Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007428.t1 | KEH24016.1 | 90 | 359 | 32 | 2 | 1 | 356 | 48 | 405 | 4.10E-186 | 660.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007428.t1 | Q6K223 | 50.0 | 336 | 123 | 7 | 1 | 306 | 78 | 398 | 4.7e-82 | 306.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007428.t1 | A0A072U3R9 | 90.0 | 359 | 32 | 2 | 1 | 356 | 48 | 405 | 3.0e-186 | 660.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene007428.t1 | TF | B3-ARF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007428.t1 | MTR_7g101275 | 89.972 | 359 | 32 | 2 | 1 | 356 | 48 | 405 | 0.0 | 668 |
| MS.gene007428.t1 | MTR_0041s0120 | 83.288 | 371 | 46 | 3 | 1 | 356 | 48 | 417 | 0.0 | 630 |
| MS.gene007428.t1 | MTR_7g101280 | 76.066 | 305 | 24 | 1 | 1 | 256 | 87 | 391 | 5.96e-165 | 476 |
| MS.gene007428.t1 | MTR_7g101280 | 80.734 | 109 | 21 | 0 | 248 | 356 | 489 | 597 | 1.86e-52 | 184 |
| MS.gene007428.t1 | MTR_0041s0110 | 76.066 | 305 | 24 | 1 | 1 | 256 | 87 | 391 | 5.96e-165 | 476 |
| MS.gene007428.t1 | MTR_0041s0110 | 80.734 | 109 | 21 | 0 | 248 | 356 | 489 | 597 | 1.86e-52 | 184 |
| MS.gene007428.t1 | MTR_1g094960 | 53.061 | 294 | 100 | 2 | 1 | 256 | 74 | 367 | 1.70e-100 | 310 |
| MS.gene007428.t1 | MTR_1g064430 | 53.443 | 305 | 90 | 5 | 1 | 256 | 83 | 384 | 3.88e-99 | 308 |
| MS.gene007428.t1 | MTR_1g064430 | 53.443 | 305 | 90 | 5 | 1 | 256 | 96 | 397 | 4.53e-99 | 308 |
| MS.gene007428.t1 | MTR_2g094570 | 52.862 | 297 | 96 | 4 | 1 | 256 | 67 | 360 | 6.80e-99 | 306 |
| MS.gene007428.t1 | MTR_2g094570 | 52.862 | 297 | 96 | 4 | 1 | 256 | 67 | 360 | 8.55e-99 | 307 |
| MS.gene007428.t1 | MTR_2g094570 | 52.862 | 297 | 96 | 4 | 1 | 256 | 123 | 416 | 2.16e-98 | 308 |
| MS.gene007428.t1 | MTR_4g058930 | 51.815 | 303 | 98 | 5 | 1 | 256 | 66 | 367 | 3.28e-96 | 300 |
| MS.gene007428.t1 | MTR_4g058930 | 51.815 | 303 | 98 | 5 | 1 | 256 | 66 | 367 | 8.01e-96 | 300 |
| MS.gene007428.t1 | MTR_3g073420 | 43.729 | 295 | 122 | 8 | 1 | 256 | 76 | 365 | 4.15e-71 | 232 |
| MS.gene007428.t1 | MTR_1g024025 | 41.667 | 264 | 137 | 6 | 2 | 256 | 106 | 361 | 2.45e-57 | 201 |
| MS.gene007428.t1 | MTR_8g101360 | 44.141 | 256 | 131 | 6 | 2 | 250 | 94 | 344 | 2.23e-56 | 198 |
| MS.gene007428.t1 | MTR_4g124900 | 41.176 | 255 | 139 | 5 | 2 | 250 | 85 | 334 | 4.10e-55 | 194 |
| MS.gene007428.t1 | MTR_4g124900 | 41.176 | 255 | 139 | 5 | 2 | 250 | 85 | 334 | 4.27e-55 | 194 |
| MS.gene007428.t1 | MTR_2g043250 | 41.569 | 255 | 138 | 5 | 2 | 250 | 85 | 334 | 8.63e-55 | 194 |
| MS.gene007428.t1 | MTR_5g061220 | 39.085 | 284 | 124 | 7 | 1 | 250 | 78 | 346 | 7.08e-54 | 185 |
| MS.gene007428.t1 | MTR_2g014770 | 39.768 | 259 | 144 | 4 | 2 | 249 | 108 | 365 | 5.62e-53 | 184 |
| MS.gene007428.t1 | MTR_2g014770 | 39.768 | 259 | 144 | 4 | 2 | 249 | 108 | 365 | 1.60e-52 | 184 |
| MS.gene007428.t1 | MTR_2g024430 | 40.530 | 264 | 132 | 9 | 1 | 256 | 80 | 326 | 1.70e-52 | 181 |
| MS.gene007428.t1 | MTR_5g040880 | 39.416 | 274 | 135 | 9 | 1 | 264 | 70 | 322 | 9.25e-52 | 180 |
| MS.gene007428.t1 | MTR_2g018690 | 41.107 | 253 | 137 | 7 | 2 | 247 | 86 | 333 | 2.29e-51 | 183 |
| MS.gene007428.t1 | MTR_4g021580 | 35.474 | 327 | 186 | 7 | 1 | 322 | 80 | 386 | 1.01e-50 | 179 |
| MS.gene007428.t1 | MTR_2g093740 | 40.684 | 263 | 140 | 6 | 1 | 249 | 116 | 376 | 1.44e-50 | 179 |
| MS.gene007428.t1 | MTR_4g021580 | 35.474 | 327 | 186 | 7 | 1 | 322 | 80 | 386 | 1.72e-50 | 179 |
| MS.gene007428.t1 | MTR_5g076270 | 41.897 | 253 | 135 | 7 | 2 | 247 | 87 | 334 | 2.52e-50 | 180 |
| MS.gene007428.t1 | MTR_2g093740 | 40.684 | 263 | 140 | 6 | 1 | 249 | 116 | 376 | 3.47e-50 | 179 |
| MS.gene007428.t1 | MTR_2g093740 | 40.684 | 263 | 140 | 6 | 1 | 249 | 116 | 376 | 4.26e-50 | 179 |
| MS.gene007428.t1 | MTR_8g079492 | 39.764 | 254 | 139 | 7 | 2 | 247 | 3 | 250 | 4.79e-50 | 179 |
| MS.gene007428.t1 | MTR_8g079492 | 39.764 | 254 | 139 | 7 | 2 | 247 | 85 | 332 | 6.32e-50 | 179 |
| MS.gene007428.t1 | MTR_8g079492 | 39.764 | 254 | 139 | 7 | 2 | 247 | 85 | 332 | 6.55e-50 | 179 |
| MS.gene007428.t1 | MTR_8g100050 | 42.023 | 257 | 134 | 9 | 2 | 250 | 121 | 370 | 7.91e-50 | 177 |
| MS.gene007428.t1 | MTR_2g005240 | 39.615 | 260 | 147 | 5 | 2 | 256 | 85 | 339 | 1.31e-49 | 176 |
| MS.gene007428.t1 | MTR_3g064050 | 42.126 | 254 | 133 | 8 | 2 | 247 | 89 | 336 | 1.49e-49 | 178 |
| MS.gene007428.t1 | MTR_4g088210 | 38.346 | 266 | 142 | 6 | 2 | 249 | 94 | 355 | 1.58e-49 | 176 |
| MS.gene007428.t1 | MTR_4g088210 | 38.346 | 266 | 142 | 6 | 2 | 249 | 94 | 355 | 1.74e-49 | 176 |
| MS.gene007428.t1 | MTR_8g100050 | 42.023 | 257 | 134 | 9 | 2 | 250 | 121 | 370 | 1.89e-49 | 177 |
| MS.gene007428.t1 | MTR_5g040740 | 35.224 | 335 | 175 | 10 | 1 | 314 | 71 | 384 | 1.71e-48 | 168 |
| MS.gene007428.t1 | MTR_4g060460 | 40.230 | 261 | 144 | 4 | 1 | 249 | 114 | 374 | 2.44e-48 | 174 |
| MS.gene007428.t1 | MTR_4g060460 | 40.230 | 261 | 144 | 4 | 1 | 249 | 114 | 374 | 2.70e-48 | 174 |
| MS.gene007428.t1 | MTR_2g093740 | 38.768 | 276 | 140 | 7 | 1 | 249 | 116 | 389 | 4.07e-47 | 170 |
| MS.gene007428.t1 | MTR_2g093740 | 38.768 | 276 | 140 | 7 | 1 | 249 | 116 | 389 | 1.00e-46 | 169 |
| MS.gene007428.t1 | MTR_2g093740 | 38.768 | 276 | 140 | 7 | 1 | 249 | 116 | 389 | 1.11e-46 | 169 |
| MS.gene007428.t1 | MTR_7g062540 | 37.308 | 260 | 154 | 6 | 1 | 256 | 75 | 329 | 1.93e-46 | 168 |
| MS.gene007428.t1 | MTR_2g093740 | 44.550 | 211 | 109 | 4 | 45 | 249 | 38 | 246 | 2.06e-46 | 167 |
| MS.gene007428.t1 | MTR_8g027440 | 41.176 | 255 | 138 | 7 | 1 | 250 | 90 | 337 | 2.25e-46 | 167 |
| MS.gene007428.t1 | MTR_2g093740 | 44.550 | 211 | 109 | 4 | 45 | 249 | 38 | 246 | 2.34e-46 | 167 |
| MS.gene007428.t1 | MTR_1g058210 | 36.863 | 255 | 148 | 5 | 1 | 250 | 71 | 317 | 2.96e-46 | 164 |
| MS.gene007428.t1 | MTR_5g082140 | 39.147 | 258 | 136 | 7 | 1 | 250 | 71 | 315 | 7.67e-45 | 160 |
| MS.gene007428.t1 | MTR_2g006270 | 38.189 | 254 | 141 | 9 | 1 | 250 | 74 | 315 | 2.79e-43 | 155 |
| MS.gene007428.t1 | MTR_2g093740 | 41.964 | 224 | 109 | 5 | 45 | 249 | 38 | 259 | 5.82e-43 | 157 |
| MS.gene007428.t1 | MTR_2g093740 | 41.964 | 224 | 109 | 5 | 45 | 249 | 38 | 259 | 5.97e-43 | 158 |
| MS.gene007428.t1 | MTR_2g006380 | 37.008 | 254 | 139 | 11 | 1 | 250 | 81 | 317 | 1.63e-36 | 137 |
| MS.gene007428.t1 | MTR_8g446900 | 31.086 | 267 | 165 | 6 | 1 | 258 | 22 | 278 | 5.27e-33 | 126 |
| MS.gene007428.t1 | MTR_5g060780 | 31.274 | 259 | 144 | 9 | 6 | 250 | 76 | 314 | 6.65e-28 | 113 |
| MS.gene007428.t1 | MTR_5g460920 | 31.274 | 259 | 144 | 9 | 6 | 250 | 76 | 314 | 4.28e-27 | 110 |
| MS.gene007428.t1 | MTR_5g061890 | 28.947 | 304 | 170 | 11 | 6 | 283 | 76 | 359 | 1.27e-26 | 109 |
| MS.gene007428.t1 | MTR_5g062970 | 38.028 | 142 | 70 | 3 | 1 | 133 | 94 | 226 | 1.54e-24 | 100 |
| MS.gene007428.t1 | MTR_5g060630 | 29.655 | 290 | 165 | 10 | 1 | 256 | 71 | 355 | 5.62e-22 | 97.4 |
| MS.gene007428.t1 | MTR_5g460740 | 29.655 | 290 | 165 | 10 | 1 | 256 | 71 | 355 | 5.62e-22 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007428.t1 | AT2G28350 | 52.318 | 302 | 98 | 6 | 1 | 256 | 65 | 366 | 7.50e-95 | 296 |
| MS.gene007428.t1 | AT2G28350 | 52.318 | 302 | 98 | 6 | 1 | 256 | 65 | 366 | 1.34e-94 | 296 |
| MS.gene007428.t1 | AT4G30080 | 52.542 | 295 | 101 | 5 | 1 | 256 | 74 | 368 | 5.10e-94 | 294 |
| MS.gene007428.t1 | AT1G77850 | 40.000 | 290 | 140 | 3 | 1 | 256 | 73 | 362 | 3.56e-65 | 217 |
| MS.gene007428.t1 | AT1G77850 | 40.000 | 290 | 140 | 3 | 1 | 256 | 73 | 362 | 3.81e-65 | 217 |
| MS.gene007428.t1 | AT1G19850 | 41.573 | 267 | 140 | 6 | 2 | 259 | 117 | 376 | 5.25e-56 | 196 |
| MS.gene007428.t1 | AT1G19850 | 41.573 | 267 | 140 | 6 | 2 | 259 | 106 | 365 | 5.83e-56 | 196 |
| MS.gene007428.t1 | AT1G19220 | 42.353 | 255 | 136 | 5 | 2 | 250 | 85 | 334 | 5.61e-54 | 191 |
| MS.gene007428.t1 | AT5G20730 | 41.176 | 255 | 139 | 5 | 2 | 250 | 86 | 335 | 4.94e-53 | 189 |
| MS.gene007428.t1 | AT5G20730 | 41.406 | 256 | 138 | 6 | 2 | 250 | 86 | 336 | 3.39e-52 | 186 |
| MS.gene007428.t1 | AT5G37020 | 41.732 | 254 | 134 | 8 | 2 | 247 | 85 | 332 | 3.58e-52 | 184 |
| MS.gene007428.t1 | AT5G20730 | 41.406 | 256 | 138 | 6 | 2 | 250 | 86 | 336 | 5.02e-52 | 186 |
| MS.gene007428.t1 | AT5G37020 | 41.732 | 254 | 134 | 8 | 2 | 247 | 85 | 332 | 5.59e-52 | 184 |
| MS.gene007428.t1 | AT1G59750 | 42.471 | 259 | 141 | 6 | 2 | 256 | 84 | 338 | 2.09e-51 | 181 |
| MS.gene007428.t1 | AT1G59750 | 42.471 | 259 | 141 | 6 | 2 | 256 | 84 | 338 | 2.68e-51 | 181 |
| MS.gene007428.t1 | AT1G59750 | 42.471 | 259 | 141 | 6 | 2 | 256 | 84 | 338 | 2.75e-51 | 181 |
| MS.gene007428.t1 | AT1G59750 | 42.471 | 259 | 141 | 6 | 2 | 256 | 84 | 338 | 2.75e-51 | 181 |
| MS.gene007428.t1 | AT4G23980 | 39.768 | 259 | 146 | 6 | 2 | 256 | 75 | 327 | 1.66e-50 | 178 |
| MS.gene007428.t1 | AT4G23980 | 39.768 | 259 | 146 | 6 | 2 | 256 | 75 | 327 | 1.79e-50 | 178 |
| MS.gene007428.t1 | AT1G30330 | 41.667 | 252 | 137 | 7 | 2 | 247 | 86 | 333 | 4.46e-50 | 180 |
| MS.gene007428.t1 | AT1G30330 | 41.667 | 252 | 137 | 7 | 2 | 247 | 88 | 335 | 4.76e-50 | 180 |
| MS.gene007428.t1 | AT1G30330 | 41.667 | 252 | 137 | 7 | 2 | 247 | 88 | 335 | 4.76e-50 | 180 |
| MS.gene007428.t1 | AT5G60450 | 39.179 | 268 | 151 | 6 | 1 | 257 | 101 | 367 | 3.88e-49 | 176 |
| MS.gene007428.t1 | AT5G60450 | 39.179 | 268 | 151 | 6 | 1 | 257 | 125 | 391 | 4.80e-49 | 176 |
| MS.gene007428.t1 | AT5G37020 | 44.019 | 209 | 109 | 5 | 45 | 247 | 31 | 237 | 8.83e-49 | 175 |
| MS.gene007428.t1 | AT5G62000 | 40.234 | 256 | 140 | 8 | 2 | 250 | 123 | 372 | 1.39e-47 | 172 |
| MS.gene007428.t1 | AT5G62000 | 40.234 | 256 | 140 | 8 | 2 | 250 | 123 | 372 | 1.39e-47 | 172 |
| MS.gene007428.t1 | AT5G62000 | 40.234 | 256 | 140 | 8 | 2 | 250 | 123 | 372 | 1.39e-47 | 172 |
| MS.gene007428.t1 | AT5G62000 | 40.234 | 256 | 140 | 8 | 2 | 250 | 123 | 372 | 1.39e-47 | 172 |
| MS.gene007428.t1 | AT5G62000 | 40.000 | 255 | 142 | 7 | 2 | 250 | 123 | 372 | 1.54e-47 | 172 |
| MS.gene007428.t1 | AT2G46530 | 35.144 | 313 | 169 | 9 | 2 | 303 | 84 | 373 | 4.92e-47 | 168 |
| MS.gene007428.t1 | AT2G46530 | 35.144 | 313 | 169 | 9 | 2 | 303 | 105 | 394 | 5.35e-47 | 169 |
| MS.gene007428.t1 | AT3G61830 | 38.314 | 261 | 146 | 6 | 2 | 256 | 37 | 288 | 7.25e-47 | 167 |
| MS.gene007428.t1 | AT2G33860 | 37.548 | 261 | 147 | 6 | 2 | 249 | 109 | 366 | 1.76e-46 | 167 |
| MS.gene007428.t1 | AT3G61830 | 38.314 | 261 | 146 | 6 | 2 | 256 | 88 | 339 | 1.89e-46 | 167 |
| MS.gene007428.t1 | AT2G33860 | 40.191 | 209 | 120 | 3 | 45 | 249 | 2 | 209 | 2.25e-44 | 159 |
| MS.gene007428.t1 | AT2G46530 | 35.821 | 268 | 147 | 7 | 44 | 303 | 36 | 286 | 4.85e-43 | 156 |
| MS.gene007428.t1 | AT1G35520 | 38.710 | 248 | 140 | 6 | 6 | 250 | 93 | 331 | 4.04e-41 | 152 |
| MS.gene007428.t1 | AT1G35240 | 38.306 | 248 | 141 | 6 | 6 | 250 | 93 | 331 | 8.82e-41 | 151 |
| MS.gene007428.t1 | AT1G34310 | 37.903 | 248 | 142 | 5 | 6 | 250 | 93 | 331 | 1.29e-40 | 150 |
| MS.gene007428.t1 | AT1G34410 | 38.400 | 250 | 138 | 6 | 6 | 250 | 93 | 331 | 9.26e-40 | 148 |
| MS.gene007428.t1 | AT1G35540 | 37.903 | 248 | 142 | 6 | 6 | 250 | 93 | 331 | 9.94e-40 | 148 |
| MS.gene007428.t1 | AT1G34390 | 38.306 | 248 | 139 | 6 | 6 | 250 | 93 | 329 | 6.06e-39 | 146 |
| MS.gene007428.t1 | AT1G34170 | 34.241 | 257 | 149 | 7 | 2 | 250 | 87 | 331 | 6.57e-36 | 137 |
| MS.gene007428.t1 | AT1G34170 | 32.296 | 257 | 128 | 7 | 2 | 250 | 87 | 305 | 3.39e-30 | 120 |
| MS.gene007428.t1 | AT1G34170 | 32.296 | 257 | 128 | 7 | 2 | 250 | 87 | 305 | 7.73e-30 | 120 |
| MS.gene007428.t1 | AT1G43950 | 39.568 | 139 | 75 | 4 | 6 | 144 | 93 | 222 | 1.08e-21 | 92.4 |
| MS.gene007428.t1 | AT2G46870 | 34.211 | 114 | 69 | 2 | 37 | 145 | 27 | 139 | 1.11e-11 | 65.5 |
Find 77 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTATTCGCATTGGTTCTT+AGG | 0.221784 | 7.3:-11806117 | None:intergenic |
| CATCAACGTGTCTGAAATTA+AGG | 0.241218 | 7.3:+11803871 | MS.gene007428:CDS |
| GCATTTCAGGCATGTTTATA+GGG | 0.274751 | 7.3:+11804060 | MS.gene007428:CDS |
| TTTGTGAAAACTTCTTTAAT+TGG | 0.290026 | 7.3:+11804496 | MS.gene007428:CDS |
| GGCATTTCAGGCATGTTTAT+AGG | 0.293252 | 7.3:+11804059 | MS.gene007428:CDS |
| CAGTGTCAATTTGTATTGTT+TGG | 0.297437 | 7.3:-11805996 | None:intergenic |
| CGGAACTGTTGTTTCTGTTC+AGG | 0.298883 | 7.3:+11804606 | MS.gene007428:CDS |
| TCGAGGATACGTTGGTTTAT+CGG | 0.313865 | 7.3:+11804586 | MS.gene007428:CDS |
| ATGGTGAAAAGTGGCATTTC+AGG | 0.316984 | 7.3:+11804047 | MS.gene007428:CDS |
| AAATGTTATTAAACGGTTGT+TGG | 0.359013 | 7.3:-11805825 | None:intergenic |
| TTGGAATTCGGAGGGCTAAA+AGG | 0.363443 | 7.3:+11804197 | MS.gene007428:CDS |
| TTTGATAATGATGGTGTTGC+TGG | 0.376636 | 7.3:+11803848 | MS.gene007428:CDS |
| AGTGACAAGAAACTTGCTTC+TGG | 0.385156 | 7.3:+11804130 | MS.gene007428:CDS |
| CTAACTTGGTTAATATTCAT+AGG | 0.385591 | 7.3:-11803824 | None:intergenic |
| AAGAGGCATTTGTTGACAAC+TGG | 0.392584 | 7.3:+11804091 | MS.gene007428:CDS |
| AGTTTCTTGTCACTGACATA+TGG | 0.394738 | 7.3:-11804121 | None:intergenic |
| TACACAATCTTTAGAGAAAC+CGG | 0.394786 | 7.3:+11805939 | MS.gene007428:CDS |
| AGAAGTCTCCACAGAGAATC+AGG | 0.397029 | 7.3:-11804646 | None:intergenic |
| TTGGAATAGCACTTCAGATT+AGG | 0.401876 | 7.3:+11804515 | MS.gene007428:CDS |
| GTGAACTTAATGTTGGAATT+CGG | 0.402297 | 7.3:+11804185 | MS.gene007428:CDS |
| GCCATCTTGAACCTCATTCC+AGG | 0.409391 | 7.3:-11804544 | None:intergenic |
| TTAAACGGTTGTTGGAAACT+AGG | 0.416552 | 7.3:-11805817 | None:intergenic |
| ATTGTAGAAATGTTATTAAA+CGG | 0.422394 | 7.3:-11805832 | None:intergenic |
| GTGACAAGAAACTTGCTTCT+GGG | 0.423889 | 7.3:+11804131 | MS.gene007428:CDS |
| CTGCCAAAGTTTATTCGCAT+TGG | 0.435780 | 7.3:-11806125 | None:intergenic |
| TTCTCTGTGGAGACTTCTCC+AGG | 0.441260 | 7.3:+11804651 | MS.gene007428:CDS |
| CATCATTATCAAAACTAACT+TGG | 0.449861 | 7.3:-11803838 | None:intergenic |
| GTTGTCAACAAATGCCTCTT+CGG | 0.456311 | 7.3:-11804088 | None:intergenic |
| TGGTGCGGCTTTGCATGATC+CGG | 0.483206 | 7.3:-11805958 | None:intergenic |
| CGATGAGTCCTCAGTTTCAA+TGG | 0.489284 | 7.3:-11804566 | None:intergenic |
| GGATAATAAACCACATCAAA+CGG | 0.491751 | 7.3:-11804451 | None:intergenic |
| CTTCAGATTAGGTGGTGTCC+TGG | 0.494054 | 7.3:+11804526 | MS.gene007428:CDS |
| GAAAACAGTGAACTTAATGT+TGG | 0.494744 | 7.3:+11804178 | MS.gene007428:CDS |
| TTCAGGCTGCTGATCAGTCA+TGG | 0.498485 | 7.3:+11804623 | MS.gene007428:CDS |
| GTGGTTTATTATCCTCGGTC+GGG | 0.504235 | 7.3:+11804460 | MS.gene007428:CDS |
| TTGATGTGGTTTATTATCCT+CGG | 0.506306 | 7.3:+11804455 | MS.gene007428:CDS |
| GTTATTGAAGCAGCAAGACT+TGG | 0.509000 | 7.3:+11804415 | MS.gene007428:CDS |
| GAAACGTTCTCACTGGTGTT+CGG | 0.522985 | 7.3:-11805892 | None:intergenic |
| TTGTCTGATCTTCATCTACA+AGG | 0.524873 | 7.3:+11806054 | MS.gene007428:CDS |
| TTGGGATAGATGTCCTGAAA+AGG | 0.529804 | 7.3:-11804016 | None:intergenic |
| CATCAGAGGAATGTGTCGGC+AGG | 0.541446 | 7.3:-11806077 | None:intergenic |
| TGTGGTTTATTATCCTCGGT+CGG | 0.545089 | 7.3:+11804459 | MS.gene007428:CDS |
| TGACAAGAAACTTGCTTCTG+GGG | 0.545499 | 7.3:+11804132 | MS.gene007428:CDS |
| GCTAAAAGGCGAAATAATGT+TGG | 0.555377 | 7.3:+11804211 | MS.gene007428:CDS |
| CATTTCAGGCATGTTTATAG+GGG | 0.556177 | 7.3:+11804061 | MS.gene007428:CDS |
| AGCGTTTCGGCACAATATCT+AGG | 0.559188 | 7.3:-11803962 | None:intergenic |
| GGCATTTGTTGACAACTGGA+TGG | 0.569244 | 7.3:+11804095 | MS.gene007428:CDS |
| TTAGGTGGTGTCCTGGAATG+AGG | 0.569864 | 7.3:+11804533 | MS.gene007428:CDS |
| AACTTAATGTTGGAATTCGG+AGG | 0.572730 | 7.3:+11804188 | MS.gene007428:CDS |
| AGGATGTACATGGTGAAAAG+TGG | 0.579569 | 7.3:+11804038 | MS.gene007428:CDS |
| GAATAGCACTTCAGATTAGG+TGG | 0.583504 | 7.3:+11804518 | MS.gene007428:CDS |
| TAATATGCAGCCGTTTGATG+TGG | 0.585844 | 7.3:+11804441 | MS.gene007428:CDS |
| GAGTTATTAGTGAGAGTCAT+CGG | 0.590982 | 7.3:-11805856 | None:intergenic |
| TCTGATGCAAACACTGGTGG+TGG | 0.592766 | 7.3:+11803929 | MS.gene007428:CDS |
| ATCTATCCCAAGGATGTACA+TGG | 0.592936 | 7.3:+11804028 | MS.gene007428:CDS |
| CGAGCACGAAACGTTCTCAC+TGG | 0.593447 | 7.3:-11805899 | None:intergenic |
| GGATAGATGTCCTGAAAAGG+AGG | 0.594077 | 7.3:-11804013 | None:intergenic |
| CCACTCAAATCTCTCATCAG+AGG | 0.598580 | 7.3:-11806091 | None:intergenic |
| CTAATAACTCGGCATTGCAA+AGG | 0.603976 | 7.3:+11805869 | MS.gene007428:CDS |
| ATGAAGTGTATGCAAAACTC+AGG | 0.607388 | 7.3:+11803795 | MS.gene007428:CDS |
| TCCTGGAATGAGGTTCAAGA+TGG | 0.614384 | 7.3:+11804543 | MS.gene007428:CDS |
| TTTATAGGGGCACGCCGAAG+AGG | 0.616360 | 7.3:+11804074 | MS.gene007428:CDS |
| GTTTGCATCAGATTGTGTCA+AGG | 0.616878 | 7.3:-11803918 | None:intergenic |
| CTCTCATCAGAGGAATGTGT+CGG | 0.618324 | 7.3:-11806081 | None:intergenic |
| ACACAATCTGATGCAAACAC+TGG | 0.627018 | 7.3:+11803923 | MS.gene007428:CDS |
| ACTTAATGTTGGAATTCGGA+GGG | 0.629032 | 7.3:+11804189 | MS.gene007428:CDS |
| GATGACTCTCACTAATAACT+CGG | 0.629448 | 7.3:+11805858 | MS.gene007428:CDS |
| AGGACTCATCGAGGATACGT+TGG | 0.639611 | 7.3:+11804578 | MS.gene007428:CDS |
| CAAGATGGCCATTGAAACTG+AGG | 0.643200 | 7.3:+11804558 | MS.gene007428:CDS |
| AGTCATGGCCTGATTCTCTG+TGG | 0.672958 | 7.3:+11804638 | MS.gene007428:CDS |
| CAAACAATACAAATTGACAC+TGG | 0.679693 | 7.3:+11805997 | MS.gene007428:CDS |
| CCTCTGATGAGAGATTTGAG+TGG | 0.684336 | 7.3:+11806091 | MS.gene007428:CDS |
| AACTCAGGAGTACCCGACCG+AGG | 0.690896 | 7.3:-11804472 | None:intergenic |
| GATAGATGTCCTGAAAAGGA+GGG | 0.691897 | 7.3:-11804012 | None:intergenic |
| TTGAAACTGAGGACTCATCG+AGG | 0.724347 | 7.3:+11804569 | MS.gene007428:CDS |
| CAATCTGATGCAAACACTGG+TGG | 0.725224 | 7.3:+11803926 | MS.gene007428:CDS |
| TTAGCTGAATAGTCCAAACG+AGG | 0.756003 | 7.3:-11803989 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTAGAAATGTTATTAAA+CGG | - | chr7.3:11805835-11805854 | None:intergenic | 15.0% |
| !! | GAGATTAATAACATTAAATA+CGG | + | chr7.3:11804742-11804761 | MS.gene007428:intron | 15.0% |
| !! | TGCAATAATATTATAGAAAA+TGG | - | chr7.3:11805120-11805139 | None:intergenic | 15.0% |
| !!! | AAATGAAAATTTGGAATATT+AGG | - | chr7.3:11805700-11805719 | None:intergenic | 15.0% |
| !! | AAAAAAGTTGTCATATTTGA+CGG | - | chr7.3:11804978-11804997 | None:intergenic | 20.0% |
| !! | AAAAGGAAAAACTTCTTTAA+AGG | - | chr7.3:11805083-11805102 | None:intergenic | 20.0% |
| !! | AAAGGAAAAACTTCTTTAAA+GGG | - | chr7.3:11805082-11805101 | None:intergenic | 20.0% |
| !! | AAATTTATGAAAATCTGGTA+AGG | - | chr7.3:11805779-11805798 | None:intergenic | 20.0% |
| !! | AATGGAAATTTATGAAAATC+TGG | - | chr7.3:11805784-11805803 | None:intergenic | 20.0% |
| !! | TTTGTGAAAACTTCTTTAAT+TGG | + | chr7.3:11804496-11804515 | MS.gene007428:CDS | 20.0% |
| !!! | GATTTTCATAAATTTCCATT+AGG | + | chr7.3:11805784-11805803 | MS.gene007428:intron | 20.0% |
| ! | AAACTTCGAAGAAATAAGAA+AGG | + | chr7.3:11804334-11804353 | MS.gene007428:intron | 25.0% |
| ! | AAATGTTATTAAACGGTTGT+TGG | - | chr7.3:11805828-11805847 | None:intergenic | 25.0% |
| ! | ATAATAAACATGTCTATACC+TGG | - | chr7.3:11804672-11804691 | None:intergenic | 25.0% |
| ! | CATCATTATCAAAACTAACT+TGG | - | chr7.3:11803841-11803860 | None:intergenic | 25.0% |
| ! | CATCCAAGTTAAATATGTTA+AGG | - | chr7.3:11805273-11805292 | None:intergenic | 25.0% |
| ! | CTAACTTGGTTAATATTCAT+AGG | - | chr7.3:11803827-11803846 | None:intergenic | 25.0% |
| ! | GTTGATGTGAATATTGTTTA+TGG | + | chr7.3:11805309-11805328 | MS.gene007428:intron | 25.0% |
| ! | TATGATGTATTACTGAGAAA+TGG | + | chr7.3:11805033-11805052 | MS.gene007428:intron | 25.0% |
| ! | TCTCGCAAATTAATTCTAAA+GGG | - | chr7.3:11804700-11804719 | None:intergenic | 25.0% |
| ! | TTCTCGCAAATTAATTCTAA+AGG | - | chr7.3:11804701-11804720 | None:intergenic | 25.0% |
| !! | AAATTTGGAATATTAGGACT+TGG | - | chr7.3:11805694-11805713 | None:intergenic | 25.0% |
| !! | CGGTGAAGTTATTTATATTT+TGG | + | chr7.3:11804762-11804781 | MS.gene007428:intron | 25.0% |
| !! | TTTTAATCAGTACCATACAT+TGG | + | chr7.3:11805174-11805193 | MS.gene007428:intron | 25.0% |
| !! | TTTTACCAAATTCTCATGTT+AGG | - | chr7.3:11805206-11805225 | None:intergenic | 25.0% |
| !!! | ATGATTAGTCATTTTCTTCT+CGG | - | chr7.3:11806034-11806053 | None:intergenic | 25.0% |
| !!! | CAAGTTAGTTTTGATAATGA+TGG | + | chr7.3:11803839-11803858 | MS.gene007428:CDS | 25.0% |
| !!! | TTCACATTTTTAAGTAACTC+AGG | - | chr7.3:11805517-11805536 | None:intergenic | 25.0% |
| CAAACAATACAAATTGACAC+TGG | + | chr7.3:11805997-11806016 | MS.gene007428:CDS | 30.0% | |
| CAGTGTCAATTTGTATTGTT+TGG | - | chr7.3:11805999-11806018 | None:intergenic | 30.0% | |
| CGAAGAAATAAGAAAGGAAA+TGG | + | chr7.3:11804340-11804359 | MS.gene007428:intron | 30.0% | |
| GAAAACAGTGAACTTAATGT+TGG | + | chr7.3:11804178-11804197 | MS.gene007428:CDS | 30.0% | |
| GGATAATAAACCACATCAAA+CGG | - | chr7.3:11804454-11804473 | None:intergenic | 30.0% | |
| GTGAACTTAATGTTGGAATT+CGG | + | chr7.3:11804185-11804204 | MS.gene007428:CDS | 30.0% | |
| TACAAAATGTCATCAAAGAG+TGG | + | chr7.3:11804866-11804885 | MS.gene007428:intron | 30.0% | |
| TAGTACTAACGAATTTCACA+AGG | + | chr7.3:11805398-11805417 | MS.gene007428:intron | 30.0% | |
| TTGATGTGGTTTATTATCCT+CGG | + | chr7.3:11804455-11804474 | MS.gene007428:CDS | 30.0% | |
| ! | GAAAAGTTGGCATTGAAAAT+TGG | - | chr7.3:11805660-11805679 | None:intergenic | 30.0% |
| ! | GAAGTTTTCACAAAAAACTC+AGG | - | chr7.3:11804490-11804509 | None:intergenic | 30.0% |
| ! | GTTTCGGGTAAATGAAAATT+TGG | - | chr7.3:11805709-11805728 | None:intergenic | 30.0% |
| ! | TACACAATCTTTAGAGAAAC+CGG | + | chr7.3:11805939-11805958 | MS.gene007428:CDS | 30.0% |
| !! | AATGGATTACTAATAAGCGA+TGG | + | chr7.3:11804358-11804377 | MS.gene007428:intron | 30.0% |
| !! | CTTCTGATATCATGCTTTTT+AGG | + | chr7.3:11805477-11805496 | MS.gene007428:intron | 30.0% |
| AAAGCTATAGCACTATTGCA+TGG | + | chr7.3:11804896-11804915 | MS.gene007428:intron | 35.0% | |
| AACTTAATGTTGGAATTCGG+AGG | + | chr7.3:11804188-11804207 | MS.gene007428:CDS | 35.0% | |
| ACTAATAAGCGATGGAATGA+TGG | + | chr7.3:11804366-11804385 | MS.gene007428:intron | 35.0% | |
| ACTTAATGTTGGAATTCGGA+GGG | + | chr7.3:11804189-11804208 | MS.gene007428:CDS | 35.0% | |
| AGCTTCCTAACATGAGAATT+TGG | + | chr7.3:11805198-11805217 | MS.gene007428:intron | 35.0% | |
| AGTTTCTTGTCACTGACATA+TGG | - | chr7.3:11804124-11804143 | None:intergenic | 35.0% | |
| ATGAAGTGTATGCAAAACTC+AGG | + | chr7.3:11803795-11803814 | MS.gene007428:CDS | 35.0% | |
| ATTGAAAATTGGCTGTCAAG+TGG | - | chr7.3:11805649-11805668 | None:intergenic | 35.0% | |
| CATTTCAGGCATGTTTATAG+GGG | + | chr7.3:11804061-11804080 | MS.gene007428:CDS | 35.0% | |
| CTAATAAGCGATGGAATGAT+GGG | + | chr7.3:11804367-11804386 | MS.gene007428:intron | 35.0% | |
| GAGTTATTAGTGAGAGTCAT+CGG | - | chr7.3:11805859-11805878 | None:intergenic | 35.0% | |
| GATGACTCTCACTAATAACT+CGG | + | chr7.3:11805858-11805877 | MS.gene007428:CDS | 35.0% | |
| GATGTATTACTGAGAAATGG+TGG | + | chr7.3:11805036-11805055 | MS.gene007428:intron | 35.0% | |
| GCATTTCAGGCATGTTTATA+GGG | + | chr7.3:11804060-11804079 | MS.gene007428:CDS | 35.0% | |
| GCTAAAAGGCGAAATAATGT+TGG | + | chr7.3:11804211-11804230 | MS.gene007428:CDS | 35.0% | |
| GGGCCTTAACATATTTAACT+TGG | + | chr7.3:11805267-11805286 | MS.gene007428:intron | 35.0% | |
| TAAATATGTTAAGGCCCTGA+GGG | - | chr7.3:11805264-11805283 | None:intergenic | 35.0% | |
| TCTTCATTATGTATCCCTCA+GGG | + | chr7.3:11805247-11805266 | MS.gene007428:intron | 35.0% | |
| TGGAGCTACATCATACAAAA+AGG | - | chr7.3:11805100-11805119 | None:intergenic | 35.0% | |
| TTAAACGGTTGTTGGAAACT+AGG | - | chr7.3:11805820-11805839 | None:intergenic | 35.0% | |
| TTAAATATGTTAAGGCCCTG+AGG | - | chr7.3:11805265-11805284 | None:intergenic | 35.0% | |
| TTCTTCATTATGTATCCCTC+AGG | + | chr7.3:11805246-11805265 | MS.gene007428:intron | 35.0% | |
| TTGAAAATTGGCTGTCAAGT+GGG | - | chr7.3:11805648-11805667 | None:intergenic | 35.0% | |
| TTGGAATAGCACTTCAGATT+AGG | + | chr7.3:11804515-11804534 | MS.gene007428:CDS | 35.0% | |
| TTGGAATATTAGGACTTGGA+AGG | - | chr7.3:11805690-11805709 | None:intergenic | 35.0% | |
| TTGTCTGATCTTCATCTACA+AGG | + | chr7.3:11806054-11806073 | MS.gene007428:CDS | 35.0% | |
| ! | CATCAACGTGTCTGAAATTA+AGG | + | chr7.3:11803871-11803890 | MS.gene007428:CDS | 35.0% |
| ! | GAGTTTTGCATACACTTCAT+CGG | - | chr7.3:11803795-11803814 | None:intergenic | 35.0% |
| ! | TTTTCACCATGTACATCCTT+GGG | - | chr7.3:11804037-11804056 | None:intergenic | 35.0% |
| !! | AACTTGAAAGCATTCTGATC+TGG | - | chr7.3:11805156-11805175 | None:intergenic | 35.0% |
| !! | TGGAAATTTGGTAGTGGAAT+TGG | + | chr7.3:11804253-11804272 | MS.gene007428:intron | 35.0% |
| !! | TTTGATAATGATGGTGTTGC+TGG | + | chr7.3:11803848-11803867 | MS.gene007428:CDS | 35.0% |
| AACTATGGAAATCCTCCGTA+AGG | - | chr7.3:11804295-11804314 | None:intergenic | 40.0% | |
| AATACCAAAATGACCATGCC+TGG | - | chr7.3:11805755-11805774 | None:intergenic | 40.0% | |
| AATCTCAATTTCGTCCTTGG+CGG | - | chr7.3:11805607-11805626 | None:intergenic | 40.0% | |
| ACACAATCTGATGCAAACAC+TGG | + | chr7.3:11803923-11803942 | MS.gene007428:CDS | 40.0% | |
| AGGATGTACATGGTGAAAAG+TGG | + | chr7.3:11804038-11804057 | MS.gene007428:CDS | 40.0% | |
| ATCTATCCCAAGGATGTACA+TGG | + | chr7.3:11804028-11804047 | MS.gene007428:CDS | 40.0% | |
| ATGGTGAAAAGTGGCATTTC+AGG | + | chr7.3:11804047-11804066 | MS.gene007428:CDS | 40.0% | |
| ATGTGAAAAGAGTGAATCCG+TGG | + | chr7.3:11805530-11805549 | MS.gene007428:intron | 40.0% | |
| CTAATAACTCGGCATTGCAA+AGG | + | chr7.3:11805869-11805888 | MS.gene007428:CDS | 40.0% | |
| CTAGGCTGAAATAGACCTAA+TGG | - | chr7.3:11805802-11805821 | None:intergenic | 40.0% | |
| GAATAGCACTTCAGATTAGG+TGG | + | chr7.3:11804518-11804537 | MS.gene007428:CDS | 40.0% | |
| GATACTCTTTCAACTTGCCA+CGG | - | chr7.3:11805550-11805569 | None:intergenic | 40.0% | |
| GATAGATGTCCTGAAAAGGA+GGG | - | chr7.3:11804015-11804034 | None:intergenic | 40.0% | |
| GGAAGGTTGTTTGGAAAAGT+TGG | - | chr7.3:11805673-11805692 | None:intergenic | 40.0% | |
| GGCATTTCAGGCATGTTTAT+AGG | + | chr7.3:11804059-11804078 | MS.gene007428:CDS | 40.0% | |
| GGTAATCTCAATTTCGTCCT+TGG | - | chr7.3:11805610-11805629 | None:intergenic | 40.0% | |
| GTTATTGAAGCAGCAAGACT+TGG | + | chr7.3:11804415-11804434 | MS.gene007428:CDS | 40.0% | |
| GTTGTCAACAAATGCCTCTT+CGG | - | chr7.3:11804091-11804110 | None:intergenic | 40.0% | |
| GTTTGCATCAGATTGTGTCA+AGG | - | chr7.3:11803921-11803940 | None:intergenic | 40.0% | |
| TAATATGCAGCCGTTTGATG+TGG | + | chr7.3:11804441-11804460 | MS.gene007428:CDS | 40.0% | |
| TGTCAATCTCAGATCGCAAA+AGG | - | chr7.3:11804943-11804962 | None:intergenic | 40.0% | |
| TGTGGTTTATTATCCTCGGT+CGG | + | chr7.3:11804459-11804478 | MS.gene007428:CDS | 40.0% | |
| TTAGCTGAATAGTCCAAACG+AGG | - | chr7.3:11803992-11804011 | None:intergenic | 40.0% | |
| TTAGGACTTGGAAGGTTGTT+TGG | - | chr7.3:11805682-11805701 | None:intergenic | 40.0% | |
| TTGGAGTCAATCCTTTGTCA+GGG | + | chr7.3:11804230-11804249 | MS.gene007428:intron | 40.0% | |
| TTGGGATAGATGTCCTGAAA+AGG | - | chr7.3:11804019-11804038 | None:intergenic | 40.0% | |
| ! | AGTGACAAGAAACTTGCTTC+TGG | + | chr7.3:11804130-11804149 | MS.gene007428:CDS | 40.0% |
| ! | CGGAGGATTTCCATAGTTTT+CGG | + | chr7.3:11804297-11804316 | MS.gene007428:intron | 40.0% |
| ! | CTTTTCACCATGTACATCCT+TGG | - | chr7.3:11804038-11804057 | None:intergenic | 40.0% |
| ! | GGAGGATTTCCATAGTTTTC+GGG | + | chr7.3:11804298-11804317 | MS.gene007428:intron | 40.0% |
| ! | GTCATATTTGACGGACCAAA+CGG | - | chr7.3:11804969-11804988 | None:intergenic | 40.0% |
| ! | GTGACAAGAAACTTGCTTCT+GGG | + | chr7.3:11804131-11804150 | MS.gene007428:CDS | 40.0% |
| ! | TGACAAGAAACTTGCTTCTG+GGG | + | chr7.3:11804132-11804151 | MS.gene007428:CDS | 40.0% |
| ! | TGGTGTGTTTTCATTCTGCT+GGG | + | chr7.3:11805056-11805075 | MS.gene007428:intron | 40.0% |
| !! | AAGAGGCATTTGTTGACAAC+TGG | + | chr7.3:11804091-11804110 | MS.gene007428:CDS | 40.0% |
| !! | ATTTCCATAGTTTTCGGGAG+AGG | + | chr7.3:11804303-11804322 | MS.gene007428:intron | 40.0% |
| !! | CAAACGAGGAAAAAGCGTTT+CGG | - | chr7.3:11803978-11803997 | None:intergenic | 40.0% |
| !! | TCGAGGATACGTTGGTTTAT+CGG | + | chr7.3:11804586-11804605 | MS.gene007428:CDS | 40.0% |
| !! | TTTTCAGGACATCTATCCCA+AGG | + | chr7.3:11804018-11804037 | MS.gene007428:CDS | 40.0% |
| AGAAGTCTCCACAGAGAATC+AGG | - | chr7.3:11804649-11804668 | None:intergenic | 45.0% | |
| AGCGTTTCGGCACAATATCT+AGG | - | chr7.3:11803965-11803984 | None:intergenic | 45.0% | |
| AGTGGGAAATTTGGGAGTTG+AGG | - | chr7.3:11805631-11805650 | None:intergenic | 45.0% | |
| ATTTGTCCTGCACCACCTTA+CGG | + | chr7.3:11804277-11804296 | MS.gene007428:intron | 45.0% | |
| CAAGATGGCCATTGAAACTG+AGG | + | chr7.3:11804558-11804577 | MS.gene007428:CDS | 45.0% | |
| CAATCTGATGCAAACACTGG+TGG | + | chr7.3:11803926-11803945 | MS.gene007428:CDS | 45.0% | |
| CCAAATTTCCACCCTGACAA+AGG | - | chr7.3:11804244-11804263 | None:intergenic | 45.0% | |
| CCACTCAAATCTCTCATCAG+AGG | - | chr7.3:11806094-11806113 | None:intergenic | 45.0% | |
| CCTCTGATGAGAGATTTGAG+TGG | + | chr7.3:11806091-11806110 | MS.gene007428:CDS | 45.0% | |
| CCTTTGTCAGGGTGGAAATT+TGG | + | chr7.3:11804241-11804260 | MS.gene007428:intron | 45.0% | |
| CGATGAGTCCTCAGTTTCAA+TGG | - | chr7.3:11804569-11804588 | None:intergenic | 45.0% | |
| CTCTCATCAGAGGAATGTGT+CGG | - | chr7.3:11806084-11806103 | None:intergenic | 45.0% | |
| CTGAGATTGACAACACCGTT+TGG | + | chr7.3:11804951-11804970 | MS.gene007428:intron | 45.0% | |
| CTGTCAAATAGCGGCTATAG+TGG | + | chr7.3:11804791-11804810 | MS.gene007428:intron | 45.0% | |
| GAAACGTTCTCACTGGTGTT+CGG | - | chr7.3:11805895-11805914 | None:intergenic | 45.0% | |
| GCTATGGTTCTCTGGTATAG+TGG | + | chr7.3:11804815-11804834 | MS.gene007428:intron | 45.0% | |
| GGATAGATGTCCTGAAAAGG+AGG | - | chr7.3:11804016-11804035 | None:intergenic | 45.0% | |
| GGCTGTCAAGTGGGAAATTT+GGG | - | chr7.3:11805639-11805658 | None:intergenic | 45.0% | |
| GTGGTTTATTATCCTCGGTC+GGG | + | chr7.3:11804460-11804479 | MS.gene007428:CDS | 45.0% | |
| GTTAGGAAGCTGCCAATGTA+TGG | - | chr7.3:11805189-11805208 | None:intergenic | 45.0% | |
| GTTGGAGTCAATCCTTTGTC+AGG | + | chr7.3:11804229-11804248 | MS.gene007428:intron | 45.0% | |
| TATGGAAATCCTCCGTAAGG+TGG | - | chr7.3:11804292-11804311 | None:intergenic | 45.0% | |
| TCAGGGTGGAAATTTGGTAG+TGG | + | chr7.3:11804247-11804266 | MS.gene007428:intron | 45.0% | |
| TCCTGGAATGAGGTTCAAGA+TGG | + | chr7.3:11804543-11804562 | MS.gene007428:CDS | 45.0% | |
| TCTTCCTCTCCCGAAAACTA+TGG | - | chr7.3:11804310-11804329 | None:intergenic | 45.0% | |
| TGGCTGTCAAGTGGGAAATT+TGG | - | chr7.3:11805640-11805659 | None:intergenic | 45.0% | |
| TGGTCAACGCTGTCAAATAG+CGG | + | chr7.3:11804782-11804801 | MS.gene007428:intron | 45.0% | |
| TTGAAACTGAGGACTCATCG+AGG | + | chr7.3:11804569-11804588 | MS.gene007428:CDS | 45.0% | |
| TTGGAATTCGGAGGGCTAAA+AGG | + | chr7.3:11804197-11804216 | MS.gene007428:CDS | 45.0% | |
| ! | GGCATTTGTTGACAACTGGA+TGG | + | chr7.3:11804095-11804114 | MS.gene007428:CDS | 45.0% |
| ! | GTGGTGTGTTTTCATTCTGC+TGG | + | chr7.3:11805055-11805074 | MS.gene007428:intron | 45.0% |
| ! | TTCAGCTAACCCTCCTTTTC+AGG | + | chr7.3:11804003-11804022 | MS.gene007428:CDS | 45.0% |
| !! | AAGCGATGGAATGATGGGTA+GGG | + | chr7.3:11804372-11804391 | MS.gene007428:intron | 45.0% |
| !! | ATAGTGGTGCTATGGTTCTC+TGG | + | chr7.3:11804807-11804826 | MS.gene007428:intron | 45.0% |
| !! | CGGAACTGTTGTTTCTGTTC+AGG | + | chr7.3:11804606-11804625 | MS.gene007428:CDS | 45.0% |
| !! | TAAGCGATGGAATGATGGGT+AGG | + | chr7.3:11804371-11804390 | MS.gene007428:intron | 45.0% |
| !!! | CGAAACGCTTTTTCCTCGTT+TGG | + | chr7.3:11803976-11803995 | MS.gene007428:CDS | 45.0% |
| AAAGGGGAAAGAGGGATCGA+AGG | - | chr7.3:11805580-11805599 | None:intergenic | 50.0% | |
| AGGACTCATCGAGGATACGT+TGG | + | chr7.3:11804578-11804597 | MS.gene007428:CDS | 50.0% | |
| AGTCATGGCCTGATTCTCTG+TGG | + | chr7.3:11804638-11804657 | MS.gene007428:CDS | 50.0% | |
| CATGCCAGCAGGAGTTGTTT+CGG | - | chr7.3:11805725-11805744 | None:intergenic | 50.0% | |
| CTTCAGATTAGGTGGTGTCC+TGG | + | chr7.3:11804526-11804545 | MS.gene007428:CDS | 50.0% | |
| GAGTCAATCCTTTGTCAGGG+TGG | + | chr7.3:11804233-11804252 | MS.gene007428:intron | 50.0% | |
| GCCATCTTGAACCTCATTCC+AGG | - | chr7.3:11804547-11804566 | None:intergenic | 50.0% | |
| GCGGTATGAAAGGGGAAAGA+GGG | - | chr7.3:11805588-11805607 | None:intergenic | 50.0% | |
| TCGTCCTTGGCGGTATGAAA+GGG | - | chr7.3:11805597-11805616 | None:intergenic | 50.0% | |
| TCTGATGCAAACACTGGTGG+TGG | + | chr7.3:11803929-11803948 | MS.gene007428:CDS | 50.0% | |
| TTACCCGAAACAACTCCTGC+TGG | + | chr7.3:11805718-11805737 | MS.gene007428:intron | 50.0% | |
| TTAGGTGGTGTCCTGGAATG+AGG | + | chr7.3:11804533-11804552 | MS.gene007428:CDS | 50.0% | |
| TTCAGGCTGCTGATCAGTCA+TGG | + | chr7.3:11804623-11804642 | MS.gene007428:CDS | 50.0% | |
| TTCGTCCTTGGCGGTATGAA+AGG | - | chr7.3:11805598-11805617 | None:intergenic | 50.0% | |
| TTCTCTGTGGAGACTTCTCC+AGG | + | chr7.3:11804651-11804670 | MS.gene007428:CDS | 50.0% | |
| TTTCCCCTTTCATACCGCCA+AGG | + | chr7.3:11805590-11805609 | MS.gene007428:intron | 50.0% | |
| ! | ATGCCAGCAGGAGTTGTTTC+GGG | - | chr7.3:11805724-11805743 | None:intergenic | 50.0% |
| ! | TAGCGGCTATAGTGGTGCTA+TGG | + | chr7.3:11804799-11804818 | MS.gene007428:intron | 50.0% |
| ! | TTTGGCCAAAAAGCACGAGC+TGG | - | chr7.3:11805981-11806000 | None:intergenic | 50.0% |
| !! | AGCGATGGAATGATGGGTAG+GGG | + | chr7.3:11804373-11804392 | MS.gene007428:intron | 50.0% |
| AACAACTCCTGCTGGCATGC+AGG | + | chr7.3:11805726-11805745 | MS.gene007428:intron | 55.0% | |
| AATCCTCCGTAAGGTGGTGC+AGG | - | chr7.3:11804286-11804305 | None:intergenic | 55.0% | |
| ACAACTCCTGCTGGCATGCA+GGG | + | chr7.3:11805727-11805746 | MS.gene007428:intron | 55.0% | |
| CGAGCACGAAACGTTCTCAC+TGG | - | chr7.3:11805902-11805921 | None:intergenic | 55.0% | |
| CGTCCTTGGCGGTATGAAAG+GGG | - | chr7.3:11805596-11805615 | None:intergenic | 55.0% | |
| GGCGGTATGAAAGGGGAAAG+AGG | - | chr7.3:11805589-11805608 | None:intergenic | 55.0% | |
| TGGTGCGGCTTTGCATGATC+CGG | - | chr7.3:11805961-11805980 | None:intergenic | 55.0% | |
| ! | CATCAGAGGAATGTGTCGGC+AGG | - | chr7.3:11806080-11806099 | None:intergenic | 55.0% |
| ! | CCAAAAAGCACGAGCTGGTG+CGG | - | chr7.3:11805976-11805995 | None:intergenic | 55.0% |
| ! | GGAGCCAGGCATGGTCATTT+TGG | + | chr7.3:11805748-11805767 | MS.gene007428:intron | 55.0% |
| ! | TTTATAGGGGCACGCCGAAG+AGG | + | chr7.3:11804074-11804093 | MS.gene007428:CDS | 55.0% |
| !! | GCGATGGAATGATGGGTAGG+GGG | + | chr7.3:11804374-11804393 | MS.gene007428:intron | 55.0% |
| !! | TGGAATGATGGGTAGGGGGA+AGG | + | chr7.3:11804378-11804397 | MS.gene007428:intron | 55.0% |
| ATGGGTAGGGGGAAGGCGAA+AGG | + | chr7.3:11804385-11804404 | MS.gene007428:intron | 60.0% | |
| TGTCCTGCACCACCTTACGG+AGG | + | chr7.3:11804280-11804299 | MS.gene007428:intron | 60.0% | |
| ! | CCGCACCAGCTCGTGCTTTT+TGG | + | chr7.3:11805973-11805992 | MS.gene007428:CDS | 60.0% |
| !! | AACTCAGGAGTACCCGACCG+AGG | - | chr7.3:11804475-11804494 | None:intergenic | 60.0% |
| CTGCTGGCATGCAGGGAGCC+AGG | + | chr7.3:11805734-11805753 | MS.gene007428:intron | 70.0% | |
| CTGGCTCCCTGCATGCCAGC+AGG | - | chr7.3:11805736-11805755 | None:intergenic | 70.0% | |
| GGCATGCAGGGAGCCAGGCA+TGG | + | chr7.3:11805739-11805758 | MS.gene007428:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 11803776 | 11806137 | 11803776 | ID=MS.gene007428 |
| chr7.3 | mRNA | 11803776 | 11806137 | 11803776 | ID=MS.gene007428.t1;Parent=MS.gene007428 |
| chr7.3 | exon | 11803776 | 11804245 | 11803776 | ID=MS.gene007428.t1.exon1;Parent=MS.gene007428.t1 |
| chr7.3 | CDS | 11803776 | 11804245 | 11803776 | ID=cds.MS.gene007428.t1;Parent=MS.gene007428.t1 |
| chr7.3 | exon | 11804393 | 11804672 | 11804393 | ID=MS.gene007428.t1.exon2;Parent=MS.gene007428.t1 |
| chr7.3 | CDS | 11804393 | 11804672 | 11804393 | ID=cds.MS.gene007428.t1;Parent=MS.gene007428.t1 |
| chr7.3 | exon | 11805817 | 11806137 | 11805817 | ID=MS.gene007428.t1.exon3;Parent=MS.gene007428.t1 |
| chr7.3 | CDS | 11805817 | 11806137 | 11805817 | ID=cds.MS.gene007428.t1;Parent=MS.gene007428.t1 |
| Gene Sequence |
| Protein sequence |