Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007299.t1 | RHN48623.1 | 99.7 | 289 | 1 | 0 | 1 | 289 | 1 | 289 | 1.60E-124 | 455.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007299.t1 | Q6V9I6 | 51.0 | 290 | 117 | 8 | 1 | 288 | 1 | 267 | 6.0e-35 | 149.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007299.t1 | A0A396H772 | 99.7 | 289 | 1 | 0 | 1 | 289 | 1 | 289 | 1.2e-124 | 455.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene007299.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007299.t1 | MTR_2g084815 | 43.087 | 311 | 146 | 7 | 1 | 289 | 1 | 302 | 3.07e-52 | 173 |
MS.gene007299.t1 | MTR_2g084815 | 40.193 | 311 | 132 | 7 | 1 | 289 | 1 | 279 | 1.36e-44 | 152 |
MS.gene007299.t1 | MTR_2g084815 | 43.725 | 247 | 113 | 6 | 1 | 225 | 1 | 243 | 1.63e-33 | 123 |
MS.gene007299.t1 | MTR_4g055440 | 39.200 | 250 | 133 | 6 | 1 | 247 | 5 | 238 | 5.60e-33 | 122 |
MS.gene007299.t1 | MTR_2g084815 | 50.376 | 133 | 58 | 3 | 1 | 129 | 1 | 129 | 1.30e-30 | 115 |
MS.gene007299.t1 | MTR_4g055450 | 44.211 | 95 | 39 | 2 | 2 | 94 | 6 | 88 | 5.84e-17 | 80.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007299.t1 | AT5G03740 | 44.040 | 302 | 145 | 10 | 1 | 288 | 1 | 292 | 1.51e-47 | 160 |
MS.gene007299.t1 | AT3G44750 | 55.319 | 94 | 41 | 1 | 1 | 94 | 1 | 93 | 1.69e-27 | 107 |
MS.gene007299.t1 | AT3G44750 | 55.319 | 94 | 41 | 1 | 1 | 94 | 1 | 93 | 1.81e-27 | 107 |
MS.gene007299.t1 | AT5G22650 | 36.054 | 294 | 152 | 9 | 1 | 269 | 1 | 283 | 7.45e-25 | 101 |
MS.gene007299.t1 | AT5G22650 | 36.120 | 299 | 146 | 11 | 1 | 269 | 1 | 284 | 2.08e-23 | 97.8 |
MS.gene007299.t1 | AT2G27840 | 42.708 | 96 | 51 | 3 | 1 | 94 | 1 | 94 | 4.71e-17 | 77.0 |
MS.gene007299.t1 | AT2G27840 | 42.708 | 96 | 51 | 3 | 1 | 94 | 1 | 94 | 6.74e-17 | 77.8 |
MS.gene007299.t1 | AT2G27840 | 42.708 | 96 | 51 | 3 | 1 | 94 | 1 | 94 | 2.34e-16 | 74.7 |
Find 66 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTCTGCAGTCATGGAGTTT+TGG | 0.186768 | 7.3:+10392070 | None:intergenic |
CGCTCCCATATTTCCAGTTA+TGG | 0.260338 | 7.3:-10393704 | None:intergenic |
CTATCCCATAACTGGAAATA+TGG | 0.264248 | 7.3:+10393699 | MS.gene007299:CDS |
CTTTATATGACAGGCATGTT+TGG | 0.291541 | 7.3:+10393536 | MS.gene007299:intron |
TTTGGAGTCTCCTGCTTCTC+TGG | 0.303491 | 7.3:-10395955 | None:intergenic |
TTTATATGACAGGCATGTTT+GGG | 0.313274 | 7.3:+10393537 | MS.gene007299:intron |
TGCCTTAGGTTCTCATAATA+AGG | 0.315168 | 7.3:+10396122 | MS.gene007299:CDS |
CAACTCCAATCACCTGTTAC+AGG | 0.322194 | 7.3:-10396004 | None:intergenic |
CAATATAAAATAGTATTAAA+AGG | 0.325816 | 7.3:-10393777 | None:intergenic |
CCTTCACTTGGCACTGTGCT+TGG | 0.346567 | 7.3:-10396145 | None:intergenic |
GGGGAGGTCAGCAAGGATAA+AGG | 0.362925 | 7.3:+10393558 | MS.gene007299:CDS |
AATTTGAGCTATCCCATAAC+TGG | 0.378730 | 7.3:+10393691 | MS.gene007299:CDS |
GCAGATTTACCAGCCTGCTT+AGG | 0.386812 | 7.3:-10395916 | None:intergenic |
GCTCCCATATTTCCAGTTAT+GGG | 0.386902 | 7.3:-10393703 | None:intergenic |
TGATGCATTTACAACGGGTT+TGG | 0.397107 | 7.3:-10394177 | None:intergenic |
TAGTCTCCAGTTACCTTCTT+CGG | 0.410069 | 7.3:-10395134 | None:intergenic |
AAAGGATATGAATCATGTTC+CGG | 0.414891 | 7.3:-10393759 | None:intergenic |
TTTGCCTTCTTCACAGGTAC+AGG | 0.429781 | 7.3:-10395256 | None:intergenic |
TTTAAGACTGAAGATGCCTT+AGG | 0.434410 | 7.3:+10396108 | MS.gene007299:CDS |
CAGATTTACCAGCCTGCTTA+GGG | 0.438934 | 7.3:-10395915 | None:intergenic |
ACAGCTGCAAGCCCTGTAAC+AGG | 0.439457 | 7.3:+10395992 | MS.gene007299:CDS |
CACAGGTACAGGTGTTTCCT+TGG | 0.451744 | 7.3:-10395245 | None:intergenic |
ATTCCACTTAATGCTGCTAA+TGG | 0.460106 | 7.3:+10394041 | MS.gene007299:CDS |
GACCATCAAACTTCACATAC+AGG | 0.460737 | 7.3:-10393596 | None:intergenic |
AACTTCACATACAGGGATAC+CGG | 0.463337 | 7.3:-10393588 | None:intergenic |
TAATAAGCAGCCAGAGAAGC+AGG | 0.473969 | 7.3:+10395945 | MS.gene007299:CDS |
GGGAGGTCAGCAAGGATAAA+GGG | 0.482905 | 7.3:+10393559 | MS.gene007299:CDS |
ATTTAGAATCGAATGCGAAC+CGG | 0.485135 | 7.3:+10393740 | MS.gene007299:CDS |
TCCCTGTATGTGAAGTTTGA+TGG | 0.494576 | 7.3:+10393594 | MS.gene007299:CDS |
TATCCCATAACTGGAAATAT+GGG | 0.497848 | 7.3:+10393700 | MS.gene007299:CDS |
TTACCATTAGCAGCATTAAG+TGG | 0.498727 | 7.3:-10394044 | None:intergenic |
TTAGGTGTTGAGGTAAAACT+TGG | 0.502777 | 7.3:+10393376 | MS.gene007299:intron |
CTGTAATCTCCACTAGACTT+TGG | 0.505848 | 7.3:-10395973 | None:intergenic |
TTACCAGCCTGCTTAGGGTA+AGG | 0.510729 | 7.3:-10395910 | None:intergenic |
GATGGTCAGAAGCTTCAACT+TGG | 0.513400 | 7.3:+10393612 | MS.gene007299:CDS |
GGCCTTATTATGAGAACCTA+AGG | 0.516695 | 7.3:-10396124 | None:intergenic |
AACACCTGTACCTGTGAAGA+AGG | 0.532518 | 7.3:+10395252 | MS.gene007299:CDS |
GCACCATTCACCTCCAACAC+AGG | 0.534916 | 7.3:-10394155 | None:intergenic |
TGATACTCCTTACCCTAAGC+AGG | 0.550019 | 7.3:+10395903 | MS.gene007299:CDS |
CCAAGCACAGTGCCAAGTGA+AGG | 0.555760 | 7.3:+10396145 | MS.gene007299:CDS |
TTTGTCACTCCAGAGAAGAC+TGG | 0.556582 | 7.3:+10395280 | MS.gene007299:CDS |
CGAGCTTATCCACATTTCAT+CGG | 0.569171 | 7.3:+10393429 | MS.gene007299:CDS |
TTTAGATACTGATTCTGAAG+AGG | 0.569513 | 7.3:+10394013 | MS.gene007299:intron |
CAGTTCAGATTCATCTGATG+AGG | 0.575058 | 7.3:+10394238 | MS.gene007299:CDS |
TGTAGGGAAACCTGTGTTGG+AGG | 0.575298 | 7.3:+10394145 | MS.gene007299:intron |
ACTCCTTACCCTAAGCAGGC+TGG | 0.582053 | 7.3:+10395907 | MS.gene007299:CDS |
AAACCTGTGTTGGAGGTGAA+TGG | 0.584764 | 7.3:+10394152 | MS.gene007299:CDS |
TTATGTAGGGAAACCTGTGT+TGG | 0.588328 | 7.3:+10394142 | MS.gene007299:intron |
GTCGTTTAGCTCATGGCGAA+TGG | 0.589514 | 7.3:+10395056 | MS.gene007299:intron |
AACTCCAATCACCTGTTACA+GGG | 0.600270 | 7.3:-10396003 | None:intergenic |
CAGGAGACTCCAAAGTCTAG+TGG | 0.603055 | 7.3:+10395964 | MS.gene007299:CDS |
GAGGGTTGCTGAATCTTCCA+AGG | 0.606410 | 7.3:+10395228 | MS.gene007299:CDS |
AGACTGAAGGGAGCAACAAG+AGG | 0.612717 | 7.3:+10395209 | MS.gene007299:intron |
TGAGGATTCTAGTGAAGATG+AGG | 0.614205 | 7.3:+10394256 | MS.gene007299:CDS |
AAGCATATACCGATGAAATG+TGG | 0.617686 | 7.3:-10393438 | None:intergenic |
AAAACTTGGTGAATCACTCA+AGG | 0.619144 | 7.3:+10393390 | MS.gene007299:CDS |
TGATGAGGAGACACCGAAGA+AGG | 0.620434 | 7.3:+10395121 | MS.gene007299:CDS |
ACTTCACATACAGGGATACC+GGG | 0.620641 | 7.3:-10393587 | None:intergenic |
GACTGAAGGGAGCAACAAGA+GGG | 0.623418 | 7.3:+10395210 | MS.gene007299:intron |
ACCATCAAACTTCACATACA+GGG | 0.624265 | 7.3:-10393595 | None:intergenic |
AAGCGATGAAGATTCTGATG+AGG | 0.625838 | 7.3:+10395106 | MS.gene007299:CDS |
TATATGACAGGCATGTTTGG+GGG | 0.631765 | 7.3:+10393539 | MS.gene007299:intron |
TTATATGACAGGCATGTTTG+GGG | 0.632570 | 7.3:+10393538 | MS.gene007299:intron |
CAAGGATAAAGGGAGTGACC+CGG | 0.634157 | 7.3:+10393569 | MS.gene007299:CDS |
ACCAAATCAAAAGATGTCTG+AGG | 0.650289 | 7.3:-10393657 | None:intergenic |
TAGGGTAAGGAGTATCAACG+TGG | 0.788217 | 7.3:-10395897 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATATTTAAAATATTTAAT+TGG | - | chr7.3:10394891-10394910 | None:intergenic | 0.0% |
!! | CAATATAAAATAGTATTAAA+AGG | - | chr7.3:10393780-10393799 | None:intergenic | 10.0% |
!!! | TATTTTGTTAAATAATAACA+TGG | + | chr7.3:10393221-10393240 | MS.gene007299:intron | 10.0% |
!! | ATATTTGTACCAAAAATTAA+TGG | + | chr7.3:10394535-10394554 | MS.gene007299:intron | 15.0% |
!! | CTCAAAATTAAATTCAAATT+CGG | - | chr7.3:10395180-10395199 | None:intergenic | 15.0% |
!! | TCAATAAAAAATTCAGTAAT+CGG | - | chr7.3:10394992-10395011 | None:intergenic | 15.0% |
!! | TTAATTTAATGATTGAATCA+GGG | + | chr7.3:10394914-10394933 | MS.gene007299:intron | 15.0% |
!!! | ATATCTTATTTTATCAATGT+TGG | - | chr7.3:10395432-10395451 | None:intergenic | 15.0% |
!!! | ATTACTGAATTTTTTATTGA+AGG | + | chr7.3:10394992-10395011 | MS.gene007299:intron | 15.0% |
!!! | ATTCATATTTTAGTTTGTTT+TGG | + | chr7.3:10395027-10395046 | MS.gene007299:intron | 15.0% |
!!! | CATATATAACCATTAATTTT+TGG | - | chr7.3:10394547-10394566 | None:intergenic | 15.0% |
!!! | TGATTTTGTTTTTTTCAAAA+AGG | - | chr7.3:10392180-10392199 | None:intergenic | 15.0% |
!!! | TGTTTTCTAAAGAAATTTTT+TGG | - | chr7.3:10394516-10394535 | None:intergenic | 15.0% |
!!! | TTTCAATATATAATGGATAT+TGG | + | chr7.3:10394303-10394322 | MS.gene007299:intron | 15.0% |
!! | AAAAATGTAAAGTGATAGAA+AGG | - | chr7.3:10392115-10392134 | None:intergenic | 20.0% |
!! | AAGATAAAAGAATGTAGTTA+AGG | - | chr7.3:10393870-10393889 | None:intergenic | 20.0% |
!! | AGATAAAAAAAATCCAAAGA+AGG | - | chr7.3:10393308-10393327 | None:intergenic | 20.0% |
!! | ATACATGCTTAAACAAAATT+AGG | - | chr7.3:10392482-10392501 | None:intergenic | 20.0% |
!! | ATGAAAAACTGAATAACAAA+TGG | - | chr7.3:10393073-10393092 | None:intergenic | 20.0% |
!! | GTTAATTTAATGATTGAATC+AGG | + | chr7.3:10394913-10394932 | MS.gene007299:intron | 20.0% |
!! | TAATTTAATGATTGAATCAG+GGG | + | chr7.3:10394915-10394934 | MS.gene007299:intron | 20.0% |
!! | TCTTGTTGCTAAATTAATAT+TGG | + | chr7.3:10393325-10393344 | MS.gene007299:intron | 20.0% |
!! | TTGAATTAAATGAAATGCTA+CGG | + | chr7.3:10394415-10394434 | MS.gene007299:intron | 20.0% |
!! | TTTCATGTATAAATATCGTT+AGG | + | chr7.3:10392277-10392296 | MS.gene007299:intron | 20.0% |
!!! | AAGTGGATTTCAATATATAA+TGG | + | chr7.3:10394296-10394315 | MS.gene007299:intron | 20.0% |
!!! | AATAACATGGTTTTTAAGAT+GGG | + | chr7.3:10393234-10393253 | MS.gene007299:intron | 20.0% |
!!! | ATAAACTATTCTCAGTTTTA+TGG | - | chr7.3:10392752-10392771 | None:intergenic | 20.0% |
!!! | ATTGTTCTAAACATTTATGT+AGG | + | chr7.3:10394128-10394147 | MS.gene007299:intron | 20.0% |
!!! | CGTTAATGTTTTTGTATAAA+TGG | + | chr7.3:10393505-10393524 | MS.gene007299:intron | 20.0% |
!!! | TAATAACATGGTTTTTAAGA+TGG | + | chr7.3:10393233-10393252 | MS.gene007299:intron | 20.0% |
!!! | TTGTTATTCAGTTTTTCATT+TGG | + | chr7.3:10393074-10393093 | MS.gene007299:intron | 20.0% |
!!! | TTGTTCTAAACATTTATGTA+GGG | + | chr7.3:10394129-10394148 | MS.gene007299:intron | 20.0% |
!!! | TTTGTTTTCTAATTGTACTT+CGG | - | chr7.3:10395755-10395774 | None:intergenic | 20.0% |
! | AAAACAGAAAAAGAATCAGA+AGG | + | chr7.3:10394199-10394218 | MS.gene007299:CDS | 25.0% |
! | AAAACTAACAAACAAAGTAC+TGG | - | chr7.3:10395318-10395337 | None:intergenic | 25.0% |
! | AAAACTGAATAACAAATGGT+AGG | - | chr7.3:10393069-10393088 | None:intergenic | 25.0% |
! | AAACTGAATAACAAATGGTA+GGG | - | chr7.3:10393068-10393087 | None:intergenic | 25.0% |
! | AATCCACTTTCTAGATTATA+CGG | - | chr7.3:10394285-10394304 | None:intergenic | 25.0% |
! | AATTTAATGATTGAATCAGG+GGG | + | chr7.3:10394916-10394935 | MS.gene007299:intron | 25.0% |
! | ATATAAAACTCCTTTCATGA+GGG | - | chr7.3:10393190-10393209 | None:intergenic | 25.0% |
! | ATTAACAAAGTAGAACTGAA+AGG | + | chr7.3:10395831-10395850 | MS.gene007299:intron | 25.0% |
! | CAAAAACATTAACGATTCAA+TGG | - | chr7.3:10393499-10393518 | None:intergenic | 25.0% |
! | CAATGTAATAGAAACTAAAG+AGG | - | chr7.3:10393164-10393183 | None:intergenic | 25.0% |
! | CTAAAAACTCATTCACATAA+AGG | - | chr7.3:10394742-10394761 | None:intergenic | 25.0% |
! | GACAATAGAAATGCATAAAA+TGG | - | chr7.3:10394084-10394103 | None:intergenic | 25.0% |
! | GCAATATCAAATTATTTCAG+CGG | + | chr7.3:10393263-10393282 | MS.gene007299:intron | 25.0% |
! | TAAAGGAAGTCAAAACAATT+TGG | - | chr7.3:10394725-10394744 | None:intergenic | 25.0% |
! | TAATATTGTGTTTCCTTCTT+TGG | + | chr7.3:10393292-10393311 | MS.gene007299:intron | 25.0% |
! | TAATGTCATCTAGATGTATA+AGG | + | chr7.3:10395455-10395474 | MS.gene007299:intron | 25.0% |
! | TACAGAATATTGTCAAATAG+CGG | - | chr7.3:10392596-10392615 | None:intergenic | 25.0% |
! | TACGGAAAAATACAAATGTA+GGG | + | chr7.3:10394433-10394452 | MS.gene007299:intron | 25.0% |
! | TTTAATATACGATGTAGACT+TGG | + | chr7.3:10394961-10394980 | MS.gene007299:intron | 25.0% |
!! | AAACTAACAAACAAAGTACT+GGG | - | chr7.3:10395317-10395336 | None:intergenic | 25.0% |
!! | ACGAGAATTATGATATTTTC+AGG | + | chr7.3:10395859-10395878 | MS.gene007299:intron | 25.0% |
!! | TTAGTGACAATTTTGTCTTT+TGG | + | chr7.3:10395694-10395713 | MS.gene007299:intron | 25.0% |
!!! | ACATCTTTTGATTTGGTTTT+TGG | + | chr7.3:10393663-10393682 | MS.gene007299:CDS | 25.0% |
!!! | AGAATTATGATATTTTCAGG+TGG | + | chr7.3:10395862-10395881 | MS.gene007299:intron | 25.0% |
!!! | CATCTTTTGATTTGGTTTTT+GGG | + | chr7.3:10393664-10393683 | MS.gene007299:CDS | 25.0% |
!!! | TACACAACATTGATTTAAAC+AGG | - | chr7.3:10392514-10392533 | None:intergenic | 25.0% |
!!! | TGAGAGTTTTATTACACTTT+CGG | + | chr7.3:10392831-10392850 | MS.gene007299:intron | 25.0% |
!!! | TTGCAGTTTTTGGATAAAAA+TGG | + | chr7.3:10392302-10392321 | MS.gene007299:intron | 25.0% |
AAAACATTCCTGTGATGATT+CGG | + | chr7.3:10394583-10394602 | MS.gene007299:intron | 30.0% | |
AAAGGATATGAATCATGTTC+CGG | - | chr7.3:10393762-10393781 | None:intergenic | 30.0% | |
AACTGAATAACAAATGGTAG+GGG | - | chr7.3:10393067-10393086 | None:intergenic | 30.0% | |
AATACTAATTGGGTAGAAGA+AGG | + | chr7.3:10394463-10394482 | MS.gene007299:intron | 30.0% | |
AATGTAAAGTGATAGAAAGG+AGG | - | chr7.3:10392112-10392131 | None:intergenic | 30.0% | |
ACATTCCTACTTAAAAGTGA+AGG | + | chr7.3:10394679-10394698 | MS.gene007299:intron | 30.0% | |
ACTTACAAAATAGATGAAGC+TGG | + | chr7.3:10394615-10394634 | MS.gene007299:intron | 30.0% | |
ATATTAGAACGCATTGTTGT+TGG | - | chr7.3:10393827-10393846 | None:intergenic | 30.0% | |
CTACGGAAAAATACAAATGT+AGG | + | chr7.3:10394432-10394451 | MS.gene007299:intron | 30.0% | |
GATATAAAACTCCTTTCATG+AGG | - | chr7.3:10393191-10393210 | None:intergenic | 30.0% | |
GTCAGAAAATATTTAACACG+TGG | - | chr7.3:10395659-10395678 | None:intergenic | 30.0% | |
GTCTCAAATCTTTATATGAC+AGG | + | chr7.3:10393527-10393546 | MS.gene007299:intron | 30.0% | |
TAACCGTATAATCTAGAAAG+TGG | + | chr7.3:10394279-10394298 | MS.gene007299:intron | 30.0% | |
TATAAAACTCCTTTCATGAG+GGG | - | chr7.3:10393189-10393208 | None:intergenic | 30.0% | |
TATCCCATAACTGGAAATAT+GGG | + | chr7.3:10393700-10393719 | MS.gene007299:CDS | 30.0% | |
TGCATAAAATTGCATTGTTG+TGG | + | chr7.3:10395515-10395534 | MS.gene007299:intron | 30.0% | |
TTATGCAATAACAGTGCAAA+GGG | - | chr7.3:10395502-10395521 | None:intergenic | 30.0% | |
TTCGACACTAATGTTGTATA+CGG | + | chr7.3:10395380-10395399 | MS.gene007299:intron | 30.0% | |
TTGTTAAATTGCAACTACAG+CGG | - | chr7.3:10392677-10392696 | None:intergenic | 30.0% | |
TTTAATTCAATAACTGCAGC+TGG | - | chr7.3:10394405-10394424 | None:intergenic | 30.0% | |
TTTATATGACAGGCATGTTT+GGG | + | chr7.3:10393537-10393556 | MS.gene007299:intron | 30.0% | |
TTTATGCAATAACAGTGCAA+AGG | - | chr7.3:10395503-10395522 | None:intergenic | 30.0% | |
! | TAAAAATGGTGGAAATGTGA+TGG | + | chr7.3:10392316-10392335 | MS.gene007299:intron | 30.0% |
! | TACAACATTAGTGTCGAATA+AGG | - | chr7.3:10395378-10395397 | None:intergenic | 30.0% |
! | TCACAAATCACTATCCTTTT+AGG | + | chr7.3:10393358-10393377 | MS.gene007299:intron | 30.0% |
! | TGTTTAGAACAATATGACAC+AGG | - | chr7.3:10394121-10394140 | None:intergenic | 30.0% |
!! | AAACACCTTCACTTTTAAGT+AGG | - | chr7.3:10394687-10394706 | None:intergenic | 30.0% |
!! | AACTAACAAACAAAGTACTG+GGG | - | chr7.3:10395316-10395335 | None:intergenic | 30.0% |
!! | CAGTTTTTGGATAAAAATGG+TGG | + | chr7.3:10392305-10392324 | MS.gene007299:intron | 30.0% |
!! | GAAAGGAGTTTTATATCACT+GGG | + | chr7.3:10393194-10393213 | MS.gene007299:intron | 30.0% |
!! | TGAAAGGAGTTTTATATCAC+TGG | + | chr7.3:10393193-10393212 | MS.gene007299:intron | 30.0% |
!! | TTTAGATACTGATTCTGAAG+AGG | + | chr7.3:10394013-10394032 | MS.gene007299:intron | 30.0% |
!!! | AGAGTTTTATTACACTTTCG+GGG | + | chr7.3:10392833-10392852 | MS.gene007299:intron | 30.0% |
!!! | CACAATTTTATTTTGACTGC+AGG | + | chr7.3:10396082-10396101 | MS.gene007299:intron | 30.0% |
!!! | CTGTTTTGATGCATTTACAA+CGG | - | chr7.3:10394186-10394205 | None:intergenic | 30.0% |
!!! | GAGAGTTTTATTACACTTTC+GGG | + | chr7.3:10392832-10392851 | MS.gene007299:intron | 30.0% |
!!! | GAGTTTTGTTTTAGACTGAA+GGG | + | chr7.3:10395197-10395216 | MS.gene007299:intron | 30.0% |
!!! | TGAGTTTTGTTTTAGACTGA+AGG | + | chr7.3:10395196-10395215 | MS.gene007299:intron | 30.0% |
!!! | TGTTTTGATGCATTTACAAC+GGG | - | chr7.3:10394185-10394204 | None:intergenic | 30.0% |
AAAAACTAACCAGTCTTCTC+TGG | - | chr7.3:10395292-10395311 | None:intergenic | 35.0% | |
AAAATACAAATGTAGGGCAC+TGG | + | chr7.3:10394439-10394458 | MS.gene007299:intron | 35.0% | |
AAACATTCCTGTGATGATTC+GGG | + | chr7.3:10394584-10394603 | MS.gene007299:intron | 35.0% | |
AACTACTTTGTGACTTATGC+TGG | + | chr7.3:10395608-10395627 | MS.gene007299:intron | 35.0% | |
AAGCATATACCGATGAAATG+TGG | - | chr7.3:10393441-10393460 | None:intergenic | 35.0% | |
AATTTGAGCTATCCCATAAC+TGG | + | chr7.3:10393691-10393710 | MS.gene007299:CDS | 35.0% | |
ACAAAATAGATGAAGCTGGT+CGG | + | chr7.3:10394619-10394638 | MS.gene007299:intron | 35.0% | |
ACAGGATTATGAGGACAATT+TGG | - | chr7.3:10394822-10394841 | None:intergenic | 35.0% | |
ACCAAATCAAAAGATGTCTG+AGG | - | chr7.3:10393660-10393679 | None:intergenic | 35.0% | |
ACCATCAAACTTCACATACA+GGG | - | chr7.3:10393598-10393617 | None:intergenic | 35.0% | |
ACCATGAAAACAGGATTATG+AGG | - | chr7.3:10394831-10394850 | None:intergenic | 35.0% | |
AGATGTATAAGGTTTGACAG+TGG | + | chr7.3:10395466-10395485 | MS.gene007299:intron | 35.0% | |
AGTTCCTAGAATCATCTTGA+AGG | + | chr7.3:10392801-10392820 | MS.gene007299:intron | 35.0% | |
ATTCCACTTAATGCTGCTAA+TGG | + | chr7.3:10394041-10394060 | MS.gene007299:CDS | 35.0% | |
CATCGAACAACTTTGTGTAT+CGG | - | chr7.3:10394371-10394390 | None:intergenic | 35.0% | |
CGTGAGGATGATGATAATTA+GGG | - | chr7.3:10392375-10392394 | None:intergenic | 35.0% | |
CTAAAGCACAAAATGTTCTG+TGG | - | chr7.3:10392404-10392423 | None:intergenic | 35.0% | |
CTATCCCATAACTGGAAATA+TGG | + | chr7.3:10393699-10393718 | MS.gene007299:CDS | 35.0% | |
CTTTATATGACAGGCATGTT+TGG | + | chr7.3:10393536-10393555 | MS.gene007299:intron | 35.0% | |
GATAAGAGTTATCAACTCTG+TGG | + | chr7.3:10394864-10394883 | MS.gene007299:intron | 35.0% | |
GTTCCTAGAATCATCTTGAA+GGG | + | chr7.3:10392802-10392821 | MS.gene007299:intron | 35.0% | |
TAAGTGTGTATAGAACGATG+AGG | - | chr7.3:10396054-10396073 | None:intergenic | 35.0% | |
TAGAAGAAGGTAGGAATACT+TGG | + | chr7.3:10394476-10394495 | MS.gene007299:intron | 35.0% | |
TCGTGAGGATGATGATAATT+AGG | - | chr7.3:10392376-10392395 | None:intergenic | 35.0% | |
TGATAGAAAGGAGGAAGAAA+CGG | - | chr7.3:10392103-10392122 | None:intergenic | 35.0% | |
TGCCTTAGGTTCTCATAATA+AGG | + | chr7.3:10396122-10396141 | MS.gene007299:CDS | 35.0% | |
TGGATTGTTAAAATTCCGCT+AGG | + | chr7.3:10392545-10392564 | MS.gene007299:intron | 35.0% | |
TGTTGTGTAATTGCAGTTAG+TGG | + | chr7.3:10392525-10392544 | MS.gene007299:intron | 35.0% | |
TTACCATTAGCAGCATTAAG+TGG | - | chr7.3:10394047-10394066 | None:intergenic | 35.0% | |
TTATATGACAGGCATGTTTG+GGG | + | chr7.3:10393538-10393557 | MS.gene007299:intron | 35.0% | |
! | AAAACTTGGTGAATCACTCA+AGG | + | chr7.3:10393390-10393409 | MS.gene007299:CDS | 35.0% |
! | ACAAATTTTGCCTTCTTCAC+AGG | - | chr7.3:10395265-10395284 | None:intergenic | 35.0% |
! | ATTAGTGTCGAATAAGGCTT+AGG | - | chr7.3:10395372-10395391 | None:intergenic | 35.0% |
! | ATTTAGAATCGAATGCGAAC+CGG | + | chr7.3:10393740-10393759 | MS.gene007299:CDS | 35.0% |
! | CACAGAACATTTTGTGCTTT+AGG | + | chr7.3:10392402-10392421 | MS.gene007299:intron | 35.0% |
! | CATAATCCTGTTTTCATGGT+CGG | + | chr7.3:10394831-10394850 | MS.gene007299:intron | 35.0% |
! | GTTTTACCTCAACACCTAAA+AGG | - | chr7.3:10393375-10393394 | None:intergenic | 35.0% |
! | TCCTCATAATCCTGTTTTCA+TGG | + | chr7.3:10394827-10394846 | MS.gene007299:intron | 35.0% |
! | TCGTTAGGTTTTGCAGTTTT+TGG | + | chr7.3:10392292-10392311 | MS.gene007299:intron | 35.0% |
! | TTAGTGTCGAATAAGGCTTA+GGG | - | chr7.3:10395371-10395390 | None:intergenic | 35.0% |
! | TTTAAGACTGAAGATGCCTT+AGG | + | chr7.3:10396108-10396127 | MS.gene007299:CDS | 35.0% |
!! | TCCTCAGACATCTTTTGATT+TGG | + | chr7.3:10393656-10393675 | MS.gene007299:CDS | 35.0% |
!! | TTAGGTGTTGAGGTAAAACT+TGG | + | chr7.3:10393376-10393395 | MS.gene007299:intron | 35.0% |
!!! | CGTTGTTTTGGACCTATAAA+AGG | + | chr7.3:10392858-10392877 | MS.gene007299:intron | 35.0% |
!!! | TTATGATATTTTCAGGTGGC+AGG | + | chr7.3:10395866-10395885 | MS.gene007299:intron | 35.0% |
AAAGTGGTGAGAGAACATTG+TGG | - | chr7.3:10395554-10395573 | None:intergenic | 40.0% | |
AACTCCAATCACCTGTTACA+GGG | - | chr7.3:10396006-10396025 | None:intergenic | 40.0% | |
AACTTCACATACAGGGATAC+CGG | - | chr7.3:10393591-10393610 | None:intergenic | 40.0% | |
AAGCGATGAAGATTCTGATG+AGG | + | chr7.3:10395106-10395125 | MS.gene007299:CDS | 40.0% | |
AAGTGGTGAGAGAACATTGT+GGG | - | chr7.3:10395553-10395572 | None:intergenic | 40.0% | |
ACAAATTAACGAGTCCAACG+AGG | - | chr7.3:10395797-10395816 | None:intergenic | 40.0% | |
ACCTATAAAAGGTCACTGGT+TGG | + | chr7.3:10392869-10392888 | MS.gene007299:intron | 40.0% | |
AGTCCCTTCAAGATGATTCT+AGG | - | chr7.3:10392808-10392827 | None:intergenic | 40.0% | |
AGTGAAGATGAAGCTTCTGA+TGG | + | chr7.3:10393895-10393914 | MS.gene007299:intron | 40.0% | |
AGTGAATCGCAGAGTAATAG+TGG | + | chr7.3:10392625-10392644 | MS.gene007299:intron | 40.0% | |
ATGGAGCAGCTATTGCTTTA+TGG | + | chr7.3:10395582-10395601 | MS.gene007299:intron | 40.0% | |
CAGTTCAGATTCATCTGATG+AGG | + | chr7.3:10394238-10394257 | MS.gene007299:CDS | 40.0% | |
CGAGCTTATCCACATTTCAT+CGG | + | chr7.3:10393429-10393448 | MS.gene007299:CDS | 40.0% | |
CGATACACAAAGTTGTTCGA+TGG | + | chr7.3:10394369-10394388 | MS.gene007299:intron | 40.0% | |
CTAATTGGGTAGAAGAAGGT+AGG | + | chr7.3:10394467-10394486 | MS.gene007299:intron | 40.0% | |
CTGTAATCTCCACTAGACTT+TGG | - | chr7.3:10395976-10395995 | None:intergenic | 40.0% | |
GACCATCAAACTTCACATAC+AGG | - | chr7.3:10393599-10393618 | None:intergenic | 40.0% | |
GAGACATGAGGATCTAATAG+AGG | - | chr7.3:10392921-10392940 | None:intergenic | 40.0% | |
GAGGTTGAAAAAGACAGAAG+AGG | - | chr7.3:10393145-10393164 | None:intergenic | 40.0% | |
GCTCCCATATTTCCAGTTAT+GGG | - | chr7.3:10393706-10393725 | None:intergenic | 40.0% | |
GTCCAACGAGGTTAAACTAT+CGG | - | chr7.3:10395785-10395804 | None:intergenic | 40.0% | |
GTTACAAAGTCAGAGACATG+AGG | - | chr7.3:10392933-10392952 | None:intergenic | 40.0% | |
TACATTGTACCCCTCATGAA+AGG | + | chr7.3:10393177-10393196 | MS.gene007299:intron | 40.0% | |
TAGTCTCCAGTTACCTTCTT+CGG | - | chr7.3:10395137-10395156 | None:intergenic | 40.0% | |
TATATGACAGGCATGTTTGG+GGG | + | chr7.3:10393539-10393558 | MS.gene007299:intron | 40.0% | |
TCCCTGTATGTGAAGTTTGA+TGG | + | chr7.3:10393594-10393613 | MS.gene007299:CDS | 40.0% | |
TGAGGATTCTAGTGAAGATG+AGG | + | chr7.3:10394256-10394275 | MS.gene007299:CDS | 40.0% | |
TTATGTAGGGAAACCTGTGT+TGG | + | chr7.3:10394142-10394161 | MS.gene007299:intron | 40.0% | |
TTGGACCTATAAAAGGTCAC+TGG | + | chr7.3:10392865-10392884 | MS.gene007299:intron | 40.0% | |
TTGTCAAATAGCGGCTATAC+TGG | - | chr7.3:10392587-10392606 | None:intergenic | 40.0% | |
! | TAGTGTCGAATAAGGCTTAG+GGG | - | chr7.3:10395370-10395389 | None:intergenic | 40.0% |
! | TCCAACCAGTGACCTTTTAT+AGG | - | chr7.3:10392873-10392892 | None:intergenic | 40.0% |
! | TGATGCATTTACAACGGGTT+TGG | - | chr7.3:10394180-10394199 | None:intergenic | 40.0% |
!! | AGGGCACTGGTAATACTAAT+TGG | + | chr7.3:10394452-10394471 | MS.gene007299:intron | 40.0% |
!! | ATCGCAGAATTGGCTTGTAA+AGG | + | chr7.3:10392892-10392911 | MS.gene007299:intron | 40.0% |
!! | CACTATCCTTTTAGGTGTTG+AGG | + | chr7.3:10393366-10393385 | MS.gene007299:intron | 40.0% |
!! | CATTTTGTGCTTTAGGTCAC+TGG | + | chr7.3:10392409-10392428 | MS.gene007299:intron | 40.0% |
!! | GGCCTTATTATGAGAACCTA+AGG | - | chr7.3:10396127-10396146 | None:intergenic | 40.0% |
!! | GGGCACTGGTAATACTAATT+GGG | + | chr7.3:10394453-10394472 | MS.gene007299:intron | 40.0% |
!! | GTAATGTGTCGTTTAGCTCA+TGG | + | chr7.3:10395049-10395068 | MS.gene007299:intron | 40.0% |
!! | GTATCGGCACAACATCTTTT+TGG | - | chr7.3:10394355-10394374 | None:intergenic | 40.0% |
!! | TGGATAAGCTCGCTATTTTC+TGG | - | chr7.3:10393421-10393440 | None:intergenic | 40.0% |
AAACCTGTGTTGGAGGTGAA+TGG | + | chr7.3:10394152-10394171 | MS.gene007299:CDS | 45.0% | |
AACACCTGTACCTGTGAAGA+AGG | + | chr7.3:10395252-10395271 | MS.gene007299:CDS | 45.0% | |
ACTTCACATACAGGGATACC+GGG | - | chr7.3:10393590-10393609 | None:intergenic | 45.0% | |
AGTGGTGAGAGAACATTGTG+GGG | - | chr7.3:10395552-10395571 | None:intergenic | 45.0% | |
CAACTCCAATCACCTGTTAC+AGG | - | chr7.3:10396007-10396026 | None:intergenic | 45.0% | |
CAGATTTACCAGCCTGCTTA+GGG | - | chr7.3:10395918-10395937 | None:intergenic | 45.0% | |
CGCTCCCATATTTCCAGTTA+TGG | - | chr7.3:10393707-10393726 | None:intergenic | 45.0% | |
CTCACCACTTTGCCTATTCA+TGG | + | chr7.3:10395563-10395582 | MS.gene007299:intron | 45.0% | |
GACCGATAGTTTAACCTCGT+TGG | + | chr7.3:10395780-10395799 | MS.gene007299:intron | 45.0% | |
GATGGTCAGAAGCTTCAACT+TGG | + | chr7.3:10393612-10393631 | MS.gene007299:CDS | 45.0% | |
GCAATAGCTGCTCCATGAAT+AGG | - | chr7.3:10395578-10395597 | None:intergenic | 45.0% | |
GGTACTAATGCTGCTCATCT+TGG | + | chr7.3:10395401-10395420 | MS.gene007299:intron | 45.0% | |
GTGTGTATAGAACGATGAGG+AGG | - | chr7.3:10396051-10396070 | None:intergenic | 45.0% | |
TAATAAGCAGCCAGAGAAGC+AGG | + | chr7.3:10395945-10395964 | MS.gene007299:CDS | 45.0% | |
TCATGACCGACCATGAAAAC+AGG | - | chr7.3:10394840-10394859 | None:intergenic | 45.0% | |
TCTGTAACACTACAGCCTAG+CGG | - | chr7.3:10392563-10392582 | None:intergenic | 45.0% | |
TGATACTCCTTACCCTAAGC+AGG | + | chr7.3:10395903-10395922 | MS.gene007299:CDS | 45.0% | |
TGCTCCATGAATAGGCAAAG+TGG | - | chr7.3:10395570-10395589 | None:intergenic | 45.0% | |
TGTATAGAACGATGAGGAGG+AGG | - | chr7.3:10396048-10396067 | None:intergenic | 45.0% | |
TTTGCCTTCTTCACAGGTAC+AGG | - | chr7.3:10395259-10395278 | None:intergenic | 45.0% | |
TTTGTCACTCCAGAGAAGAC+TGG | + | chr7.3:10395280-10395299 | MS.gene007299:CDS | 45.0% | |
! | ACTTTCGGGGATCGTTGTTT+TGG | + | chr7.3:10392846-10392865 | MS.gene007299:intron | 45.0% |
! | GGCACTATCATAGCGGAATT+TGG | - | chr7.3:10392656-10392675 | None:intergenic | 45.0% |
! | TGTTCTGTGGAGTTTTCGTG+AGG | - | chr7.3:10392391-10392410 | None:intergenic | 45.0% |
!! | TAGGGTAAGGAGTATCAACG+TGG | - | chr7.3:10395900-10395919 | None:intergenic | 45.0% |
!!! | TATGGGAGCGTCTTCTTTTC+TGG | + | chr7.3:10393717-10393736 | MS.gene007299:CDS | 45.0% |
AGACTGAAGGGAGCAACAAG+AGG | + | chr7.3:10395209-10395228 | MS.gene007299:intron | 50.0% | |
AGGGGGCTATTGTGTCTTAG+TGG | + | chr7.3:10394933-10394952 | MS.gene007299:intron | 50.0% | |
ATTGCCACCCGAATCATCAC+AGG | - | chr7.3:10394594-10394613 | None:intergenic | 50.0% | |
CAAGCCCTGTAACAGGTGAT+TGG | + | chr7.3:10395999-10396018 | MS.gene007299:intron | 50.0% | |
CAAGGATAAAGGGAGTGACC+CGG | + | chr7.3:10393569-10393588 | MS.gene007299:CDS | 50.0% | |
CACAGGTACAGGTGTTTCCT+TGG | - | chr7.3:10395248-10395267 | None:intergenic | 50.0% | |
CAGGAGACTCCAAAGTCTAG+TGG | + | chr7.3:10395964-10395983 | MS.gene007299:CDS | 50.0% | |
CTACAGCGGCACTATCATAG+CGG | - | chr7.3:10392663-10392682 | None:intergenic | 50.0% | |
GACTGAAGGGAGCAACAAGA+GGG | + | chr7.3:10395210-10395229 | MS.gene007299:intron | 50.0% | |
GAGACACCGAAGAAGGTAAC+TGG | + | chr7.3:10395128-10395147 | MS.gene007299:intron | 50.0% | |
GAGGGTTGCTGAATCTTCCA+AGG | + | chr7.3:10395228-10395247 | MS.gene007299:CDS | 50.0% | |
GCAGATTTACCAGCCTGCTT+AGG | - | chr7.3:10395919-10395938 | None:intergenic | 50.0% | |
GGGAGGTCAGCAAGGATAAA+GGG | + | chr7.3:10393559-10393578 | MS.gene007299:CDS | 50.0% | |
TGATGAGGAGACACCGAAGA+AGG | + | chr7.3:10395121-10395140 | MS.gene007299:CDS | 50.0% | |
TGTAGGGAAACCTGTGTTGG+AGG | + | chr7.3:10394145-10394164 | MS.gene007299:intron | 50.0% | |
TTACCAGCCTGCTTAGGGTA+AGG | - | chr7.3:10395913-10395932 | None:intergenic | 50.0% | |
! | CACTGGTTGGATCGCAGAAT+TGG | + | chr7.3:10392882-10392901 | MS.gene007299:intron | 50.0% |
! | CATTCCTGTGATGATTCGGG+TGG | + | chr7.3:10394587-10394606 | MS.gene007299:intron | 50.0% |
! | GTCGTTTAGCTCATGGCGAA+TGG | + | chr7.3:10395056-10395075 | MS.gene007299:intron | 50.0% |
! | TTTGGAGTCTCCTGCTTCTC+TGG | - | chr7.3:10395958-10395977 | None:intergenic | 50.0% |
ACAGCTGCAAGCCCTGTAAC+AGG | + | chr7.3:10395992-10396011 | MS.gene007299:CDS | 55.0% | |
ACTCCTTACCCTAAGCAGGC+TGG | + | chr7.3:10395907-10395926 | MS.gene007299:CDS | 55.0% | |
ATGACAGGCATGTTTGGGGG+AGG | + | chr7.3:10393542-10393561 | MS.gene007299:intron | 55.0% | |
ATGTTTGGGGGAGGTCAGCA+AGG | + | chr7.3:10393551-10393570 | MS.gene007299:CDS | 55.0% | |
GCACCATTCACCTCCAACAC+AGG | - | chr7.3:10394158-10394177 | None:intergenic | 55.0% | |
GGGGAGGTCAGCAAGGATAA+AGG | + | chr7.3:10393558-10393577 | MS.gene007299:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 10392081 | 10396164 | 10392081 | ID=MS.gene007299 |
chr7.3 | mRNA | 10392081 | 10396164 | 10392081 | ID=MS.gene007299.t1;Parent=MS.gene007299 |
chr7.3 | exon | 10392081 | 10392093 | 10392081 | ID=MS.gene007299.t1.exon1;Parent=MS.gene007299.t1 |
chr7.3 | CDS | 10392081 | 10392093 | 10392081 | ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1 |
chr7.3 | exon | 10393380 | 10393450 | 10393380 | ID=MS.gene007299.t1.exon2;Parent=MS.gene007299.t1 |
chr7.3 | CDS | 10393380 | 10393450 | 10393380 | ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1 |
chr7.3 | exon | 10393549 | 10393798 | 10393549 | ID=MS.gene007299.t1.exon3;Parent=MS.gene007299.t1 |
chr7.3 | CDS | 10393549 | 10393798 | 10393549 | ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1 |
chr7.3 | exon | 10394018 | 10394062 | 10394018 | ID=MS.gene007299.t1.exon4;Parent=MS.gene007299.t1 |
chr7.3 | CDS | 10394018 | 10394062 | 10394018 | ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1 |
chr7.3 | exon | 10394150 | 10394277 | 10394150 | ID=MS.gene007299.t1.exon5;Parent=MS.gene007299.t1 |
chr7.3 | CDS | 10394150 | 10394277 | 10394150 | ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1 |
chr7.3 | exon | 10395065 | 10395142 | 10395065 | ID=MS.gene007299.t1.exon6;Parent=MS.gene007299.t1 |
chr7.3 | CDS | 10395065 | 10395142 | 10395065 | ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1 |
chr7.3 | exon | 10395211 | 10395301 | 10395211 | ID=MS.gene007299.t1.exon7;Parent=MS.gene007299.t1 |
chr7.3 | CDS | 10395211 | 10395301 | 10395211 | ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1 |
chr7.3 | exon | 10395881 | 10396013 | 10395881 | ID=MS.gene007299.t1.exon8;Parent=MS.gene007299.t1 |
chr7.3 | CDS | 10395881 | 10396013 | 10395881 | ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1 |
chr7.3 | exon | 10396104 | 10396164 | 10396104 | ID=MS.gene007299.t1.exon9;Parent=MS.gene007299.t1 |
chr7.3 | CDS | 10396104 | 10396164 | 10396104 | ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1 |
Gene Sequence |
Protein sequence |