Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007587.t1 | XP_003625742.1 | 97.8 | 92 | 2 | 0 | 22 | 113 | 103 | 194 | 1.90E-43 | 185.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007587.t1 | G7L4Z3 | 97.8 | 92 | 2 | 0 | 22 | 113 | 103 | 194 | 1.4e-43 | 185.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene007587.t1 | TF | PLATZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007587.t1 | MTR_7g102790 | 97.872 | 94 | 2 | 0 | 20 | 113 | 101 | 194 | 1.34e-63 | 193 |
| MS.gene007587.t1 | MTR_1g062160 | 69.892 | 93 | 27 | 1 | 22 | 113 | 101 | 193 | 1.83e-38 | 129 |
| MS.gene007587.t1 | MTR_5g007230 | 42.424 | 99 | 52 | 1 | 22 | 120 | 114 | 207 | 3.30e-18 | 77.4 |
| MS.gene007587.t1 | MTR_5g030130 | 44.554 | 101 | 41 | 3 | 22 | 113 | 128 | 222 | 1.43e-17 | 76.3 |
| MS.gene007587.t1 | MTR_4g078170 | 40.404 | 99 | 46 | 4 | 22 | 113 | 108 | 200 | 4.76e-15 | 68.9 |
| MS.gene007587.t1 | MTR_8g066820 | 44.444 | 99 | 44 | 3 | 22 | 113 | 126 | 220 | 8.50e-14 | 65.9 |
| MS.gene007587.t1 | MTR_5g030130 | 76.471 | 34 | 8 | 0 | 22 | 55 | 128 | 161 | 1.07e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007587.t1 | AT1G76590 | 62.069 | 58 | 21 | 1 | 22 | 79 | 111 | 167 | 8.69e-17 | 74.3 |
| MS.gene007587.t1 | AT1G32700 | 38.947 | 95 | 50 | 2 | 22 | 114 | 66 | 154 | 4.30e-15 | 68.6 |
| MS.gene007587.t1 | AT1G21000 | 66.038 | 53 | 15 | 2 | 22 | 72 | 109 | 160 | 5.73e-15 | 69.3 |
| MS.gene007587.t1 | AT1G21000 | 66.038 | 53 | 15 | 2 | 22 | 72 | 106 | 157 | 6.06e-15 | 69.3 |
| MS.gene007587.t1 | AT1G32700 | 38.947 | 95 | 50 | 2 | 22 | 114 | 105 | 193 | 9.59e-15 | 68.2 |
| MS.gene007587.t1 | AT4G17900 | 45.238 | 84 | 38 | 3 | 22 | 103 | 113 | 190 | 9.76e-12 | 60.1 |
| MS.gene007587.t1 | AT4G17900 | 45.238 | 84 | 38 | 3 | 22 | 103 | 127 | 204 | 1.43e-11 | 60.1 |
| MS.gene007587.t1 | AT1G43000 | 50.000 | 54 | 25 | 1 | 22 | 73 | 109 | 162 | 8.72e-11 | 57.8 |
Find 37 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTTCGGTTCTGTTCTT+TGG | 0.144073 | 7.1:-9630926 | MS.gene007587:CDS |
| GCTACTCCTTTCCCAGATTT+TGG | 0.169958 | 7.1:+9630985 | None:intergenic |
| TTTCTTCTCCTTGCATTTAA+AGG | 0.172328 | 7.1:+9629738 | None:intergenic |
| TCATTTCGGTTCTGTTCTTT+GGG | 0.305955 | 7.1:-9630925 | MS.gene007587:CDS |
| TTACTACCTGAATGACTTGA+TGG | 0.329584 | 7.1:+9631401 | None:intergenic |
| GTTAGGCCTCAACCAAAATC+TGG | 0.351742 | 7.1:-9630997 | MS.gene007587:intron |
| CAAAGACCATCAAGTCATTC+AGG | 0.358735 | 7.1:-9631407 | MS.gene007587:intron |
| GTTCTGTTCTTTGGGTTGTA+AGG | 0.391861 | 7.1:-9630917 | MS.gene007587:intron |
| TGGAGATGCAAGCTTTGCTT+TGG | 0.396373 | 7.1:-9629871 | MS.gene007587:CDS |
| GGAGCTTGTTGGATTCATTT+CGG | 0.401131 | 7.1:-9630939 | MS.gene007587:CDS |
| CTCCTTGCATTTAAAGGAGG+TGG | 0.416107 | 7.1:+9629744 | None:intergenic |
| GGAGGTGGAGGAGGCGTGAG+AGG | 0.445087 | 7.1:+9629759 | None:intergenic |
| GCTCACATTTGTGAGATTTG+TGG | 0.456800 | 7.1:-9630964 | MS.gene007587:CDS |
| TCTTTCTAGTGCAGTTCATC+CGG | 0.459363 | 7.1:-9629064 | MS.gene007587:intron |
| AGATGCAAGCTTTGCTTTGG+AGG | 0.464996 | 7.1:-9629868 | MS.gene007587:CDS |
| GCTTTGGAGGGTAAGAATGA+AGG | 0.469335 | 7.1:-9629855 | MS.gene007587:CDS |
| TTAAATGCAAGGAGAAGAAA+AGG | 0.487088 | 7.1:-9629735 | MS.gene007587:intron |
| CACCTATCGGAAGACGAGTT+CGG | 0.489066 | 7.1:+9629004 | None:intergenic |
| GGAAGACGAGTTCGGTGGAT+AGG | 0.491395 | 7.1:+9629012 | None:intergenic |
| GCATTTAAAGGAGGTGGAGG+AGG | 0.494494 | 7.1:+9629750 | None:intergenic |
| CTTCTCCTTGCATTTAAAGG+AGG | 0.503493 | 7.1:+9629741 | None:intergenic |
| AATGAAGGATTGACAATGGA+AGG | 0.518953 | 7.1:-9629840 | MS.gene007587:CDS |
| GATGCAAGCTTTGCTTTGGA+GGG | 0.525049 | 7.1:-9629867 | MS.gene007587:CDS |
| GATTTGTGGAAGGAGCTTGT+TGG | 0.527361 | 7.1:-9630950 | MS.gene007587:CDS |
| GAAGACGAGTTCGGTGGATA+GGG | 0.537323 | 7.1:+9629013 | None:intergenic |
| CTCCACCTCCTTTAAATGCA+AGG | 0.542768 | 7.1:-9629746 | MS.gene007587:CDS |
| CTTGCATTTAAAGGAGGTGG+AGG | 0.548902 | 7.1:+9629747 | None:intergenic |
| TTAGGCCTCAACCAAAATCT+GGG | 0.556600 | 7.1:-9630996 | MS.gene007587:intron |
| TAAGAATGAAGGATTGACAA+TGG | 0.573703 | 7.1:-9629844 | MS.gene007587:CDS |
| CCTCAACCAAAATCTGGGAA+AGG | 0.603599 | 7.1:-9630991 | MS.gene007587:CDS |
| AGTATAGTGATACAAGAGGC+CGG | 0.621911 | 7.1:+9629045 | None:intergenic |
| ACATTTGTGAGATTTGTGGA+AGG | 0.623549 | 7.1:-9630960 | MS.gene007587:CDS |
| CACCGAACTCGTCTTCCGAT+AGG | 0.629722 | 7.1:-9629006 | None:intergenic |
| CTATCGGAAGACGAGTTCGG+TGG | 0.632836 | 7.1:+9629007 | None:intergenic |
| ACAGAGTATAGTGATACAAG+AGG | 0.648195 | 7.1:+9629041 | None:intergenic |
| TTAGATTGCAACAATGGTGA+TGG | 0.649321 | 7.1:-9631463 | None:intergenic |
| TCAGAAGAAGAATTGCGTGA+AGG | 0.679765 | 7.1:-9629801 | MS.gene007587:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAAATATATTTAAAA+AGG | + | chr7.1:9631218-9631237 | None:intergenic | 0.0% |
| !! | ATTAAACTATATTTAGATAA+AGG | + | chr7.1:9630233-9630252 | None:intergenic | 10.0% |
| !! | TTAAACTATATTTAGATAAA+GGG | + | chr7.1:9630232-9630251 | None:intergenic | 10.0% |
| !! | TTAATTATTATCTAATAGTT+GGG | - | chr7.1:9631074-9631093 | MS.gene007587:intron | 10.0% |
| !! | TTTAATTATTATCTAATAGT+TGG | - | chr7.1:9631073-9631092 | MS.gene007587:intron | 10.0% |
| !!! | AATTCTTTTTACAATAATAA+AGG | - | chr7.1:9630885-9630904 | MS.gene007587:intron | 10.0% |
| !!! | TAATAATATTCTCTTTTTTA+CGG | - | chr7.1:9629885-9629904 | MS.gene007587:CDS | 10.0% |
| !! | AAAAGAATTATATAATGACT+AGG | + | chr7.1:9630874-9630893 | None:intergenic | 15.0% |
| !! | AAAATATATTTAAAAAGGTG+TGG | + | chr7.1:9631213-9631232 | None:intergenic | 15.0% |
| !! | GATAATATATAATATTTGCT+TGG | - | chr7.1:9630166-9630185 | MS.gene007587:intron | 15.0% |
| !! | TAAACATTCATATATGAAAT+GGG | + | chr7.1:9629146-9629165 | None:intergenic | 15.0% |
| !! | TAATTATTATCTAATAGTTG+GGG | - | chr7.1:9631075-9631094 | MS.gene007587:intron | 15.0% |
| !! | TTAAACATTCATATATGAAA+TGG | + | chr7.1:9629147-9629166 | None:intergenic | 15.0% |
| !! | TTTGTTTATCTATCATAATT+AGG | - | chr7.1:9629986-9630005 | MS.gene007587:intron | 15.0% |
| !!! | ATATGAATGTTTAATTTTCT+GGG | - | chr7.1:9629153-9629172 | MS.gene007587:intron | 15.0% |
| !!! | ATTATGAGTTTTTATAAACA+TGG | - | chr7.1:9629919-9629938 | MS.gene007587:intron | 15.0% |
| !!! | TATATGAATGTTTAATTTTC+TGG | - | chr7.1:9629152-9629171 | MS.gene007587:intron | 15.0% |
| !!! | TGATAATGTACAAAATTTAT+TGG | + | chr7.1:9630076-9630095 | None:intergenic | 15.0% |
| !!! | TTATGAGTTTTTATAAACAT+GGG | - | chr7.1:9629920-9629939 | MS.gene007587:intron | 15.0% |
| !! | AAAAAGAAAACTCAAAATGT+AGG | + | chr7.1:9629961-9629980 | None:intergenic | 20.0% |
| !! | AATTATTATCTAATAGTTGG+GGG | - | chr7.1:9631076-9631095 | MS.gene007587:intron | 20.0% |
| !! | ATAATTATGATGTTGAATGA+TGG | + | chr7.1:9629769-9629788 | None:intergenic | 20.0% |
| !! | CTTGAAAGAATAAAGAAAAA+TGG | - | chr7.1:9630566-9630585 | MS.gene007587:intron | 20.0% |
| !! | GTAAAAATGATTTACAAAGT+CGG | - | chr7.1:9630197-9630216 | MS.gene007587:intron | 20.0% |
| !! | TAATAAAGGTGAAAAAGATT+AGG | - | chr7.1:9630899-9630918 | MS.gene007587:intron | 20.0% |
| !! | TGATGTATAATGTAATGTAA+GGG | - | chr7.1:9629232-9629251 | MS.gene007587:intron | 20.0% |
| !! | TTGATGTATAATGTAATGTA+AGG | - | chr7.1:9629231-9629250 | MS.gene007587:intron | 20.0% |
| !! | TTTCTTTATTGAAAACCTAA+CGG | - | chr7.1:9629085-9629104 | MS.gene007587:intron | 20.0% |
| !!! | AAAATTGGTAACGATAAAAT+AGG | + | chr7.1:9631298-9631317 | None:intergenic | 20.0% |
| !!! | ATTAATGTATTTGGTGAAAT+GGG | - | chr7.1:9629189-9629208 | MS.gene007587:intron | 20.0% |
| !!! | ATTTAATTTATATACCACGT+TGG | + | chr7.1:9630421-9630440 | None:intergenic | 20.0% |
| !!! | TATGAGTTTTTATAAACATG+GGG | - | chr7.1:9629921-9629940 | MS.gene007587:intron | 20.0% |
| !!! | TATTAATGTATTTGGTGAAA+TGG | - | chr7.1:9629188-9629207 | MS.gene007587:intron | 20.0% |
| !!! | TATTTTATCGTTACCAATTT+TGG | - | chr7.1:9631297-9631316 | MS.gene007587:intron | 20.0% |
| !!! | TGAAAAATAATATGATGATG+TGG | - | chr7.1:9630144-9630163 | MS.gene007587:intron | 20.0% |
| ! | AATTAAAAAGCAAGTCTTTG+TGG | - | chr7.1:9631128-9631147 | MS.gene007587:intron | 25.0% |
| ! | ACTCAATTATACTCATCATA+TGG | - | chr7.1:9629693-9629712 | MS.gene007587:intron | 25.0% |
| ! | ATTATTATCTAATAGTTGGG+GGG | - | chr7.1:9631077-9631096 | MS.gene007587:intron | 25.0% |
| ! | ATTCCTTCTAAACTCAAAAT+TGG | - | chr7.1:9630786-9630805 | MS.gene007587:intron | 25.0% |
| ! | ATTTGGAAAAGTAAAGGAAA+GGG | - | chr7.1:9630958-9630977 | MS.gene007587:CDS | 25.0% |
| ! | CTCAATTATACTCATCATAT+GGG | - | chr7.1:9629694-9629713 | MS.gene007587:intron | 25.0% |
| ! | GCATGATGAATAATTAAAAG+CGG | + | chr7.1:9629799-9629818 | None:intergenic | 25.0% |
| ! | GCATGTCATATACAAATAAT+TGG | - | chr7.1:9630490-9630509 | MS.gene007587:intron | 25.0% |
| ! | GGACAATGAAAACTATAAAA+CGG | + | chr7.1:9631157-9631176 | None:intergenic | 25.0% |
| ! | GGTAAATGTACTAATTATGA+AGG | + | chr7.1:9629821-9629840 | None:intergenic | 25.0% |
| ! | GTAATTAATCGAAATGTGAA+TGG | + | chr7.1:9629842-9629861 | None:intergenic | 25.0% |
| ! | TCTATCATAATTAGGACATT+TGG | - | chr7.1:9629994-9630013 | MS.gene007587:intron | 25.0% |
| ! | TGCATGTAAAACTAATAATG+AGG | - | chr7.1:9631251-9631270 | MS.gene007587:intron | 25.0% |
| !!! | CAATATTCAATTTTTTCCCT+TGG | - | chr7.1:9630817-9630836 | MS.gene007587:intron | 25.0% |
| !!! | GATTTGTTTGTTGTTTTTGT+TGG | - | chr7.1:9629315-9629334 | MS.gene007587:intron | 25.0% |
| !!! | TACTATGCATTATTGATTCT+TGG | + | chr7.1:9631049-9631068 | None:intergenic | 25.0% |
| !!! | TTCTTGATTTGGAAAAGTAA+AGG | - | chr7.1:9630952-9630971 | MS.gene007587:CDS | 25.0% |
| AAAACCTAACGGCAAAATAT+AGG | - | chr7.1:9629096-9629115 | MS.gene007587:intron | 30.0% | |
| AAAATCACAATGCGTCAATT+AGG | + | chr7.1:9630023-9630042 | None:intergenic | 30.0% | |
| CAGAAACTATGAGATTTGAT+TGG | + | chr7.1:9630100-9630119 | None:intergenic | 30.0% | |
| GAATACAATACAACCCTATT+TGG | - | chr7.1:9630839-9630858 | MS.gene007587:intron | 30.0% | |
| GATGAATAATTAAAAGCGGT+GGG | + | chr7.1:9629795-9629814 | None:intergenic | 30.0% | |
| GATTTGGAAAAGTAAAGGAA+AGG | - | chr7.1:9630957-9630976 | MS.gene007587:CDS | 30.0% | |
| GCATTGCAGATTCAAAAAAT+GGG | - | chr7.1:9629118-9629137 | MS.gene007587:intron | 30.0% | |
| TAAGAATGAAGGATTGACAA+TGG | - | chr7.1:9630613-9630632 | MS.gene007587:intron | 30.0% | |
| TGATGAATAATTAAAAGCGG+TGG | + | chr7.1:9629796-9629815 | None:intergenic | 30.0% | |
| TGTATAATGTAATGTAAGGG+TGG | - | chr7.1:9629235-9629254 | MS.gene007587:intron | 30.0% | |
| TGTGGTTACCTTTATGTAAA+CGG | + | chr7.1:9631195-9631214 | None:intergenic | 30.0% | |
| TTAAATGCAAGGAGAAGAAA+AGG | - | chr7.1:9630722-9630741 | MS.gene007587:intron | 30.0% | |
| TTTCTTCTCCTTGCATTTAA+AGG | + | chr7.1:9630722-9630741 | None:intergenic | 30.0% | |
| ! | AAAGAAAACTCCTTCTTTTC+CGG | - | chr7.1:9630989-9631008 | MS.gene007587:CDS | 30.0% |
| ! | AAATGTAGGTGATGATGTAT+GGG | + | chr7.1:9629734-9629753 | None:intergenic | 30.0% |
| ! | AAGAAAAGGTATACCTCATA+GGG | - | chr7.1:9630736-9630755 | MS.gene007587:intron | 30.0% |
| ! | AAGTAAAGGAAAGGGTATAT+AGG | - | chr7.1:9630966-9630985 | MS.gene007587:CDS | 30.0% |
| !! | CATTATTGATTCTTGGACAA+GGG | + | chr7.1:9631042-9631061 | None:intergenic | 30.0% |
| !! | GTTGATAATGATATGGACAT+TGG | + | chr7.1:9629657-9629676 | None:intergenic | 30.0% |
| !! | TGGTGTAAAGGCTTTTAAAA+CGG | + | chr7.1:9630401-9630420 | None:intergenic | 30.0% |
| !! | TGTGCATGTTGATAATGATA+TGG | + | chr7.1:9629664-9629683 | None:intergenic | 30.0% |
| !!! | AGGGAGGATTTGTTTTTTTT+AGG | + | chr7.1:9631023-9631042 | None:intergenic | 30.0% |
| !!! | GGGAGGATTTGTTTTTTTTA+GGG | + | chr7.1:9631022-9631041 | None:intergenic | 30.0% |
| !!! | GTACCAATTTTGAGTTTAGA+AGG | + | chr7.1:9630792-9630811 | None:intergenic | 30.0% |
| !!! | TTTTGGTTCCTCATTCTAAT+GGG | - | chr7.1:9630763-9630782 | MS.gene007587:intron | 30.0% |
| AATGAAGGATTGACAATGGA+AGG | - | chr7.1:9630617-9630636 | MS.gene007587:intron | 35.0% | |
| ACAATACAACCCTATTTGGT+GGG | - | chr7.1:9630843-9630862 | MS.gene007587:intron | 35.0% | |
| ACAGAGTATAGTGATACAAG+AGG | + | chr7.1:9631419-9631438 | None:intergenic | 35.0% | |
| ACATTTGTGAGATTTGTGGA+AGG | - | chr7.1:9629497-9629516 | MS.gene007587:intron | 35.0% | |
| AGGGTTGTATTGTATTCCAA+GGG | + | chr7.1:9630836-9630855 | None:intergenic | 35.0% | |
| CATTAGAATGAGGAACCAAA+AGG | + | chr7.1:9630764-9630783 | None:intergenic | 35.0% | |
| GACGAACTCAAAACCATAAA+TGG | + | chr7.1:9631368-9631387 | None:intergenic | 35.0% | |
| GGCATTGCAGATTCAAAAAA+TGG | - | chr7.1:9629117-9629136 | MS.gene007587:intron | 35.0% | |
| TACAATACAACCCTATTTGG+TGG | - | chr7.1:9630842-9630861 | MS.gene007587:intron | 35.0% | |
| TAGGGTTGTATTGTATTCCA+AGG | + | chr7.1:9630837-9630856 | None:intergenic | 35.0% | |
| TATATACCACGTTGGTGTAA+AGG | + | chr7.1:9630413-9630432 | None:intergenic | 35.0% | |
| TCATTTCGGTTCTGTTCTTT+GGG | - | chr7.1:9629532-9629551 | MS.gene007587:intron | 35.0% | |
| TCCATTGAGATCTCCAAAAT+TGG | + | chr7.1:9631313-9631332 | None:intergenic | 35.0% | |
| TGAAAAAGATTAGGAGCCTT+TGG | - | chr7.1:9630908-9630927 | MS.gene007587:intron | 35.0% | |
| TTACTACCTGAATGACTTGA+TGG | + | chr7.1:9629059-9629078 | None:intergenic | 35.0% | |
| TTCATTTCGGTTCTGTTCTT+TGG | - | chr7.1:9629531-9629550 | MS.gene007587:intron | 35.0% | |
| ! | AATGCCTATATTTTGCCGTT+AGG | + | chr7.1:9629103-9629122 | None:intergenic | 35.0% |
| ! | ATATATTCTGCTGCATTGAC+AGG | - | chr7.1:9630459-9630478 | MS.gene007587:intron | 35.0% |
| ! | ATGATGTTGAATGATGGAGA+TGG | + | chr7.1:9629763-9629782 | None:intergenic | 35.0% |
| ! | CAAATGTAGGTGATGATGTA+TGG | + | chr7.1:9629735-9629754 | None:intergenic | 35.0% |
| ! | GAAGAAAAGGTATACCTCAT+AGG | - | chr7.1:9630735-9630754 | MS.gene007587:intron | 35.0% |
| ! | GTCTCTATGTTTGCCATTTA+TGG | - | chr7.1:9631352-9631371 | MS.gene007587:intron | 35.0% |
| ! | TAGGTTTTTCCCACCAAATA+GGG | + | chr7.1:9630855-9630874 | None:intergenic | 35.0% |
| ! | TATATTCTGCTGCATTGACA+GGG | - | chr7.1:9630460-9630479 | MS.gene007587:intron | 35.0% |
| ! | TGATGTTGAATGATGGAGAT+GGG | + | chr7.1:9629762-9629781 | None:intergenic | 35.0% |
| !! | ACCAATTTTGGAGATCTCAA+TGG | - | chr7.1:9631309-9631328 | MS.gene007587:intron | 35.0% |
| !! | GAGTCTTGTTCTTGAATGTT+AGG | - | chr7.1:9629443-9629462 | MS.gene007587:intron | 35.0% |
| !! | GCATTATTGATTCTTGGACA+AGG | + | chr7.1:9631043-9631062 | None:intergenic | 35.0% |
| !! | TTCCAAATCAAGAAGTACCT+TGG | + | chr7.1:9630946-9630965 | None:intergenic | 35.0% |
| !! | TTTTGGAGATCTCAATGGAT+TGG | - | chr7.1:9631314-9631333 | MS.gene007587:intron | 35.0% |
| !!! | CTTTTGGTTCCTCATTCTAA+TGG | - | chr7.1:9630762-9630781 | MS.gene007587:intron | 35.0% |
| !!! | TTTTTTTTAGGGACCCAAAC+CGG | + | chr7.1:9631011-9631030 | None:intergenic | 35.0% |
| AAAAGATTAGGAGCCTTTGG+AGG | - | chr7.1:9630911-9630930 | MS.gene007587:intron | 40.0% | |
| AAAGATTAGGAGCCTTTGGA+GGG | - | chr7.1:9630912-9630931 | MS.gene007587:intron | 40.0% | |
| AGTATAGTGATACAAGAGGC+CGG | + | chr7.1:9631415-9631434 | None:intergenic | 40.0% | |
| CAAAGACCATCAAGTCATTC+AGG | - | chr7.1:9629050-9629069 | MS.gene007587:CDS | 40.0% | |
| CTTCTCCTTGCATTTAAAGG+AGG | + | chr7.1:9630719-9630738 | None:intergenic | 40.0% | |
| GAACTGCACTAGAAAGAGAT+AGG | + | chr7.1:9631390-9631409 | None:intergenic | 40.0% | |
| GAAGGAATCCCATTAGAATG+AGG | + | chr7.1:9630774-9630793 | None:intergenic | 40.0% | |
| GCTCACATTTGTGAGATTTG+TGG | - | chr7.1:9629493-9629512 | MS.gene007587:intron | 40.0% | |
| TAAAAGCCTTTACACCAACG+TGG | - | chr7.1:9630404-9630423 | MS.gene007587:intron | 40.0% | |
| TCAGAAGAAGAATTGCGTGA+AGG | - | chr7.1:9630656-9630675 | MS.gene007587:intron | 40.0% | |
| TTAGGCCTCAACCAAAATCT+GGG | - | chr7.1:9629461-9629480 | MS.gene007587:intron | 40.0% | |
| ! | AAACTCCTTCTTTTCCGGTT+TGG | - | chr7.1:9630994-9631013 | MS.gene007587:CDS | 40.0% |
| ! | AACTCCTTCTTTTCCGGTTT+GGG | - | chr7.1:9630995-9631014 | MS.gene007587:CDS | 40.0% |
| ! | ATATTCTGCTGCATTGACAG+GGG | - | chr7.1:9630461-9630480 | MS.gene007587:intron | 40.0% |
| ! | CTAGGTTTTTCCCACCAAAT+AGG | + | chr7.1:9630856-9630875 | None:intergenic | 40.0% |
| ! | GTCAGAGATTCAGAAAGTGT+TGG | - | chr7.1:9629381-9629400 | MS.gene007587:intron | 40.0% |
| ! | GTCCAAGGTACTTCTTGATT+TGG | - | chr7.1:9630941-9630960 | MS.gene007587:CDS | 40.0% |
| ! | TCTTTCTAGTGCAGTTCATC+CGG | - | chr7.1:9631393-9631412 | MS.gene007587:intron | 40.0% |
| !! | ATCTCAATGGATTGGACGAT+TGG | - | chr7.1:9631322-9631341 | MS.gene007587:intron | 40.0% |
| !! | CAGAAAGTGTTGGACATTAG+TGG | - | chr7.1:9629391-9629410 | MS.gene007587:intron | 40.0% |
| !! | GGAGCTTGTTGGATTCATTT+CGG | - | chr7.1:9629518-9629537 | MS.gene007587:intron | 40.0% |
| !! | GTTCTGTTCTTTGGGTTGTA+AGG | - | chr7.1:9629540-9629559 | MS.gene007587:intron | 40.0% |
| !! | TATTGATTCTTGGACAAGGG+AGG | + | chr7.1:9631039-9631058 | None:intergenic | 40.0% |
| AGATGCAAGCTTTGCTTTGG+AGG | - | chr7.1:9630589-9630608 | MS.gene007587:intron | 45.0% | |
| ATGTAAACGGCCCATGTGAA+TGG | + | chr7.1:9631182-9631201 | None:intergenic | 45.0% | |
| CACATGGGCCGTTTACATAA+AGG | - | chr7.1:9631184-9631203 | MS.gene007587:intron | 45.0% | |
| CATTGTCCCACCATTCACAT+GGG | - | chr7.1:9631169-9631188 | MS.gene007587:intron | 45.0% | |
| CCTCAACCAAAATCTGGGAA+AGG | - | chr7.1:9629466-9629485 | MS.gene007587:intron | 45.0% | |
| CTCCACCTCCTTTAAATGCA+AGG | - | chr7.1:9630711-9630730 | MS.gene007587:intron | 45.0% | |
| CTCCTTGCATTTAAAGGAGG+TGG | + | chr7.1:9630716-9630735 | None:intergenic | 45.0% | |
| CTTGCATTTAAAGGAGGTGG+AGG | + | chr7.1:9630713-9630732 | None:intergenic | 45.0% | |
| GATTTGTGGAAGGAGCTTGT+TGG | - | chr7.1:9629507-9629526 | MS.gene007587:intron | 45.0% | |
| GTTAGGCCTCAACCAAAATC+TGG | - | chr7.1:9629460-9629479 | MS.gene007587:intron | 45.0% | |
| TCATTGTCCCACCATTCACA+TGG | - | chr7.1:9631168-9631187 | MS.gene007587:intron | 45.0% | |
| TGGAGATGCAAGCTTTGCTT+TGG | - | chr7.1:9630586-9630605 | MS.gene007587:intron | 45.0% | |
| ! | AAGATTAGGAGCCTTTGGAG+GGG | - | chr7.1:9630913-9630932 | MS.gene007587:intron | 45.0% |
| ! | GATGCAAGCTTTGCTTTGGA+GGG | - | chr7.1:9630590-9630609 | MS.gene007587:intron | 45.0% |
| ! | GCTACTCCTTTCCCAGATTT+TGG | + | chr7.1:9629475-9629494 | None:intergenic | 45.0% |
| ! | GGAGATGGGCTTTCAAATGT+AGG | + | chr7.1:9629748-9629767 | None:intergenic | 45.0% |
| ! | TGTAGGTGATGATGTATGGG+TGG | + | chr7.1:9629731-9629750 | None:intergenic | 45.0% |
| !! | ATACCTCATAGGGCACCTTT+TGG | - | chr7.1:9630746-9630765 | MS.gene007587:intron | 45.0% |
| !! | GCTTTGGAGGGTAAGAATGA+AGG | - | chr7.1:9630602-9630621 | MS.gene007587:intron | 45.0% |
| !!! | CCTTTCCCAGATTTTGGTTG+AGG | + | chr7.1:9629469-9629488 | None:intergenic | 45.0% |
| !!! | TTTTTATTTATTAATGTATT+TGG | - | chr7.1:9629180-9629199 | MS.gene007587:intron | 5.0% |
| AAACGGCCCATGTGAATGGT+GGG | + | chr7.1:9631178-9631197 | None:intergenic | 50.0% | |
| GCATTTAAAGGAGGTGGAGG+AGG | + | chr7.1:9630710-9630729 | None:intergenic | 50.0% | |
| TAAACGGCCCATGTGAATGG+TGG | + | chr7.1:9631179-9631198 | None:intergenic | 50.0% | |
| TTGGACAAAACCCCCTCCAA+AGG | + | chr7.1:9630927-9630946 | None:intergenic | 50.0% | |
| ! | AGATTAGGAGCCTTTGGAGG+GGG | - | chr7.1:9630914-9630933 | MS.gene007587:intron | 50.0% |
| ! | AGGTGATGATGTATGGGTGG+TGG | + | chr7.1:9629728-9629747 | None:intergenic | 50.0% |
| ! | GAAGACGAGTTCGGTGGATA+GGG | + | chr7.1:9631447-9631466 | None:intergenic | 50.0% |
| ! | GGTGATGATGTATGGGTGGT+GGG | + | chr7.1:9629727-9629746 | None:intergenic | 50.0% |
| !! | GAACCAAAAGGTGCCCTATG+AGG | + | chr7.1:9630752-9630771 | None:intergenic | 50.0% |
| !! | TTTGGAGGGGGTTTTGTCCA+AGG | - | chr7.1:9630926-9630945 | MS.gene007587:CDS | 50.0% |
| CTATCGGAAGACGAGTTCGG+TGG | + | chr7.1:9631453-9631472 | None:intergenic | 55.0% | |
| GGGACCCAAACCGGAAAAGA+AGG | + | chr7.1:9631002-9631021 | None:intergenic | 55.0% | |
| ! | GCTGCATTGACAGGGGAACA+TGG | - | chr7.1:9630468-9630487 | MS.gene007587:intron | 55.0% |
| ! | GGAAGACGAGTTCGGTGGAT+AGG | + | chr7.1:9631448-9631467 | None:intergenic | 55.0% |
| ! | GGAGGTGGAGGAGGCGTGAG+AGG | + | chr7.1:9630701-9630720 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 9629007 | 9631472 | 9629007 | ID=MS.gene007587 |
| chr7.1 | mRNA | 9629007 | 9631472 | 9629007 | ID=MS.gene007587.t1;Parent=MS.gene007587 |
| chr7.1 | exon | 9631408 | 9631472 | 9631408 | ID=MS.gene007587.t1.exon1;Parent=MS.gene007587.t1 |
| chr7.1 | CDS | 9631408 | 9631472 | 9631408 | ID=cds.MS.gene007587.t1;Parent=MS.gene007587.t1 |
| chr7.1 | exon | 9630918 | 9631014 | 9630918 | ID=MS.gene007587.t1.exon2;Parent=MS.gene007587.t1 |
| chr7.1 | CDS | 9630918 | 9631014 | 9630918 | ID=cds.MS.gene007587.t1;Parent=MS.gene007587.t1 |
| chr7.1 | exon | 9629736 | 9629913 | 9629736 | ID=MS.gene007587.t1.exon3;Parent=MS.gene007587.t1 |
| chr7.1 | CDS | 9629736 | 9629913 | 9629736 | ID=cds.MS.gene007587.t1;Parent=MS.gene007587.t1 |
| chr7.1 | exon | 9629007 | 9629077 | 9629007 | ID=MS.gene007587.t1.exon4;Parent=MS.gene007587.t1 |
| chr7.1 | CDS | 9629007 | 9629077 | 9629007 | ID=cds.MS.gene007587.t1;Parent=MS.gene007587.t1 |
| Gene Sequence |
| Protein sequence |
