AlfalfaGEDB | MS.gene007427

M. sativa cultivar XinJiangDaYe / MS.gene007427

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24 PF06507.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007427.t1	XP_024630427.1	95.3	620	28	1	1	620	1	619	0.00E+00	1226.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007427.t1	Q9AV47	51.5	551	227	13	26	555	11	542	1.6e-149	531.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007427.t1	Q2HV56	95.1	612	29	1	1	612	1	611	0.0e+00	1210.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene007427.t1	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007427.t1	MTR_7g101280	95.098	612	29	1	1	612	1	611	0.0	1222
MS.gene007427.t1	MTR_0041s0110	95.098	612	29	1	1	612	1	611	0.0	1222
MS.gene007427.t1	MTR_1g064430	54.531	618	247	12	22	619	31	634	0.0	620
MS.gene007427.t1	MTR_1g064430	54.531	618	247	12	22	619	18	621	0.0	620
MS.gene007427.t1	MTR_0041s0120	82.102	352	29	1	40	391	1	318	0.0	606
MS.gene007427.t1	MTR_0041s0120	81.818	110	18	2	489	598	310	417	6.01e-51	182
MS.gene007427.t1	MTR_7g101275	76.705	352	36	1	40	391	1	306	0.0	557
MS.gene007427.t1	MTR_7g101275	81.818	110	18	2	489	598	298	405	3.79e-51	182
MS.gene007427.t1	MTR_2g094570	52.321	560	230	12	11	555	44	581	0.0	546
MS.gene007427.t1	MTR_2g094570	52.834	547	224	11	21	555	1	525	0.0	543

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007427.t1	AT4G30080	54.737	475	182	12	26	487	14	468	4.98e-167	492
MS.gene007427.t1	AT2G28350	46.777	605	263	16	26	600	5	580	3.44e-163	482
MS.gene007427.t1	AT2G28350	46.777	605	263	16	26	600	5	580	4.43e-163	483
MS.gene007427.t1	AT1G77850	38.043	552	304	10	25	563	13	539	1.13e-113	352
MS.gene007427.t1	AT1G77850	38.043	552	304	10	25	563	13	539	1.53e-113	352
MS.gene007427.t1	AT1G19850	35.784	408	193	11	15	406	34	388	1.23e-68	240
MS.gene007427.t1	AT1G19850	35.784	408	193	11	15	406	23	377	1.45e-68	239
MS.gene007427.t1	AT1G30330	35.520	442	221	12	1	434	1	386	2.20e-68	239
MS.gene007427.t1	AT1G30330	35.520	442	221	12	1	434	1	386	2.20e-68	239
MS.gene007427.t1	AT1G59750	34.489	519	270	16	31	536	22	483	1.67e-67	233

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Find 151 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGTGAGTTAACTTC+TGG	0.421701	7.3:-11775089	None:intergenic
AAACTTCGAAGAAACGGTAA+AGG	0.575815	7.3:+11775776	MS.gene007427:CDS
AAAGGCGAAAGAGGGATCGA+AGG	0.643435	7.3:-11776800	None:intergenic
AACGATGGAAATCCTCCGTA+AGG	0.577357	7.3:-11775734	None:intergenic
AACTAGTCCTGCCGGCATGC+AGG	0.419630	7.3:+11776949	MS.gene007427:CDS
AACTCAGGAGTACCTGACCG+AGG	0.728041	7.3:-11775914	None:intergenic
AAGACCGAAATGACCATGCC+TGG	0.532259	7.3:-11776975	None:intergenic
AAGAGGCATTTGTTGACAAC+TGG	0.392584	7.3:+11775533	MS.gene007427:CDS
AAGATTATGAAAATCTGGTA+AGG	0.555027	7.3:-11776999	None:intergenic
AAGTGATGGAATGATGGGTA+GGG	0.472687	7.3:+11775814	MS.gene007427:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATGTGAGTTAACTTC+TGG	-	chr7.3:11775092-11775111	None:intergenic	30.0%
AATAGGAAGCTTCCAATTTA+TGG	-	chr7.3:11776391-11776410	None:intergenic	30.0%
ACATTAGAGATGAAACATTC+AGG	+	chr7.3:11777379-11777398	MS.gene007427:CDS	30.0%
CTACATCACTATCATACATT+AGG	+	chr7.3:11776437-11776456	MS.gene007427:intron	30.0%
GGATAATAAACCACATCAAA+CGG	-	chr7.3:11775896-11775915	None:intergenic	30.0%
TAGATACAATGGAACATTGT+TGG	+	chr7.3:11776541-11776560	MS.gene007427:intron	30.0%
TGACATCAGAAAATCATTCA+CGG	-	chr7.3:11776692-11776711	None:intergenic	30.0%
TTAGGATTTAGAAGGTTGTT+TGG	-	chr7.3:11776905-11776924	None:intergenic	30.0%
TTGATGTGGTTTATTATCCT+CGG	+	chr7.3:11775897-11775916	MS.gene007427:CDS	30.0%
TTGCAAGAATACACATTCTA+TGG	-	chr7.3:11776323-11776342	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	11774960	11777511	11774960	ID=MS.gene007427
chr7.3	mRNA	11774960	11777511	11774960	ID=MS.gene007427.t1;Parent=MS.gene007427
chr7.3	exon	11774960	11776114	11774960	ID=MS.gene007427.t1.exon1;Parent=MS.gene007427.t1
chr7.3	CDS	11774960	11776114	11774960	ID=cds.MS.gene007427.t1;Parent=MS.gene007427.t1
chr7.3	exon	11776722	11777400	11776722	ID=MS.gene007427.t1.exon2;Parent=MS.gene007427.t1
chr7.3	CDS	11776722	11777400	11776722	ID=cds.MS.gene007427.t1;Parent=MS.gene007427.t1
chr7.3	exon	11777483	11777511	11777483	ID=MS.gene007427.t1.exon3;Parent=MS.gene007427.t1
chr7.3	CDS	11777483	11777511	11777483	ID=cds.MS.gene007427.t1;Parent=MS.gene007427.t1

Gene Sequence

>MS.gene007427

ATGAAAGAAAAAAGAAAAGGTTGCAATCCAACTGAGATGAATATGGAGTCAAACAAGAAATTGAAAAATGTGAACAAGAGTGTGGACCCTCAGCTATGGCATGCCGTTGCAGGAGGAATGGTGCAAATGCCAGAAGTTAACTCACATGTTTTCTACTTCCCTCAGGGTCACGCCGAGCATGCATGTGAACCGGTGAATTTCAGTGCTTACTCCAAAATTCCGTCTTTCATTCCATGTAGAGTTGAAGCAATAAGATATATGGCTAATCATGAGACCGATGAAGTGTATGCAAAACTCAGGCTTGTTCCTATGAATATTAACCAAGTTAGTTTTGATAATGATGGTGTTGCTGGCATCAACGTGTCTGAAATTAAGGATAAACATCAATCTTTTGCGAAAACCTTGACACAATCTGATGCAAACAATGGTGGTGGCTTTTCTTGTCCTAGATATTGTGCAGAAACGCTTTTTCCTCGTTTGGACTATTCAGCTAACCCTCCTCTTCAGGATATTTTTCCCAAGGATGTTCATGGCGAAAAGTGGCATTTCAGGCACGTTTATAGGGGAACGCCGAAGAGGCATTTGTTGACAACTGGATGGAGTCCTTTTGTCAGCGACAAGAAACTTGCGTCTGGGGATTCGATTGTGTTTTTGAGATCTGAAAACGGCGATCTTCATGTTGGAATTCGGAGGGCTAAAAGGCGAAATAATGTTGGAGTCGATCCTTTGTTAGGGTGGAAATCTGGTAGTGGAATTGGAATTTGTCCTGCACCACCTTACGGAGGATTTCCATCGTTTTCGGGAGAGGAAGATAATAAACTTCGAAGAAACGGTAAAGGTAATGGATTGCTAATAAGTGATGGAATGATGGGTAGGGGGAAGGTGAAAGCTCTAGAAGTTATTGAAGCAATAAAACTCGGTACTAATATGCAGCCGTTTGATGTGGTTTATTATCCTCGGTCAGGTACTCCTGAGTTTCTTGTGAAAACTTCTTTAATTGGAACAGCACTTCAGATTAGGTGGTGTCCTGGAATGAGGTTCAAGATGGCCATTGAAACTGAGGACTCATCAAGGATAAGTTGGTTTATCGGAACTATTGCTTCTGTTCAGGCTGCTGATCCGTCATGGTCTGATTCTATGTGGAGACTTCTCGAGGTATATACATGTTTATTATACACTCCCTCTAGAATTAATTTACTTGAGAATTTGTTTTATTGATGAATGTTTTGAGAATAATAACGGTAAATACAGTAAAGTTAGTTAGATTTTACTTATATTTTGGTCAACGTTGTCATATAGCAGCTATAGTGGCACTATATTGCTATGCCTTGTGGAATTTATACAAATCACTATTGTTCTACCATAGAATGTGTATTCTTGCAACATTTTCTTTTTCCAAAGCATAATCCTTTTAAGTTTTCATCAGTACCATAAATTGGAAGCTTCCTATTATTAGAATTTGCTAAAAATCCTATACCTACATCACTATCATACATTAGGTATCCCCGAGGGCCTTCACATATTTTACTTTGAATACATTCAAAATTTGCAAGTTAATGTATATATTTGTGTATGGTAATATAGATACAATGGAACATTGTTGGTACCTAATGAAATTGTAAGAAGAGAATTAGATTAGAATTTCATACTAATGAAATTCACAGTGTCCTTTTTATTGCATATATTACTATGTCATTTTGAATTACATTAATTTTGACCTTTGTTTCAGCCGTGAATGATTTTCTGATGTCATACTTTTTAGGTTACATGGGATGAACCTGAGATACTTAAAAATGTGAAAAGAGTGAATCCGTGGCAAGTTGAAATAGTATCGAACATGCCTTCGATCCCTCTTTCGCCTTTCATACCGCCAAGGAAGAAATTGAGATTACCTCAACTCCCAGATTTCCCAATTGATGGCCAATTTCCAATGCCAACTTTTCCAAACAACCTTCTAAATCCTAATATTCCAATTTTTTATTTACCCGAAACTAGTCCTGCCGGCATGCAGGGAGCCAGGCATGGTCATTTCGGTCTTACCTTACCAGATTTTCATAATCTTCCATTAGGTCTCTTTCAGCCTAGTTTCCAACAACCGTTTAATAATAATATTGCGACGATGCCGATGACTGTCCCAAATAACTTGGCATTGCAAAAGCCGAACACCAGTGAGAACATTTCATGCTCGCATTCGATATCAACTTCTGCACAATCTTCAGAGAAACCGGATCATGCAAAGCCGCACCAACTTGTGCTTTTTGGCCAAACAATACAAGTCGACACTGGAAATGAGAATTCCGAGAAGAAAATGACTAATCATTTGTCTGATTTTCATCTACAAAGCCTGCCGACACGTACATCTGATGAGAGGTTCGAGTGGAATGCTAAGAACCAATGCGAAGAAACATTCGCAGGAGAAACATTAGAGATGAAACATTCAGGTAAGAATGAATAAAATTCAGTATCTTTCTACTAGAAATTGATTTATGATATATGATAATAACTTATTTGTCTCTCTTTCAGAGACTTCATCAGAAAAGCTAGGAGGTTGA

Protein sequence

>MS.gene007427.t1

MKEKRKGCNPTEMNMESNKKLKNVNKSVDPQLWHAVAGGMVQMPEVNSHVFYFPQGHAEHACEPVNFSAYSKIPSFIPCRVEAIRYMANHETDEVYAKLRLVPMNINQVSFDNDGVAGINVSEIKDKHQSFAKTLTQSDANNGGGFSCPRYCAETLFPRLDYSANPPLQDIFPKDVHGEKWHFRHVYRGTPKRHLLTTGWSPFVSDKKLASGDSIVFLRSENGDLHVGIRRAKRRNNVGVDPLLGWKSGSGIGICPAPPYGGFPSFSGEEDNKLRRNGKGNGLLISDGMMGRGKVKALEVIEAIKLGTNMQPFDVVYYPRSGTPEFLVKTSLIGTALQIRWCPGMRFKMAIETEDSSRISWFIGTIASVQAADPSWSDSMWRLLEVTWDEPEILKNVKRVNPWQVEIVSNMPSIPLSPFIPPRKKLRLPQLPDFPIDGQFPMPTFPNNLLNPNIPIFYLPETSPAGMQGARHGHFGLTLPDFHNLPLGLFQPSFQQPFNNNIATMPMTVPNNLALQKPNTSENISCSHSISTSAQSSEKPDHAKPHQLVLFGQTIQVDTGNENSEKKMTNHLSDFHLQSLPTRTSDERFEWNAKNQCEETFAGETLEMKHSETSSEKLGG