AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007505

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007505.t1 MTR_2g099990 63.251 283 84 4 33 302 45 320 4.08e-119 354
MS.gene007505.t1 MTR_4g059870 73.756 221 45 6 7 218 6 222 2.53e-115 345
MS.gene007505.t1 MTR_8g017210 56.798 331 104 8 27 329 55 374 1.47e-112 339
MS.gene007505.t1 MTR_1g094115 87.500 168 20 1 34 200 47 214 2.38e-112 339
MS.gene007505.t1 MTR_1g112270 86.875 160 21 0 37 196 47 206 2.59e-108 330
MS.gene007505.t1 MTR_1g016010 61.484 283 86 10 30 308 38 301 2.47e-107 324
MS.gene007505.t1 MTR_2g093960 65.823 237 61 7 34 265 32 253 5.70e-105 317
MS.gene007505.t1 MTR_1g112270 81.287 171 21 1 37 196 47 217 1.16e-104 321
MS.gene007505.t1 MTR_2g090745 45.854 410 147 10 42 380 15 420 7.10e-104 314
MS.gene007505.t1 MTR_2g099990 61.240 258 80 4 58 302 1 251 5.47e-102 308
MS.gene007505.t1 MTR_1g094115 76.786 168 21 2 34 200 47 197 3.35e-94 292
MS.gene007505.t1 MTR_2g017720 77.391 115 21 1 44 158 323 432 2.78e-56 191
MS.gene007505.t1 MTR_3g102000 66.019 103 28 2 61 159 36 135 9.47e-39 139
MS.gene007505.t1 MTR_5g030560 86.667 45 6 0 44 88 16 60 2.52e-22 90.5
MS.gene007505.t1 MTR_1g093095 34.503 171 95 5 28 186 84 249 3.89e-21 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007505.t1 AT5G03150 60.841 309 73 9 3 283 4 292 6.81e-116 347
MS.gene007505.t1 AT3G50700 85.549 173 25 0 24 196 24 196 1.03e-113 340
MS.gene007505.t1 AT5G66730 75.728 206 43 2 11 209 8 213 8.41e-112 337
MS.gene007505.t1 AT5G44160 53.239 355 107 9 28 329 32 380 1.37e-111 335
MS.gene007505.t1 AT1G55110 62.759 290 89 7 30 306 58 341 2.79e-111 334
MS.gene007505.t1 AT1G55110 62.759 290 89 7 30 306 58 341 2.79e-111 334
MS.gene007505.t1 AT1G55110 62.759 290 89 7 30 306 58 341 2.79e-111 334
MS.gene007505.t1 AT3G45260 84.181 177 23 2 33 204 38 214 8.43e-109 327
MS.gene007505.t1 AT3G45260 84.181 177 23 2 33 204 38 214 8.43e-109 327
MS.gene007505.t1 AT1G03840 78.610 187 38 2 28 213 36 221 9.32e-109 329
MS.gene007505.t1 AT3G13810 86.826 167 21 1 31 196 48 214 1.90e-106 323
MS.gene007505.t1 AT1G14580 82.738 168 26 1 29 196 51 215 2.18e-106 322
MS.gene007505.t1 AT1G14580 82.738 168 26 1 29 196 51 215 2.18e-106 322
MS.gene007505.t1 AT3G13810 86.826 167 21 1 31 196 67 233 2.70e-106 323
MS.gene007505.t1 AT3G13810 86.826 167 21 1 31 196 67 233 2.70e-106 323
MS.gene007505.t1 AT3G13810 86.826 167 21 1 31 196 62 228 2.78e-106 323
MS.gene007505.t1 AT2G02070 83.529 170 26 1 34 203 52 219 3.79e-106 325
MS.gene007505.t1 AT2G02070 83.529 170 26 1 34 203 52 219 3.79e-106 325
MS.gene007505.t1 AT1G14580 82.738 168 26 1 29 196 65 229 3.98e-106 322
MS.gene007505.t1 AT1G03840 77.540 187 38 3 28 213 36 219 4.66e-105 320
MS.gene007505.t1 AT4G02670 81.714 175 31 1 34 207 53 227 5.38e-105 316
MS.gene007505.t1 AT2G02080 70.647 201 46 3 7 197 20 217 5.92e-105 320
MS.gene007505.t1 AT2G02080 70.647 201 46 3 7 197 20 217 5.92e-105 320
MS.gene007505.t1 AT2G02080 70.647 201 46 3 7 197 20 217 5.92e-105 320
MS.gene007505.t1 AT2G02080 70.647 201 46 3 7 197 20 217 5.92e-105 320
MS.gene007505.t1 AT4G02670 81.714 175 31 1 34 207 55 229 6.39e-105 316
MS.gene007505.t1 AT5G60470 75.521 192 38 3 21 203 24 215 2.45e-104 316
MS.gene007505.t1 AT5G60470 75.521 192 38 3 21 203 20 211 3.21e-104 316
MS.gene007505.t1 AT5G44160 52.212 339 104 8 44 329 8 341 1.83e-103 313
MS.gene007505.t1 AT3G13810 88.235 153 17 1 45 196 68 220 3.91e-98 302
MS.gene007505.t1 AT3G13810 88.235 153 17 1 45 196 82 234 6.46e-98 301
MS.gene007505.t1 AT5G60470 80.745 161 29 2 45 203 46 206 6.94e-95 292
MS.gene007505.t1 AT2G02080 81.295 139 26 0 58 196 1 139 1.69e-88 275
MS.gene007505.t1 AT2G02080 81.295 139 26 0 58 196 1 139 1.69e-88 275
MS.gene007505.t1 AT1G68130 56.842 190 74 3 32 219 39 222 7.23e-75 239
MS.gene007505.t1 AT1G25250 64.780 159 53 2 32 187 31 189 3.41e-74 236
MS.gene007505.t1 AT2G01940 63.190 163 58 2 32 192 42 204 9.56e-74 237
MS.gene007505.t1 AT2G01940 62.195 164 59 3 32 192 42 205 3.63e-70 228
MS.gene007505.t1 AT1G25250 65.306 147 48 2 44 187 20 166 3.34e-69 223
MS.gene007505.t1 AT1G68130 52.817 142 59 3 80 219 1 136 9.74e-46 160
MS.gene007505.t1 AT1G25250 62.162 111 39 2 80 187 1 111 2.46e-44 156
MS.gene007505.t1 AT2G01940 60.870 115 43 2 80 192 1 115 2.69e-44 157
MS.gene007505.t1 AT1G34370 29.918 244 124 8 43 244 14 252 9.17e-25 103
MS.gene007505.t1 AT1G34370 29.918 244 124 8 43 244 224 462 3.08e-24 104
MS.gene007505.t1 AT1G34370 29.918 244 124 8 43 244 224 462 3.08e-24 104
MS.gene007505.t1 AT5G22890 32.530 166 96 4 35 186 191 354 1.31e-22 99.0
MS.gene007505.t1 AT1G13290 34.211 152 88 5 55 195 93 243 1.79e-19 88.6
MS.gene007505.t1 AT1G08290 35.849 159 85 7 44 186 155 312 1.19e-18 86.7
MS.gene007505.t1 AT1G34790 33.333 180 104 7 47 218 129 300 1.24e-18 86.3
MS.gene007505.t1 AT3G20880 34.247 146 86 5 50 186 243 387 2.76e-18 86.7
MS.gene007505.t1 AT1G51220 33.562 146 87 5 50 186 165 309 4.04e-18 85.1
MS.gene007505.t1 AT3G57670 34.247 146 86 5 50 186 204 348 6.10e-18 85.1

Find 76 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTGGTTTGTGGTGGATT+AGG 0.210609 7.4:+9409702 None:intergenic
CCATGATGCGGCCAGGGCCT+TGG 0.232187 7.4:-9409338 MS.gene007505:CDS
AGATTGAACTGCATATTTCT+TGG 0.249648 7.4:+9409243 None:intergenic
TGCTCACAAATGAATATTCT+TGG 0.256662 7.4:-9409789 None:intergenic
GCTAAAATGTTTCTTTATTC+CGG 0.260327 7.4:+9409306 None:intergenic
TAGATTTCTCTTCTTCTTGC+TGG 0.261742 7.4:+9409686 None:intergenic
CTTCAGAAAGCAGCTCAAAT+TGG 0.266190 7.4:-9408081 MS.gene007505:CDS
ACTCATCATCGATGAACTTA+TGG 0.281450 7.4:+9407798 None:intergenic
TGCTGGTTTGTGGTGGATTA+GGG 0.287287 7.4:+9409703 None:intergenic
TATTAACCTCATCATGGTTT+TGG 0.287752 7.4:+9407971 None:intergenic
TTCGTCGCCATTAGAGTCTT+TGG 0.293737 7.4:+9409517 None:intergenic
GCTGAAGATTCTGATCTCTT+TGG 0.295858 7.4:+9409461 None:intergenic
GTTTGTGGTGGATTAGGGTT+AGG 0.305769 7.4:+9409708 None:intergenic
CAACAAAGAACCAAGGAAAA+AGG 0.327722 7.4:-9409392 MS.gene007505:CDS
CTCTTCTTCTTGCTGGTTTG+TGG 0.328936 7.4:+9409693 None:intergenic
TATTTGACGACTCTTCATTC+TGG 0.329154 7.4:+9408343 None:intergenic
TTAATATTACCTGGTGTTCC+TGG 0.358554 7.4:+9409663 None:intergenic
AAACCATGATGAGGTTAATA+TGG 0.368833 7.4:-9407968 MS.gene007505:CDS
CATGATGCGGCCAGGGCCTT+GGG 0.370145 7.4:-9409337 MS.gene007505:CDS
TTCTGGAAATTTAGAGTTGT+AGG 0.385136 7.4:+9408360 None:intergenic
TTCAACCACAATGACAAGTT+TGG 0.398343 7.4:+9408219 None:intergenic
GCTCTTGAGGTAGAAATTGA+TGG 0.404206 7.4:+9407836 None:intergenic
GAAAACACGGTGAGAAGAAA+TGG 0.409934 7.4:-9409282 MS.gene007505:CDS
GTGTCCACCATGATGCGGCC+AGG 0.413040 7.4:-9409345 MS.gene007505:CDS
TCTTTCTCCAAAGACTCTAA+TGG 0.414643 7.4:-9409524 MS.gene007505:CDS
TGCATATTTCGCAGACGAAT+CGG 0.417602 7.4:+9409494 None:intergenic
TTTGTGGTGGATTAGGGTTA+GGG 0.429876 7.4:+9409709 None:intergenic
AATATGCAGTTCAATCTGAT+TGG 0.433651 7.4:-9409237 MS.gene007505:CDS
TGGTGGACACAGGTCTTCTC+CGG 0.437364 7.4:+9409358 None:intergenic
GACCTTTGCTTTAGCTTCCA+TGG 0.442243 7.4:+9409415 None:intergenic
AGTTTAAATCAATTCAATGC+TGG 0.449709 7.4:-9407778 MS.gene007505:CDS
TAGTAGTAGTAGTGCAGCTA+TGG 0.457270 7.4:-9407902 MS.gene007505:CDS
GGTGAGGTCACCCAAGGCCC+TGG 0.470064 7.4:+9409327 None:intergenic
GTGGAAGAGGATAGTGAAAA+GGG 0.470178 7.4:+9409762 None:intergenic
TTCTTCTTGCTGGTTTGTGG+TGG 0.478291 7.4:+9409696 None:intergenic
AGAGCAATGACTTCGGCATC+CGG 0.484253 7.4:+9409544 None:intergenic
CTATGGTTGGTAATTCTAGT+GGG 0.487415 7.4:-9407885 MS.gene007505:CDS
GTTTAAATCAATTCAATGCT+GGG 0.488084 7.4:-9407777 MS.gene007505:CDS
TTTGCTTTAGCTTCCATGGT+AGG 0.488944 7.4:+9409419 None:intergenic
AGGGCCTTGGGTGACCTCAC+CGG 0.495108 7.4:-9409325 MS.gene007505:CDS
GTCAAAACCTCCTGTGGAAG+AGG 0.496517 7.4:+9409749 None:intergenic
TGTGGAAGAGGATAGTGAAA+AGG 0.496596 7.4:+9409761 None:intergenic
CCAAGGCCCTGGCCGCATCA+TGG 0.496782 7.4:+9409338 None:intergenic
TGTCCACCATGATGCGGCCA+GGG 0.498285 7.4:-9409344 MS.gene007505:CDS
GCAAGCTTTGCTAGCTCTTG+AGG 0.501273 7.4:+9407823 None:intergenic
GCTATGGTTGGTAATTCTAG+TGG 0.507355 7.4:-9407886 MS.gene007505:CDS
TGACCATATTAACCTCATCA+TGG 0.523171 7.4:+9407965 None:intergenic
TCACTATCCTCTTCCACAGG+AGG 0.530954 7.4:-9409756 MS.gene007505:CDS
CAACAATTTAGTCCACATGC+AGG 0.543450 7.4:-9408258 MS.gene007505:CDS
TAAACTCGTTGTTTGTGTAG+AGG 0.545158 7.4:+9407996 None:intergenic
AAGTTTGTCAAAACCTCCTG+TGG 0.563123 7.4:+9409743 None:intergenic
GGCCGCATCATGGTGGACAC+AGG 0.576015 7.4:+9409348 None:intergenic
AATCTTCAGCTTCATAGAAG+AGG 0.576550 7.4:-9409448 MS.gene007505:CDS
TGGAGAAAGAGCAATGACTT+CGG 0.587031 7.4:+9409537 None:intergenic
AGTAGTAGTGCAGCTATGGT+TGG 0.587266 7.4:-9407898 MS.gene007505:CDS
TATTCCGGTGAGGTCACCCA+AGG 0.589649 7.4:+9409321 None:intergenic
GGTGGACACAGGTCTTCTCC+GGG 0.591060 7.4:+9409359 None:intergenic
AGAAATCTACCAGGAACACC+AGG 0.591098 7.4:-9409672 MS.gene007505:intron
TGCTCATGAAATCCTGCATG+TGG 0.593771 7.4:+9408246 None:intergenic
ACTGTGGTACACTCTTCTCT+AGG 0.600160 7.4:-9409171 MS.gene007505:intron
GAAGAGGTCACAACCTACCA+TGG 0.609397 7.4:-9409432 MS.gene007505:CDS
TTTAAACCAAAACCATGATG+AGG 0.609478 7.4:-9407977 MS.gene007505:CDS
GTCTGCGAAATATGCAACAA+AGG 0.612364 7.4:-9409487 MS.gene007505:CDS
AGAAGTGCAGTAGCTGACAT+TGG 0.615729 7.4:+9408102 None:intergenic
TACCATGGAAGCTAAAGCAA+AGG 0.618651 7.4:-9409417 MS.gene007505:CDS
AATGTTTCTTTATTCCGGTG+AGG 0.626985 7.4:+9409311 None:intergenic
CATGGATTGATATCATCTCA+AGG 0.627308 7.4:-9408294 MS.gene007505:CDS
GACCTGTGTCCACCATGATG+CGG 0.639865 7.4:-9409350 MS.gene007505:CDS
ACACAAACTAGTTTGTCACA+TGG 0.646370 7.4:-9408312 MS.gene007505:CDS
AAAGCTCACACTAAAACTTG+TGG 0.646859 7.4:-9409214 MS.gene007505:CDS
AAAGGTCCAACAAAGAACCA+AGG 0.658252 7.4:-9409399 MS.gene007505:CDS
AAGAAGAAGAGAAATCTACC+AGG 0.661464 7.4:-9409681 MS.gene007505:CDS
AGGCCCTGGCCGCATCATGG+TGG 0.664444 7.4:+9409341 None:intergenic
AAAGACCAAACTTGTCATTG+TGG 0.669911 7.4:-9408224 MS.gene007505:CDS
AGAGAATATAAGTGTGACTG+TGG 0.678389 7.4:-9409187 MS.gene007505:CDS
TGGAAGAGGATAGTGAAAAG+GGG 0.696112 7.4:+9409763 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTATTAAATATTAAA+AGG + chr7.4:9407914-9407933 None:intergenic 0.0%
!! ATAATAGCATTAAATTATAA+TGG - chr7.4:9408923-9408942 MS.gene007505:intron 10.0%
!!! TTATTAACAAATTTTTACAT+CGG - chr7.4:9408480-9408499 MS.gene007505:intron 10.0%
!! AAAGTTTAATTAATATTACC+TGG + chr7.4:9407888-9407907 None:intergenic 15.0%
!!! TTTCAAATATGTTTTGAATT+TGG - chr7.4:9407955-9407974 MS.gene007505:CDS 15.0%
!!! TTTTCAATATCAAAAGATTT+TGG - chr7.4:9408423-9408442 MS.gene007505:CDS 15.0%
!! AAAATAGTACTACAATTTGA+TGG + chr7.4:9408978-9408997 None:intergenic 20.0%
!! CAAATTAAGAAAAGTTGTTA+AGG - chr7.4:9408768-9408787 MS.gene007505:intron 20.0%
!! CAAGTTCAAATAAAAAGATA+TGG + chr7.4:9408859-9408878 None:intergenic 20.0%
!! TTGTGAATAATTAAATTCAG+AGG + chr7.4:9408751-9408770 None:intergenic 20.0%
!!! ACTATTTTTTTGCCTATATA+TGG - chr7.4:9408990-9409009 MS.gene007505:intron 20.0%
!!! TTTTTCTAATGTTATGCAAA+TGG - chr7.4:9409400-9409419 MS.gene007505:CDS 20.0%
! AATACTCCATAACCATATAT+AGG + chr7.4:9409005-9409024 None:intergenic 25.0%
! AGTTTAAATCAATTCAATGC+TGG - chr7.4:9409761-9409780 MS.gene007505:CDS 25.0%
! ATAAAAAGATATGGTAGTCT+AGG + chr7.4:9408850-9408869 None:intergenic 25.0%
! ATGAATTGCATGGTTAAAAT+TGG + chr7.4:9408562-9408581 None:intergenic 25.0%
! GCTAAAATGTTTCTTTATTC+CGG + chr7.4:9408236-9408255 None:intergenic 25.0%
! GTAAATGATTAGGTTTCTAA+TGG - chr7.4:9409069-9409088 MS.gene007505:intron 25.0%
! GTTTAAATCAATTCAATGCT+GGG - chr7.4:9409762-9409781 MS.gene007505:CDS 25.0%
!! ATAAAAACTTGTTTCGTTCA+AGG - chr7.4:9408880-9408899 MS.gene007505:intron 25.0%
!! ATGGTTAAAATTGGTTTAAC+TGG + chr7.4:9408553-9408572 None:intergenic 25.0%
!! TTTTTGCCTATATATGGTTA+TGG - chr7.4:9408996-9409015 MS.gene007505:intron 25.0%
!!! AAACATTTTAGCAGAAAACA+CGG - chr7.4:9408244-9408263 MS.gene007505:CDS 25.0%
!!! GATTAATCTGTTGATTTTCT+TGG + chr7.4:9409346-9409365 None:intergenic 25.0%
!!! TAAATCTTTTGTTTTCGATG+TGG - chr7.4:9408615-9408634 MS.gene007505:intron 25.0%
AAACCATGATGAGGTTAATA+TGG - chr7.4:9409571-9409590 MS.gene007505:intron 30.0%
AAACTTCCACTAAAAATGGA+AGG + chr7.4:9409506-9409525 None:intergenic 30.0%
AATATGCAGTTCAATCTGAT+TGG - chr7.4:9408302-9408321 MS.gene007505:CDS 30.0%
ACCAAAACTTCCACTAAAAA+TGG + chr7.4:9409510-9409529 None:intergenic 30.0%
ACTGCATAGTGTAAATGATT+AGG - chr7.4:9409059-9409078 MS.gene007505:intron 30.0%
AGATTGAACTGCATATTTCT+TGG + chr7.4:9408299-9408318 None:intergenic 30.0%
ATCAGTATGAATGAATTGCA+TGG + chr7.4:9408572-9408591 None:intergenic 30.0%
TAGAATAAACAAGCACTACT+CGG + chr7.4:9409034-9409053 None:intergenic 30.0%
TAGTTTCAAAGACAAAAGTC+AGG - chr7.4:9408451-9408470 MS.gene007505:intron 30.0%
TTTAAACCAAAACCATGATG+AGG - chr7.4:9409562-9409581 MS.gene007505:intron 30.0%
! TATTAACCTCATCATGGTTT+TGG + chr7.4:9409571-9409590 None:intergenic 30.0%
! TTCTGGAAATTTAGAGTTGT+AGG + chr7.4:9409182-9409201 None:intergenic 30.0%
!! ACTAATCCTTCCATTTTTAG+TGG - chr7.4:9409497-9409516 MS.gene007505:CDS 30.0%
!!! TCCATTTTTAGTGGAAGTTT+TGG - chr7.4:9409506-9409525 MS.gene007505:CDS 30.0%
AAAGACCAAACTTGTCATTG+TGG - chr7.4:9409315-9409334 MS.gene007505:CDS 35.0%
AAAGCTCACACTAAAACTTG+TGG - chr7.4:9408325-9408344 MS.gene007505:CDS 35.0%
AAGAAGAAGAGAAATCTACC+AGG - chr7.4:9407858-9407877 MS.gene007505:CDS 35.0%
AATCTTCAGCTTCATAGAAG+AGG - chr7.4:9408091-9408110 MS.gene007505:CDS 35.0%
AATGTTTCTTTATTCCGGTG+AGG + chr7.4:9408231-9408250 None:intergenic 35.0%
ACTCATCATCGATGAACTTA+TGG + chr7.4:9409744-9409763 None:intergenic 35.0%
AGAGAATATAAGTGTGACTG+TGG - chr7.4:9408352-9408371 MS.gene007505:CDS 35.0%
CAACAAAGAACCAAGGAAAA+AGG - chr7.4:9408147-9408166 MS.gene007505:CDS 35.0%
GGATTGAAATACTACAGATC+CGG - chr7.4:9407976-9407995 MS.gene007505:CDS 35.0%
TAAACTCGTTGTTTGTGTAG+AGG + chr7.4:9409546-9409565 None:intergenic 35.0%
TAGATTTCTCTTCTTCTTGC+TGG + chr7.4:9407856-9407875 None:intergenic 35.0%
TATTTGACGACTCTTCATTC+TGG + chr7.4:9409199-9409218 None:intergenic 35.0%
TCTTTCTCCAAAGACTCTAA+TGG - chr7.4:9408015-9408034 MS.gene007505:CDS 35.0%
TGACCATATTAACCTCATCA+TGG + chr7.4:9409577-9409596 None:intergenic 35.0%
TTAATATTACCTGGTGTTCC+TGG + chr7.4:9407879-9407898 None:intergenic 35.0%
TTCAACCACAATGACAAGTT+TGG + chr7.4:9409323-9409342 None:intergenic 35.0%
! AATGGTACATTTTACTGCAC+AGG - chr7.4:9409087-9409106 MS.gene007505:intron 35.0%
! ACACAAACTAGTTTGTCACA+TGG - chr7.4:9409227-9409246 MS.gene007505:CDS 35.0%
! CAGATGTATACCTTTTTCCT+TGG + chr7.4:9408160-9408179 None:intergenic 35.0%
! CATGGATTGATATCATCTCA+AGG - chr7.4:9409245-9409264 MS.gene007505:CDS 35.0%
!! AGTGGGTTTAGAGATTTTCT+TGG - chr7.4:9409671-9409690 MS.gene007505:intron 35.0%
!! CTATGGTTGGTAATTCTAGT+GGG - chr7.4:9409654-9409673 MS.gene007505:intron 35.0%
!! CTTTTTCCTTGGTTCTTTGT+TGG + chr7.4:9408149-9408168 None:intergenic 35.0%
AAAGGTCCAACAAAGAACCA+AGG - chr7.4:9408140-9408159 MS.gene007505:CDS 40.0%
AAGTTTGTCAAAACCTCCTG+TGG + chr7.4:9407799-9407818 None:intergenic 40.0%
CAACAATTTAGTCCACATGC+AGG - chr7.4:9409281-9409300 MS.gene007505:CDS 40.0%
CTTCAGAAAGCAGCTCAAAT+TGG - chr7.4:9409458-9409477 MS.gene007505:CDS 40.0%
GAAAACACGGTGAGAAGAAA+TGG - chr7.4:9408257-9408276 MS.gene007505:CDS 40.0%
GCTCTTGAGGTAGAAATTGA+TGG + chr7.4:9409706-9409725 None:intergenic 40.0%
GCTGAAGATTCTGATCTCTT+TGG + chr7.4:9408081-9408100 None:intergenic 40.0%
GTCTGCGAAATATGCAACAA+AGG - chr7.4:9408052-9408071 MS.gene007505:CDS 40.0%
GTGGAAGAGGATAGTGAAAA+GGG + chr7.4:9407780-9407799 None:intergenic 40.0%
TACCATGGAAGCTAAAGCAA+AGG - chr7.4:9408122-9408141 MS.gene007505:CDS 40.0%
TAGTAGTAGTAGTGCAGCTA+TGG - chr7.4:9409637-9409656 MS.gene007505:intron 40.0%
TGCATATTTCGCAGACGAAT+CGG + chr7.4:9408048-9408067 None:intergenic 40.0%
TGGAAGAGGATAGTGAAAAG+GGG + chr7.4:9407779-9407798 None:intergenic 40.0%
TGGAGAAAGAGCAATGACTT+CGG + chr7.4:9408005-9408024 None:intergenic 40.0%
TGTGGAAGAGGATAGTGAAA+AGG + chr7.4:9407781-9407800 None:intergenic 40.0%
! GAAAAAGGTATACATCTGCC+CGG - chr7.4:9408162-9408181 MS.gene007505:CDS 40.0%
! GTACATTTTACTGCACAGGA+AGG - chr7.4:9409091-9409110 MS.gene007505:intron 40.0%
! TTTGCTTTAGCTTCCATGGT+AGG + chr7.4:9408123-9408142 None:intergenic 40.0%
! TTTTCACTATCCTCTTCCAC+AGG - chr7.4:9407780-9407799 MS.gene007505:CDS 40.0%
!! GCTATGGTTGGTAATTCTAG+TGG - chr7.4:9409653-9409672 MS.gene007505:intron 40.0%
!! TTTGTGGTGGATTAGGGTTA+GGG + chr7.4:9407833-9407852 None:intergenic 40.0%
ACTGTGGTACACTCTTCTCT+AGG - chr7.4:9408368-9408387 MS.gene007505:CDS 45.0%
AGAAATCTACCAGGAACACC+AGG - chr7.4:9407867-9407886 MS.gene007505:CDS 45.0%
AGTAGTAGTGCAGCTATGGT+TGG - chr7.4:9409641-9409660 MS.gene007505:intron 45.0%
GCTGCACTACTACTACTACT+TGG + chr7.4:9409635-9409654 None:intergenic 45.0%
TGCTCATGAAATCCTGCATG+TGG + chr7.4:9409296-9409315 None:intergenic 45.0%
TTCGTCGCCATTAGAGTCTT+TGG + chr7.4:9408025-9408044 None:intergenic 45.0%
! AGAAGTGCAGTAGCTGACAT+TGG + chr7.4:9409440-9409459 None:intergenic 45.0%
! GACCTTTGCTTTAGCTTCCA+TGG + chr7.4:9408127-9408146 None:intergenic 45.0%
!! CTCTTCTTCTTGCTGGTTTG+TGG + chr7.4:9407849-9407868 None:intergenic 45.0%
!! GTTTGTGGTGGATTAGGGTT+AGG + chr7.4:9407834-9407853 None:intergenic 45.0%
!! TGCTGGTTTGTGGTGGATTA+GGG + chr7.4:9407839-9407858 None:intergenic 45.0%
!! TTCTTCTTGCTGGTTTGTGG+TGG + chr7.4:9407846-9407865 None:intergenic 45.0%
!! TTGCTGGTTTGTGGTGGATT+AGG + chr7.4:9407840-9407859 None:intergenic 45.0%
AGAGCAATGACTTCGGCATC+CGG + chr7.4:9407998-9408017 None:intergenic 50.0%
GAAGAGGTCACAACCTACCA+TGG - chr7.4:9408107-9408126 MS.gene007505:CDS 50.0%
GTCAAAACCTCCTGTGGAAG+AGG + chr7.4:9407793-9407812 None:intergenic 50.0%
TCACTATCCTCTTCCACAGG+AGG - chr7.4:9407783-9407802 MS.gene007505:CDS 50.0%
! GCAAGCTTTGCTAGCTCTTG+AGG + chr7.4:9409719-9409738 None:intergenic 50.0%
GACCTGTGTCCACCATGATG+CGG - chr7.4:9408189-9408208 MS.gene007505:CDS 55.0%
TATTCCGGTGAGGTCACCCA+AGG + chr7.4:9408221-9408240 None:intergenic 55.0%
! TGGTGGACACAGGTCTTCTC+CGG + chr7.4:9408184-9408203 None:intergenic 55.0%
GGTGGACACAGGTCTTCTCC+GGG + chr7.4:9408183-9408202 None:intergenic 60.0%
TGTCCACCATGATGCGGCCA+GGG - chr7.4:9408195-9408214 MS.gene007505:CDS 60.0%
AGGGCCTTGGGTGACCTCAC+CGG - chr7.4:9408214-9408233 MS.gene007505:CDS 65.0%
CATGATGCGGCCAGGGCCTT+GGG - chr7.4:9408202-9408221 MS.gene007505:CDS 65.0%
GTGTCCACCATGATGCGGCC+AGG - chr7.4:9408194-9408213 MS.gene007505:CDS 65.0%
!! GGCCGCATCATGGTGGACAC+AGG + chr7.4:9408194-9408213 None:intergenic 65.0%
AGGCCCTGGCCGCATCATGG+TGG + chr7.4:9408201-9408220 None:intergenic 70.0%
CCAAGGCCCTGGCCGCATCA+TGG + chr7.4:9408204-9408223 None:intergenic 70.0%
CCATGATGCGGCCAGGGCCT+TGG - chr7.4:9408201-9408220 MS.gene007505:CDS 70.0%
GGTGAGGTCACCCAAGGCCC+TGG + chr7.4:9408215-9408234 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 9407759 9409802 9407759 ID=MS.gene007505
chr7.4 mRNA 9407759 9409802 9407759 ID=MS.gene007505.t1;Parent=MS.gene007505
chr7.4 exon 9409673 9409802 9409673 ID=MS.gene007505.t1.exon1;Parent=MS.gene007505.t1
chr7.4 CDS 9409673 9409802 9409673 ID=cds.MS.gene007505.t1;Parent=MS.gene007505.t1
chr7.4 exon 9409172 9409568 9409172 ID=MS.gene007505.t1.exon2;Parent=MS.gene007505.t1
chr7.4 CDS 9409172 9409568 9409172 ID=cds.MS.gene007505.t1;Parent=MS.gene007505.t1
chr7.4 exon 9407759 9408452 9407759 ID=MS.gene007505.t1.exon3;Parent=MS.gene007505.t1
chr7.4 CDS 9407759 9408452 9407759 ID=cds.MS.gene007505.t1;Parent=MS.gene007505.t1
Gene Sequence

>MS.gene007505

ATGAATATTCTTGGTGACCCCTTTTCACTATCCTCTTCCACAGGAGGTTTTGACAAACTTCAAAACACAAACCCTAACCCTAATCCACCACAAACCAGCAAGAAGAAGAGAAATCTACCAGGAACACCAGGTAATATTAATTAAACTTTTTTCCTTTTAATATTTAATAAATAAAGTATTTTTGCTATATATATTTTTTCAAATATGTTTTGAATTTGGATTGAAATACTACAGATCCGGATGCCGAAGTCATTGCTCTTTCTCCAAAGACTCTAATGGCGACGAACCGATTCGTCTGCGAAATATGCAACAAAGGATTCCAAAGAGATCAGAATCTTCAGCTTCATAGAAGAGGTCACAACCTACCATGGAAGCTAAAGCAAAGGTCCAACAAAGAACCAAGGAAAAAGGTATACATCTGCCCGGAGAAGACCTGTGTCCACCATGATGCGGCCAGGGCCTTGGGTGACCTCACCGGAATAAAGAAACATTTTAGCAGAAAACACGGTGAGAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACACTAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGTACACTCTTCTCTAGGTAATTTAATTCATTAATTTTTTTCATTTTTAATTTTCAATATCAAAAGATTTTGGTGACTTAGTTTCAAAGACAAAAGTCAGGACAAATTTATTAACAAATTTTTACATCGGCAGTCAAATTTAAACTTACGTTCTTGCAAGATATGAGTGTATTATTACCAGTTAAACCAATTTTAACCATGCAATTCATTCATACTGATTTTTTATGAACAAAAAGTTTCTGTAAATCTTTTGTTTTCGATGTGGATGAAAAAACTGTTTTTTTTTTTACAAGTCAAAATAAAAAGCTATTTTTCTTTTCATTTAGTTATACTTCTATCATGCATTTGCATTATGTTTGAATTTAATGCATACTTCCTCTGAATTTAATTATTCACAAATTAAGAAAAGTTGTTAAGGTATATCTCAAACTATAATGTTTTGTTGACTTAATAAAAAATGTTACTATTGCATTTCCTAGACTACCATATCTTTTTATTTGAACTTGTATAAAAACTTGTTTCGTTCAAGGATATTTTGATAATAATAATAATAATAGCATTAAATTATAATGGTGAAAGTAGTTCGATTTTACTTATATTGTCCATCAAATTGTAGTACTATTTTTTTGCCTATATATGGTTATGGAGTATTTAAATTCCGAGTAGTGCTTGTTTATTCTAGTACTACTGCATAGTGTAAATGATTAGGTTTCTAATGGTACATTTTACTGCACAGGAAGGATAGCTTTATTACACATAGAGCTTTCTGTGACGCATTAGCTGTAGAAAGTGCAAGACACTCATCTCCTACAACTCTAAATTTCCAGAATGAAGAGTCGTCAAATATGATGAACACACAAACTAGTTTGTCACATGGATTGATATCATCTCAAGGACTTCAAAGTCTTCAACAATTTAGTCCACATGCAGGATTTCATGAGCAAAGACCAAACTTGTCATTGTGGTTGAACCAAGAAAATCAACAGATTAATCATCATTCACATTCAATTGATCATGTTTCATCAGATTTTTCTAATGTTATGCAAATGGCTCAAACTAATACTCCAATGTCAGCTACTGCACTTCTTCAGAAAGCAGCTCAAATTGGTTCAACAAGAAGTACTACTAATCCTTCCATTTTTAGTGGAAGTTTTGGTGTAATGAGTTCATCCTCTACACAAACAACGAGTTTAAACCAAAACCATGATGAGGTTAATATGGTCATTAATCAGAAAATGAAGCAGCATGAGAATTTTGATCCAAGTAGTAGTAGTAGTGCAGCTATGGTTGGTAATTCTAGTGGGTTTAGAGATTTTCTTGGAGTGAGTAACCATCAATTTCTACCTCAAGAGCTAGCAAAGCTTGCTTCCATAAGTTCATCGATGATGAGTTTAAATCAATTCAATGCTGGGTGCATCAATGAAAATTAA
Protein sequence

>MS.gene007505.t1

MNILGDPFSLSSSTGGFDKLQNTNPNPNPPQTSKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPEKTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAVESARHSSPTTLNFQNEESSNMMNTQTSLSHGLISSQGLQSLQQFSPHAGFHEQRPNLSLWLNQENQQINHHSHSIDHVSSDFSNVMQMAQTNTPMSATALLQKAAQIGSTRSTTNPSIFSGSFGVMSSSSTQTTSLNQNHDEVNMVINQKMKQHENFDPSSSSSAAMVGNSSGFRDFLGVSNHQFLPQELAKLASISSSMMSLNQFNAGCINEN