AlfalfaGEDB | MS.gene007299

M. sativa cultivar XinJiangDaYe / MS.gene007299

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF13912.9 PF17800.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007299.t1	RHN48623.1	99.7	289	1	0	1	289	1	289	1.60E-124	455.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007299.t1	Q6V9I6	51.0	290	117	8	1	288	1	267	6.0e-35	149.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007299.t1	A0A396H772	99.7	289	1	0	1	289	1	289	1.2e-124	455.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene007299.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007299.t1	MTR_2g084815	43.087	311	146	7	1	289	1	302	3.07e-52	173
MS.gene007299.t1	MTR_2g084815	40.193	311	132	7	1	289	1	279	1.36e-44	152
MS.gene007299.t1	MTR_2g084815	43.725	247	113	6	1	225	1	243	1.63e-33	123
MS.gene007299.t1	MTR_4g055440	39.200	250	133	6	1	247	5	238	5.60e-33	122
MS.gene007299.t1	MTR_2g084815	50.376	133	58	3	1	129	1	129	1.30e-30	115
MS.gene007299.t1	MTR_4g055450	44.211	95	39	2	2	94	6	88	5.84e-17	80.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007299.t1	AT5G03740	44.040	302	145	10	1	288	1	292	1.51e-47	160
MS.gene007299.t1	AT3G44750	55.319	94	41	1	1	94	1	93	1.69e-27	107
MS.gene007299.t1	AT3G44750	55.319	94	41	1	1	94	1	93	1.81e-27	107
MS.gene007299.t1	AT5G22650	36.054	294	152	9	1	269	1	283	7.45e-25	101
MS.gene007299.t1	AT5G22650	36.120	299	146	11	1	269	1	284	2.08e-23	97.8
MS.gene007299.t1	AT2G27840	42.708	96	51	3	1	94	1	94	4.71e-17	77.0
MS.gene007299.t1	AT2G27840	42.708	96	51	3	1	94	1	94	6.74e-17	77.8
MS.gene007299.t1	AT2G27840	42.708	96	51	3	1	94	1	94	2.34e-16	74.7

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Find 66 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGGTGAATCACTCA+AGG	0.619144	7.3:+10393390	MS.gene007299:CDS
AAACCTGTGTTGGAGGTGAA+TGG	0.584764	7.3:+10394152	MS.gene007299:CDS
AAAGGATATGAATCATGTTC+CGG	0.414891	7.3:-10393759	None:intergenic
AACACCTGTACCTGTGAAGA+AGG	0.532518	7.3:+10395252	MS.gene007299:CDS
AACTCCAATCACCTGTTACA+GGG	0.600270	7.3:-10396003	None:intergenic
AACTTCACATACAGGGATAC+CGG	0.463337	7.3:-10393588	None:intergenic
AAGCATATACCGATGAAATG+TGG	0.617686	7.3:-10393438	None:intergenic
AAGCGATGAAGATTCTGATG+AGG	0.625838	7.3:+10395106	MS.gene007299:CDS
AATTTGAGCTATCCCATAAC+TGG	0.378730	7.3:+10393691	MS.gene007299:CDS
ACAGCTGCAAGCCCTGTAAC+AGG	0.439457	7.3:+10395992	MS.gene007299:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATTCCTGTGATGATT+CGG	+	chr7.3:10394583-10394602	MS.gene007299:intron	30.0%
AAAGGATATGAATCATGTTC+CGG	-	chr7.3:10393762-10393781	None:intergenic	30.0%
AACTGAATAACAAATGGTAG+GGG	-	chr7.3:10393067-10393086	None:intergenic	30.0%
AATACTAATTGGGTAGAAGA+AGG	+	chr7.3:10394463-10394482	MS.gene007299:intron	30.0%
AATGTAAAGTGATAGAAAGG+AGG	-	chr7.3:10392112-10392131	None:intergenic	30.0%
ACATTCCTACTTAAAAGTGA+AGG	+	chr7.3:10394679-10394698	MS.gene007299:intron	30.0%
ACTTACAAAATAGATGAAGC+TGG	+	chr7.3:10394615-10394634	MS.gene007299:intron	30.0%
ATATTAGAACGCATTGTTGT+TGG	-	chr7.3:10393827-10393846	None:intergenic	30.0%
CTACGGAAAAATACAAATGT+AGG	+	chr7.3:10394432-10394451	MS.gene007299:intron	30.0%
GATATAAAACTCCTTTCATG+AGG	-	chr7.3:10393191-10393210	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	10392081	10396164	10392081	ID=MS.gene007299
chr7.3	mRNA	10392081	10396164	10392081	ID=MS.gene007299.t1;Parent=MS.gene007299
chr7.3	exon	10392081	10392093	10392081	ID=MS.gene007299.t1.exon1;Parent=MS.gene007299.t1
chr7.3	CDS	10392081	10392093	10392081	ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1
chr7.3	exon	10393380	10393450	10393380	ID=MS.gene007299.t1.exon2;Parent=MS.gene007299.t1
chr7.3	CDS	10393380	10393450	10393380	ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1
chr7.3	exon	10393549	10393798	10393549	ID=MS.gene007299.t1.exon3;Parent=MS.gene007299.t1
chr7.3	CDS	10393549	10393798	10393549	ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1
chr7.3	exon	10394018	10394062	10394018	ID=MS.gene007299.t1.exon4;Parent=MS.gene007299.t1
chr7.3	CDS	10394018	10394062	10394018	ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1
chr7.3	exon	10394150	10394277	10394150	ID=MS.gene007299.t1.exon5;Parent=MS.gene007299.t1
chr7.3	CDS	10394150	10394277	10394150	ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1
chr7.3	exon	10395065	10395142	10395065	ID=MS.gene007299.t1.exon6;Parent=MS.gene007299.t1
chr7.3	CDS	10395065	10395142	10395065	ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1
chr7.3	exon	10395211	10395301	10395211	ID=MS.gene007299.t1.exon7;Parent=MS.gene007299.t1
chr7.3	CDS	10395211	10395301	10395211	ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1
chr7.3	exon	10395881	10396013	10395881	ID=MS.gene007299.t1.exon8;Parent=MS.gene007299.t1
chr7.3	CDS	10395881	10396013	10395881	ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1
chr7.3	exon	10396104	10396164	10396104	ID=MS.gene007299.t1.exon9;Parent=MS.gene007299.t1
chr7.3	CDS	10396104	10396164	10396104	ID=cds.MS.gene007299.t1;Parent=MS.gene007299.t1

Gene Sequence

>MS.gene007299

ATGGAGTTTTGGGGTAACACCGTTTCTTCCTCCTTTCTATCACTTTACATTTTTTCTTATTTTACTACAAAATATATTCGTATAGTACTTGATTTTCCTTTTTGAAAAAAACAAAATCATTGACGAAAACATTTTTTCAATTTCTATAGAATCGCTATACTTGATTTTTCACTTCGCATATTAAACGATCGTATTTTTTCATGTATAAATATCGTTAGGTTTTGCAGTTTTTGGATAAAAATGGTGGAAATGTGATGGTAATTATTGCTGTTTTAGTCATGTATTACTAAACCCTAATTATCATCATCCTCACGAAAACTCCACAGAACATTTTGTGCTTTAGGTCACTGGTAATTTTTTTCAAGTTATGAAGTTTCTATAATTACTTCATCACATTACCTAATTTTGTTTAAGCATGTATTAGTATAAACCTGTTTAAATCAATGTTGTGTAATTGCAGTTAGTGGATTGTTAAAATTCCGCTAGGCTGTAGTGTTACAGAGCCAGTATAGCCGCTATTTGACAATATTCTGTACTACTAAGTAGTGAATCGCAGAGTAATAGTGGTTAATCCAAATTCCGCTATGATAGTGCCGCTGTAGTTGCAATTTAACAACACTGTTTTGCAGTTAGTTGATAGAATCTGCGAAGCTGAAAATCAAAATGATCCATAAAACTGAGAATAGTTTATCGTATTAGTTATTTTTAGTTAATCAATTTAGTTCCTAGAATCATCTTGAAGGGACTAAATGAGAGTTTTATTACACTTTCGGGGATCGTTGTTTTGGACCTATAAAAGGTCACTGGTTGGATCGCAGAATTGGCTTGTAAAGGCTGCCTCTATTAGATCCTCATGTCTCTGACTTTGTAACAGATTTTTTTTCTGTACTTCATGCTGAGTCAGTTAATGAGTAATTTTAGAAATCAGAATGCTAGTTCTGTTAGTTCACAGTCAGTTAGTTCACTTACTCTAAATATCAAAACCCCTACCATTTGTTATTCAGTTTTTCATTTGGTCAATTTACAAAAAAAGAAATTCTGTTAATTGCTCTTTGTTTTCTCCTCTTCTGTCTTTTTCAACCTCTTTAGTTTCTATTACATTGTACCCCTCATGAAAGGAGTTTTATATCACTGGGTTGTTATTTTGTTAAATAATAACATGGTTTTTAAGATGGGTCTTTTGCAATATCAAATTATTTCAGCGGCAAAAGTAATATTGTGTTTCCTTCTTTGGATTTTTTTTATCTTGTTGCTAAATTAATATTGGATGTGTATATTCACAAATCACTATCCTTTTAGGTGTTGAGGTAAAACTTGGTGAATCACTCAAGGTTGTTCCAGAAAATAGCGAGCTTATCCACATTTCATCGGTATATGCTTATATCATGTCAAATAAACATTTAGTCATTCTATTTCCATTGAATCGTTAATGTTTTTGTATAAATGGTCTCAAATCTTTATATGACAGGCATGTTTGGGGGAGGTCAGCAAGGATAAAGGGAGTGACCCGGTATCCCTGTATGTGAAGTTTGATGGTCAGAAGCTTCAACTTGGAACACTTTCTTCAGAAAAATTTCCTCAGACATCTTTTGATTTGGTTTTTGGGAAGAAATTTGAGCTATCCCATAACTGGAAATATGGGAGCGTCTTCTTTTCTGGATTTAGAATCGAATGCGAACCGGAACATGATTCATATCCTTTTAATACTATTTTATATTGTCTTGAATTCTAATTTTTTCTTTACCAACAACAATGCGTTCTAATATCTTCTAACATTTTTGCACATCCTTAACTACATTCTTTTATCTTTTACTAGTGAAGATGAAGCTTCTGATGGTGAGATACTCTTCTTAATTTTGTTATTATTATTACTATTGTTGTTGTTATTATTATTATTATTATTTGCTTCTCAATTTATTCTATCATCTTTGTTTTAGATACTGATTCTGAAGAGGAAGATATTCCACTTAATGCTGCTAATGGTAAAATTATTTCATTATCCATTTTATGCATTTCTATTGTCATAAATAAGTTTCTCCTGTGTCATATTGTTCTAAACATTTATGTAGGGAAACCTGTGTTGGAGGTGAATGGTGCCAAACCCGTTGTAAATGCATCAAAACAGAAAAAGAATCAGAAGGATGCTAGTACTGACGACAGTTCAGATTCATCTGATGAGGATTCTAGTGAAGATGAGGTAACCGTATAATCTAGAAAGTGGATTTCAATATATAATGGATATTGGATAGCAGACTGTCTTAAATCTTATTGCCAAAAAGATGTTGTGCCGATACACAAAGTTGTTCGATGGTATCTAATATCCAGCTGCAGTTATTGAATTAAATGAAATGCTACGGAAAAATACAAATGTAGGGCACTGGTAATACTAATTGGGTAGAAGAAGGTAGGAATACTTGGTGTAAATGTTTGTTCCAAAAAATTTCTTTAGAAAACATATTTGTACCAAAAATTAATGGTTATATATGAGATCAACTTTGTGCTAAAACATTCCTGTGATGATTCGGGTGGCAATCACTTACAAAATAGATGAAGCTGGTCGGCGCAACTACTTATAACATAGATTAAGTGATCAAGTAAACATTCCTACTTAAAAGTGAAGGTGTTTTCACATACATTTTTACCAAATTGTTTTGACTTCCTTTATGTGAATGAGTTTTTAGATAACAGCTTGTGACTATAGAATGCAGCTATTATAGTTCAATTTTATTATTTGCTGTCCAAATTGTCCTCATAATCCTGTTTTCATGGTCGGTCATGATAATGATAAGAGTTATCAACTCTGTGGACCAATTAAATATTTTAAATATATTTGTTAATTTAATGATTGAATCAGGGGGCTATTGTGTCTTAGTGGTATTATTTAATATACGATGTAGACTTGGTTTTTCCGATTACTGAATTTTTTATTGAAGGAGATTTTAGTTAATTCATATTTTAGTTTGTTTTGGTAATGTGTCGTTTAGCTCATGGCGAATGGTCAAATTAAAAGTAGTAGTGAAGATGAAAGCGATGAAGATTCTGATGAGGAGACACCGAAGAAGGTAACTGGAGACTATATTGTGCTTCGATTTGTCTCCGAATTTGAATTTAATTTTGAGTTTTGTTTTAGACTGAAGGGAGCAACAAGAGGGTTGCTGAATCTTCCAAGGAAACACCTGTACCTGTGAAGAAGGCAAAATTTGTCACTCCAGAGAAGACTGGTTAGTTTTTTCCCCAGTACTTTGTTTGTTAGTTTTTTTTAGAAAAAATTGTCTATGATATTTCACCCCTAAGCCTTATTCGACACTAATGTTGTATACGGTACTAATGCTGCTCATCTTGGATACGCCAACATTGATAAAATAAGATATGAATAATGTCATCTAGATGTATAAGGTTTGACAGTGGTTCAATACAGCCCTTTGCACTGTTATTGCATAAAATTGCATTGTTGTGGTGCGTCTCTTTCCCCACAATGTTCTCTCACCACTTTGCCTATTCATGGAGCAGCTATTGCTTTATGGTTAAACTACTTTGTGACTTATGCTGGACTTGAATAGAGTTAAACTACTTGACCACGTGTTAAATATTTTCTGACTCATTGTTATATTTTTTAGTGACAATTTTGTCTTTTGGTTGAATCACAATAAAATGTAATAAAACATGAAAGACCGAAGTACAATTAGAAAACAAAATTGAGACCGATAGTTTAACCTCGTTGGACTCGTTAATTTGTCATGCATGCATGTTATTAACAAAGTAGAACTGAAAGGAAATGACGAGAATTATGATATTTTCAGGTGGCAGGAGTAGTGTCCACGTTGATACTCCTTACCCTAAGCAGGCTGGTAAATCTGCTGCAAATAATAAGCAGCCAGAGAAGCAGGAGACTCCAAAGTCTAGTGGAGATTACAGCTGCAAGCCCTGTAACAGGTGATTGGAGTTGTCTTTTTATATCTATTATCCTCCTCCTCATCGTTCTATACACACTTATTCTCTTGCACAATTTTATTTTGACTGCAGGTCTTTTAAGACTGAAGATGCCTTAGGTTCTCATAATAAGGCCAAGCACAGTGCCAAGTGA

Protein sequence

>MS.gene007299.t1

MEFWGVEVKLGESLKVVPENSELIHISSACLGEVSKDKGSDPVSLYVKFDGQKLQLGTLSSEKFPQTSFDLVFGKKFELSHNWKYGSVFFSGFRIECEPEHDSYPFNTILYYTDSEEEDIPLNAANGKPVLEVNGAKPVVNASKQKKNQKDASTDDSSDSSDEDSSEDELMANGQIKSSSEDESDEDSDEETPKKTEGSNKRVAESSKETPVPVKKAKFVTPEKTGGRSSVHVDTPYPKQAGKSAANNKQPEKQETPKSSGDYSCKPCNRSFKTEDALGSHNKAKHSAK