AlfalfaGEDB | MS.gene007480

M. sativa cultivar XinJiangDaYe / MS.gene007480

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007480.t1	XP_003625561.1	92.4	437	33	0	1	437	2	438	5.50E-225	790

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007480.t1	Q9ZUU0	36.6	448	231	7	1	427	1	416	7.9e-63	242.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007480.t1	G7L1N8	92.4	437	33	0	1	437	2	438	4.0e-225	790.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene007480.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007480.t1	MTR_7g100510	95.195	437	21	0	1	437	2	438	0.0	866
MS.gene007480.t1	MTR_5g042920	47.842	278	116	5	173	437	136	397	6.22e-80	254
MS.gene007480.t1	MTR_7g011820	51.321	265	103	5	173	419	213	469	1.29e-78	253
MS.gene007480.t1	MTR_7g011820	41.584	101	53	2	322	422	195	289	2.07e-16	81.6
MS.gene007480.t1	MTR_5g094430	45.487	277	142	4	150	425	27	295	1.33e-72	234
MS.gene007480.t1	MTR_5g094430	45.487	277	142	4	150	425	49	317	1.71e-72	234
MS.gene007480.t1	MTR_5g094430	46.494	271	136	4	150	419	161	423	5.19e-72	236
MS.gene007480.t1	MTR_3g056100	51.477	237	102	4	183	419	94	317	2.16e-69	226
MS.gene007480.t1	MTR_3g056100	48.571	245	110	4	183	419	94	330	2.51e-69	227
MS.gene007480.t1	MTR_7g080020	44.884	303	125	6	170	431	263	564	3.85e-69	234

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007480.t1	AT2G37260	44.843	446	183	13	1	420	1	409	1.79e-106	322
MS.gene007480.t1	AT2G37260	45.152	361	138	10	83	420	4	327	8.03e-87	269
MS.gene007480.t1	AT2G37260	45.706	361	138	9	83	420	4	329	2.86e-86	267
MS.gene007480.t1	AT2G03340	51.837	245	109	4	182	425	244	480	4.92e-80	256
MS.gene007480.t1	AT1G13960	49.600	250	110	3	182	419	70	315	4.70e-77	244
MS.gene007480.t1	AT1G13960	49.600	250	110	3	182	419	223	468	4.10e-76	246
MS.gene007480.t1	AT2G38470	51.639	244	106	5	185	419	181	421	1.90e-68	226
MS.gene007480.t1	AT4G26640	43.056	288	143	7	150	425	128	406	1.91e-68	226
MS.gene007480.t1	AT4G26640	43.056	288	143	7	150	425	96	374	2.38e-68	225
MS.gene007480.t1	AT4G26640	43.056	288	143	7	150	425	168	446	3.95e-68	226

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Find 98 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTATAAACCTGGGATA+TGG	0.347198	7.2:-11693885	None:intergenic
AAAATTCTTGTGGTCTAAGT+GGG	0.492248	7.2:+11693139	MS.gene007480:CDS
AAACTACAATATCCGCCATT+AGG	0.452468	7.2:+11691484	MS.gene007480:CDS
AAAGTTGAAAGATCATTAGA+TGG	0.489403	7.2:+11692910	MS.gene007480:CDS
AAATGAAGTGGCAGTATCAG+AGG	0.580061	7.2:+11693755	MS.gene007480:CDS
AAATTCTTGTGGTCTAAGTG+GGG	0.680578	7.2:+11693140	MS.gene007480:CDS
AACGAATATCTCCCCTTCTC+AGG	0.464851	7.2:+11691533	MS.gene007480:CDS
AAGCAAAGGATTTGAGGCAG+AGG	0.578305	7.2:+11693176	MS.gene007480:CDS
AATCAGAATGAAAGGAATGA+AGG	0.486904	7.2:+11693066	MS.gene007480:CDS
ACAACATCAAAAGCGAAACT+CGG	0.546405	7.2:+11692981	MS.gene007480:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTCTTGTGGTCTAAGT+GGG	+	chr7.2:11693139-11693158	MS.gene007480:CDS	30.0%
AATCAGAATGAAAGGAATGA+AGG	+	chr7.2:11693066-11693085	MS.gene007480:CDS	30.0%
ACGAAAAAGATTACAAACGA+AGG	-	chr7.2:11692065-11692084	None:intergenic	30.0%
AGAAAGGTTATTCTTCATAG+TGG	+	chr7.2:11692115-11692134	MS.gene007480:intron	30.0%
AGTCACTAACACAAATATAG+CGG	-	chr7.2:11692475-11692494	None:intergenic	30.0%
ATCTCTCATTTACAAACCAA+TGG	+	chr7.2:11691890-11691909	MS.gene007480:CDS	30.0%
CTCCAAAAGAAGATAAAAAG+AGG	-	chr7.2:11692557-11692576	None:intergenic	30.0%
GAATGGTTCAAGATAAAGTA+TGG	+	chr7.2:11693031-11693050	MS.gene007480:CDS	30.0%
GATTTGTATGAAGAACAAGT+AGG	-	chr7.2:11691408-11691427	None:intergenic	30.0%
GGATATAACTGGAGAAAATA+TGG	+	chr7.2:11692811-11692830	MS.gene007480:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	11691351	11694477	11691351	ID=MS.gene007480
chr7.2	mRNA	11691351	11694477	11691351	ID=MS.gene007480.t1;Parent=MS.gene007480
chr7.2	exon	11691351	11691554	11691351	ID=MS.gene007480.t1.exon1;Parent=MS.gene007480.t1
chr7.2	CDS	11691351	11691554	11691351	ID=cds.MS.gene007480.t1;Parent=MS.gene007480.t1
chr7.2	exon	11691825	11691956	11691825	ID=MS.gene007480.t1.exon2;Parent=MS.gene007480.t1
chr7.2	CDS	11691825	11691956	11691825	ID=cds.MS.gene007480.t1;Parent=MS.gene007480.t1
chr7.2	exon	11692580	11693223	11692580	ID=MS.gene007480.t1.exon3;Parent=MS.gene007480.t1
chr7.2	CDS	11692580	11693223	11692580	ID=cds.MS.gene007480.t1;Parent=MS.gene007480.t1
chr7.2	exon	11693737	11693895	11693737	ID=MS.gene007480.t1.exon4;Parent=MS.gene007480.t1
chr7.2	CDS	11693737	11693895	11693737	ID=cds.MS.gene007480.t1;Parent=MS.gene007480.t1
chr7.2	exon	11694303	11694477	11694303	ID=MS.gene007480.t1.exon5;Parent=MS.gene007480.t1
chr7.2	CDS	11694303	11694477	11694303	ID=cds.MS.gene007480.t1;Parent=MS.gene007480.t1

Gene Sequence

>MS.gene007480

ATGGATATTGAAGAAGCAGAAAGAGTAGTTGTTGCCAAACCAGTTGCTTCAAGGCCTACTTGTTCTTCATACAAATCTTTCTCAGAGCTTCTAGCAGGCGCAATCAATTCCACTCCTCCAATTGCATCTTCTCAAACTACAATATCCGCCATTAGGCCAAAGACAGTGAGGTTCAAGCCAGCAACGAATATCTCCCCTTCTCAGGTGAACATTCAGTGCAACATACCATAATGCAGTGTTTTAAAAACCGAACTGAAAGTTCCAACTGATTGAACCTTGAACGGACCATTACTACGGTGTGGTTATTTTGGCGGTTCGATTTTAGTTTTGTCTCGATTCGAGCGGTTTAAGACGGTTGAATCATGACCCAGAGGTCACGCTGGTTCGATGTCCGATTTGGTTTTTAAAACATTGTCATACTATTTTAAAATGCTTCTTGGTTTCTAACAAATGTTGTGTTTTTACCAATTACAGGCTAATATTTTTGGAGGTGCACTTAGCAGCTCTTCTGACATGGATCCCAAACCTGATACCAATCAATCTCTCATTTACAAACCAATGGCAAAATTTGTGTCACAGACAACTGTATCTCTCTTGGCAAACATGGTCAGTATCTACACACACATATATCACAGTTTTTTCTCTCATGCATATAAGTTTGCTCAGTTAGTTTTATTTCTGTTATATTTTGTTATTCATCCTATATATAATCCTTCGTTTGTAATCTTTTTCGTTCAACCAAGTGATCAATGATGAGTTTATTCAGAAAGGTTATTCTTCATAGTGGATGTTTTGAGATGGTTGAGAGTCATATTAAGCAAGATTAACATTATATGTGAGGGCAACTCGCATAATATCATTAGCTTATAGAGTTAAGTTGGGTCTAAATCAAAATTCTAATATGTTATCAAAACCTATCATAGATTTTTTTGGACCTCATGCAGATGTTTAGGCATGCAAACTTTACGCTCCAGATGTGTTTTGGACGTGAGCATATTGGTTAGTGCAATGATATAAACGATGTTTATAAGTGGGGGGACAAACCCTTACTCCCGAGCTAACTTCTGAGGTTAAGTTAGCTCCAAGACCAAATTCTAACGGAAATTTCCAAAAAACATCATCCGCTATATTTGTGTTAGTGACTATAAGAATTTCAGACTTTATCTCTTTTCAATTTGAGACTTGGATTTTTCTTGATACTTACCTCTTTTTATCTTCTTTTGGAGAAGGGAATTTGCAGTACTAATCAGCCACAACCACAGAAATCAATGGAGACCAATCCCCAGCATCTTAACCATGACAACTTTAGAGCTAACACGAGCTCGAAATTACATCAGAACATTACCCTTCCTACAGAAACATATCAGGCCACAGAATCTTGTACGATGGCACCACAGAACATGGAGGAGGACCAAAAAGCATTACCATCCACAAATAATGCTGATAGACCTTCGTATGATGGATATAACTGGAGAAAATATGGACAGAAGCAAGTAAAAGGAAGCGAGTATCCTCGAAGTTACTACAAGTGCACATATCCTAATTGTCCAGTTAAAAAGAAAGTTGAAAGATCATTAGATGGTGAGATTGCAGAAATTGTTTATAAAGGTGAACACAACCATGGAAAGCAACAACATCAAAAGCGAAACTCGGGAGCAACATCAGGAATGATTTCTGATGGAATGGTTCAAGATAAAGTATGGAGTAATAATAGTAATCAGAATGAAAGGAATGAAGGAAGAATAGATAATCAAGTCAAAGCTTCACAGCCTAATGATTTTGCTCTAGAAAATTCTTGTGGTCTAAGTGGGGAATGTGAGGAAGGAAGCAAAGGATTTGAGGCAGAGGAAGATGACCCTAGAAGTAAAAGAAGGTTATTTTTTTTATTAAATCTATAACCTGAAAATAAATAAAAAGAAACAGAGAAGAAAAACACACTAGGAAAATGAAATTTATACACAATTGCTGCATGAGTTTGCAATATATAACTTCATATTATTTGCAATGTTTCAAAAACTGGACCAAAAAGACAGCTTCAACCGTGAACCAGCCAGTTCGTTGATTGGTTTCGTTCCGGGTATACTATAGTCTGGTTGAAGCATATTAAATAGAGTTGAACCAGTTTTCATTTTTTTTTTTTTGTTTATTTTTAATTTGTGTCATCCAGTTCAACCATGATTTGGATGTTTCATTGATTCAATCTCTTGTCCGATTTTTAATTTTAATTCATTGGTTATTTGTGACATAATTTCTTCGGCATTAAGTCAATTAAGTTTGCGCATTGTCCATACAGTAACATATTAGTGATTATAAGGTACCTAACTAATTTTTCATGATAAATTTTTAATTAAAGGATAACTTATGTTAAAAGTTTCTCATTCTTTAGGAAAAATGAGAATCAATCAAATGAAGTGGCAGTATCAGAGGAAGGTTTAGTAGAGCCAGGCATTGTAATGCAAAGTTCTGTGGATTCTGAAGTCCTTGGAGATGGCTTTCGCTGGAGGAAATATGGGCAGAAGGTGGTGAAGGGAAATCCATATCCCAGGTTTATACTTTTCTTCTTCAAAGTAACTTTTATAAATGAGCTGTTTCAAGATTTCAAGATTACTTATACAGCAAGGTTCTAAATTCTGCTATGCATCGGCCCAAAATATCGAGTACATAGGCGGCAATTTCGTACCTGAAATTGTAGCCATCTGTAAAATTAGTACCTAACTTTTGCAAATTAGCCTTTTTGTCTCTGAAATTATAACATGGCGACCAAAACATTTATCAGTTAAGTTCAATTGTTAGATGGTATGATATGACACATTGAATGAAGACGCGGCGCTTGATGTGGACTGCACGTCACTAAGTTTGAGTTTTTATTCAAATGACTAATGATCCTAGTATCTTTTTCTTTATACTCATTTTTTTTTTCTTCTGACAATTGTATTTTTGTTTATCTTGCAGAAGTTACTATAGATGTACTAGTGTCAACTGCAATGTTCGCAAGCACGTGGAGAGATCAATAGATGATCCAAAATCATTTGTGACTACATATGAAGGAAAACACAACCATGAGATGCCACTCAAGAACACAACAACAATGACCTCTGAAAAAGATTCAATGACTTCTCTTAAGTAA

Protein sequence

>MS.gene007480.t1

MDIEEAERVVVAKPVASRPTCSSYKSFSELLAGAINSTPPIASSQTTISAIRPKTVRFKPATNISPSQANIFGGALSSSSDMDPKPDTNQSLIYKPMAKFVSQTTVSLLANMGICSTNQPQPQKSMETNPQHLNHDNFRANTSSKLHQNITLPTETYQATESCTMAPQNMEEDQKALPSTNNADRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSLDGEIAEIVYKGEHNHGKQQHQKRNSGATSGMISDGMVQDKVWSNNSNQNERNEGRIDNQVKASQPNDFALENSCGLSGECEEGSKGFEAEEDDPRSKRRKNENQSNEVAVSEEGLVEPGIVMQSSVDSEVLGDGFRWRKYGQKVVKGNPYPRSYYRCTSVNCNVRKHVERSIDDPKSFVTTYEGKHNHEMPLKNTTTMTSEKDSMTSLK