AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007441

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007441.t1 MTR_2g099990 63.251 283 84 4 33 302 45 320 1.47e-118 353
MS.gene007441.t1 MTR_4g059870 73.756 221 45 6 7 218 6 222 4.74e-115 345
MS.gene007441.t1 MTR_8g017210 57.402 331 102 8 27 329 55 374 4.14e-114 343
MS.gene007441.t1 MTR_1g094115 87.500 168 20 1 34 200 47 214 4.91e-112 338
MS.gene007441.t1 MTR_1g016010 62.191 283 84 9 30 308 38 301 8.14e-109 327
MS.gene007441.t1 MTR_1g112270 86.875 160 21 0 37 196 47 206 5.81e-108 329
MS.gene007441.t1 MTR_2g093960 62.403 258 74 8 34 283 32 274 7.08e-105 316
MS.gene007441.t1 MTR_1g112270 81.287 171 21 1 37 196 47 217 2.52e-104 320
MS.gene007441.t1 MTR_2g090745 45.610 410 148 10 42 380 15 420 5.09e-103 312
MS.gene007441.t1 MTR_2g099990 61.240 258 80 4 58 302 1 251 1.78e-101 307
MS.gene007441.t1 MTR_1g094115 76.786 168 21 2 34 200 47 197 8.08e-94 291
MS.gene007441.t1 MTR_2g017720 77.391 115 21 1 44 158 323 432 3.23e-56 191
MS.gene007441.t1 MTR_3g102000 67.677 99 25 2 61 155 36 131 1.23e-38 139
MS.gene007441.t1 MTR_5g030560 86.667 45 6 0 44 88 16 60 2.52e-22 90.5
MS.gene007441.t1 MTR_1g093095 34.503 171 95 5 28 186 84 249 4.25e-21 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007441.t1 AT5G03150 61.489 309 71 9 3 283 4 292 1.23e-117 352
MS.gene007441.t1 AT5G03150 42.143 140 41 9 285 388 367 502 7.43e-11 64.3
MS.gene007441.t1 AT3G50700 85.549 173 25 0 24 196 24 196 1.83e-113 339
MS.gene007441.t1 AT5G66730 75.728 206 43 2 11 209 8 213 1.41e-111 336
MS.gene007441.t1 AT1G55110 62.799 293 84 8 30 306 58 341 1.69e-111 335
MS.gene007441.t1 AT1G55110 62.799 293 84 8 30 306 58 341 1.69e-111 335
MS.gene007441.t1 AT1G55110 62.799 293 84 8 30 306 58 341 1.69e-111 335
MS.gene007441.t1 AT5G44160 52.676 355 109 8 28 329 32 380 4.65e-111 334
MS.gene007441.t1 AT3G45260 84.181 177 23 2 33 204 38 214 1.39e-108 327
MS.gene007441.t1 AT3G45260 84.181 177 23 2 33 204 38 214 1.39e-108 327
MS.gene007441.t1 AT1G03840 78.610 187 38 2 28 213 36 221 1.52e-108 328
MS.gene007441.t1 AT3G13810 86.826 167 21 1 31 196 48 214 3.84e-106 322
MS.gene007441.t1 AT3G13810 86.826 167 21 1 31 196 67 233 3.99e-106 323
MS.gene007441.t1 AT3G13810 86.826 167 21 1 31 196 67 233 3.99e-106 323
MS.gene007441.t1 AT3G13810 86.826 167 21 1 31 196 62 228 4.01e-106 323
MS.gene007441.t1 AT1G14580 82.738 168 26 1 29 196 51 215 5.23e-106 321
MS.gene007441.t1 AT1G14580 82.738 168 26 1 29 196 51 215 5.23e-106 321
MS.gene007441.t1 AT2G02070 83.529 170 26 1 34 203 52 219 6.21e-106 325
MS.gene007441.t1 AT2G02070 83.529 170 26 1 34 203 52 219 6.21e-106 325
MS.gene007441.t1 AT1G14580 82.738 168 26 1 29 196 65 229 6.61e-106 321
MS.gene007441.t1 AT1G03840 77.540 187 38 3 28 213 36 219 6.94e-105 319
MS.gene007441.t1 AT2G02080 70.647 201 46 3 7 197 20 217 9.41e-105 319
MS.gene007441.t1 AT2G02080 70.647 201 46 3 7 197 20 217 9.41e-105 319
MS.gene007441.t1 AT2G02080 70.647 201 46 3 7 197 20 217 9.41e-105 319
MS.gene007441.t1 AT2G02080 70.647 201 46 3 7 197 20 217 9.41e-105 319
MS.gene007441.t1 AT4G02670 81.714 175 31 1 34 207 53 227 1.05e-104 315
MS.gene007441.t1 AT4G02670 81.714 175 31 1 34 207 55 229 1.26e-104 315
MS.gene007441.t1 AT5G60470 75.521 192 38 3 21 203 24 215 4.12e-104 316
MS.gene007441.t1 AT5G60470 75.521 192 38 3 21 203 20 211 7.06e-104 315
MS.gene007441.t1 AT5G44160 51.622 339 106 7 44 329 8 341 5.24e-103 312
MS.gene007441.t1 AT3G13810 88.235 153 17 1 45 196 68 220 8.22e-98 301
MS.gene007441.t1 AT3G13810 88.235 153 17 1 45 196 82 234 9.42e-98 301
MS.gene007441.t1 AT5G60470 80.745 161 29 2 45 203 46 206 1.00e-94 291
MS.gene007441.t1 AT2G02080 81.295 139 26 0 58 196 1 139 2.43e-88 275
MS.gene007441.t1 AT2G02080 81.295 139 26 0 58 196 1 139 2.43e-88 275
MS.gene007441.t1 AT1G68130 56.842 190 74 3 32 219 39 222 1.16e-74 239
MS.gene007441.t1 AT1G25250 64.780 159 53 2 32 187 31 189 5.95e-74 236
MS.gene007441.t1 AT2G01940 63.190 163 58 2 32 192 42 204 1.30e-73 237
MS.gene007441.t1 AT2G01940 62.195 164 59 3 32 192 42 205 5.50e-70 227
MS.gene007441.t1 AT1G25250 65.306 147 48 2 44 187 20 166 4.19e-69 223
MS.gene007441.t1 AT1G68130 52.817 142 59 3 80 219 1 136 1.11e-45 160
MS.gene007441.t1 AT2G01940 60.870 115 43 2 80 192 1 115 2.95e-44 157
MS.gene007441.t1 AT1G25250 62.162 111 39 2 80 187 1 111 3.07e-44 156
MS.gene007441.t1 AT1G34370 29.918 244 124 8 43 244 14 252 1.49e-24 102
MS.gene007441.t1 AT1G34370 29.918 244 124 8 43 244 224 462 4.16e-24 104
MS.gene007441.t1 AT1G34370 29.918 244 124 8 43 244 224 462 4.16e-24 104
MS.gene007441.t1 AT5G22890 32.530 166 96 4 35 186 191 354 1.35e-22 98.6
MS.gene007441.t1 AT1G13290 34.211 152 88 5 55 195 93 243 2.19e-19 88.6
MS.gene007441.t1 AT1G08290 35.849 159 85 7 44 186 155 312 1.48e-18 86.7
MS.gene007441.t1 AT1G34790 33.333 180 104 7 47 218 129 300 1.58e-18 85.9
MS.gene007441.t1 AT3G20880 34.247 146 86 5 50 186 243 387 3.38e-18 86.3
MS.gene007441.t1 AT1G51220 33.562 146 87 5 50 186 165 309 5.32e-18 85.1
MS.gene007441.t1 AT3G57670 34.247 146 86 5 50 186 204 348 7.35e-18 85.1

Find 81 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTGGTTTGTGGTGGATT+AGG 0.210609 7.3:+11990242 None:intergenic
CCATGATGCGGCCAGGGCCT+TGG 0.232187 7.3:-11989878 MS.gene007441:CDS
AGATTGAACTGCATATTTCT+TGG 0.249648 7.3:+11989783 None:intergenic
TGCTCACAAATGAATATTCT+TGG 0.256662 7.3:-11990329 None:intergenic
GCTAAAATGTTTCTTTATTC+CGG 0.260327 7.3:+11989846 None:intergenic
TAGATTTCTCTTCTTCTTGC+TGG 0.261742 7.3:+11990226 None:intergenic
CTTCAGAAAGCAGCTCAAAT+TGG 0.266190 7.3:-11988621 MS.gene007441:CDS
ACTCATCATCGATGAACTTA+TGG 0.281450 7.3:+11988338 None:intergenic
TGCTGGTTTGTGGTGGATTA+GGG 0.287287 7.3:+11990243 None:intergenic
TATTAACCTCATCATGGTTT+TGG 0.287752 7.3:+11988511 None:intergenic
TTCGTCGCCATTAGAGTCTT+TGG 0.293737 7.3:+11990057 None:intergenic
GCTGAAGATTCTGATCTCTT+TGG 0.295858 7.3:+11990001 None:intergenic
GTTTGTGGTGGATTAGGGTT+AGG 0.305769 7.3:+11990248 None:intergenic
CAACAAAGAACCAAGGAAAA+AGG 0.327722 7.3:-11989932 MS.gene007441:CDS
CTCTTCTTCTTGCTGGTTTG+TGG 0.328936 7.3:+11990233 None:intergenic
TATTTGACGACTCTTCATTC+TGG 0.329154 7.3:+11988883 None:intergenic
TTAATATTACCTGGTGTTCC+TGG 0.358554 7.3:+11990203 None:intergenic
GAAAACATGGTGAGAAGAAA+TGG 0.363622 7.3:-11989822 MS.gene007441:CDS
AAACCATGATGAGGTTAATA+TGG 0.368833 7.3:-11988508 MS.gene007441:CDS
CATGATGCGGCCAGGGCCTT+GGG 0.370145 7.3:-11989877 MS.gene007441:CDS
TTCTGGAAATTTAGAGTTGT+AGG 0.385136 7.3:+11988900 None:intergenic
GCTCTTGAGGTAGAAATTGA+TGG 0.404206 7.3:+11988376 None:intergenic
GTGTCCACCATGATGCGGCC+AGG 0.413040 7.3:-11989885 MS.gene007441:CDS
TCTTTCTCCAAAGACTCTAA+TGG 0.414643 7.3:-11990064 MS.gene007441:CDS
TGCATATTTCGCAGACGAAT+CGG 0.417602 7.3:+11990034 None:intergenic
TTTGTGGTGGATTAGGGTTA+GGG 0.429876 7.3:+11990249 None:intergenic
AATATGCAGTTCAATCTGAT+TGG 0.433651 7.3:-11989777 MS.gene007441:CDS
TGGTGGACACAGGTCTTCTC+CGG 0.437364 7.3:+11989898 None:intergenic
TTCAACCACAGTGACAAGTT+TGG 0.441620 7.3:+11988759 None:intergenic
GACCTTTGCTTTAGCTTCCA+TGG 0.442243 7.3:+11989955 None:intergenic
AGTTTAAATCAATTCAATGC+TGG 0.449709 7.3:-11988318 MS.gene007441:CDS
TCACTTGATCATGTTTCATC+GGG 0.450338 7.3:-11988702 MS.gene007441:CDS
TTGAAGTTTGTCAAAACCTC+CGG 0.458884 7.3:+11990280 None:intergenic
TTCACTTGATCATGTTTCAT+CGG 0.469156 7.3:-11988703 MS.gene007441:CDS
GGTGAGGTCACCCAAGGCCC+TGG 0.470064 7.3:+11989867 None:intergenic
GTGGAAGAGGATAGTGAAAA+GGG 0.477404 7.3:+11990302 None:intergenic
TTCTTCTTGCTGGTTTGTGG+TGG 0.478291 7.3:+11990236 None:intergenic
AGAGCAATGACTTCGGCATC+CGG 0.484253 7.3:+11990084 None:intergenic
CTATGGTTGGTAATTCTAGT+GGG 0.487415 7.3:-11988425 MS.gene007441:CDS
GTTTAAATCAATTCAATGCT+GGG 0.488084 7.3:-11988317 MS.gene007441:CDS
TTTGCTTTAGCTTCCATGGT+AGG 0.488944 7.3:+11989959 None:intergenic
GTCAAAACCTCCGGTGGAAG+AGG 0.490780 7.3:+11990289 None:intergenic
AGGGCCTTGGGTGACCTCAC+CGG 0.495108 7.3:-11989865 MS.gene007441:CDS
CCAAGGCCCTGGCCGCATCA+TGG 0.496782 7.3:+11989878 None:intergenic
TGTCCACCATGATGCGGCCA+GGG 0.498285 7.3:-11989884 MS.gene007441:CDS
GCAAACTTTGCTAGCTCTTG+AGG 0.498977 7.3:+11988363 None:intergenic
TAGTAGTACTAGTGCAGCTA+TGG 0.503693 7.3:-11988442 MS.gene007441:CDS
GCTATGGTTGGTAATTCTAG+TGG 0.507355 7.3:-11988426 MS.gene007441:CDS
GGTGGAAGAGGATAGTGAAA+AGG 0.509534 7.3:+11990301 None:intergenic
TGACCATATTAACCTCATCA+TGG 0.523171 7.3:+11988505 None:intergenic
CAACAATTTAGTCCACATGC+AGG 0.543450 7.3:-11988798 MS.gene007441:CDS
GCTGCACTAGTACTACTACT+TGG 0.544040 7.3:+11988447 None:intergenic
TAAACTCGTTGTTTGTGTAG+AGG 0.545158 7.3:+11988536 None:intergenic
GGCCGCATCATGGTGGACAC+AGG 0.576015 7.3:+11989888 None:intergenic
AATCTTCAGCTTCATAGAAG+AGG 0.576550 7.3:-11989988 MS.gene007441:CDS
TGGAGAAAGAGCAATGACTT+CGG 0.587031 7.3:+11990077 None:intergenic
TATTCCGGTGAGGTCACCCA+AGG 0.589649 7.3:+11989861 None:intergenic
AGTACTAGTGCAGCTATGGT+TGG 0.590350 7.3:-11988438 MS.gene007441:CDS
GGTGGACACAGGTCTTCTCC+GGG 0.591060 7.3:+11989899 None:intergenic
AGAAATCTACCAGGAACACC+AGG 0.591098 7.3:-11990212 MS.gene007441:intron
TGCTCATGAAATCCTGCATG+TGG 0.593771 7.3:+11988786 None:intergenic
GAAACATGATCAAGTGAATG+TGG 0.599435 7.3:+11988708 None:intergenic
ACTGTGGTACACTCTTCTCT+AGG 0.600160 7.3:-11989711 MS.gene007441:intron
TCACTATCCTCTTCCACCGG+AGG 0.603318 7.3:-11990296 MS.gene007441:CDS
GAAGAGGTCACAACCTACCA+TGG 0.609397 7.3:-11989972 MS.gene007441:CDS
TTTAAACCAAAACCATGATG+AGG 0.609478 7.3:-11988517 MS.gene007441:CDS
GTCTGCGAAATATGCAACAA+AGG 0.612364 7.3:-11990027 MS.gene007441:CDS
AGAAGTGCAGTAGCTGACAT+TGG 0.615729 7.3:+11988642 None:intergenic
TACCATGGAAGCTAAAGCAA+AGG 0.618651 7.3:-11989957 MS.gene007441:CDS
AATGTTTCTTTATTCCGGTG+AGG 0.626985 7.3:+11989851 None:intergenic
CATGGATTGATATCATCTCA+AGG 0.627308 7.3:-11988834 MS.gene007441:CDS
AAGTTTGTCAAAACCTCCGG+TGG 0.633133 7.3:+11990283 None:intergenic
GACCTGTGTCCACCATGATG+CGG 0.639865 7.3:-11989890 MS.gene007441:CDS
ACACAAACTAGTTTGTCACA+TGG 0.646370 7.3:-11988852 MS.gene007441:CDS
AAAGCTCACACTAAAACTTG+TGG 0.646859 7.3:-11989754 MS.gene007441:CDS
AAAGGTCCAACAAAGAACCA+AGG 0.658252 7.3:-11989939 MS.gene007441:CDS
AAGAAGAAGAGAAATCTACC+AGG 0.661464 7.3:-11990221 MS.gene007441:CDS
AGGCCCTGGCCGCATCATGG+TGG 0.664444 7.3:+11989881 None:intergenic
AGAGAATATAAGTGTGACTG+TGG 0.678389 7.3:-11989727 MS.gene007441:CDS
TGGAAGAGGATAGTGAAAAG+GGG 0.698551 7.3:+11990303 None:intergenic
AAAGACCAAACTTGTCACTG+TGG 0.746204 7.3:-11988764 MS.gene007441:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTATTAAATATTAAA+AGG + chr7.3:11988454-11988473 None:intergenic 0.0%
!! ATAATAGCATTAAATTATAA+TGG - chr7.3:11989462-11989481 MS.gene007441:intron 10.0%
!! AAAGTTTAATTAATATTACC+TGG + chr7.3:11988428-11988447 None:intergenic 15.0%
!!! TTATTAACAAATTTTTGCAT+CGG - chr7.3:11989020-11989039 MS.gene007441:intron 15.0%
!!! TTTCAAATATGTTTTGAATT+TGG - chr7.3:11988495-11988514 MS.gene007441:CDS 15.0%
!!! TTTTCAATATCAAAAGATTT+TGG - chr7.3:11988963-11988982 MS.gene007441:CDS 15.0%
!! AAAATAGTACTACAATTTGA+TGG + chr7.3:11989517-11989536 None:intergenic 20.0%
!! CAAATTAAGAAAAGTTGTTA+AGG - chr7.3:11989313-11989332 MS.gene007441:intron 20.0%
!! CAAGTTCAAATAAAAAGATA+TGG + chr7.3:11989401-11989420 None:intergenic 20.0%
!! TTGTGAATAATTAAATTCAG+AGG + chr7.3:11989296-11989315 None:intergenic 20.0%
!!! ATAAAAACTTGTTTCGTTAA+AGG - chr7.3:11989422-11989441 MS.gene007441:intron 20.0%
!!! CTATTTTTTTTGCCTATATA+TGG - chr7.3:11989530-11989549 MS.gene007441:intron 20.0%
! AATACTCCATAACCATATAT+AGG + chr7.3:11989545-11989564 None:intergenic 25.0%
! AGTTTAAATCAATTCAATGC+TGG - chr7.3:11990301-11990320 MS.gene007441:CDS 25.0%
! ATAAAAAGATATGGTAGTCT+AGG + chr7.3:11989392-11989411 None:intergenic 25.0%
! ATGAATTGCATGGTTAAAAT+TGG + chr7.3:11989102-11989121 None:intergenic 25.0%
! GCTAAAATGTTTCTTTATTC+CGG + chr7.3:11988776-11988795 None:intergenic 25.0%
! GTAAATGATTAGGTTTCTAA+TGG - chr7.3:11989609-11989628 MS.gene007441:intron 25.0%
! GTTTAAATCAATTCAATGCT+GGG - chr7.3:11990302-11990321 MS.gene007441:CDS 25.0%
!! ATGGTTAAAATTGGTTTAAC+TGG + chr7.3:11989093-11989112 None:intergenic 25.0%
!! TTTTTGCCTATATATGGTTA+TGG - chr7.3:11989536-11989555 MS.gene007441:intron 25.0%
!!! AAACATTTTAGCAGAAAACA+TGG - chr7.3:11988784-11988803 MS.gene007441:CDS 25.0%
!!! GATTAATCTGTTGATTTTCT+TGG + chr7.3:11989886-11989905 None:intergenic 25.0%
!!! TAAATCTTTTGTTTTCGATG+TGG - chr7.3:11989155-11989174 MS.gene007441:intron 25.0%
AAACCATGATGAGGTTAATA+TGG - chr7.3:11990111-11990130 MS.gene007441:intron 30.0%
AAACTTCCACTAAAAATGGA+AGG + chr7.3:11990046-11990065 None:intergenic 30.0%
AATATGCAGTTCAATCTGAT+TGG - chr7.3:11988842-11988861 MS.gene007441:CDS 30.0%
ACCAAAACTTCCACTAAAAA+TGG + chr7.3:11990050-11990069 None:intergenic 30.0%
ACTGCATAGTGTAAATGATT+AGG - chr7.3:11989599-11989618 MS.gene007441:intron 30.0%
AGATTGAACTGCATATTTCT+TGG + chr7.3:11988839-11988858 None:intergenic 30.0%
ATCAGTATGAATGAATTGCA+TGG + chr7.3:11989112-11989131 None:intergenic 30.0%
TAGAATAAACAAGCACTACT+CGG + chr7.3:11989574-11989593 None:intergenic 30.0%
TAGTTTCAAAGACAAAAGTC+AGG - chr7.3:11988991-11989010 MS.gene007441:intron 30.0%
TTCACTTGATCATGTTTCAT+CGG - chr7.3:11989916-11989935 MS.gene007441:CDS 30.0%
TTTAAACCAAAACCATGATG+AGG - chr7.3:11990102-11990121 MS.gene007441:intron 30.0%
! TATTAACCTCATCATGGTTT+TGG + chr7.3:11990111-11990130 None:intergenic 30.0%
! TTCTGGAAATTTAGAGTTGT+AGG + chr7.3:11989722-11989741 None:intergenic 30.0%
! TTTTTCTGATGTTGTGCAAA+TGG - chr7.3:11989940-11989959 MS.gene007441:CDS 30.0%
!! ACTAATCCTTCCATTTTTAG+TGG - chr7.3:11990037-11990056 MS.gene007441:CDS 30.0%
!!! TCCATTTTTAGTGGAAGTTT+TGG - chr7.3:11990046-11990065 MS.gene007441:CDS 30.0%
AAAGCTCACACTAAAACTTG+TGG - chr7.3:11988865-11988884 MS.gene007441:CDS 35.0%
AAGAAGAAGAGAAATCTACC+AGG - chr7.3:11988398-11988417 MS.gene007441:CDS 35.0%
AATCTTCAGCTTCATAGAAG+AGG - chr7.3:11988631-11988650 MS.gene007441:CDS 35.0%
AATGTTTCTTTATTCCGGTG+AGG + chr7.3:11988771-11988790 None:intergenic 35.0%
ACTCATCATCGATGAACTTA+TGG + chr7.3:11990284-11990303 None:intergenic 35.0%
AGAGAATATAAGTGTGACTG+TGG - chr7.3:11988892-11988911 MS.gene007441:CDS 35.0%
CAACAAAGAACCAAGGAAAA+AGG - chr7.3:11988687-11988706 MS.gene007441:CDS 35.0%
GAAAACATGGTGAGAAGAAA+TGG - chr7.3:11988797-11988816 MS.gene007441:CDS 35.0%
GAAACATGATCAAGTGAATG+TGG + chr7.3:11989914-11989933 None:intergenic 35.0%
GGATTGAAATACTACAGATC+CGG - chr7.3:11988516-11988535 MS.gene007441:CDS 35.0%
TAAACTCGTTGTTTGTGTAG+AGG + chr7.3:11990086-11990105 None:intergenic 35.0%
TAGATTTCTCTTCTTCTTGC+TGG + chr7.3:11988396-11988415 None:intergenic 35.0%
TATTTGACGACTCTTCATTC+TGG + chr7.3:11989739-11989758 None:intergenic 35.0%
TCACTTGATCATGTTTCATC+GGG - chr7.3:11989917-11989936 MS.gene007441:CDS 35.0%
TCTTTCTCCAAAGACTCTAA+TGG - chr7.3:11988555-11988574 MS.gene007441:CDS 35.0%
TGACCATATTAACCTCATCA+TGG + chr7.3:11990117-11990136 None:intergenic 35.0%
TTAATATTACCTGGTGTTCC+TGG + chr7.3:11988419-11988438 None:intergenic 35.0%
TTGAAGTTTGTCAAAACCTC+CGG + chr7.3:11988342-11988361 None:intergenic 35.0%
! AATGGTACATTTTACTGCAC+AGG - chr7.3:11989627-11989646 MS.gene007441:intron 35.0%
! ACACAAACTAGTTTGTCACA+TGG - chr7.3:11989767-11989786 MS.gene007441:CDS 35.0%
! CAGATGTATACCTTTTTCCT+TGG + chr7.3:11988700-11988719 None:intergenic 35.0%
! CATGGATTGATATCATCTCA+AGG - chr7.3:11989785-11989804 MS.gene007441:CDS 35.0%
!! AGTGGGTTTAGAGATTTTCT+TGG - chr7.3:11990211-11990230 MS.gene007441:intron 35.0%
!! CTATGGTTGGTAATTCTAGT+GGG - chr7.3:11990194-11990213 MS.gene007441:intron 35.0%
!! CTTTTTCCTTGGTTCTTTGT+TGG + chr7.3:11988689-11988708 None:intergenic 35.0%
AAAGACCAAACTTGTCACTG+TGG - chr7.3:11989855-11989874 MS.gene007441:CDS 40.0%
AAAGGTCCAACAAAGAACCA+AGG - chr7.3:11988680-11988699 MS.gene007441:CDS 40.0%
CAACAATTTAGTCCACATGC+AGG - chr7.3:11989821-11989840 MS.gene007441:CDS 40.0%
CTTCAGAAAGCAGCTCAAAT+TGG - chr7.3:11989998-11990017 MS.gene007441:CDS 40.0%
GCTCTTGAGGTAGAAATTGA+TGG + chr7.3:11990246-11990265 None:intergenic 40.0%
GCTGAAGATTCTGATCTCTT+TGG + chr7.3:11988621-11988640 None:intergenic 40.0%
GTCTGCGAAATATGCAACAA+AGG - chr7.3:11988592-11988611 MS.gene007441:CDS 40.0%
GTGGAAGAGGATAGTGAAAA+GGG + chr7.3:11988320-11988339 None:intergenic 40.0%
TACCATGGAAGCTAAAGCAA+AGG - chr7.3:11988662-11988681 MS.gene007441:CDS 40.0%
TAGTAGTACTAGTGCAGCTA+TGG - chr7.3:11990177-11990196 MS.gene007441:intron 40.0%
TGCATATTTCGCAGACGAAT+CGG + chr7.3:11988588-11988607 None:intergenic 40.0%
TGGAAGAGGATAGTGAAAAG+GGG + chr7.3:11988319-11988338 None:intergenic 40.0%
TGGAGAAAGAGCAATGACTT+CGG + chr7.3:11988545-11988564 None:intergenic 40.0%
TTCAACCACAGTGACAAGTT+TGG + chr7.3:11989863-11989882 None:intergenic 40.0%
! GAAAAAGGTATACATCTGCC+CGG - chr7.3:11988702-11988721 MS.gene007441:CDS 40.0%
! GTACATTTTACTGCACAGGA+AGG - chr7.3:11989631-11989650 MS.gene007441:intron 40.0%
! TTTGCTTTAGCTTCCATGGT+AGG + chr7.3:11988663-11988682 None:intergenic 40.0%
! TTTTCACTATCCTCTTCCAC+CGG - chr7.3:11988320-11988339 MS.gene007441:CDS 40.0%
!! GCTATGGTTGGTAATTCTAG+TGG - chr7.3:11990193-11990212 MS.gene007441:intron 40.0%
!! TTTGTGGTGGATTAGGGTTA+GGG + chr7.3:11988373-11988392 None:intergenic 40.0%
AAGTTTGTCAAAACCTCCGG+TGG + chr7.3:11988339-11988358 None:intergenic 45.0%
ACTGTGGTACACTCTTCTCT+AGG - chr7.3:11988908-11988927 MS.gene007441:CDS 45.0%
AGAAATCTACCAGGAACACC+AGG - chr7.3:11988407-11988426 MS.gene007441:CDS 45.0%
AGTACTAGTGCAGCTATGGT+TGG - chr7.3:11990181-11990200 MS.gene007441:intron 45.0%
GCTGCACTAGTACTACTACT+TGG + chr7.3:11990175-11990194 None:intergenic 45.0%
GGTGGAAGAGGATAGTGAAA+AGG + chr7.3:11988321-11988340 None:intergenic 45.0%
TGCTCATGAAATCCTGCATG+TGG + chr7.3:11989836-11989855 None:intergenic 45.0%
TTCGTCGCCATTAGAGTCTT+TGG + chr7.3:11988565-11988584 None:intergenic 45.0%
! AGAAGTGCAGTAGCTGACAT+TGG + chr7.3:11989980-11989999 None:intergenic 45.0%
! GACCTTTGCTTTAGCTTCCA+TGG + chr7.3:11988667-11988686 None:intergenic 45.0%
! GCAAACTTTGCTAGCTCTTG+AGG + chr7.3:11990259-11990278 None:intergenic 45.0%
!! CTCTTCTTCTTGCTGGTTTG+TGG + chr7.3:11988389-11988408 None:intergenic 45.0%
!! GTTTGTGGTGGATTAGGGTT+AGG + chr7.3:11988374-11988393 None:intergenic 45.0%
!! TGCTGGTTTGTGGTGGATTA+GGG + chr7.3:11988379-11988398 None:intergenic 45.0%
!! TTCTTCTTGCTGGTTTGTGG+TGG + chr7.3:11988386-11988405 None:intergenic 45.0%
!! TTGCTGGTTTGTGGTGGATT+AGG + chr7.3:11988380-11988399 None:intergenic 45.0%
AGAGCAATGACTTCGGCATC+CGG + chr7.3:11988538-11988557 None:intergenic 50.0%
GAAGAGGTCACAACCTACCA+TGG - chr7.3:11988647-11988666 MS.gene007441:CDS 50.0%
GACCTGTGTCCACCATGATG+CGG - chr7.3:11988729-11988748 MS.gene007441:CDS 55.0%
GTCAAAACCTCCGGTGGAAG+AGG + chr7.3:11988333-11988352 None:intergenic 55.0%
TATTCCGGTGAGGTCACCCA+AGG + chr7.3:11988761-11988780 None:intergenic 55.0%
TCACTATCCTCTTCCACCGG+AGG - chr7.3:11988323-11988342 MS.gene007441:CDS 55.0%
! TGGTGGACACAGGTCTTCTC+CGG + chr7.3:11988724-11988743 None:intergenic 55.0%
GGTGGACACAGGTCTTCTCC+GGG + chr7.3:11988723-11988742 None:intergenic 60.0%
TGTCCACCATGATGCGGCCA+GGG - chr7.3:11988735-11988754 MS.gene007441:CDS 60.0%
AGGGCCTTGGGTGACCTCAC+CGG - chr7.3:11988754-11988773 MS.gene007441:CDS 65.0%
CATGATGCGGCCAGGGCCTT+GGG - chr7.3:11988742-11988761 MS.gene007441:CDS 65.0%
GTGTCCACCATGATGCGGCC+AGG - chr7.3:11988734-11988753 MS.gene007441:CDS 65.0%
!! GGCCGCATCATGGTGGACAC+AGG + chr7.3:11988734-11988753 None:intergenic 65.0%
AGGCCCTGGCCGCATCATGG+TGG + chr7.3:11988741-11988760 None:intergenic 70.0%
CCAAGGCCCTGGCCGCATCA+TGG + chr7.3:11988744-11988763 None:intergenic 70.0%
CCATGATGCGGCCAGGGCCT+TGG - chr7.3:11988741-11988760 MS.gene007441:CDS 70.0%
GGTGAGGTCACCCAAGGCCC+TGG + chr7.3:11988755-11988774 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 11988299 11990342 11988299 ID=MS.gene007441
chr7.3 mRNA 11988299 11990342 11988299 ID=MS.gene007441.t1;Parent=MS.gene007441
chr7.3 exon 11990213 11990342 11990213 ID=MS.gene007441.t1.exon1;Parent=MS.gene007441.t1
chr7.3 CDS 11990213 11990342 11990213 ID=cds.MS.gene007441.t1;Parent=MS.gene007441.t1
chr7.3 exon 11989712 11990108 11989712 ID=MS.gene007441.t1.exon2;Parent=MS.gene007441.t1
chr7.3 CDS 11989712 11990108 11989712 ID=cds.MS.gene007441.t1;Parent=MS.gene007441.t1
chr7.3 exon 11988299 11988992 11988299 ID=MS.gene007441.t1.exon3;Parent=MS.gene007441.t1
chr7.3 CDS 11988299 11988992 11988299 ID=cds.MS.gene007441.t1;Parent=MS.gene007441.t1
Gene Sequence

>MS.gene007441

ATGAATATTCTTGGTGACCCCTTTTCACTATCCTCTTCCACCGGAGGTTTTGACAAACTTCAAAACACAAACCCTAACCCTAATCCACCACAAACCAGCAAGAAGAAGAGAAATCTACCAGGAACACCAGGTAATATTAATTAAACTTTTTTCCTTTTAATATTTAATAAATAAAGTATTTTTGCTATATATATTTTTTCAAATATGTTTTGAATTTGGATTGAAATACTACAGATCCGGATGCCGAAGTCATTGCTCTTTCTCCAAAGACTCTAATGGCGACGAACCGATTCGTCTGCGAAATATGCAACAAAGGATTCCAAAGAGATCAGAATCTTCAGCTTCATAGAAGAGGTCACAACCTACCATGGAAGCTAAAGCAAAGGTCCAACAAAGAACCAAGGAAAAAGGTATACATCTGCCCGGAGAAGACCTGTGTCCACCATGATGCGGCCAGGGCCTTGGGTGACCTCACCGGAATAAAGAAACATTTTAGCAGAAAACATGGTGAGAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACACTAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGTACACTCTTCTCTAGGTAATTTAATTCATTAATTTTTTTCATTTTTAATTTTCAATATCAAAAGATTTTGGTGACTTAGTTTCAAAGACAAAAGTCAGGACAAATTTATTAACAAATTTTTGCATCGGCAGTCAAATTTAAACTTACGTTCTTGCAAGATATGAGTGTATTATTACCAGTTAAACCAATTTTAACCATGCAATTCATTCATACTGATTTTTTATGAACAAAAAGTTTCTGTAAATCTTTTGTTTTCGATGTGGATGAAAAAACTGTTTTTTTTTTTTTTTTACAAGTCAAAATAAAAAGCTATTTTTCTTTTCATTTAGTTATACTTCTATCATGCATTTGCATTATGTTTGAATTTAATGCATACTTCCTCTGAATTTAATTATTCACAAATTAAGAAAAGTTGTTAAGGTATATCTCAAACTATAATGTTTTTGTTGACTTAAAAATGTTACTATTGCATTTCCTAGACTACCATATCTTTTTATTTGAACTTGTATAAAAACTTGTTTCGTTAAAGGATATTTTGATAATAATAATAATAGCATTAAATTATAATGGTGAAAGTAGTTCGATTTTACTTATATTGTCCATCAAATTGTAGTACTATTTTTTTTGCCTATATATGGTTATGGAGTATTTAAATTCCGAGTAGTGCTTGTTTATTCTAGTACTACTGCATAGTGTAAATGATTAGGTTTCTAATGGTACATTTTACTGCACAGGAAGGATAGCTTTATTACACATAGAGCTTTCTGTGACGCATTAGCTGTAGAAAGTGCAAGACACTCATCTCCTACAACTCTAAATTTCCAGAATGAAGAGTCGTCAAATATGATGAACACACAAACTAGTTTGTCACATGGATTGATATCATCTCAAGGACTTCAAAGTCTTCAACAATTTAGTCCACATGCAGGATTTCATGAGCAAAGACCAAACTTGTCACTGTGGTTGAACCAAGAAAATCAACAGATTAATCATCATCCACATTCACTTGATCATGTTTCATCGGGTTTTTCTGATGTTGTGCAAATGGCTCAAACTAATACTCCAATGTCAGCTACTGCACTTCTTCAGAAAGCAGCTCAAATTGGTTCAACAAGAAGCACTACTAATCCTTCCATTTTTAGTGGAAGTTTTGGTGTAATGAGTTCATCCTCTACACAAACAACGAGTTTAAACCAAAACCATGATGAGGTTAATATGGTCATTAATCAGAAAATGAAGCAGCATGAGAATTTTGATCCAAGTAGTAGTACTAGTGCAGCTATGGTTGGTAATTCTAGTGGGTTTAGAGATTTTCTTGGAGTGAGTAACCATCAATTTCTACCTCAAGAGCTAGCAAAGTTTGCTTCCATAAGTTCATCGATGATGAGTTTAAATCAATTCAATGCTGGGTGCATCAATGAAAATTAA
Protein sequence

>MS.gene007441.t1

MNILGDPFSLSSSTGGFDKLQNTNPNPNPPQTSKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPEKTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAVESARHSSPTTLNFQNEESSNMMNTQTSLSHGLISSQGLQSLQQFSPHAGFHEQRPNLSLWLNQENQQINHHPHSLDHVSSGFSDVVQMAQTNTPMSATALLQKAAQIGSTRSTTNPSIFSGSFGVMSSSSTQTTSLNQNHDEVNMVINQKMKQHENFDPSSSTSAAMVGNSSGFRDFLGVSNHQFLPQELAKFASISSSMMSLNQFNAGCINEN