AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007609

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007609.t1 MTR_7g103340 99.306 144 1 0 1 144 1 144 1.71e-102 293
MS.gene007609.t1 MTR_1g061660 64.828 145 45 3 1 144 1 140 3.84e-57 179
MS.gene007609.t1 MTR_8g468210 45.312 128 61 1 21 148 44 162 1.54e-31 114
MS.gene007609.t1 MTR_6g007647 61.111 90 28 1 62 144 32 121 1.38e-29 108
MS.gene007609.t1 MTR_6g007647 61.111 90 28 1 62 144 66 155 1.73e-29 109
MS.gene007609.t1 MTR_5g039000 50.505 99 49 0 51 149 65 163 7.12e-29 107
MS.gene007609.t1 MTR_3g080100 55.914 93 41 0 56 148 13 105 1.63e-28 105
MS.gene007609.t1 MTR_3g080100 55.914 93 41 0 56 148 52 144 3.85e-28 105
MS.gene007609.t1 MTR_6g011610 55.682 88 39 0 62 149 95 182 3.92e-28 105
MS.gene007609.t1 MTR_6g011610 55.682 88 39 0 62 149 76 163 4.96e-28 105
MS.gene007609.t1 MTR_4g107650 58.889 90 30 1 62 144 94 183 3.20e-27 104
MS.gene007609.t1 MTR_8g089895 55.172 87 39 0 62 148 53 139 4.16e-27 103
MS.gene007609.t1 MTR_7g010020 55.769 104 38 2 51 146 67 170 8.34e-27 102
MS.gene007609.t1 MTR_3g086790 47.748 111 56 1 41 149 36 146 1.31e-26 102
MS.gene007609.t1 MTR_5g038280 54.762 84 38 0 63 146 87 170 2.06e-24 96.7
MS.gene007609.t1 MTR_3g092150 51.765 85 41 0 65 149 40 124 5.94e-24 94.0
MS.gene007609.t1 MTR_8g469430 52.809 89 35 1 63 144 89 177 2.44e-22 90.5
MS.gene007609.t1 MTR_8g026960 50.000 82 34 1 67 141 38 119 9.04e-21 85.5
MS.gene007609.t1 MTR_4g097600 47.191 89 47 0 56 144 120 208 1.02e-18 80.9
MS.gene007609.t1 MTR_5g019680 51.316 76 37 0 63 138 53 128 1.55e-17 76.3
MS.gene007609.t1 MTR_5g019650 55.224 67 30 0 63 129 53 119 3.14e-17 75.9
MS.gene007609.t1 MTR_4g100550 46.341 82 44 0 63 144 120 201 4.14e-17 76.6
MS.gene007609.t1 MTR_1g054285 43.820 89 50 0 56 144 147 235 7.55e-17 75.9
MS.gene007609.t1 MTR_1g017090 42.857 98 56 0 47 144 114 211 9.73e-17 75.5
MS.gene007609.t1 MTR_7g093430 43.678 87 49 0 58 144 155 241 2.48e-16 74.7
MS.gene007609.t1 MTR_5g014890 44.944 89 48 1 56 144 117 204 2.70e-15 71.6
MS.gene007609.t1 MTR_5g013010 46.341 82 44 0 63 144 136 217 3.23e-15 71.6
MS.gene007609.t1 MTR_2g061030 41.489 94 55 0 51 144 188 281 3.39e-15 72.0
MS.gene007609.t1 MTR_4g084750 42.105 95 54 1 54 148 57 150 1.09e-14 68.6
MS.gene007609.t1 MTR_8g006705 43.902 82 46 0 63 144 146 227 3.21e-14 68.9
MS.gene007609.t1 MTR_4g126900 44.304 79 44 0 66 144 91 169 2.33e-13 65.5
MS.gene007609.t1 MTR_1g101280 38.889 90 52 1 61 147 54 143 1.13e-12 65.1
MS.gene007609.t1 MTR_2g088470 37.778 90 53 1 61 147 65 154 3.79e-12 63.5
MS.gene007609.t1 MTR_3g103590 39.535 86 51 1 50 135 133 217 7.39e-12 62.4
MS.gene007609.t1 MTR_5g029320 37.624 101 60 1 51 148 77 177 7.57e-12 62.8
MS.gene007609.t1 MTR_6g477820 42.222 90 50 1 61 148 28 117 1.24e-11 62.0
MS.gene007609.t1 MTR_2g038625 39.000 100 59 1 49 148 70 167 1.98e-11 60.1
MS.gene007609.t1 MTR_2g038580 39.000 100 59 1 49 148 70 167 1.98e-11 60.1
MS.gene007609.t1 MTR_2g101720 42.308 78 45 0 66 143 145 222 3.51e-11 60.8
MS.gene007609.t1 MTR_5g013010 53.846 52 24 0 63 114 136 187 5.67e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007609.t1 AT5G03790 58.394 137 46 3 16 144 25 158 1.58e-43 144
MS.gene007609.t1 AT5G03790 58.394 137 46 3 16 144 25 158 2.12e-43 142
MS.gene007609.t1 AT2G36610 48.077 156 63 3 7 144 5 160 4.98e-37 126
MS.gene007609.t1 AT1G69780 59.770 87 35 0 56 142 78 164 1.92e-29 109
MS.gene007609.t1 AT5G15150 53.465 101 45 1 51 149 101 201 1.88e-28 107
MS.gene007609.t1 AT5G65310 55.172 87 39 0 62 148 53 139 8.99e-28 105
MS.gene007609.t1 AT5G65310 55.172 87 39 0 62 148 71 157 1.03e-27 105
MS.gene007609.t1 AT2G22430 57.471 87 37 0 62 148 61 147 5.43e-27 103
MS.gene007609.t1 AT3G01470 66.197 71 24 0 62 132 67 137 8.83e-27 102
MS.gene007609.t1 AT4G40060 50.450 111 46 2 33 134 20 130 1.53e-26 102
MS.gene007609.t1 AT3G01220 49.074 108 51 2 38 141 58 165 7.07e-25 97.4
MS.gene007609.t1 AT1G26960 52.174 92 44 0 51 142 59 150 3.04e-24 95.1
MS.gene007609.t1 AT2G46680 45.556 90 49 0 57 146 26 115 6.54e-24 94.4
MS.gene007609.t1 AT2G46680 45.556 90 49 0 57 146 26 115 6.65e-24 94.4
MS.gene007609.t1 AT4G36740 52.809 89 42 0 56 144 48 136 6.08e-23 90.9
MS.gene007609.t1 AT4G36740 52.809 89 42 0 56 144 49 137 6.83e-23 90.9
MS.gene007609.t1 AT3G61890 48.837 86 37 1 66 144 33 118 7.61e-22 88.2
MS.gene007609.t1 AT1G27045 57.971 69 29 0 63 131 25 93 2.77e-20 83.2
MS.gene007609.t1 AT1G27045 57.971 69 29 0 63 131 25 93 2.77e-20 83.2
MS.gene007609.t1 AT1G27045 57.971 69 29 0 63 131 68 136 2.92e-20 84.0
MS.gene007609.t1 AT1G27045 57.971 69 29 0 63 131 17 85 2.93e-20 82.8
MS.gene007609.t1 AT1G27045 43.966 116 55 4 19 131 28 136 4.90e-20 84.0
MS.gene007609.t1 AT2G18550 39.831 118 70 1 27 144 26 142 8.60e-20 82.8
MS.gene007609.t1 AT5G66700 55.556 72 32 0 63 134 71 142 9.04e-19 80.1
MS.gene007609.t1 AT5G06710 43.750 96 54 0 49 144 176 271 3.68e-17 77.4
MS.gene007609.t1 AT5G53980 44.048 84 47 0 61 144 9 92 5.93e-17 73.6
MS.gene007609.t1 AT4G16780 42.697 89 50 1 56 144 123 210 2.26e-15 72.0
MS.gene007609.t1 AT2G22800 46.341 82 44 0 63 144 113 194 3.65e-15 71.2
MS.gene007609.t1 AT5G47370 41.573 89 52 0 56 144 123 211 5.19e-15 70.9
MS.gene007609.t1 AT3G60390 41.573 89 52 0 56 144 155 243 7.51e-15 70.9
MS.gene007609.t1 AT2G01430 45.055 91 50 0 56 146 132 222 1.23e-14 69.7
MS.gene007609.t1 AT4G37790 43.023 86 49 0 63 148 126 211 1.42e-14 69.7
MS.gene007609.t1 AT2G44910 43.902 82 46 0 63 144 163 244 1.49e-14 70.1
MS.gene007609.t1 AT4G17460 40.909 88 52 0 57 144 129 216 1.56e-14 69.7
MS.gene007609.t1 AT3G61150 36.364 99 61 1 51 147 99 197 1.61e-13 67.8
MS.gene007609.t1 AT1G79840 41.573 89 50 1 57 143 96 184 2.35e-13 67.0
MS.gene007609.t1 AT1G79840 41.573 89 50 1 57 143 96 184 2.48e-13 67.0
MS.gene007609.t1 AT1G79840 41.573 89 50 1 57 143 38 126 2.69e-13 67.0
MS.gene007609.t1 AT1G79840 41.573 89 50 1 57 143 38 126 2.69e-13 67.0
MS.gene007609.t1 AT1G79840 41.573 89 50 1 57 143 125 213 2.74e-13 67.0
MS.gene007609.t1 AT1G79840 41.573 89 50 1 57 143 96 184 2.78e-13 67.0
MS.gene007609.t1 AT4G04890 35.955 89 57 0 59 147 61 149 1.56e-12 64.7
MS.gene007609.t1 AT4G04890 35.955 89 57 0 59 147 61 149 1.56e-12 64.7
MS.gene007609.t1 AT5G06710 48.485 66 34 0 49 114 176 241 1.57e-12 63.9
MS.gene007609.t1 AT1G73360 45.882 85 44 1 61 143 31 115 2.02e-12 64.3
MS.gene007609.t1 AT1G70920 38.614 101 62 0 48 148 54 154 1.89e-11 60.1
MS.gene007609.t1 AT1G70920 35.433 127 76 2 22 148 4 124 2.07e-11 59.7
MS.gene007609.t1 AT5G46880 39.796 98 56 1 50 144 98 195 3.70e-11 60.8
MS.gene007609.t1 AT5G46880 39.796 98 56 1 50 144 98 195 3.70e-11 60.8
MS.gene007609.t1 AT5G46880 39.796 98 56 1 50 144 98 195 3.70e-11 60.8

Find 34 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGCTTCATCTTCCTTTC+AGG 0.091903 7.1:+9854092 None:intergenic
TCCACCTTGTACGCCTATTT+TGG 0.171135 7.1:+9854027 None:intergenic
TTGCTGTTTGGTTCCAAAAT+AGG 0.192526 7.1:-9854040 MS.gene007609:CDS
GATAATTAGGTACCTCTTCT+TGG 0.238895 7.1:+9853928 None:intergenic
GGTCTAACTTTATTTCTTCT+TGG 0.251946 7.1:+9854114 None:intergenic
TTTGGAACCAAACAGCAATT+TGG 0.278055 7.1:+9854045 None:intergenic
CATCATTGGCAGTTTAACTA+TGG 0.300474 7.1:-9852268 MS.gene007609:CDS
TATAACAACACCCCTTATTC+AGG 0.354916 7.1:-9854784 MS.gene007609:intron
AAAGCTTCATCTTCCTTTCA+GGG 0.372499 7.1:+9854093 None:intergenic
AACCTCGCCAAATTGCTGTT+TGG 0.376064 7.1:-9854052 MS.gene007609:CDS
GGAAATGAGTCAACCGTCAT+TGG 0.398063 7.1:-9854255 MS.gene007609:CDS
ATGAAGCTTTCAAGAGAGCT+AGG 0.447660 7.1:-9854080 MS.gene007609:CDS
ATGGATGAAATGAACATTGA+TGG 0.450308 7.1:-9854203 MS.gene007609:CDS
AAGTAACCAGATTGATTCAC+TGG 0.476965 7.1:-9854147 MS.gene007609:CDS
TCTTCTCCAGTGAATCAATC+TGG 0.478388 7.1:+9854141 None:intergenic
AAACAGCAATTTGGCGAGGT+TGG 0.478872 7.1:+9854054 None:intergenic
GGTTCCAAAATAGGCGTACA+AGG 0.492609 7.1:-9854031 MS.gene007609:CDS
ATAGTTGTAGAAGCAGCTTA+AGG 0.494870 7.1:+9854804 None:intergenic
ATGTTCATTTCATCCATAGC+TGG 0.495881 7.1:+9854209 None:intergenic
AGTGAAAGCCTAAAATGGAT+TGG 0.500919 7.1:-9854867 None:intergenic
GACTCAGTATGAGGAACAAA+GGG 0.509615 7.1:+9854829 None:intergenic
GAAATGAGTCAACCGTCATT+GGG 0.510295 7.1:-9854254 MS.gene007609:CDS
AGAATTTGATGTTGTCTCCA+AGG 0.530430 7.1:-9853964 MS.gene007609:CDS
ACAAAGGTTACTTCCAGCTA+TGG 0.541285 7.1:-9854222 MS.gene007609:CDS
CTTAAGGAAGACTCAGTATG+AGG 0.549901 7.1:+9854820 None:intergenic
AAATAAAGTTAGACCCTGAA+AGG 0.563460 7.1:-9854106 MS.gene007609:CDS
TGAAGCTTTCAAGAGAGCTA+GGG 0.584376 7.1:-9854079 MS.gene007609:CDS
AGACTCAGTATGAGGAACAA+AGG 0.595030 7.1:+9854828 None:intergenic
TGTTGTGTCTCACCCAATGA+CGG 0.608704 7.1:+9854242 None:intergenic
AAATAGGCGTACAAGGTGGA+AGG 0.609407 7.1:-9854024 MS.gene007609:CDS
AAAACAGAAACTCCAAGAAG+AGG 0.620624 7.1:-9853940 MS.gene007609:intron
AACCAAACAGCAATTTGGCG+AGG 0.655043 7.1:+9854050 None:intergenic
TCCAAAATAGGCGTACAAGG+TGG 0.664815 7.1:-9854028 MS.gene007609:CDS
CATTGGGTGAGACACAACAA+AGG 0.711095 7.1:-9854238 MS.gene007609:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAGAAAAAAAAG+AGG + chr7.1:9852488-9852507 None:intergenic 10.0%
!! AAAAAAAAAGAAAAAAAAGA+GGG + chr7.1:9852487-9852506 None:intergenic 10.0%
!! CTGTATAAAAAAATTAATTA+TGG - chr7.1:9853960-9853979 MS.gene007609:CDS 10.0%
!! AAAAAAAAGAAAAAAAAGAG+GGG + chr7.1:9852486-9852505 None:intergenic 15.0%
!! AAAAAAATTAATTATGGACA+TGG - chr7.1:9853966-9853985 MS.gene007609:CDS 15.0%
!! AAAAACTTTAACTAAAGAAT+TGG + chr7.1:9854548-9854567 None:intergenic 15.0%
!! AAAAATAGCTAAAAAAACAT+TGG + chr7.1:9852374-9852393 None:intergenic 15.0%
!! AGAAAAAAAAATTGTATGAT+AGG - chr7.1:9852723-9852742 MS.gene007609:intron 15.0%
!! GAAAAAAAAATTGTATGATA+GGG - chr7.1:9852724-9852743 MS.gene007609:intron 15.0%
!! TTATTCAAATTTATTGTCAT+TGG - chr7.1:9852805-9852824 MS.gene007609:intron 15.0%
!!! ATAATTCAACTTCTTTTTAT+AGG + chr7.1:9853344-9853363 None:intergenic 15.0%
!!! GAAAAATAGTAATTTTTGTA+AGG + chr7.1:9853841-9853860 None:intergenic 15.0%
!! AATAATACAACTCTAACAAA+TGG + chr7.1:9853656-9853675 None:intergenic 20.0%
!! CAAAAAATCCAAAGATAATT+AGG + chr7.1:9853193-9853212 None:intergenic 20.0%
!! TATAATGTAGAATATGTGTA+AGG + chr7.1:9853870-9853889 None:intergenic 20.0%
!! TTGACTTATAATGTAGATTA+GGG + chr7.1:9854329-9854348 None:intergenic 20.0%
!!! AATTCAACTTTTTTCCTAAT+AGG - chr7.1:9853448-9853467 MS.gene007609:intron 20.0%
!!! ATTTGAAAACTACTCAATTT+TGG - chr7.1:9852543-9852562 MS.gene007609:intron 20.0%
!!! ATTTTCATTTTGATCATCAT+TGG - chr7.1:9854823-9854842 MS.gene007609:CDS 20.0%
!!! TATCTTTGGATTTTTTGTAT+AGG - chr7.1:9853196-9853215 MS.gene007609:intron 20.0%
!!! TGTTTTTTTTACCTGAATAA+GGG + chr7.1:9852335-9852354 None:intergenic 20.0%
!!! TTATGTGCTTTTTTCTATTT+CGG - chr7.1:9853930-9853949 MS.gene007609:intron 20.0%
!!! TTTGACTTATAATGTAGATT+AGG + chr7.1:9854330-9854349 None:intergenic 20.0%
! AAAAACATTGGAGTATAAAG+AGG + chr7.1:9852362-9852381 None:intergenic 25.0%
! AAAGTTAAGTACTAAAGTAG+TGG - chr7.1:9854516-9854535 MS.gene007609:intron 25.0%
! AACAATTTATGAGATGCATA+TGG - chr7.1:9852660-9852679 MS.gene007609:intron 25.0%
! GTAGATTAGGGATAATAATT+AGG + chr7.1:9854317-9854336 None:intergenic 25.0%
! TAAAAATCACATAATGCAAG+AGG + chr7.1:9853319-9853338 None:intergenic 25.0%
! TACATAAATCAACCATTGTA+GGG + chr7.1:9854012-9854031 None:intergenic 25.0%
! TACTAGTAGTTAGGTATTAA+TGG - chr7.1:9854399-9854418 MS.gene007609:intron 25.0%
! TATTCAGGTAAAAAAAACAC+TGG - chr7.1:9852336-9852355 MS.gene007609:intron 25.0%
!! TGCTTTTCAATTCATATAGA+AGG - chr7.1:9852508-9852527 MS.gene007609:intron 25.0%
!!! ATTTTAGTGTACTAGTAGTT+AGG - chr7.1:9854390-9854409 MS.gene007609:intron 25.0%
!!! GTGTTTTTTTTACCTGAATA+AGG + chr7.1:9852336-9852355 None:intergenic 25.0%
!!! GTTTTTTTTACCTGAATAAG+GGG + chr7.1:9852334-9852353 None:intergenic 25.0%
!!! TATGTGCTTTTTTCTATTTC+GGG - chr7.1:9853931-9853950 MS.gene007609:intron 25.0%
AAAAAAGAGGGGAAATAACT+TGG + chr7.1:9852475-9852494 None:intergenic 30.0%
AAAAAGAGGGGAAATAACTT+GGG + chr7.1:9852474-9852493 None:intergenic 30.0%
AAATAAAGTTAGACCCTGAA+AGG - chr7.1:9852999-9853018 MS.gene007609:intron 30.0%
AAGATCCATTCAGAACTATA+TGG - chr7.1:9854438-9854457 MS.gene007609:intron 30.0%
AGATCCATTCAGAACTATAT+GGG - chr7.1:9854439-9854458 MS.gene007609:intron 30.0%
AGTTAGGTATTAATGGTTTG+AGG - chr7.1:9854406-9854425 MS.gene007609:intron 30.0%
ATGGATGAAATGAACATTGA+TGG - chr7.1:9852902-9852921 MS.gene007609:intron 30.0%
ATTCAGAACTATATGGGATA+TGG - chr7.1:9854445-9854464 MS.gene007609:intron 30.0%
CATAAGTGAGTGTCTAATTA+AGG + chr7.1:9852572-9852591 None:intergenic 30.0%
CCTCAAACTTGAAATGTAAT+AGG + chr7.1:9853537-9853556 None:intergenic 30.0%
CTACATAAATCAACCATTGT+AGG + chr7.1:9854013-9854032 None:intergenic 30.0%
GAGAAATGGTATGAATATGA+TGG - chr7.1:9852767-9852786 MS.gene007609:intron 30.0%
GGATAATAATTAGGCAATAC+AGG + chr7.1:9854308-9854327 None:intergenic 30.0%
TGTTGAATGCTACTATTTGT+TGG + chr7.1:9854176-9854195 None:intergenic 30.0%
TTTAGGTAGAAAGAAAAGGA+CGG - chr7.1:9854582-9854601 MS.gene007609:intron 30.0%
! GGTCTAACTTTATTTCTTCT+TGG + chr7.1:9852994-9853013 None:intergenic 30.0%
!! AAGAGGTACCTAATTATCTT+TGG - chr7.1:9853182-9853201 MS.gene007609:intron 30.0%
!! ATATCCCATATAGTTCTGAA+TGG + chr7.1:9854446-9854465 None:intergenic 30.0%
!! CCTATTACATTTCAAGTTTG+AGG - chr7.1:9853534-9853553 MS.gene007609:intron 30.0%
!! TGCTTTTAGGTAGAAAGAAA+AGG - chr7.1:9854578-9854597 MS.gene007609:intron 30.0%
!!! ATGTGCTTTTTTCTATTTCG+GGG - chr7.1:9853932-9853951 MS.gene007609:intron 30.0%
!!! TTGGATTTTTTGTATAGGCT+AGG - chr7.1:9853201-9853220 MS.gene007609:intron 30.0%
AAAACAGAAACTCCAAGAAG+AGG - chr7.1:9853165-9853184 MS.gene007609:intron 35.0%
AAAGCTTCATCTTCCTTTCA+GGG + chr7.1:9853015-9853034 None:intergenic 35.0%
AAATCAGACTTACGCCTATT+AGG + chr7.1:9853465-9853484 None:intergenic 35.0%
AACCATTGTAGGGTAATACT+AGG + chr7.1:9854002-9854021 None:intergenic 35.0%
AACCTAGTATTACCCTACAA+TGG - chr7.1:9853997-9854016 MS.gene007609:CDS 35.0%
AAGAAATGAAGGCAGAGAAA+TGG - chr7.1:9852753-9852772 MS.gene007609:intron 35.0%
ACACAGGTTATGAAGTTGAA+GGG - chr7.1:9854053-9854072 MS.gene007609:CDS 35.0%
AGAATTTGATGTTGTCTCCA+AGG - chr7.1:9853141-9853160 MS.gene007609:intron 35.0%
ATAGGTCTCTAAGCTTCTAA+AGG + chr7.1:9853519-9853538 None:intergenic 35.0%
ATAGTTGTAGAAGCAGCTTA+AGG + chr7.1:9852304-9852323 None:intergenic 35.0%
ATGCAGTAGTGATTCAAGTA+AGG - chr7.1:9854490-9854509 MS.gene007609:intron 35.0%
ATGTTCATTTCATCCATAGC+TGG + chr7.1:9852899-9852918 None:intergenic 35.0%
CATCATTGGCAGTTTAACTA+TGG - chr7.1:9854837-9854856 MS.gene007609:CDS 35.0%
GATAATTAGGTACCTCTTCT+TGG + chr7.1:9853180-9853199 None:intergenic 35.0%
GTATGCTGGAAAATTAGGAA+TGG - chr7.1:9852829-9852848 MS.gene007609:intron 35.0%
TAGGGTGTACAAAGAAATGA+AGG - chr7.1:9852742-9852761 MS.gene007609:intron 35.0%
TATAACAACACCCCTTATTC+AGG - chr7.1:9852321-9852340 MS.gene007609:intron 35.0%
TGCAGTAGTGATTCAAGTAA+GGG - chr7.1:9854491-9854510 MS.gene007609:intron 35.0%
TTATTGTCATTGGTGTATGC+TGG - chr7.1:9852815-9852834 MS.gene007609:intron 35.0%
TTGGTGTATGCTGGAAAATT+AGG - chr7.1:9852824-9852843 MS.gene007609:intron 35.0%
! AAGTAACCAGATTGATTCAC+TGG - chr7.1:9852958-9852977 MS.gene007609:intron 35.0%
! AGCAATCAGGTGGTAATTTT+AGG - chr7.1:9854087-9854106 MS.gene007609:CDS 35.0%
! ATAATGCAAGAGGTACATGA+AGG + chr7.1:9853309-9853328 None:intergenic 35.0%
! ATATTCTAGAGAGAGAGAGA+AGG + chr7.1:9852426-9852445 None:intergenic 35.0%
! TAATGCAAGAGGTACATGAA+GGG + chr7.1:9853308-9853327 None:intergenic 35.0%
! TTGTTATTGTATCCCTGATC+TGG + chr7.1:9854206-9854225 None:intergenic 35.0%
! TTTGGAACCAAACAGCAATT+TGG + chr7.1:9853063-9853082 None:intergenic 35.0%
!! TTGCTGTTTGGTTCCAAAAT+AGG - chr7.1:9853065-9853084 MS.gene007609:intron 35.0%
!! TTGGAGTTTCTGTTTTTCCT+TGG + chr7.1:9853161-9853180 None:intergenic 35.0%
!! TTTCTACGTACTCTGCTTTT+AGG - chr7.1:9854565-9854584 MS.gene007609:intron 35.0%
AAGCTAAAAGAGCAATCAGG+TGG - chr7.1:9854077-9854096 MS.gene007609:CDS 40.0%
ACAAAGGTTACTTCCAGCTA+TGG - chr7.1:9852883-9852902 MS.gene007609:intron 40.0%
ACAGTGATGAGCTGAAATGT+TGG - chr7.1:9854674-9854693 MS.gene007609:intron 40.0%
AGACTCAGTATGAGGAACAA+AGG + chr7.1:9852280-9852299 None:intergenic 40.0%
ATGAAGCTTTCAAGAGAGCT+AGG - chr7.1:9853025-9853044 MS.gene007609:intron 40.0%
CACACAGGTTATGAAGTTGA+AGG - chr7.1:9854052-9854071 MS.gene007609:CDS 40.0%
CTTAAGGAAGACTCAGTATG+AGG + chr7.1:9852288-9852307 None:intergenic 40.0%
GAAAGCTTCATCTTCCTTTC+AGG + chr7.1:9853016-9853035 None:intergenic 40.0%
GAAATGAGTCAACCGTCATT+GGG - chr7.1:9852851-9852870 MS.gene007609:intron 40.0%
GACTCAGTATGAGGAACAAA+GGG + chr7.1:9852279-9852298 None:intergenic 40.0%
GGAAAGCTAAAAGAGCAATC+AGG - chr7.1:9854074-9854093 MS.gene007609:CDS 40.0%
TCTTCTCCAGTGAATCAATC+TGG + chr7.1:9852967-9852986 None:intergenic 40.0%
TGAAGCTTTCAAGAGAGCTA+GGG - chr7.1:9853026-9853045 MS.gene007609:intron 40.0%
! ACAGTAGAAAGCACATCAGA+AGG - chr7.1:9854131-9854150 MS.gene007609:CDS 40.0%
!! TCTTTCTCTCTGAAACAACG+TGG + chr7.1:9854635-9854654 None:intergenic 40.0%
AAACAGCAATTTGGCGAGGT+TGG + chr7.1:9853054-9853073 None:intergenic 45.0%
AAATAGGCGTACAAGGTGGA+AGG - chr7.1:9853081-9853100 MS.gene007609:intron 45.0%
AACCAAACAGCAATTTGGCG+AGG + chr7.1:9853058-9853077 None:intergenic 45.0%
AGAGAAAGAGCAGAGGATTC+AGG - chr7.1:9854646-9854665 MS.gene007609:intron 45.0%
CAACAAGCTGTTCCAGATCA+GGG - chr7.1:9854191-9854210 MS.gene007609:CDS 45.0%
CATTGGGTGAGACACAACAA+AGG - chr7.1:9852867-9852886 MS.gene007609:intron 45.0%
GGAAATGAGTCAACCGTCAT+TGG - chr7.1:9852850-9852869 MS.gene007609:intron 45.0%
GGTTCCAAAATAGGCGTACA+AGG - chr7.1:9853074-9853093 MS.gene007609:intron 45.0%
GTTTCAGAGAGAAAGAGCAG+AGG - chr7.1:9854639-9854658 MS.gene007609:intron 45.0%
TCAACAAGCTGTTCCAGATC+AGG - chr7.1:9854190-9854209 MS.gene007609:CDS 45.0%
TCCAAAATAGGCGTACAAGG+TGG - chr7.1:9853077-9853096 MS.gene007609:intron 45.0%
TGCCTCCTAATCAATGTCAC+TGG - chr7.1:9854282-9854301 MS.gene007609:intron 45.0%
TGTTGTGTCTCACCCAATGA+CGG + chr7.1:9852866-9852885 None:intergenic 45.0%
! AACCTCGCCAAATTGCTGTT+TGG - chr7.1:9853053-9853072 MS.gene007609:intron 45.0%
! ACAGGCCAGTGACATTGATT+AGG + chr7.1:9854290-9854309 None:intergenic 45.0%
! TCAATGTGCTCTGAACACAC+AGG - chr7.1:9854037-9854056 MS.gene007609:CDS 45.0%
! TCCACCTTGTACGCCTATTT+TGG + chr7.1:9853081-9853100 None:intergenic 45.0%
!!! AAATTTTATGTTTTTTTTTT+CGG + chr7.1:9853383-9853402 None:intergenic 5.0%
!!! TATTTATTTTTTTACTTTTT+TGG + chr7.1:9853593-9853612 None:intergenic 5.0%
AAGAGCAGAGGATTCAGGAC+AGG - chr7.1:9854651-9854670 MS.gene007609:intron 50.0%
! GGCCAGTGACATTGATTAGG+AGG + chr7.1:9854287-9854306 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 9852252 9854875 9852252 ID=MS.gene007609
chr7.1 mRNA 9852252 9854875 9852252 ID=MS.gene007609.t1;Parent=MS.gene007609
chr7.1 exon 9854785 9854875 9854785 ID=MS.gene007609.t1.exon1;Parent=MS.gene007609.t1
chr7.1 CDS 9854785 9854875 9854785 ID=cds.MS.gene007609.t1;Parent=MS.gene007609.t1
chr7.1 exon 9853941 9854281 9853941 ID=MS.gene007609.t1.exon2;Parent=MS.gene007609.t1
chr7.1 CDS 9853941 9854281 9853941 ID=cds.MS.gene007609.t1;Parent=MS.gene007609.t1
chr7.1 exon 9852252 9852311 9852252 ID=MS.gene007609.t1.exon3;Parent=MS.gene007609.t1
chr7.1 CDS 9852252 9852311 9852252 ID=cds.MS.gene007609.t1;Parent=MS.gene007609.t1
Gene Sequence

>MS.gene007609

ATGGATTGGAATGAGAGCACAAGACCCTTTGTTCCTCATACTGAGTCTTCCTTAAGCTGCTTCTACAACTATAACAACACCCCTTATTCAGGTAAAAAAAACACTGGCCTCTTTATACTCCAATGTTTTTTTAGCTATTTTTACTCATTTTAGTTTACAAATCTTGAGTCACCTTCTCTCTCTCTCTAGAATATTGCACATGAATTTATTGACTTGAATCCCAAGTTATTTCCCCTCTTTTTTTTCTTTTTTTTTTTGCTTTTCAATTCATATAGAAGGCAAAACATATATATTTGAAAACTACTCAATTTTGGCAACCTTAATTAGACACTCACTTATGTATATACACTTTTGTGTTATTTAATTTTATAGATAACATTAGATAAAAACAAAACAAAAAGAAAGACAAACAATTTATGAGATGCATATGGTGATGATGTGATGAAAAAGTGTAAAAAGAAAATTAGAAAAAGAAAAAAAAATTGTATGATAGGGTGTACAAAGAAATGAAGGCAGAGAAATGGTATGAATATGATGGTGATGTGATATATATTTATTCAAATTTATTGTCATTGGTGTATGCTGGAAAATTAGGAATGGAAATGAGTCAACCGTCATTGGGTGAGACACAACAAAGGTTACTTCCAGCTATGGATGAAATGAACATTGATGGAAACAATTACAGAGAGAAGAAGAAGAGATTAACAAGTAACCAGATTGATTCACTGGAGAAGAGTTTCCAAGAAGAAATAAAGTTAGACCCTGAAAGGAAGATGAAGCTTTCAAGAGAGCTAGGGCTCCAACCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTACAAGGTGGAAGGCTAAGCAACTTGAACACTTGTATGATGTTCTCAAACAAGAATTTGATGTTGTCTCCAAGGAAAAACAGAAACTCCAAGAAGAGGTACCTAATTATCTTTGGATTTTTTGTATAGGCTAGGATGAATTTGAATGAAATGAGATATATAACATCTATTTTTTATTATGTAACTATAATCTCACGTATTTGTTCATGTATCTCTCCCTTCATGTACCTCTTGCATTATGTGATTTTTAAGCCTATAAAAAGAAGTTGAATTATCAATAAATATTAGAGACCGAAAAAAAAAACATAAAATTTGTATCTAAATTGAAGATTAGTTTTTTGTCTCTAATTTCTATCAAAAATTCAACTTTTTTCCTAATAGGCGTAAGTCTGATTTTTTGTTTGAACTATGTATATGTTATGCTTTGCCTTTAGAAGCTTAGAGACCTATTACATTTCAAGTTTGAGGATAATGTTCATCTTTCTTTTGTGTTGATTTTTGCCAAAAAAGTAAAAAAATAAATATACACACACACAAACAACATATCACTTCTTATAATCAATACCATTTGTTAGAGTTGTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTGTTATTATTATTATTATTATTATGTCATACAAATGCAATTATACATGAGAGTGAAAAATATATTGTGTAATTAATTAATATTTTCCTTACAAAAATTACTATTTTTCTTATTTCCTTACACATATTCTACATTATATATATGTTTTACACTTTGTTGTATTTAAAAATATAAAGAATTATGTGCTTTTTTCTATTTCGGGGATTAACTGTATAAAAAAATTAATTATGGACATGGTGTTCTTCAACCTAGTATTACCCTACAATGGTTGATTTATGTAGCTGATCAATGTGCTCTGAACACACAGGTTATGAAGTTGAAGGGAAAGCTAAAAGAGCAATCAGGTGGTAATTTTAGGACACAAACATATGTTGAAGAAACAGTAGAAAGCACATCAGAAGGTCTACGTTGTTCTAACAAACCAACAAATAGTAGCATTCAACAAGCTGTTCCAGATCAGGGATACAATAACAACAACAACAACAACAGTAGTACTTTCATTGTTGAAGATTTTAATAACTCAGTTTCAATGCCTCCTAATCAATGTCACTGGCCTGTATTGCCTAATTATTATCCCTAATCTACATTATAAGTCAAAGTAGTTTTAAGTACTCTATGAGTAGTGAGTGACTCAGTTAATTTTAGTGTACTAGTAGTTAGGTATTAATGGTTTGAGGACTGACATTAAGATCCATTCAGAACTATATGGGATATGGTAGTTATGAGTTATGAGTCATAATGCAGTAGTGATTCAAGTAAGGGTAAAAGTTAAGTACTAAAGTAGTGGTAGTTTCCAATTCTTTAGTTAAAGTTTTTCTACGTACTCTGCTTTTAGGTAGAAAGAAAAGGACGGTAGTTGTAATGCACACTATTTTTTTTACCACGTTGTTTCAGAGAGAAAGAGCAGAGGATTCAGGACAGGACAGTGATGAGCTGAAATGTTGGATTTTTCTTTCTTGTTTTATTCTAAAACAAAGATGTGAAAACTATGTAGTGTGACAAAAATACTAGTGTGCAAAATAAATAGTAACATTGTTTTATGTTAGCTATTGTTTGTTATGTAGCAAGAGAATTTTCATTTTGATCATCATTGGCAGTTTAACTATGGAATCTCATTTCTCTAA
Protein sequence

>MS.gene007609.t1

MDWNESTRPFVPHTESSLSCFYNYNNTPYSGMEMSQPSLGETQQRLLPAMDEMNIDGNNYREKKKRLTSNQIDSLEKSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDVLKQEFDVVSKEKQKLQEEQENFHFDHHWQFNYGISFL