0.505382 7.2:-7891332 None:intergenic
CCATCTGTAGTGATGGCAAT+GGG 0.515422 7.2:+7891526 MS.gene007168:CDS
GACATATTATAAGAGCAATC+TGG 0.517703 7.2:-7892624 None:intergenic
ATGCGCAGGATAGAGTTCTC+TGG 0.519337 7.2:-7891580 None:intergenic
ATCTCGTGGAGGCGCCGCCA+TGG 0.519364 7.2:+7891468 MS.gene007168:CDS
CCCATTGCCATCACTACAGA+TGG 0.522140 7.2:-7891526 None:intergenic
TGTAGTGATGGCAATGGGAA+TGG 0.522719 7.2:+7891531 MS.gene007168:CDS
TTGATTTCTTCTGAGTCTAG+TGG 0.523246 7.2:-7891261 None:intergenic
ATGAGTCAGGTAAGTGTTGG+AGG 0.531766 7.2:+7891307 MS.gene007168:CDS
TGATTTCTTCTGAGTCTAGT+GGG 0.531823 7.2:-7891260 None:intergenic
ATGTGATGGTGAGGATTTGA+AGG 0.538757 7.2:-7892702 None:intergenic
TGGGAATAGCACTGTTCCTG+TGG 0.547485 7.2:+7891551 MS.gene007168:CDS
CCATTAACACCAAGCGACGT+AGG 0.548021 7.2:+7891189 MS.gene007168:CDS
CATCCCTTGTCATACCATGC+AGG 0.555918 7.2:+7891621 MS.gene007168:CDS
AGCAGATCCATCTGTAGTGA+TGG 0.561002 7.2:+7891519 MS.gene007168:CDS
CATTAACACCAAGCGACGTA+GGG 0.563833 7.2:+7891190 MS.gene007168:CDS
ATAGCACTGTTCCTGTGGGG+TGG 0.568873 7.2:+7891556 MS.gene007168:CDS
TCCAAACAGCCTCAGCACCC+TGG 0.570047 7.2:-7892532 None:intergenic
AGTTCTCTGGACCACCCCAC+AGG 0.570942 7.2:-7891567 None:intergenic
AAAGATAAACGTCTTGATGC+TGG 0.575473 7.2:+7891396 MS.gene007168:CDS
ATGTTGTTTCTTGTATTGTG+TGG 0.576167 7.2:-7891014 None:intergenic
GTAGTGATGGCAATGGGAAT+GGG 0.579455 7.2:+7891532 MS.gene007168:CDS
GATTTGAAGGAGGTTGACGG+TGG 0.580120 7.2:-7892689 None:intergenic
TGAGTAGGATAAGGATGCGC+AGG 0.580460 7.2:-7891594 None:intergenic
ATGGATCTGCTAACATGAGC+CGG 0.583256 7.2:-7891507 None:intergenic
CGAGTACTTCCAGGGTGCTG+AGG 0.583570 7.2:+7892523 MS.gene007168:CDS
TGGTAGTAACTCTACTCCAC+CGG 0.584083 7.2:+7891488 MS.gene007168:CDS
GACAAGGGATGATGATGAGT+AGG 0.585445 7.2:-7891609 None:intergenic
CTCAACGGTTGTTTATCTCG+TGG 0.587033 7.2:+7891454 MS.gene007168:CDS
GAGGCTGTTTGGAGTGAACA+TGG 0.594809 7.2:+7892542 MS.gene007168:CDS
TCCATCTGTAGTGATGGCAA+TGG 0.596273 7.2:+7891525 MS.gene007168:CDS
GGGAATAGCACTGTTCCTGT+GGG 0.597826 7.2:+7891552 MS.gene007168:CDS
CGAACTATTTCCACAAGGTG+TGG 0.598711 7.2:-7892502 None:intergenic
AGCTGAACTAGAAGATGATG+TGG 0.605647 7.2:+7891092 MS.gene007168:CDS
AAGAAACAACATCACTATGG+TGG 0.609594 7.2:+7891025 MS.gene007168:CDS
CTAGACTCAGAAGAAATCAA+AGG 0.611927 7.2:+7891264 MS.gene007168:CDS
AACGGTTGTTTATCTCGTGG+AGG 0.625722 7.2:+7891457 MS.gene007168:CDS
CAGAACACAACCACACCTTG+TGG 0.630986 7.2:+7892492 MS.gene007168:CDS
GTTGTTGACGTAGCATGTGA+TGG 0.636988 7.2:-7892716 None:intergenic
AAAACCTGCATGGTATGACA+AGG 0.637700 7.2:-7891625 None:intergenic
TGATGGTGAGGATTTGAAGG+AGG 0.642677 7.2:-7892699 None:intergenic
AAATAGTTCGAGTACTTCCA+GGG 0.668571 7.2:+7892515 MS.gene007168:CDS
GTTGTAATGTGACAGGTGAA+GGG 0.678694 7.2:+7892460 MS.gene007168:intron
TGACGTAGCATGTGATGGTG+AGG 0.679050 7.2:-7892711 None:intergenic
AAACCTGCATGGTATGACAA+GGG 0.685749 7.2:-7891624 None:intergenic
CACGAGATAAACAACCGTTG+AGG 0.688403 7.2:-7891453 None:intergenic
GACACCGTGTACATCCTCAA+CGG 0.690188 7.2:+7891439 MS.gene007168:CDS
TATAATATGTCATCAACACA+AGG 0.697764 7.2:+7892636 MS.gene007168:CDS
ACAACCGTTGAGGATGTACA+CGG 0.701448 7.2:-7891443 None:intergenic
GATCTGCTAACATGAGCCGG+TGG 0.708271 7.2:-7891504 None:intergenic
GGAATAGCACTGTTCCTGTG+GGG 0.714296 7.2:+7891553 MS.gene007168:CDS
GTGGAGTAGAGTTACTACCA+TGG 0.729540 7.2:-7891485 None:intergenic
GTACTCGAACTATTTCCACA+AGG 0.735032 7.2:-7892507 None:intergenic
GAGTAGAGTTACTACCATGG+CGG 0.790463 7.2:-7891482 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAAAACCATAAATAAATA+CGG - chr7.2:7892397-7892416 None:intergenic 15.0%
!! TATTAATATTATTATCAGGT+TGG - chr7.2:7892572-7892591 None:intergenic 15.0%
!!! ATATTCAATATTTTACTTAG+AGG + chr7.2:7891698-7891717 MS.gene007168:intron 15.0%
!! AAATTAAATTCAACAAAAGC+AGG - chr7.2:7892261-7892280 None:intergenic 20.0%
!! ATGTATATAAGAGATTATAG+TGG - chr7.2:7891658-7891677 None:intergenic 20.0%
!! ATTCTATTACAAATTTCAGA+TGG + chr7.2:7892055-7892074 MS.gene007168:intron 20.0%
!! TGAATTGAAAATGAATGTAT+GGG + chr7.2:7892426-7892445 MS.gene007168:intron 20.0%
!! TTGAATTGAAAATGAATGTA+TGG + chr7.2:7892425-7892444 MS.gene007168:intron 20.0%
! ATTGTTTAGACGAAAAGTTT+AGG - chr7.2:7891863-7891882 None:intergenic 25.0%
! TAGTAATTTGAATTTCCCAT+GGG + chr7.2:7892014-7892033 MS.gene007168:intron 25.0%
! TATAATATGTCATCAACACA+AGG + chr7.2:7892636-7892655 MS.gene007168:CDS 25.0%
! TATTACAAATTTCAGATGGA+TGG + chr7.2:7892059-7892078 MS.gene007168:intron 25.0%
! TATTAGACGATTGTTTATCA+CGG - chr7.2:7891758-7891777 None:intergenic 25.0%
!! GCATTTTCCGTATTTATTTA+TGG + chr7.2:7892387-7892406 MS.gene007168:intron 25.0%
!! TTAACGTTTTCAACGTTAAA+AGG + chr7.2:7892299-7892318 MS.gene007168:intron 25.0%
!!! TATAAGAGATTATAGTGGAT+AGG - chr7.2:7891653-7891672 None:intergenic 25.0%
AAAACATACATGCAACACAA+TGG - chr7.2:7892086-7892105 None:intergenic 30.0%
ACTGACAATATATATACCCA+TGG - chr7.2:7892033-7892052 None:intergenic 30.0%
CAAAGCTATGTTCTTACAAA+AGG + chr7.2:7891357-7891376 MS.gene007168:CDS 30.0%
CTAGTAATTTGAATTTCCCA+TGG + chr7.2:7892013-7892032 MS.gene007168:intron 30.0%
CTGACAATATATATACCCAT+GGG - chr7.2:7892032-7892051 None:intergenic 30.0%
GACATATTATAAGAGCAATC+TGG - chr7.2:7892627-7892646 None:intergenic 30.0%
TACAAGAAACAACATCACTA+TGG + chr7.2:7891022-7891041 MS.gene007168:CDS 30.0%
TACTGTTCCAATATGAATAC+CGG - chr7.2:7891335-7891354 None:intergenic 30.0%
TTAGACGAAAAGTTTAGGAA+GGG - chr7.2:7891858-7891877 None:intergenic 30.0%
TTTAGACGAAAAGTTTAGGA+AGG - chr7.2:7891859-7891878 None:intergenic 30.0%
!! ATGTTGTTTCTTGTATTGTG+TGG - chr7.2:7891017-7891036 None:intergenic 30.0%
!!! AGGTTTGTTACTAAGTTTTG+AGG + chr7.2:7891284-7891303 MS.gene007168:CDS 30.0%
AAAGATAAACGTCTTGATGC+TGG + chr7.2:7891396-7891415 MS.gene007168:CDS 35.0%
AAATAGTTCGAGTACTTCCA+GGG + chr7.2:7892515-7892534 MS.gene007168:CDS 35.0%
AAGAAACAACATCACTATGG+TGG + chr7.2:7891025-7891044 MS.gene007168:CDS 35.0%
AAGGGTAACTTCCAGTTATT+TGG + chr7.2:7892145-7892164 MS.gene007168:intron 35.0%
AGGGTAACTTCCAGTTATTT+GGG + chr7.2:7892146-7892165 MS.gene007168:intron 35.0%
ATAATGTGACCTAAAGTGTG+TGG + chr7.2:7892218-7892237 MS.gene007168:intron 35.0%
CTAGACTCAGAAGAAATCAA+AGG + chr7.2:7891264-7891283 MS.gene007168:CDS 35.0%
GCTATGTTCTTACAAAAGGT+TGG + chr7.2:7891361-7891380 MS.gene007168:CDS 35.0%
TGATTTCTTCTGAGTCTAGT+GGG - chr7.2:7891263-7891282 None:intergenic 35.0%
TTGATTTCTTCTGAGTCTAG+TGG - chr7.2:7891264-7891283 None:intergenic 35.0%
TTTCAACGTTAAAAGGTTGC+AGG + chr7.2:7892306-7892325 MS.gene007168:intron 35.0%
! GTTTGTTTCTTTCGCTTGTT+GGG + chr7.2:7892341-7892360 MS.gene007168:intron 35.0%
! TGTTTGTTTCTTTCGCTTGT+TGG + chr7.2:7892340-7892359 MS.gene007168:intron 35.0%
!! TATCTCTCAGCATGTTGTTT+TGG - chr7.2:7891237-7891256 None:intergenic 35.0%
!!! GTTGTTTTGGAATAACGAGT+CGG - chr7.2:7891224-7891243 None:intergenic 35.0%
AAAACCTGCATGGTATGACA+AGG - chr7.2:7891628-7891647 None:intergenic 40.0%
AAACCTGCATGGTATGACAA+GGG - chr7.2:7891627-7891646 None:intergenic 40.0%
AGCAATCTGGTGACAAAGTT+TGG - chr7.2:7892614-7892633 None:intergenic 40.0%
AGCTGAACTAGAAGATGATG+TGG + chr7.2:7891092-7891111 MS.gene007168:CDS 40.0%
CTAATTACTCGTGCACTATG+TGG - chr7.2:7891912-7891931 None:intergenic 40.0%
GAAATAGTTCGAGTACTTCC+AGG + chr7.2:7892514-7892533 MS.gene007168:CDS 40.0%
GCAATCTGGTGACAAAGTTT+GGG - chr7.2:7892613-7892632 None:intergenic 40.0%
GTACTCGAACTATTTCCACA+AGG - chr7.2:7892510-7892529 None:intergenic 40.0%
GTTGTAATGTGACAGGTGAA+GGG + chr7.2:7892460-7892479 MS.gene007168:intron 40.0%
TGGATAGGTAAAAACCTGCA+TGG - chr7.2:7891638-7891657 None:intergenic 40.0%
TGTGGTTGTGTTCTGACTTT+GGG - chr7.2:7892487-7892506 None:intergenic 40.0%
TGTTGTAATGTGACAGGTGA+AGG + chr7.2:7892459-7892478 MS.gene007168:intron 40.0%
! ACTTCCAGTTATTTGGGACT+TGG + chr7.2:7892152-7892171 MS.gene007168:intron 40.0%
! ATGTGATGGTGAGGATTTGA+AGG - chr7.2:7892705-7892724 None:intergenic 40.0%
! GGATGATGATGAGTAGGATA+AGG - chr7.2:7891606-7891625 None:intergenic 40.0%
!!! CTAAGTTTTGAGGATGAGTC+AGG + chr7.2:7891294-7891313 MS.gene007168:CDS 40.0%
AACGGTTGTTTATCTCGTGG+AGG + chr7.2:7891457-7891476 MS.gene007168:CDS 45.0%
ACAACCGTTGAGGATGTACA+CGG - chr7.2:7891446-7891465 None:intergenic 45.0%
AGCAGATCCATCTGTAGTGA+TGG + chr7.2:7891519-7891538 MS.gene007168:CDS 45.0%
AGGATGAGTCAGGTAAGTGT+TGG + chr7.2:7891304-7891323 MS.gene007168:CDS 45.0%
ATGGATCTGCTAACATGAGC+CGG - chr7.2:7891510-7891529 None:intergenic 45.0%
CACGAGATAAACAACCGTTG+AGG - chr7.2:7891456-7891475 None:intergenic 45.0%
CATTAACACCAAGCGACGTA+GGG + chr7.2:7891190-7891209 MS.gene007168:CDS 45.0%
CCATCTGTAGTGATGGCAAT+GGG + chr7.2:7891526-7891545 MS.gene007168:CDS 45.0%
CGAACTATTTCCACAAGGTG+TGG - chr7.2:7892505-7892524 None:intergenic 45.0%
CTCAACGGTTGTTTATCTCG+TGG + chr7.2:7891454-7891473 MS.gene007168:CDS 45.0%
GAGGATTTGAAGGAGGTTGA+CGG - chr7.2:7892695-7892714 None:intergenic 45.0%
GAGTAGAGTTACTACCATGG+CGG - chr7.2:7891485-7891504 None:intergenic 45.0%
GGAGGTTCCGGTATTCATAT+TGG + chr7.2:7891325-7891344 MS.gene007168:CDS 45.0%
GTAGTGATGGCAATGGGAAT+GGG + chr7.2:7891532-7891551 MS.gene007168:CDS 45.0%
GTGGAGTAGAGTTACTACCA+TGG - chr7.2:7891488-7891507 None:intergenic 45.0%
GTGTGGTTGTGTTCTGACTT+TGG - chr7.2:7892488-7892507 None:intergenic 45.0%
GTTGTTGACGTAGCATGTGA+TGG - chr7.2:7892719-7892738 None:intergenic 45.0%
TCCATCTGTAGTGATGGCAA+TGG + chr7.2:7891525-7891544 MS.gene007168:CDS 45.0%
TCCTCCAAGTCCCAAATAAC+TGG - chr7.2:7892159-7892178 None:intergenic 45.0%
TGCACGTGTTGTAATGTGAC+AGG + chr7.2:7892453-7892472 MS.gene007168:intron 45.0%
TGGTAGTAACTCTACTCCAC+CGG + chr7.2:7891488-7891507 MS.gene007168:CDS 45.0%
TGTAGTGATGGCAATGGGAA+TGG + chr7.2:7891531-7891550 MS.gene007168:CDS 45.0%
! ATTTGGGACTTGGAGGAATG+AGG + chr7.2:7892162-7892181 MS.gene007168:intron 45.0%
! GACAAGGGATGATGATGAGT+AGG - chr7.2:7891612-7891631 None:intergenic 45.0%
! TCCAGTTATTTGGGACTTGG+AGG + chr7.2:7892155-7892174 MS.gene007168:intron 45.0%
! TGATGGTGAGGATTTGAAGG+AGG - chr7.2:7892702-7892721 None:intergenic 45.0%
!! ATGAGTCAGGTAAGTGTTGG+AGG + chr7.2:7891307-7891326 MS.gene007168:CDS 45.0%
!! TTAATATTAATATTATTATC+AGG - chr7.2:7892576-7892595 None:intergenic 5.0%
!!! ATTTTATTCTTTTAAATAAA+GGG + chr7.2:7892127-7892146 MS.gene007168:intron 5.0%
!!! TATTTTATTCTTTTAAATAA+AGG + chr7.2:7892126-7892145 MS.gene007168:intron 5.0%
ATGCGCAGGATAGAGTTCTC+TGG - chr7.2:7891583-7891602 None:intergenic 50.0%
CAGAACACAACCACACCTTG+TGG + chr7.2:7892492-7892511 MS.gene007168:CDS 50.0%
CATCCCTTGTCATACCATGC+AGG + chr7.2:7891621-7891640 MS.gene007168:CDS 50.0%
CCATTAACACCAAGCGACGT+AGG + chr7.2:7891189-7891208 MS.gene007168:CDS 50.0%
CCCATTGCCATCACTACAGA+TGG - chr7.2:7891529-7891548 None:intergenic 50.0%
GACACCGTGTACATCCTCAA+CGG + chr7.2:7891439-7891458 MS.gene007168:CDS 50.0%
GATTTGAAGGAGGTTGACGG+TGG - chr7.2:7892692-7892711 None:intergenic 50.0%
GGAATAGCACTGTTCCTGTG+GGG + chr7.2:7891553-7891572 MS.gene007168:CDS 50.0%
GGGAATAGCACTGTTCCTGT+GGG + chr7.2:7891552-7891571 MS.gene007168:CDS 50.0%
TGAGTAGGATAAGGATGCGC+AGG - chr7.2:7891597-7891616 None:intergenic 50.0%
TGGGAATAGCACTGTTCCTG+TGG + chr7.2:7891551-7891570 MS.gene007168:CDS 50.0%
TTCAACTTCCCTACGTCGCT+TGG - chr7.2:7891201-7891220 None:intergenic 50.0%
! GAGGCTGTTTGGAGTGAACA+TGG + chr7.2:7892542-7892561 MS.gene007168:CDS 50.0%
! GGAGGTGGTGGTAGAATTGT+GGG - chr7.2:7892671-7892690 None:intergenic 50.0%
! TGACGTAGCATGTGATGGTG+AGG - chr7.2:7892714-7892733 None:intergenic 50.0%
! TGGAGGTGGTGGTAGAATTG+TGG - chr7.2:7892672-7892691 None:intergenic 50.0%
!! CAGGTAAGTGTTGGAGGTTC+CGG + chr7.2:7891313-7891332 MS.gene007168:CDS 50.0%
!! CCTACGTCGCTTGGTGTTAA+TGG - chr7.2:7891192-7891211 None:intergenic 50.0%
ATAGCACTGTTCCTGTGGGG+TGG + chr7.2:7891556-7891575 MS.gene007168:CDS 55.0%
GATCTGCTAACATGAGCCGG+TGG - chr7.2:7891507-7891526 None:intergenic 55.0%
GGCTTCACGCCACACACTTT+AGG - chr7.2:7892230-7892249 None:intergenic 55.0%
TTGAAGGAGGTTGACGGTGG+AGG - chr7.2:7892689-7892708 None:intergenic 55.0%
AAGGAGGTTGACGGTGGAGG+TGG - chr7.2:7892686-7892705 None:intergenic 60.0%
AGTTCTCTGGACCACCCCAC+AGG - chr7.2:7891570-7891589 None:intergenic 60.0%
CAACAAAAGCAGGCGCGCGT+AGG - chr7.2:7892251-7892270 None:intergenic 60.0%
TCCAAACAGCCTCAGCACCC+TGG - chr7.2:7892535-7892554 None:intergenic 60.0%
!! CGAGTACTTCCAGGGTGCTG+AGG + chr7.2:7892523-7892542 MS.gene007168:CDS 60.0%
!! TCCAGGGTGCTGAGGCTGTT+TGG + chr7.2:7892531-7892550 MS.gene007168:CDS 60.0%
GAGGTTGACGGTGGAGGTGG+TGG - chr7.2:7892683-7892702 None:intergenic 65.0%
!! ATCTCGTGGAGGCGCCGCCA+TGG + chr7.2:7891468-7891487 MS.gene007168:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 7891003 7892746 7891003 ID=MS.gene007168
chr7.2 mRNA 7891003 7892746 7891003 ID=MS.gene007168.t1;Parent=MS.gene007168
chr7.2 exon 7891003 7891642 7891003 ID=MS.gene007168.t1.exon1;Parent=MS.gene007168.t1
chr7.2 CDS 7891003 7891642 7891003 ID=cds.MS.gene007168.t1;Parent=MS.gene007168.t1
chr7.2 exon 7892475 7892746 7892475 ID=MS.gene007168.t1.exon2;Parent=MS.gene007168.t1
chr7.2 CDS 7892475 7892746 7892475 ID=cds.MS.gene007168.t1;Parent=MS.gene007168.t1
Gene Sequence

>MS.gene007168

ATGTCAATAAACCACACAATACAAGAAACAACATCACTATGGTGGAATCAACAACAACAACAACAAAGAACTCAACAAGATGCAGAAGAAGCTGAACTAGAAGATGATGTGGTTTTAGAATCAATAATGAAACTAAAAACAACAGAAGCATCATCAGAAGAAGAGAAAGAAGCTATGTTCGAGAAACCATTAACACCAAGCGACGTAGGGAAGTTGAACCGACTCGTTATTCCAAAACAACATGCTGAGAGATATTTCCCACTAGACTCAGAAGAAATCAAAGGTTTGTTACTAAGTTTTGAGGATGAGTCAGGTAAGTGTTGGAGGTTCCGGTATTCATATTGGAACAGTAGTCAAAGCTATGTTCTTACAAAAGGTTGGAGTCGTTATGTTAAAGATAAACGTCTTGATGCTGGTGATGTTGTTTTGTTTCAAAGACACCGTGTACATCCTCAACGGTTGTTTATCTCGTGGAGGCGCCGCCATGGTAGTAACTCTACTCCACCGGCTCATGTTAGCAGATCCATCTGTAGTGATGGCAATGGGAATGGGAATAGCACTGTTCCTGTGGGGTGGTCCAGAGAACTCTATCCTGCGCATCCTTATCCTACTCATCATCATCCCTTGTCATACCATGCAGGTTTTTACCTATCCACTATAATCTCTTATATACATTTCTAATTCATCATTCTCTCATATTCAATATTTTACTTAGAGGAGTAATTTTATATTTTAATTTTTTTTAAGAACATCCGTGATAAACAATCGTCTAATACTTCGTTTACTCATGTTTATTTTTTAAAATATTTTATATTAACTTTAATTTAAAAAAAAAAAAAAAAAAAATAAGTTCCCTTCCTAAACTTTTCGTCTAAACAATCTTTTATCATTTAAGTTATACTTACTCCACATAGTGCACGAGTAATTAGTCTTAAGATTTGAGTATCACGCTAAAAGACATTTTGCATTATTTAAAAAACAATTACTATGAGAGTAGTAAATAGACTTGACTAGTAATTTGAATTTCCCATGGGTATATATATTGTCAGTAAATTCTATTACAAATTTCAGATGGATGGTCCATTGTGTTGCATGTATGTTTTCTTTTATTTATTTAAACTTTTATTTTATTCTTTTAAATAAAGGGTAACTTCCAGTTATTTGGGACTTGGAGGAATGAGGACACACTAGCTAACATTTGTTTATAATTTCAGAATAATGTGACCTAAAGTGTGTGGCGTGAAGCCTACGCGCGCCTGCTTTTGTTGAATTTAATTTAACATAGTAAAAGTAAAATTAACGTTTTCAACGTTAAAAGGTTGCAGGACATGTTCATTTGTTTGTTTCTTTCGCTTGTTGGGTCTTGATCAATAGAAATTTAAATGCATTTTCCGTATTTATTTATGGTTTTGATTTGATTTTTTGAATTGAAAATGAATGTATGGGCATTTGCACGTGTTGTAATGTGACAGGTGAAGGGTCCCAAAGTCAGAACACAACCACACCTTGTGGAAATAGTTCGAGTACTTCCAGGGTGCTGAGGCTGTTTGGAGTGAACATGGAATGCCAACCTGATAATAATATTAATATTAACAATATTAATGATTCCCAAACTTTGTCACCAGATTGCTCTTATAATATGTCATCAACACAAGGCACAGCTATCCCACAATTCTACCACCACCTCCACCGTCAACCTCCTTCAAATCCTCACCATCACATGCTACGTCAACAACCATATTAG
Protein sequence

>MS.gene007168.t1

MSINHTIQETTSLWWNQQQQQQRTQQDAEEAELEDDVVLESIMKLKTTEASSEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAERYFPLDSEEIKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRVHPQRLFISWRRRHGSNSTPPAHVSRSICSDGNGNGNSTVPVGWSRELYPAHPYPTHHHPLSYHAGEGSQSQNTTTPCGNSSSTSRVLRLFGVNMECQPDNNININNINDSQTLSPDCSYNMSSTQGTAIPQFYHHLHRQPPSNPHHHMLRQQPY