AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007427

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007427.t1 MTR_7g101280 95.098 612 29 1 1 612 1 611 0.0 1222
MS.gene007427.t1 MTR_0041s0110 95.098 612 29 1 1 612 1 611 0.0 1222
MS.gene007427.t1 MTR_1g064430 54.531 618 247 12 22 619 31 634 0.0 620
MS.gene007427.t1 MTR_1g064430 54.531 618 247 12 22 619 18 621 0.0 620
MS.gene007427.t1 MTR_0041s0120 82.102 352 29 1 40 391 1 318 0.0 606
MS.gene007427.t1 MTR_0041s0120 81.818 110 18 2 489 598 310 417 6.01e-51 182
MS.gene007427.t1 MTR_7g101275 76.705 352 36 1 40 391 1 306 0.0 557
MS.gene007427.t1 MTR_7g101275 81.818 110 18 2 489 598 298 405 3.79e-51 182
MS.gene007427.t1 MTR_2g094570 52.321 560 230 12 11 555 44 581 0.0 546
MS.gene007427.t1 MTR_2g094570 52.834 547 224 11 21 555 1 525 0.0 543
MS.gene007427.t1 MTR_2g094570 52.834 547 224 11 21 555 1 525 0.0 541
MS.gene007427.t1 MTR_4g058930 54.461 538 226 10 28 555 9 537 0.0 538
MS.gene007427.t1 MTR_4g058930 54.461 538 226 10 28 555 9 537 0.0 537
MS.gene007427.t1 MTR_1g094960 49.313 582 232 17 22 566 10 565 1.94e-168 494
MS.gene007427.t1 MTR_3g073420 41.825 526 252 18 27 537 15 501 4.53e-115 356
MS.gene007427.t1 MTR_5g061220 39.612 515 227 17 26 513 14 471 1.30e-98 311
MS.gene007427.t1 MTR_5g040880 33.159 573 256 18 26 556 6 493 7.55e-83 270
MS.gene007427.t1 MTR_2g024430 38.406 414 176 12 28 430 17 362 3.00e-79 260
MS.gene007427.t1 MTR_5g082140 35.991 439 205 10 26 452 7 381 4.71e-77 253
MS.gene007427.t1 MTR_1g024025 33.693 463 229 12 24 462 36 444 4.36e-70 247
MS.gene007427.t1 MTR_4g088210 38.422 393 179 11 27 406 34 376 3.52e-69 238
MS.gene007427.t1 MTR_4g088210 38.422 393 179 11 27 406 34 376 4.78e-69 238
MS.gene007427.t1 MTR_1g058210 32.877 438 226 9 26 455 7 384 2.88e-68 229
MS.gene007427.t1 MTR_4g124900 33.962 424 211 9 26 438 18 383 1.25e-67 239
MS.gene007427.t1 MTR_4g124900 33.962 424 211 9 26 438 18 383 1.29e-67 239
MS.gene007427.t1 MTR_2g005240 36.000 425 213 10 23 440 15 387 1.83e-67 233
MS.gene007427.t1 MTR_2g018690 35.646 418 209 11 26 434 18 384 3.06e-66 233
MS.gene007427.t1 MTR_2g093740 35.437 412 202 10 31 427 56 418 3.44e-65 227
MS.gene007427.t1 MTR_8g100050 36.232 414 202 12 31 435 59 419 6.34e-65 227
MS.gene007427.t1 MTR_7g062540 35.507 414 203 12 31 434 14 373 8.36e-65 226
MS.gene007427.t1 MTR_2g093740 35.437 412 202 10 31 427 56 418 1.41e-64 226
MS.gene007427.t1 MTR_2g093740 35.437 412 202 10 31 427 56 418 1.97e-64 227
MS.gene007427.t1 MTR_5g076270 35.589 399 198 10 26 415 19 367 2.98e-64 227
MS.gene007427.t1 MTR_8g100050 36.232 414 202 12 31 435 59 419 3.59e-64 226
MS.gene007427.t1 MTR_3g064050 35.750 400 196 11 26 415 21 369 1.00e-63 225
MS.gene007427.t1 MTR_2g006270 34.709 412 196 15 28 430 10 357 1.49e-63 217
MS.gene007427.t1 MTR_8g079492 35.407 418 209 12 26 434 18 383 2.53e-63 225
MS.gene007427.t1 MTR_8g079492 35.407 418 209 12 26 434 18 383 2.81e-63 225
MS.gene007427.t1 MTR_2g093740 34.824 425 200 11 31 427 56 431 1.62e-61 217
MS.gene007427.t1 MTR_5g040740 34.913 401 173 12 28 414 9 335 2.83e-61 209
MS.gene007427.t1 MTR_4g060460 33.937 442 225 10 31 454 54 446 3.04e-61 218
MS.gene007427.t1 MTR_2g093740 34.353 425 202 11 31 427 56 431 6.44e-61 216
MS.gene007427.t1 MTR_2g093740 34.353 425 202 11 31 427 56 431 7.74e-61 217
MS.gene007427.t1 MTR_2g043250 36.573 391 189 9 26 408 18 357 1.08e-60 219
MS.gene007427.t1 MTR_4g060460 35.280 411 199 10 31 425 54 413 1.14e-60 216
MS.gene007427.t1 MTR_8g027440 35.280 411 204 10 25 427 23 379 8.39e-60 212
MS.gene007427.t1 MTR_8g101360 47.222 216 102 3 28 235 28 239 8.45e-57 207
MS.gene007427.t1 MTR_8g101360 38.000 100 59 3 312 409 270 368 2.11e-11 67.8
MS.gene007427.t1 MTR_4g021580 34.217 415 210 11 29 433 17 378 9.17e-57 202
MS.gene007427.t1 MTR_4g021580 34.217 415 210 11 29 433 17 378 1.82e-56 202
MS.gene007427.t1 MTR_2g014770 46.262 214 104 3 27 232 49 259 1.32e-51 188
MS.gene007427.t1 MTR_2g014770 35.455 110 66 3 298 406 282 387 2.90e-14 76.3
MS.gene007427.t1 MTR_2g014770 46.262 214 104 3 27 232 49 259 3.37e-51 188
MS.gene007427.t1 MTR_2g014770 35.455 110 66 3 298 406 282 387 2.35e-14 77.0
MS.gene007427.t1 MTR_8g079492 35.328 351 171 10 88 434 3 301 1.01e-49 185
MS.gene007427.t1 MTR_5g061890 31.671 401 191 13 28 413 9 341 3.15e-49 176
MS.gene007427.t1 MTR_5g060780 31.139 395 190 12 28 407 9 336 1.93e-48 174
MS.gene007427.t1 MTR_2g006380 32.203 413 198 17 28 430 17 357 2.23e-48 176
MS.gene007427.t1 MTR_5g460920 31.139 395 190 12 28 407 9 336 7.29e-48 173
MS.gene007427.t1 MTR_2g093740 37.124 299 138 6 131 427 38 288 7.01e-47 175
MS.gene007427.t1 MTR_2g093740 37.124 299 138 6 131 427 38 288 8.80e-47 175
MS.gene007427.t1 MTR_2g093740 35.577 312 138 7 131 427 38 301 1.91e-43 165
MS.gene007427.t1 MTR_2g093740 35.577 312 138 7 131 427 38 301 2.16e-43 166
MS.gene007427.t1 MTR_5g060630 28.107 523 248 18 26 476 7 473 9.78e-43 161
MS.gene007427.t1 MTR_5g460740 28.107 523 248 18 26 476 7 473 9.78e-43 161
MS.gene007427.t1 MTR_8g446900 30.412 388 196 14 73 454 8 327 3.24e-39 148
MS.gene007427.t1 MTR_5g062970 35.644 202 112 3 27 219 34 226 3.05e-37 139
MS.gene007427.t1 MTR_5g062960 33.889 180 92 6 301 476 1 157 3.30e-22 95.1
MS.gene007427.t1 MTR_5g060770 28.947 190 110 8 76 254 6 181 2.33e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007427.t1 AT4G30080 54.737 475 182 12 26 487 14 468 4.98e-167 492
MS.gene007427.t1 AT2G28350 46.777 605 263 16 26 600 5 580 3.44e-163 482
MS.gene007427.t1 AT2G28350 46.777 605 263 16 26 600 5 580 4.43e-163 483
MS.gene007427.t1 AT1G77850 38.043 552 304 10 25 563 13 539 1.13e-113 352
MS.gene007427.t1 AT1G77850 38.043 552 304 10 25 563 13 539 1.53e-113 352
MS.gene007427.t1 AT1G19850 35.784 408 193 11 15 406 34 388 1.23e-68 240
MS.gene007427.t1 AT1G19850 35.784 408 193 11 15 406 23 377 1.45e-68 239
MS.gene007427.t1 AT1G30330 35.520 442 221 12 1 434 1 386 2.20e-68 239
MS.gene007427.t1 AT1G30330 35.520 442 221 12 1 434 1 386 2.20e-68 239
MS.gene007427.t1 AT1G59750 34.489 519 270 16 31 536 22 483 1.67e-67 233
MS.gene007427.t1 AT1G30330 36.211 417 208 11 26 434 18 384 1.75e-67 237
MS.gene007427.t1 AT1G59750 34.357 521 273 17 31 536 22 488 1.83e-67 233
MS.gene007427.t1 AT1G59750 34.357 521 273 17 31 536 22 488 1.83e-67 233
MS.gene007427.t1 AT1G59750 34.674 522 267 18 31 536 22 485 4.21e-67 231
MS.gene007427.t1 AT5G62000 35.160 438 217 11 2 425 26 410 9.38e-66 231
MS.gene007427.t1 AT5G62000 35.160 438 217 11 2 425 26 410 9.38e-66 231
MS.gene007427.t1 AT5G62000 35.160 438 217 11 2 425 26 410 9.38e-66 231
MS.gene007427.t1 AT5G62000 35.160 438 217 11 2 425 26 410 9.38e-66 231
MS.gene007427.t1 AT5G62000 35.160 438 217 11 2 425 26 410 1.12e-65 231
MS.gene007427.t1 AT5G60450 34.532 417 210 10 22 424 32 399 1.55e-65 229
MS.gene007427.t1 AT5G37020 35.500 400 197 11 26 415 17 365 2.10e-65 229
MS.gene007427.t1 AT5G37020 35.500 400 197 11 26 415 17 365 2.88e-65 229
MS.gene007427.t1 AT5G60450 34.804 408 203 10 31 424 65 423 6.52e-65 228
MS.gene007427.t1 AT2G33860 32.974 464 239 14 31 475 54 464 4.98e-64 222
MS.gene007427.t1 AT3G61830 33.875 431 214 12 31 451 25 394 8.83e-61 213
MS.gene007427.t1 AT2G46530 34.456 386 187 10 31 406 21 350 6.77e-60 211
MS.gene007427.t1 AT2G46530 34.456 386 187 10 31 406 42 371 1.17e-59 210
MS.gene007427.t1 AT1G34310 34.815 405 203 9 28 427 24 372 2.94e-58 206
MS.gene007427.t1 AT1G35520 34.230 409 206 9 31 434 27 377 9.24e-58 204
MS.gene007427.t1 AT1G35240 33.902 410 206 10 31 434 27 377 2.40e-57 203
MS.gene007427.t1 AT1G34410 34.063 411 204 10 31 434 27 377 6.86e-56 200
MS.gene007427.t1 AT1G35540 33.835 399 204 9 31 424 27 370 7.54e-55 197
MS.gene007427.t1 AT1G19220 45.622 217 107 3 26 235 18 230 2.81e-54 200
MS.gene007427.t1 AT1G19220 36.220 127 78 3 312 437 261 385 6.72e-14 75.9
MS.gene007427.t1 AT5G20730 43.318 217 112 3 26 235 19 231 9.21e-53 196
MS.gene007427.t1 AT5G20730 34.375 128 80 4 312 437 262 387 5.26e-12 69.7
MS.gene007427.t1 AT5G20730 43.318 217 112 3 26 235 19 231 1.07e-52 196
MS.gene007427.t1 AT5G20730 34.375 128 80 4 312 437 262 387 4.30e-12 70.1
MS.gene007427.t1 AT5G20730 43.318 217 112 3 26 235 19 231 1.16e-52 196
MS.gene007427.t1 AT5G20730 33.858 127 81 3 312 437 262 386 6.12e-13 72.8
MS.gene007427.t1 AT4G23980 30.676 414 226 10 31 436 12 372 7.53e-51 186
MS.gene007427.t1 AT4G23980 31.343 402 215 10 31 424 12 360 8.55e-51 186
MS.gene007427.t1 AT1G34170 32.187 407 210 10 9 406 3 352 5.04e-50 181
MS.gene007427.t1 AT3G61830 34.174 357 170 10 73 425 22 317 7.40e-50 182
MS.gene007427.t1 AT1G34390 32.266 406 204 10 31 427 27 370 1.73e-47 176
MS.gene007427.t1 AT5G37020 36.934 287 132 7 131 415 31 270 3.34e-47 177
MS.gene007427.t1 AT2G33860 33.427 356 176 11 131 475 2 307 8.87e-47 171
MS.gene007427.t1 AT1G34170 30.958 407 189 10 9 406 3 326 9.83e-44 163
MS.gene007427.t1 AT1G34170 30.958 407 189 10 9 406 3 326 4.64e-43 163
MS.gene007427.t1 AT2G46530 34.173 278 132 6 130 406 36 263 1.95e-41 157
MS.gene007427.t1 AT1G43950 38.537 205 112 6 31 230 27 222 1.14e-34 131
MS.gene007427.t1 AT3G25730 26.738 187 108 4 82 254 122 293 4.86e-12 68.2
MS.gene007427.t1 AT2G46870 37.113 97 60 1 123 219 27 122 7.67e-12 67.4
MS.gene007427.t1 AT1G13260 30.882 136 75 3 118 251 175 293 8.10e-11 64.3

Find 151 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAAGTTGGCATTGGAAAT+TGG 0.228346 7.3:-11776880 None:intergenic
TGGAATGAAAGACGGAATTT+TGG 0.237258 7.3:-11775171 None:intergenic
CATCAACGTGTCTGAAATTA+AGG 0.241218 7.3:+11775313 MS.gene007427:CDS
TGGCCATCAATTGGGAAATC+TGG 0.249420 7.3:-11776860 None:intergenic
GGCATTTCAGGCACGTTTAT+AGG 0.250063 7.3:+11775501 MS.gene007427:CDS
GCATTTCAGGCACGTTTATA+GGG 0.272489 7.3:+11775502 MS.gene007427:CDS
CTTGTGAAAACTTCTTTAAT+TGG 0.278075 7.3:+11775938 MS.gene007427:CDS
CAGCTATGGCATGCCGTTGC+AGG 0.280375 7.3:+11775050 MS.gene007427:CDS
ATGGCGAAAAGTGGCATTTC+AGG 0.309403 7.3:+11775489 MS.gene007427:CDS
CGGAACTATTGCTTCTGTTC+AGG 0.311558 7.3:+11776048 MS.gene007427:CDS
GTTGGAGTCGATCCTTTGTT+AGG 0.313766 7.3:+11775671 MS.gene007427:CDS
CTCCCAGATTTCCCAATTGA+TGG 0.331554 7.3:+11776857 MS.gene007427:CDS
TTAGGATTTAGAAGGTTGTT+TGG 0.339574 7.3:-11776902 None:intergenic
TTCAGCTAACCCTCCTCTTC+AGG 0.348707 7.3:+11775445 MS.gene007427:CDS
TTGGAATATTAGGATTTAGA+AGG 0.349891 7.3:-11776910 None:intergenic
TTTGCAATGCCAAGTTATTT+GGG 0.350490 7.3:-11777093 None:intergenic
TTGGAATTCGGAGGGCTAAA+AGG 0.350812 7.3:+11775639 MS.gene007427:CDS
TATTATTATTAAACGGTTGT+TGG 0.355810 7.3:-11777048 None:intergenic
ATTGGAAATTGGCCATCAAT+TGG 0.356580 7.3:-11776869 None:intergenic
CATGCCGGCAGGACTAGTTT+CGG 0.360765 7.3:-11776945 None:intergenic
AGAAGGTTGTTTGGAAAAGT+TGG 0.365277 7.3:-11776893 None:intergenic
TGGAAATCTGGTAGTGGAAT+TGG 0.365957 7.3:+11775695 MS.gene007427:CDS
CTGCGAATGTTTCTTCGCAT+TGG 0.366575 7.3:-11777351 None:intergenic
CAGTGTCGACTTGTATTGTT+TGG 0.368403 7.3:-11777222 None:intergenic
AATGGAAGATTATGAAAATC+TGG 0.372719 7.3:-11777004 None:intergenic
TCAAGGATAAGTTGGTTTAT+CGG 0.374081 7.3:+11776028 MS.gene007427:CDS
GGAGCCAGGCATGGTCATTT+CGG 0.375741 7.3:+11776971 MS.gene007427:CDS
TTTGATAATGATGGTGTTGC+TGG 0.376636 7.3:+11775290 MS.gene007427:CDS
CTAACTTGGTTAATATTCAT+AGG 0.385591 7.3:-11775266 None:intergenic
AAGAGGCATTTGTTGACAAC+TGG 0.392584 7.3:+11775533 MS.gene007427:CDS
CCTTTGTTAGGGTGGAAATC+TGG 0.395570 7.3:+11775683 MS.gene007427:CDS
GGTAATCTCAATTTCTTCCT+TGG 0.395833 7.3:-11776830 None:intergenic
TTGGAACAGCACTTCAGATT+AGG 0.401029 7.3:+11775957 MS.gene007427:CDS
GCGATCTTCATGTTGGAATT+CGG 0.404653 7.3:+11775627 MS.gene007427:CDS
CTGGCTCCCTGCATGCCGGC+AGG 0.407927 7.3:-11776956 None:intergenic
GCCATCTTGAACCTCATTCC+AGG 0.409391 7.3:-11775986 None:intergenic
TTAAACGGTTGTTGGAAACT+AGG 0.416552 7.3:-11777040 None:intergenic
AACTAGTCCTGCCGGCATGC+AGG 0.419630 7.3:+11776949 MS.gene007427:CDS
CAATCCAACTGAGATGAATA+TGG 0.421601 7.3:+11774983 MS.gene007427:CDS
AAAACATGTGAGTTAACTTC+TGG 0.421701 7.3:-11775089 None:intergenic
AGCGACAAGAAACTTGCGTC+TGG 0.427650 7.3:+11775572 MS.gene007427:CDS
TTGGAAATTGGCCATCAATT+GGG 0.428714 7.3:-11776868 None:intergenic
TGCACAATCTTCAGAGAAAC+CGG 0.428735 7.3:+11777165 MS.gene007427:CDS
GTCGCAATATTATTATTAAA+CGG 0.430671 7.3:-11777055 None:intergenic
CTTATTGCTTCAACTCTACA+TGG 0.431451 7.3:-11775191 None:intergenic
CTGCCGGCATGCAGGGAGCC+AGG 0.432868 7.3:+11776957 MS.gene007427:CDS
ACATTAGAGATGAAACATTC+AGG 0.433701 7.3:+11777379 MS.gene007427:CDS
GAAATGTTCTCACTGGTGTT+CGG 0.434122 7.3:-11777118 None:intergenic
AGTTGAAGCAATAAGATATA+TGG 0.445009 7.3:+11775199 MS.gene007427:CDS
CTAGGCTGAAAGAGACCTAA+TGG 0.448362 7.3:-11777022 None:intergenic
CATCATTATCAAAACTAACT+TGG 0.449861 7.3:-11775280 None:intergenic
TGATGAGTCCTCAGTTTCAA+TGG 0.449908 7.3:-11776008 None:intergenic
GATAATAAACTTCGAAGAAA+CGG 0.452871 7.3:+11775770 MS.gene007427:CDS
GCTAATAAGTGATGGAATGA+TGG 0.454476 7.3:+11775808 MS.gene007427:CDS
GTTGTCAACAAATGCCTCTT+CGG 0.456311 7.3:-11775530 None:intergenic
ATGCCGGCAGGACTAGTTTC+GGG 0.456648 7.3:-11776944 None:intergenic
TTCTTCCTTGGCGGTATGAA+AGG 0.458131 7.3:-11776818 None:intergenic
CGCCGAGCATGCATGTGAAC+CGG 0.459270 7.3:+11775130 MS.gene007427:CDS
AGTTTCTTGTCGCTGACAAA+AGG 0.461470 7.3:-11775563 None:intergenic
GTGGTTTATTATCCTCGGTC+AGG 0.470650 7.3:+11775902 MS.gene007427:CDS
CACCGGTTCACATGCATGCT+CGG 0.471821 7.3:-11775132 None:intergenic
AAGTGATGGAATGATGGGTA+GGG 0.472687 7.3:+11775814 MS.gene007427:CDS
GACTCCATATTCATCTCAGT+TGG 0.472803 7.3:-11774987 None:intergenic
TTGGAGTCGATCCTTTGTTA+GGG 0.473989 7.3:+11775672 MS.gene007427:CDS
ATTTGTCCTGCACCACCTTA+CGG 0.476461 7.3:+11775719 MS.gene007427:CDS
CGAAGAAACGGTAAAGGTAA+TGG 0.476494 7.3:+11775782 MS.gene007427:CDS
TTGATGTGGTTTATTATCCT+CGG 0.489017 7.3:+11775897 MS.gene007427:CDS
TTGTTTGGAAAAGTTGGCAT+TGG 0.489751 7.3:-11776887 None:intergenic
AAGTTATTTGGGACAGTCAT+CGG 0.489998 7.3:-11777082 None:intergenic
GGATAATAAACCACATCAAA+CGG 0.491751 7.3:-11775893 None:intergenic
GGCCATCAATTGGGAAATCT+GGG 0.492331 7.3:-11776859 None:intergenic
AGGACTCATCAAGGATAAGT+TGG 0.493550 7.3:+11776020 MS.gene007427:CDS
CTTCAGATTAGGTGGTGTCC+TGG 0.494054 7.3:+11775968 MS.gene007427:CDS
TGGTGCGGCTTTGCATGATC+CGG 0.495348 7.3:-11777184 None:intergenic
AATCTCAATTTCTTCCTTGG+CGG 0.497432 7.3:-11776827 None:intergenic
CATCAGATGTACGTGTCGGC+AGG 0.505339 7.3:-11777303 None:intergenic
TAAGTGATGGAATGATGGGT+AGG 0.517866 7.3:+11775813 MS.gene007427:CDS
TTCAGGCTGCTGATCCGTCA+TGG 0.519149 7.3:+11776065 MS.gene007427:CDS
ACTAGTCCTGCCGGCATGCA+GGG 0.520362 7.3:+11776950 MS.gene007427:CDS
ATCTTCATGTTGGAATTCGG+AGG 0.523611 7.3:+11775630 MS.gene007427:CDS
GGCATGCAGGGAGCCAGGCA+TGG 0.527776 7.3:+11776962 MS.gene007427:CDS
AAGACCGAAATGACCATGCC+TGG 0.532259 7.3:-11776975 None:intergenic
AATCCTCCGTAAGGTGGTGC+AGG 0.533772 7.3:-11775725 None:intergenic
TTAGGGTGGAAATCTGGTAG+TGG 0.537403 7.3:+11775689 MS.gene007427:CDS
AGCGTTTCTGCACAATATCT+AGG 0.540389 7.3:-11775404 None:intergenic
GCGACAAGAAACTTGCGTCT+GGG 0.540853 7.3:+11775573 MS.gene007427:CDS
GGCGGTATGAAAGGCGAAAG+AGG 0.541655 7.3:-11776809 None:intergenic
GAGTAAGCACTGAAATTCAC+CGG 0.548533 7.3:-11775149 None:intergenic
GATGACTGTCCCAAATAACT+TGG 0.549303 7.3:+11777084 MS.gene007427:CDS
AGGATGTTCATGGCGAAAAG+TGG 0.550349 7.3:+11775480 MS.gene007427:CDS
CGACAAGAAACTTGCGTCTG+GGG 0.550603 7.3:+11775574 MS.gene007427:CDS
AATGGATTGCTAATAAGTGA+TGG 0.550837 7.3:+11775800 MS.gene007427:CDS
TTACCCGAAACTAGTCCTGC+CGG 0.553790 7.3:+11776941 MS.gene007427:CDS
AAGATTATGAAAATCTGGTA+AGG 0.555027 7.3:-11776999 None:intergenic
GCTAAAAGGCGAAATAATGT+TGG 0.555377 7.3:+11775653 MS.gene007427:CDS
ATGCCTGGCTCCCTGCATGC+CGG 0.557141 7.3:-11776960 None:intergenic
GTGATGGAATGATGGGTAGG+GGG 0.558347 7.3:+11775816 MS.gene007427:CDS
CATTTCAGGCACGTTTATAG+GGG 0.562067 7.3:+11775503 MS.gene007427:CDS
TTGCACCATTCCTCCTGCAA+CGG 0.567997 7.3:-11775063 None:intergenic
AGTGATGGAATGATGGGTAG+GGG 0.568376 7.3:+11775815 MS.gene007427:CDS
GGCATTTGTTGACAACTGGA+TGG 0.569244 7.3:+11775537 MS.gene007427:CDS
TTAGGTGGTGTCCTGGAATG+AGG 0.569864 7.3:+11775975 MS.gene007427:CDS
ATTGGGAAATCTGGGAGTTG+AGG 0.570713 7.3:-11776851 None:intergenic
TTGAAACTGAGGACTCATCA+AGG 0.572823 7.3:+11776011 MS.gene007427:CDS
AAACTTCGAAGAAACGGTAA+AGG 0.575815 7.3:+11775776 MS.gene007427:CDS
GAGACTTCATCAGAAAAGCT+AGG 0.576418 7.3:+11777482 MS.gene007427:intron
AACGATGGAAATCCTCCGTA+AGG 0.577357 7.3:-11775734 None:intergenic
GAAAACGGCGATCTTCATGT+TGG 0.577451 7.3:+11775620 MS.gene007427:CDS
AGAGTGTGGACCCTCAGCTA+TGG 0.582931 7.3:+11775036 MS.gene007427:CDS
GAGTCGATCCTTTGTTAGGG+TGG 0.585067 7.3:+11775675 MS.gene007427:CDS
CTATGGCATGCCGTTGCAGG+AGG 0.585809 7.3:+11775053 MS.gene007427:CDS
TAATATGCAGCCGTTTGATG+TGG 0.585844 7.3:+11775883 MS.gene007427:CDS
CTAATAAGTGATGGAATGAT+GGG 0.591799 7.3:+11775809 MS.gene007427:CDS
GCAACGGCATGCCATAGCTG+AGG 0.591988 7.3:-11775047 None:intergenic
GCATGCTCGGCGTGACCCTG+AGG 0.592711 7.3:-11775119 None:intergenic
CATGCTCGGCGTGACCCTGA+GGG 0.593580 7.3:-11775118 None:intergenic
CGTCATGGTCTGATTCTATG+TGG 0.597184 7.3:+11776080 MS.gene007427:CDS
GTTTGCATCAGATTGTGTCA+AGG 0.603398 7.3:-11775360 None:intergenic
CGAGCATGAAATGTTCTCAC+TGG 0.604009 7.3:-11777125 None:intergenic
GCATGCCGTTGCAGGAGGAA+TGG 0.606658 7.3:+11775058 MS.gene007427:CDS
ATGAAGTGTATGCAAAACTC+AGG 0.607388 7.3:+11775237 MS.gene007427:CDS
GATACTATTTCAACTTGCCA+CGG 0.610748 7.3:-11776770 None:intergenic
GCGGTATGAAAGGCGAAAGA+GGG 0.612138 7.3:-11776808 None:intergenic
ACTCTACATGGAATGAAAGA+CGG 0.613123 7.3:-11775179 None:intergenic
CAACGGCATGCCATAGCTGA+GGG 0.613865 7.3:-11775046 None:intergenic
TCCTGGAATGAGGTTCAAGA+TGG 0.614384 7.3:+11775985 MS.gene007427:CDS
TCTTCATGTTGGAATTCGGA+GGG 0.615735 7.3:+11775631 MS.gene007427:CDS
TTTCGCCTTTCATACCGCCA+AGG 0.619271 7.3:+11776813 MS.gene007427:CDS
TCTTCCTCTCCCGAAAACGA+TGG 0.620463 7.3:-11775749 None:intergenic
GAACAGCACTTCAGATTAGG+TGG 0.620797 7.3:+11775960 MS.gene007427:CDS
TTTATAGGGGAACGCCGAAG+AGG 0.625074 7.3:+11775516 MS.gene007427:CDS
GTTATTGAAGCAATAAAACT+CGG 0.633322 7.3:+11775857 MS.gene007427:CDS
CCAGATTTCCACCCTAACAA+AGG 0.634082 7.3:-11775683 None:intergenic
CTCTCATCAGATGTACGTGT+CGG 0.637287 7.3:-11777307 None:intergenic
CAAGATGGCCATTGAAACTG+AGG 0.643200 7.3:+11776000 MS.gene007427:CDS
AAAGGCGAAAGAGGGATCGA+AGG 0.643435 7.3:-11776800 None:intergenic
GATGGAAATCCTCCGTAAGG+TGG 0.645097 7.3:-11775731 None:intergenic
TTCTATGTGGAGACTTCTCG+AGG 0.645176 7.3:+11776093 MS.gene007427:CDS
ATGTGAAAAGAGTGAATCCG+TGG 0.650057 7.3:+11776753 MS.gene007427:CDS
CAAACAATACAAGTCGACAC+TGG 0.651728 7.3:+11777223 MS.gene007427:CDS
TCTGATGCAAACAATGGTGG+TGG 0.655667 7.3:+11775371 MS.gene007427:CDS
CAATGCGAAGAAACATTCGC+AGG 0.655730 7.3:+11777352 MS.gene007427:CDS
CATCTGATGAGAGGTTCGAG+TGG 0.680653 7.3:+11777317 MS.gene007427:CDS
TGTCCTGCACCACCTTACGG+AGG 0.685773 7.3:+11775722 MS.gene007427:CDS
CACATAGAATCAGACCATGA+CGG 0.689130 7.3:-11776079 None:intergenic
CGACACGTACATCTGATGAG+AGG 0.689516 7.3:+11777308 MS.gene007427:CDS
ACTTCATCAGAAAAGCTAGG+AGG 0.691502 7.3:+11777485 MS.gene007427:CDS
ACACAATCTGATGCAAACAA+TGG 0.696099 7.3:+11775365 MS.gene007427:CDS
CAATCTGATGCAAACAATGG+TGG 0.722659 7.3:+11775368 MS.gene007427:CDS
AACTCAGGAGTACCTGACCG+AGG 0.728041 7.3:-11775914 None:intergenic
TTAGCTGAATAGTCCAAACG+AGG 0.756003 7.3:-11775431 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAATTGGAATATT+AGG - chr7.3:11776923-11776942 None:intergenic 10.0%
!! TAGTAATATATGCAATAAAA+AGG - chr7.3:11776630-11776649 None:intergenic 15.0%
!! TTAATGTATATATTTGTGTA+TGG + chr7.3:11776513-11776532 MS.gene007427:intron 15.0%
!!! GTTAGATTTTACTTATATTT+TGG + chr7.3:11776219-11776238 MS.gene007427:intron 15.0%
!!! TTTTAGCAAATTCTAATAAT+AGG - chr7.3:11776408-11776427 None:intergenic 15.0%
!! ATTCAAAGTAAAATATGTGA+AGG - chr7.3:11776475-11776494 None:intergenic 20.0%
!! GTCGCAATATTATTATTAAA+CGG - chr7.3:11777058-11777077 None:intergenic 20.0%
!! TATTATTATTAAACGGTTGT+TGG - chr7.3:11777051-11777070 None:intergenic 20.0%
!! TCAAGTAAATTAATTCTAGA+GGG - chr7.3:11776142-11776161 None:intergenic 20.0%
!!! GAATGTTTTGAGAATAATAA+CGG + chr7.3:11776179-11776198 MS.gene007427:intron 20.0%
! AACTTAAAAGGATTATGCTT+TGG - chr7.3:11776358-11776377 None:intergenic 25.0%
! AAGATTATGAAAATCTGGTA+AGG - chr7.3:11777002-11777021 None:intergenic 25.0%
! AATGGAAGATTATGAAAATC+TGG - chr7.3:11777007-11777026 None:intergenic 25.0%
! AGTTGAAGCAATAAGATATA+TGG + chr7.3:11775199-11775218 MS.gene007427:CDS 25.0%
! CATCATTATCAAAACTAACT+TGG - chr7.3:11775283-11775302 None:intergenic 25.0%
! CTAACTTGGTTAATATTCAT+AGG - chr7.3:11775269-11775288 None:intergenic 25.0%
! CTCAAGTAAATTAATTCTAG+AGG - chr7.3:11776143-11776162 None:intergenic 25.0%
! CTTGTGAAAACTTCTTTAAT+TGG + chr7.3:11775938-11775957 MS.gene007427:CDS 25.0%
! GATAATAAACTTCGAAGAAA+CGG + chr7.3:11775770-11775789 MS.gene007427:CDS 25.0%
! GTATGGTAATATAGATACAA+TGG + chr7.3:11776530-11776549 MS.gene007427:intron 25.0%
! GTTATTGAAGCAATAAAACT+CGG + chr7.3:11775857-11775876 MS.gene007427:CDS 25.0%
! TCTCTTCTTACAATTTCATT+AGG - chr7.3:11776569-11776588 None:intergenic 25.0%
! TTGGAATATTAGGATTTAGA+AGG - chr7.3:11776913-11776932 None:intergenic 25.0%
!! GATTTTCATAATCTTCCATT+AGG + chr7.3:11777007-11777026 MS.gene007427:CDS 25.0%
!! GTTTCGGGTAAATAAAAAAT+TGG - chr7.3:11776932-11776951 None:intergenic 25.0%
!! TGATTTGTATAAATTCCACA+AGG - chr7.3:11776289-11776308 None:intergenic 25.0%
!! TTTTCATCAGTACCATAAAT+TGG + chr7.3:11776376-11776395 MS.gene007427:intron 25.0%
!!! ATGATTAGTCATTTTCTTCT+CGG - chr7.3:11777260-11777279 None:intergenic 25.0%
!!! CAAGTTAGTTTTGATAATGA+TGG + chr7.3:11775281-11775300 MS.gene007427:CDS 25.0%
!!! TCATACTTTTTAGGTTACAT+GGG + chr7.3:11776709-11776728 MS.gene007427:intron 25.0%
!!! TTCACATTTTTAAGTATCTC+AGG - chr7.3:11776740-11776759 None:intergenic 25.0%
!!! TTTCTGATGTCATACTTTTT+AGG + chr7.3:11776700-11776719 MS.gene007427:intron 25.0%
AAAACATGTGAGTTAACTTC+TGG - chr7.3:11775092-11775111 None:intergenic 30.0%
AATAGGAAGCTTCCAATTTA+TGG - chr7.3:11776391-11776410 None:intergenic 30.0%
ACATTAGAGATGAAACATTC+AGG + chr7.3:11777379-11777398 MS.gene007427:CDS 30.0%
CTACATCACTATCATACATT+AGG + chr7.3:11776437-11776456 MS.gene007427:intron 30.0%
GGATAATAAACCACATCAAA+CGG - chr7.3:11775896-11775915 None:intergenic 30.0%
TAGATACAATGGAACATTGT+TGG + chr7.3:11776541-11776560 MS.gene007427:intron 30.0%
TGACATCAGAAAATCATTCA+CGG - chr7.3:11776692-11776711 None:intergenic 30.0%
TTAGGATTTAGAAGGTTGTT+TGG - chr7.3:11776905-11776924 None:intergenic 30.0%
TTGATGTGGTTTATTATCCT+CGG + chr7.3:11775897-11775916 MS.gene007427:CDS 30.0%
TTGCAAGAATACACATTCTA+TGG - chr7.3:11776323-11776342 None:intergenic 30.0%
TTTGCAATGCCAAGTTATTT+GGG - chr7.3:11777096-11777115 None:intergenic 30.0%
! CTAATAAGTGATGGAATGAT+GGG + chr7.3:11775809-11775828 MS.gene007427:CDS 30.0%
! CTAATGTATGATAGTGATGT+AGG - chr7.3:11776439-11776458 None:intergenic 30.0%
! TATGATAGTGATGTAGGTAT+AGG - chr7.3:11776433-11776452 None:intergenic 30.0%
! TTTTGCAATGCCAAGTTATT+TGG - chr7.3:11777097-11777116 None:intergenic 30.0%
!! AATGGATTGCTAATAAGTGA+TGG + chr7.3:11775800-11775819 MS.gene007427:CDS 30.0%
!! GGTACTGATGAAAACTTAAA+AGG - chr7.3:11776370-11776389 None:intergenic 30.0%
!! TCAAGGATAAGTTGGTTTAT+CGG + chr7.3:11776028-11776047 MS.gene007427:CDS 30.0%
!!! GTCATACTTTTTAGGTTACA+TGG + chr7.3:11776708-11776727 MS.gene007427:intron 30.0%
!!! GTGTTTTTGAGATCTGAAAA+CGG + chr7.3:11775605-11775624 MS.gene007427:CDS 30.0%
AAACTTCGAAGAAACGGTAA+AGG + chr7.3:11775776-11775795 MS.gene007427:CDS 35.0%
AATCTCAATTTCTTCCTTGG+CGG - chr7.3:11776830-11776849 None:intergenic 35.0%
ACACAATCTGATGCAAACAA+TGG + chr7.3:11775365-11775384 MS.gene007427:CDS 35.0%
ACTCTACATGGAATGAAAGA+CGG - chr7.3:11775182-11775201 None:intergenic 35.0%
AGAAGGTTGTTTGGAAAAGT+TGG - chr7.3:11776896-11776915 None:intergenic 35.0%
ATGAAGTGTATGCAAAACTC+AGG + chr7.3:11775237-11775256 MS.gene007427:CDS 35.0%
ATTGGAAATTGGCCATCAAT+TGG - chr7.3:11776872-11776891 None:intergenic 35.0%
CAATCCAACTGAGATGAATA+TGG + chr7.3:11774983-11775002 MS.gene007427:CDS 35.0%
CTTATTGCTTCAACTCTACA+TGG - chr7.3:11775194-11775213 None:intergenic 35.0%
GAAAAATATCCTGAAGAGGA+GGG - chr7.3:11775457-11775476 None:intergenic 35.0%
GAAAAATGTGAACAAGAGTG+TGG + chr7.3:11775022-11775041 MS.gene007427:CDS 35.0%
GATACTATTTCAACTTGCCA+CGG - chr7.3:11776773-11776792 None:intergenic 35.0%
GCTAAAAGGCGAAATAATGT+TGG + chr7.3:11775653-11775672 MS.gene007427:CDS 35.0%
GGTAATCTCAATTTCTTCCT+TGG - chr7.3:11776833-11776852 None:intergenic 35.0%
TTAAACGGTTGTTGGAAACT+AGG - chr7.3:11777043-11777062 None:intergenic 35.0%
TTGGAAATTGGCCATCAATT+GGG - chr7.3:11776871-11776890 None:intergenic 35.0%
TTGGGAAAAATATCCTGAAG+AGG - chr7.3:11775461-11775480 None:intergenic 35.0%
TTGTCATATAGCAGCTATAG+TGG + chr7.3:11776248-11776267 MS.gene007427:intron 35.0%
TTGTTTGGAAAAGTTGGCAT+TGG - chr7.3:11776890-11776909 None:intergenic 35.0%
! AAGTTATTTGGGACAGTCAT+CGG - chr7.3:11777085-11777104 None:intergenic 35.0%
! ATTTTTCCCAAGGATGTTCA+TGG + chr7.3:11775470-11775489 MS.gene007427:CDS 35.0%
! CATCAACGTGTCTGAAATTA+AGG + chr7.3:11775313-11775332 MS.gene007427:CDS 35.0%
! GAAAAGTTGGCATTGGAAAT+TGG - chr7.3:11776883-11776902 None:intergenic 35.0%
! GAAGTTTTCACAAGAAACTC+AGG - chr7.3:11775932-11775951 None:intergenic 35.0%
! GAGTTTTGCATACACTTCAT+CGG - chr7.3:11775237-11775256 None:intergenic 35.0%
! GCTAATAAGTGATGGAATGA+TGG + chr7.3:11775808-11775827 MS.gene007427:CDS 35.0%
! TCTTCAGGATATTTTTCCCA+AGG + chr7.3:11775460-11775479 MS.gene007427:CDS 35.0%
! TGGAATGAAAGACGGAATTT+TGG - chr7.3:11775174-11775193 None:intergenic 35.0%
!! TTTGATAATGATGGTGTTGC+TGG + chr7.3:11775290-11775309 MS.gene007427:CDS 35.0%
ACTTCATCAGAAAAGCTAGG+AGG + chr7.3:11777485-11777504 MS.gene007427:CDS 40.0%
AGCGTTTCTGCACAATATCT+AGG - chr7.3:11775407-11775426 None:intergenic 40.0%
AGGACTCATCAAGGATAAGT+TGG + chr7.3:11776020-11776039 MS.gene007427:CDS 40.0%
AGTTTCTTGTCGCTGACAAA+AGG - chr7.3:11775566-11775585 None:intergenic 40.0%
ATCATTCACGGCTGAAACAA+AGG - chr7.3:11776680-11776699 None:intergenic 40.0%
ATCTTCATGTTGGAATTCGG+AGG + chr7.3:11775630-11775649 MS.gene007427:CDS 40.0%
ATGTGAAAAGAGTGAATCCG+TGG + chr7.3:11776753-11776772 MS.gene007427:CDS 40.0%
CAAACAATACAAGTCGACAC+TGG + chr7.3:11777223-11777242 MS.gene007427:CDS 40.0%
CAATCTGATGCAAACAATGG+TGG + chr7.3:11775368-11775387 MS.gene007427:CDS 40.0%
CACATAGAATCAGACCATGA+CGG - chr7.3:11776082-11776101 None:intergenic 40.0%
CACTATATTGCTATGCCTTG+TGG + chr7.3:11776271-11776290 MS.gene007427:intron 40.0%
CATTTCAGGCACGTTTATAG+GGG + chr7.3:11775503-11775522 MS.gene007427:CDS 40.0%
CGAAGAAACGGTAAAGGTAA+TGG + chr7.3:11775782-11775801 MS.gene007427:CDS 40.0%
GAAATGTTCTCACTGGTGTT+CGG - chr7.3:11777121-11777140 None:intergenic 40.0%
GACTCCATATTCATCTCAGT+TGG - chr7.3:11774990-11775009 None:intergenic 40.0%
GAGACTTCATCAGAAAAGCT+AGG + chr7.3:11777482-11777501 MS.gene007427:intron 40.0%
GATGACTGTCCCAAATAACT+TGG + chr7.3:11777084-11777103 MS.gene007427:CDS 40.0%
GCATTTCAGGCACGTTTATA+GGG + chr7.3:11775502-11775521 MS.gene007427:CDS 40.0%
GCGATCTTCATGTTGGAATT+CGG + chr7.3:11775627-11775646 MS.gene007427:CDS 40.0%
GGAAAAATATCCTGAAGAGG+AGG - chr7.3:11775458-11775477 None:intergenic 40.0%
GTAAAATATGTGAAGGCCCT+CGG - chr7.3:11776468-11776487 None:intergenic 40.0%
GTTGTCAACAAATGCCTCTT+CGG - chr7.3:11775533-11775552 None:intergenic 40.0%
GTTTGCATCAGATTGTGTCA+AGG - chr7.3:11775363-11775382 None:intergenic 40.0%
TAAAATATGTGAAGGCCCTC+GGG - chr7.3:11776467-11776486 None:intergenic 40.0%
TAATATGCAGCCGTTTGATG+TGG + chr7.3:11775883-11775902 MS.gene007427:CDS 40.0%
TCTTCATGTTGGAATTCGGA+GGG + chr7.3:11775631-11775650 MS.gene007427:CDS 40.0%
TGATGAGTCCTCAGTTTCAA+TGG - chr7.3:11776011-11776030 None:intergenic 40.0%
TGCACAATCTTCAGAGAAAC+CGG + chr7.3:11777165-11777184 MS.gene007427:CDS 40.0%
TTAGCTGAATAGTCCAAACG+AGG - chr7.3:11775434-11775453 None:intergenic 40.0%
TTGAAACTGAGGACTCATCA+AGG + chr7.3:11776011-11776030 MS.gene007427:CDS 40.0%
TTGGAACAGCACTTCAGATT+AGG + chr7.3:11775957-11775976 MS.gene007427:CDS 40.0%
TTGGAGTCGATCCTTTGTTA+GGG + chr7.3:11775672-11775691 MS.gene007427:CDS 40.0%
! ACATGTTTTCTACTTCCCTC+AGG + chr7.3:11775103-11775122 MS.gene007427:CDS 40.0%
! CATGTTTTCTACTTCCCTCA+GGG + chr7.3:11775104-11775123 MS.gene007427:CDS 40.0%
! TTTGGCCAAAAAGCACAAGT+TGG - chr7.3:11777207-11777226 None:intergenic 40.0%
! TTTTCGCCATGAACATCCTT+GGG - chr7.3:11775479-11775498 None:intergenic 40.0%
!! AAGAGGCATTTGTTGACAAC+TGG + chr7.3:11775533-11775552 MS.gene007427:CDS 40.0%
!! AAGTGATGGAATGATGGGTA+GGG + chr7.3:11775814-11775833 MS.gene007427:CDS 40.0%
!! CAGTGTCGACTTGTATTGTT+TGG - chr7.3:11777225-11777244 None:intergenic 40.0%
!! GAGTAAGCACTGAAATTCAC+CGG - chr7.3:11775152-11775171 None:intergenic 40.0%
!! TAAGTGATGGAATGATGGGT+AGG + chr7.3:11775813-11775832 MS.gene007427:CDS 40.0%
!! TGGAAATCTGGTAGTGGAAT+TGG + chr7.3:11775695-11775714 MS.gene007427:CDS 40.0%
!!! AGAAACGCTTTTTCCTCGTT+TGG + chr7.3:11775418-11775437 MS.gene007427:CDS 40.0%
AAAATATGTGAAGGCCCTCG+GGG - chr7.3:11776466-11776485 None:intergenic 45.0%
AACGATGGAAATCCTCCGTA+AGG - chr7.3:11775737-11775756 None:intergenic 45.0%
AGGATGTTCATGGCGAAAAG+TGG + chr7.3:11775480-11775499 MS.gene007427:CDS 45.0%
ATGGCGAAAAGTGGCATTTC+AGG + chr7.3:11775489-11775508 MS.gene007427:CDS 45.0%
ATTGGGAAATCTGGGAGTTG+AGG - chr7.3:11776854-11776873 None:intergenic 45.0%
ATTTGTCCTGCACCACCTTA+CGG + chr7.3:11775719-11775738 MS.gene007427:CDS 45.0%
CAAGATGGCCATTGAAACTG+AGG + chr7.3:11776000-11776019 MS.gene007427:CDS 45.0%
CAATGCGAAGAAACATTCGC+AGG + chr7.3:11777352-11777371 MS.gene007427:CDS 45.0%
CATACATTAGGTATCCCCGA+GGG + chr7.3:11776449-11776468 MS.gene007427:intron 45.0%
CCAGATTTCCACCCTAACAA+AGG - chr7.3:11775686-11775705 None:intergenic 45.0%
CCTTTGTTAGGGTGGAAATC+TGG + chr7.3:11775683-11775702 MS.gene007427:CDS 45.0%
CGAGCATGAAATGTTCTCAC+TGG - chr7.3:11777128-11777147 None:intergenic 45.0%
CGGAACTATTGCTTCTGTTC+AGG + chr7.3:11776048-11776067 MS.gene007427:CDS 45.0%
CGTCATGGTCTGATTCTATG+TGG + chr7.3:11776080-11776099 MS.gene007427:CDS 45.0%
CTAGGCTGAAAGAGACCTAA+TGG - chr7.3:11777025-11777044 None:intergenic 45.0%
CTCCCAGATTTCCCAATTGA+TGG + chr7.3:11776857-11776876 MS.gene007427:CDS 45.0%
CTCTCATCAGATGTACGTGT+CGG - chr7.3:11777310-11777329 None:intergenic 45.0%
CTGCGAATGTTTCTTCGCAT+TGG - chr7.3:11777354-11777373 None:intergenic 45.0%
GAAAACGGCGATCTTCATGT+TGG + chr7.3:11775620-11775639 MS.gene007427:CDS 45.0%
GAACAGCACTTCAGATTAGG+TGG + chr7.3:11775960-11775979 MS.gene007427:CDS 45.0%
GGCATTTCAGGCACGTTTAT+AGG + chr7.3:11775501-11775520 MS.gene007427:CDS 45.0%
GGCCATCAATTGGGAAATCT+GGG - chr7.3:11776862-11776881 None:intergenic 45.0%
GTGGTTTATTATCCTCGGTC+AGG + chr7.3:11775902-11775921 MS.gene007427:CDS 45.0%
GTTGGAGTCGATCCTTTGTT+AGG + chr7.3:11775671-11775690 MS.gene007427:CDS 45.0%
TCATACATTAGGTATCCCCG+AGG + chr7.3:11776448-11776467 MS.gene007427:intron 45.0%
TCCTGGAATGAGGTTCAAGA+TGG + chr7.3:11775985-11776004 MS.gene007427:CDS 45.0%
TCTGATGCAAACAATGGTGG+TGG + chr7.3:11775371-11775390 MS.gene007427:CDS 45.0%
TGGCCATCAATTGGGAAATC+TGG - chr7.3:11776863-11776882 None:intergenic 45.0%
TTAGGGTGGAAATCTGGTAG+TGG + chr7.3:11775689-11775708 MS.gene007427:CDS 45.0%
TTCTATGTGGAGACTTCTCG+AGG + chr7.3:11776093-11776112 MS.gene007427:CDS 45.0%
TTCTTCCTTGGCGGTATGAA+AGG - chr7.3:11776821-11776840 None:intergenic 45.0%
TTGGAATTCGGAGGGCTAAA+AGG + chr7.3:11775639-11775658 MS.gene007427:CDS 45.0%
! CGGAGGATTTCCATCGTTTT+CGG + chr7.3:11775739-11775758 MS.gene007427:CDS 45.0%
! CTTTTCGCCATGAACATCCT+TGG - chr7.3:11775480-11775499 None:intergenic 45.0%
! GGAGGATTTCCATCGTTTTC+GGG + chr7.3:11775740-11775759 MS.gene007427:CDS 45.0%
! GGCATTTGTTGACAACTGGA+TGG + chr7.3:11775537-11775556 MS.gene007427:CDS 45.0%
!! AGTGATGGAATGATGGGTAG+GGG + chr7.3:11775815-11775834 MS.gene007427:CDS 45.0%
!! ATTTCCATCGTTTTCGGGAG+AGG + chr7.3:11775745-11775764 MS.gene007427:CDS 45.0%
!! CCAAAAAGCACAAGTTGGTG+CGG - chr7.3:11777202-11777221 None:intergenic 45.0%
AAAGGCGAAAGAGGGATCGA+AGG - chr7.3:11776803-11776822 None:intergenic 50.0%
AAGACCGAAATGACCATGCC+TGG - chr7.3:11776978-11776997 None:intergenic 50.0%
AGCGACAAGAAACTTGCGTC+TGG + chr7.3:11775572-11775591 MS.gene007427:CDS 50.0%
CATCTGATGAGAGGTTCGAG+TGG + chr7.3:11777317-11777336 MS.gene007427:CDS 50.0%
CGACAAGAAACTTGCGTCTG+GGG + chr7.3:11775574-11775593 MS.gene007427:CDS 50.0%
CGACACGTACATCTGATGAG+AGG + chr7.3:11777308-11777327 MS.gene007427:CDS 50.0%
CTTCAGATTAGGTGGTGTCC+TGG + chr7.3:11775968-11775987 MS.gene007427:CDS 50.0%
GAGTCGATCCTTTGTTAGGG+TGG + chr7.3:11775675-11775694 MS.gene007427:CDS 50.0%
GATGGAAATCCTCCGTAAGG+TGG - chr7.3:11775734-11775753 None:intergenic 50.0%
GCCATCTTGAACCTCATTCC+AGG - chr7.3:11775989-11776008 None:intergenic 50.0%
GCGACAAGAAACTTGCGTCT+GGG + chr7.3:11775573-11775592 MS.gene007427:CDS 50.0%
GCGGTATGAAAGGCGAAAGA+GGG - chr7.3:11776811-11776830 None:intergenic 50.0%
TCTTCCTCTCCCGAAAACGA+TGG - chr7.3:11775752-11775771 None:intergenic 50.0%
TTACCCGAAACTAGTCCTGC+CGG + chr7.3:11776941-11776960 MS.gene007427:CDS 50.0%
TTAGGTGGTGTCCTGGAATG+AGG + chr7.3:11775975-11775994 MS.gene007427:CDS 50.0%
TTCAGCTAACCCTCCTCTTC+AGG + chr7.3:11775445-11775464 MS.gene007427:CDS 50.0%
TTGCACCATTCCTCCTGCAA+CGG - chr7.3:11775066-11775085 None:intergenic 50.0%
TTTATAGGGGAACGCCGAAG+AGG + chr7.3:11775516-11775535 MS.gene007427:CDS 50.0%
TTTCGCCTTTCATACCGCCA+AGG + chr7.3:11776813-11776832 MS.gene007427:CDS 50.0%
! CCGCACCAACTTGTGCTTTT+TGG + chr7.3:11777199-11777218 MS.gene007427:CDS 50.0%
!! GTGATGGAATGATGGGTAGG+GGG + chr7.3:11775816-11775835 MS.gene007427:CDS 50.0%
AATCCTCCGTAAGGTGGTGC+AGG - chr7.3:11775728-11775747 None:intergenic 55.0%
AGAGTGTGGACCCTCAGCTA+TGG + chr7.3:11775036-11775055 MS.gene007427:CDS 55.0%
CAACGGCATGCCATAGCTGA+GGG - chr7.3:11775049-11775068 None:intergenic 55.0%
GGAGCCAGGCATGGTCATTT+CGG + chr7.3:11776971-11776990 MS.gene007427:CDS 55.0%
GGCGGTATGAAAGGCGAAAG+AGG - chr7.3:11776812-11776831 None:intergenic 55.0%
TGGTGCGGCTTTGCATGATC+CGG - chr7.3:11777187-11777206 None:intergenic 55.0%
TTCAGGCTGCTGATCCGTCA+TGG + chr7.3:11776065-11776084 MS.gene007427:CDS 55.0%
! CATCAGATGTACGTGTCGGC+AGG - chr7.3:11777306-11777325 None:intergenic 55.0%
!! AACTCAGGAGTACCTGACCG+AGG - chr7.3:11775917-11775936 None:intergenic 55.0%
!! ATGCCGGCAGGACTAGTTTC+GGG - chr7.3:11776947-11776966 None:intergenic 55.0%
!! CACCGGTTCACATGCATGCT+CGG - chr7.3:11775135-11775154 None:intergenic 55.0%
!! CATGCCGGCAGGACTAGTTT+CGG - chr7.3:11776948-11776967 None:intergenic 55.0%
!! TGGAATGATGGGTAGGGGGA+AGG + chr7.3:11775820-11775839 MS.gene007427:CDS 55.0%
AACTAGTCCTGCCGGCATGC+AGG + chr7.3:11776949-11776968 MS.gene007427:CDS 60.0%
ACTAGTCCTGCCGGCATGCA+GGG + chr7.3:11776950-11776969 MS.gene007427:CDS 60.0%
CAGCTATGGCATGCCGTTGC+AGG + chr7.3:11775050-11775069 MS.gene007427:CDS 60.0%
CGCCGAGCATGCATGTGAAC+CGG + chr7.3:11775130-11775149 MS.gene007427:CDS 60.0%
CTATGGCATGCCGTTGCAGG+AGG + chr7.3:11775053-11775072 MS.gene007427:CDS 60.0%
GCAACGGCATGCCATAGCTG+AGG - chr7.3:11775050-11775069 None:intergenic 60.0%
GCATGCCGTTGCAGGAGGAA+TGG + chr7.3:11775058-11775077 MS.gene007427:CDS 60.0%
TGTCCTGCACCACCTTACGG+AGG + chr7.3:11775722-11775741 MS.gene007427:CDS 60.0%
ATGCCTGGCTCCCTGCATGC+CGG - chr7.3:11776963-11776982 None:intergenic 65.0%
CATGCTCGGCGTGACCCTGA+GGG - chr7.3:11775121-11775140 None:intergenic 65.0%
GCATGCTCGGCGTGACCCTG+AGG - chr7.3:11775122-11775141 None:intergenic 70.0%
GGCATGCAGGGAGCCAGGCA+TGG + chr7.3:11776962-11776981 MS.gene007427:CDS 70.0%
CTGCCGGCATGCAGGGAGCC+AGG + chr7.3:11776957-11776976 MS.gene007427:CDS 75.0%
CTGGCTCCCTGCATGCCGGC+AGG - chr7.3:11776959-11776978 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 11774960 11777511 11774960 ID=MS.gene007427
chr7.3 mRNA 11774960 11777511 11774960 ID=MS.gene007427.t1;Parent=MS.gene007427
chr7.3 exon 11774960 11776114 11774960 ID=MS.gene007427.t1.exon1;Parent=MS.gene007427.t1
chr7.3 CDS 11774960 11776114 11774960 ID=cds.MS.gene007427.t1;Parent=MS.gene007427.t1
chr7.3 exon 11776722 11777400 11776722 ID=MS.gene007427.t1.exon2;Parent=MS.gene007427.t1
chr7.3 CDS 11776722 11777400 11776722 ID=cds.MS.gene007427.t1;Parent=MS.gene007427.t1
chr7.3 exon 11777483 11777511 11777483 ID=MS.gene007427.t1.exon3;Parent=MS.gene007427.t1
chr7.3 CDS 11777483 11777511 11777483 ID=cds.MS.gene007427.t1;Parent=MS.gene007427.t1
Gene Sequence

>MS.gene007427

ATGAAAGAAAAAAGAAAAGGTTGCAATCCAACTGAGATGAATATGGAGTCAAACAAGAAATTGAAAAATGTGAACAAGAGTGTGGACCCTCAGCTATGGCATGCCGTTGCAGGAGGAATGGTGCAAATGCCAGAAGTTAACTCACATGTTTTCTACTTCCCTCAGGGTCACGCCGAGCATGCATGTGAACCGGTGAATTTCAGTGCTTACTCCAAAATTCCGTCTTTCATTCCATGTAGAGTTGAAGCAATAAGATATATGGCTAATCATGAGACCGATGAAGTGTATGCAAAACTCAGGCTTGTTCCTATGAATATTAACCAAGTTAGTTTTGATAATGATGGTGTTGCTGGCATCAACGTGTCTGAAATTAAGGATAAACATCAATCTTTTGCGAAAACCTTGACACAATCTGATGCAAACAATGGTGGTGGCTTTTCTTGTCCTAGATATTGTGCAGAAACGCTTTTTCCTCGTTTGGACTATTCAGCTAACCCTCCTCTTCAGGATATTTTTCCCAAGGATGTTCATGGCGAAAAGTGGCATTTCAGGCACGTTTATAGGGGAACGCCGAAGAGGCATTTGTTGACAACTGGATGGAGTCCTTTTGTCAGCGACAAGAAACTTGCGTCTGGGGATTCGATTGTGTTTTTGAGATCTGAAAACGGCGATCTTCATGTTGGAATTCGGAGGGCTAAAAGGCGAAATAATGTTGGAGTCGATCCTTTGTTAGGGTGGAAATCTGGTAGTGGAATTGGAATTTGTCCTGCACCACCTTACGGAGGATTTCCATCGTTTTCGGGAGAGGAAGATAATAAACTTCGAAGAAACGGTAAAGGTAATGGATTGCTAATAAGTGATGGAATGATGGGTAGGGGGAAGGTGAAAGCTCTAGAAGTTATTGAAGCAATAAAACTCGGTACTAATATGCAGCCGTTTGATGTGGTTTATTATCCTCGGTCAGGTACTCCTGAGTTTCTTGTGAAAACTTCTTTAATTGGAACAGCACTTCAGATTAGGTGGTGTCCTGGAATGAGGTTCAAGATGGCCATTGAAACTGAGGACTCATCAAGGATAAGTTGGTTTATCGGAACTATTGCTTCTGTTCAGGCTGCTGATCCGTCATGGTCTGATTCTATGTGGAGACTTCTCGAGGTATATACATGTTTATTATACACTCCCTCTAGAATTAATTTACTTGAGAATTTGTTTTATTGATGAATGTTTTGAGAATAATAACGGTAAATACAGTAAAGTTAGTTAGATTTTACTTATATTTTGGTCAACGTTGTCATATAGCAGCTATAGTGGCACTATATTGCTATGCCTTGTGGAATTTATACAAATCACTATTGTTCTACCATAGAATGTGTATTCTTGCAACATTTTCTTTTTCCAAAGCATAATCCTTTTAAGTTTTCATCAGTACCATAAATTGGAAGCTTCCTATTATTAGAATTTGCTAAAAATCCTATACCTACATCACTATCATACATTAGGTATCCCCGAGGGCCTTCACATATTTTACTTTGAATACATTCAAAATTTGCAAGTTAATGTATATATTTGTGTATGGTAATATAGATACAATGGAACATTGTTGGTACCTAATGAAATTGTAAGAAGAGAATTAGATTAGAATTTCATACTAATGAAATTCACAGTGTCCTTTTTATTGCATATATTACTATGTCATTTTGAATTACATTAATTTTGACCTTTGTTTCAGCCGTGAATGATTTTCTGATGTCATACTTTTTAGGTTACATGGGATGAACCTGAGATACTTAAAAATGTGAAAAGAGTGAATCCGTGGCAAGTTGAAATAGTATCGAACATGCCTTCGATCCCTCTTTCGCCTTTCATACCGCCAAGGAAGAAATTGAGATTACCTCAACTCCCAGATTTCCCAATTGATGGCCAATTTCCAATGCCAACTTTTCCAAACAACCTTCTAAATCCTAATATTCCAATTTTTTATTTACCCGAAACTAGTCCTGCCGGCATGCAGGGAGCCAGGCATGGTCATTTCGGTCTTACCTTACCAGATTTTCATAATCTTCCATTAGGTCTCTTTCAGCCTAGTTTCCAACAACCGTTTAATAATAATATTGCGACGATGCCGATGACTGTCCCAAATAACTTGGCATTGCAAAAGCCGAACACCAGTGAGAACATTTCATGCTCGCATTCGATATCAACTTCTGCACAATCTTCAGAGAAACCGGATCATGCAAAGCCGCACCAACTTGTGCTTTTTGGCCAAACAATACAAGTCGACACTGGAAATGAGAATTCCGAGAAGAAAATGACTAATCATTTGTCTGATTTTCATCTACAAAGCCTGCCGACACGTACATCTGATGAGAGGTTCGAGTGGAATGCTAAGAACCAATGCGAAGAAACATTCGCAGGAGAAACATTAGAGATGAAACATTCAGGTAAGAATGAATAAAATTCAGTATCTTTCTACTAGAAATTGATTTATGATATATGATAATAACTTATTTGTCTCTCTTTCAGAGACTTCATCAGAAAAGCTAGGAGGTTGA
Protein sequence

>MS.gene007427.t1

MKEKRKGCNPTEMNMESNKKLKNVNKSVDPQLWHAVAGGMVQMPEVNSHVFYFPQGHAEHACEPVNFSAYSKIPSFIPCRVEAIRYMANHETDEVYAKLRLVPMNINQVSFDNDGVAGINVSEIKDKHQSFAKTLTQSDANNGGGFSCPRYCAETLFPRLDYSANPPLQDIFPKDVHGEKWHFRHVYRGTPKRHLLTTGWSPFVSDKKLASGDSIVFLRSENGDLHVGIRRAKRRNNVGVDPLLGWKSGSGIGICPAPPYGGFPSFSGEEDNKLRRNGKGNGLLISDGMMGRGKVKALEVIEAIKLGTNMQPFDVVYYPRSGTPEFLVKTSLIGTALQIRWCPGMRFKMAIETEDSSRISWFIGTIASVQAADPSWSDSMWRLLEVTWDEPEILKNVKRVNPWQVEIVSNMPSIPLSPFIPPRKKLRLPQLPDFPIDGQFPMPTFPNNLLNPNIPIFYLPETSPAGMQGARHGHFGLTLPDFHNLPLGLFQPSFQQPFNNNIATMPMTVPNNLALQKPNTSENISCSHSISTSAQSSEKPDHAKPHQLVLFGQTIQVDTGNENSEKKMTNHLSDFHLQSLPTRTSDERFEWNAKNQCEETFAGETLEMKHSETSSEKLGG