AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007611

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007611.t1 MTR_7g103340 97.863 234 3 1 1 234 1 232 2.03e-171 471
MS.gene007611.t1 MTR_1g061660 55.466 247 82 10 1 234 1 232 2.17e-75 228
MS.gene007611.t1 MTR_8g468210 45.652 138 59 2 21 151 44 172 9.09e-33 120
MS.gene007611.t1 MTR_6g007647 58.824 102 35 1 62 156 32 133 6.56e-32 117
MS.gene007611.t1 MTR_6g007647 58.824 102 35 1 62 156 66 167 8.03e-32 118
MS.gene007611.t1 MTR_5g039000 50.926 108 46 1 51 151 65 172 3.77e-30 113
MS.gene007611.t1 MTR_4g107650 48.889 135 49 4 62 176 94 228 6.63e-30 114
MS.gene007611.t1 MTR_3g080100 47.761 134 68 2 56 187 13 146 8.73e-30 110
MS.gene007611.t1 MTR_3g080100 47.761 134 68 2 56 187 52 185 1.81e-29 111
MS.gene007611.t1 MTR_3g086790 46.774 124 57 2 41 155 36 159 1.44e-28 109
MS.gene007611.t1 MTR_7g010020 48.462 130 63 2 51 176 67 196 1.71e-28 108
MS.gene007611.t1 MTR_6g011610 55.435 92 41 0 62 153 95 186 4.47e-28 107
MS.gene007611.t1 MTR_6g011610 55.435 92 41 0 62 153 76 167 4.91e-28 107
MS.gene007611.t1 MTR_8g089895 52.475 101 41 1 62 155 53 153 1.73e-27 107
MS.gene007611.t1 MTR_5g038280 55.670 97 36 1 63 152 87 183 1.01e-26 105
MS.gene007611.t1 MTR_8g469430 52.577 97 39 1 63 152 89 185 7.42e-25 99.8
MS.gene007611.t1 MTR_3g092150 35.519 183 92 5 65 228 40 215 2.79e-24 97.1
MS.gene007611.t1 MTR_8g026960 42.857 119 56 3 67 175 38 154 4.53e-21 88.6
MS.gene007611.t1 MTR_4g097600 47.368 95 50 0 56 150 120 214 3.20e-20 87.0
MS.gene007611.t1 MTR_5g019680 47.826 92 48 0 63 154 53 144 1.57e-19 83.6
MS.gene007611.t1 MTR_4g100550 45.455 88 48 0 63 150 120 207 4.12e-18 81.3
MS.gene007611.t1 MTR_1g054285 42.105 95 55 0 56 150 147 241 1.49e-17 80.1
MS.gene007611.t1 MTR_5g019650 47.475 99 45 2 63 154 53 151 1.98e-17 78.6
MS.gene007611.t1 MTR_1g017090 42.308 104 60 0 47 150 114 217 2.94e-17 79.0
MS.gene007611.t1 MTR_7g093430 41.935 93 54 0 58 150 155 247 8.03e-17 78.2
MS.gene007611.t1 MTR_5g013010 45.455 88 48 0 63 150 136 223 1.62e-16 77.0
MS.gene007611.t1 MTR_5g014890 44.681 94 51 1 56 149 117 209 3.07e-16 75.9
MS.gene007611.t1 MTR_2g061030 40.000 100 60 0 51 150 188 287 4.04e-16 76.6
MS.gene007611.t1 MTR_4g084750 42.268 97 55 1 54 150 57 152 1.93e-15 72.4
MS.gene007611.t1 MTR_8g006705 43.182 88 50 0 63 150 146 233 2.18e-15 73.9
MS.gene007611.t1 MTR_4g126900 44.048 84 47 0 66 149 91 174 2.93e-14 69.7
MS.gene007611.t1 MTR_5g029320 36.937 111 64 2 51 158 77 184 1.30e-11 64.3
MS.gene007611.t1 MTR_6g477820 41.000 100 54 2 61 158 28 124 1.39e-11 63.9
MS.gene007611.t1 MTR_2g101720 41.463 82 48 0 66 147 145 226 1.85e-11 63.5
MS.gene007611.t1 MTR_3g103590 39.535 86 51 1 50 135 133 217 2.68e-11 62.4
MS.gene007611.t1 MTR_2g038625 38.235 102 61 1 49 150 70 169 3.08e-11 61.2
MS.gene007611.t1 MTR_2g038580 38.235 102 61 1 49 150 70 169 3.08e-11 61.2
MS.gene007611.t1 MTR_5g013010 53.846 52 24 0 63 114 136 187 7.19e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007611.t1 AT5G03790 52.299 174 64 4 16 174 25 194 4.19e-47 156
MS.gene007611.t1 AT5G03790 57.447 141 49 2 16 148 25 162 1.25e-43 145
MS.gene007611.t1 AT2G36610 47.879 165 68 3 10 156 8 172 9.20e-40 135
MS.gene007611.t1 AT1G69780 48.201 139 53 3 56 187 78 204 6.73e-32 118
MS.gene007611.t1 AT5G65310 55.914 93 41 0 62 154 71 163 7.87e-29 110
MS.gene007611.t1 AT5G65310 55.914 93 41 0 62 154 53 145 8.91e-29 110
MS.gene007611.t1 AT2G22430 57.143 98 35 1 62 152 61 158 1.12e-28 110
MS.gene007611.t1 AT5G15150 53.846 104 46 1 51 152 101 204 1.48e-28 110
MS.gene007611.t1 AT4G40060 45.588 136 58 3 33 152 20 155 5.28e-28 108
MS.gene007611.t1 AT3G01470 54.545 99 38 1 62 153 67 165 8.74e-28 107
MS.gene007611.t1 AT3G01220 48.000 125 54 3 38 151 58 182 1.95e-26 103
MS.gene007611.t1 AT1G26960 50.000 108 47 1 51 151 59 166 2.57e-26 102
MS.gene007611.t1 AT4G36740 52.577 97 46 0 56 152 49 145 6.33e-25 98.2
MS.gene007611.t1 AT4G36740 52.577 97 46 0 56 152 48 144 6.39e-25 98.2
MS.gene007611.t1 AT2G46680 46.364 110 48 2 47 149 20 125 9.31e-25 99.0
MS.gene007611.t1 AT2G46680 46.296 108 47 2 47 147 20 123 8.99e-24 96.3
MS.gene007611.t1 AT2G18550 42.857 126 63 1 63 188 61 177 3.07e-23 94.0
MS.gene007611.t1 AT1G27045 45.669 127 57 4 48 164 50 174 9.42e-23 92.8
MS.gene007611.t1 AT1G27045 45.669 127 57 4 48 164 7 131 1.26e-22 91.3
MS.gene007611.t1 AT1G27045 45.669 127 57 4 48 164 7 131 1.26e-22 91.3
MS.gene007611.t1 AT3G61890 47.778 90 40 1 66 148 33 122 1.65e-22 92.4
MS.gene007611.t1 AT1G27045 46.400 125 55 4 50 164 1 123 1.92e-22 90.5
MS.gene007611.t1 AT5G66700 39.568 139 78 2 63 198 71 206 6.36e-21 87.8
MS.gene007611.t1 AT1G27045 39.007 141 66 4 48 178 50 180 4.32e-20 86.3
MS.gene007611.t1 AT5G53980 44.086 93 52 0 61 153 9 101 3.00e-18 79.0
MS.gene007611.t1 AT5G06710 43.564 101 57 0 49 149 176 276 6.48e-18 81.6
MS.gene007611.t1 AT5G47370 41.489 94 55 0 56 149 123 216 1.25e-16 77.4
MS.gene007611.t1 AT4G16780 42.105 95 54 1 56 150 123 216 1.57e-16 77.0
MS.gene007611.t1 AT2G22800 45.977 87 47 0 63 149 113 199 2.40e-16 76.3
MS.gene007611.t1 AT3G60390 41.053 95 56 0 56 150 155 249 7.54e-16 75.5
MS.gene007611.t1 AT2G44910 43.182 88 50 0 63 150 163 250 1.27e-15 75.1
MS.gene007611.t1 AT2G01430 44.211 95 53 0 56 150 132 226 1.91e-15 73.9
MS.gene007611.t1 AT4G37790 44.318 88 49 0 63 150 126 213 3.56e-15 73.2
MS.gene007611.t1 AT4G17460 39.000 100 61 0 51 150 123 222 4.72e-15 72.8
MS.gene007611.t1 AT1G79840 38.462 104 62 1 57 158 96 199 6.89e-14 70.9
MS.gene007611.t1 AT1G79840 38.462 104 62 1 57 158 125 228 7.29e-14 70.9
MS.gene007611.t1 AT1G79840 38.462 104 62 1 57 158 96 199 8.08e-14 70.5
MS.gene007611.t1 AT1G79840 38.462 104 62 1 57 158 38 141 8.60e-14 70.5
MS.gene007611.t1 AT1G79840 38.462 104 62 1 57 158 38 141 8.60e-14 70.5
MS.gene007611.t1 AT1G79840 38.462 104 62 1 57 158 96 199 1.21e-13 70.1
MS.gene007611.t1 AT1G73360 43.000 100 52 2 61 158 31 127 1.42e-12 67.0
MS.gene007611.t1 AT1G70920 35.659 129 77 2 22 150 4 126 1.47e-12 64.3
MS.gene007611.t1 AT1G70920 35.659 129 77 2 22 150 34 156 1.78e-12 64.7
MS.gene007611.t1 AT5G06710 48.485 66 34 0 49 114 176 241 4.49e-12 64.3
MS.gene007611.t1 AT5G46880 39.773 88 53 0 61 148 112 199 4.66e-11 62.4
MS.gene007611.t1 AT5G46880 39.773 88 53 0 61 148 112 199 4.66e-11 62.4
MS.gene007611.t1 AT5G46880 39.773 88 53 0 61 148 112 199 4.66e-11 62.4
MS.gene007611.t1 AT3G61150 33.333 120 71 2 51 168 99 211 8.27e-11 62.0

Find 47 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGCTTCATCTTCCTTTC+AGG 0.091903 7.3:-10785656 None:intergenic
TCCACCTTGTACGCCTATTT+TGG 0.171135 7.3:-10785721 None:intergenic
TTGCTGTTTGGTTCCAAAAT+AGG 0.192526 7.3:+10785708 MS.gene007611:CDS
GATAATTAGGTACCTCTTCT+TGG 0.238895 7.3:-10785820 None:intergenic
GGTCTAACTTTATTTCTTCT+TGG 0.251946 7.3:-10785634 None:intergenic
TTTGGAACCAAACAGCAATT+TGG 0.278055 7.3:-10785703 None:intergenic
GTAGATTAGGGATAATAATT+AGG 0.330622 7.3:-10786960 None:intergenic
TTGTTATTGTATCCCTGATC+TGG 0.353848 7.3:-10786849 None:intergenic
TATAACAACACCCCTTATTC+AGG 0.354916 7.3:+10784964 MS.gene007611:CDS
AAAGCTTCATCTTCCTTTCA+GGG 0.372499 7.3:-10785655 None:intergenic
AACCTCGCCAAATTGCTGTT+TGG 0.376064 7.3:+10785696 MS.gene007611:CDS
TGTTGAATGCTACTATTTGT+TGG 0.395823 7.3:-10786819 None:intergenic
GGAAATGAGTCAACCGTCAT+TGG 0.398063 7.3:+10785493 MS.gene007611:CDS
TCAACAAGCTGTTCCAGATC+AGG 0.398083 7.3:+10786836 MS.gene007611:CDS
GGATAATAATTAGGCAATAC+AGG 0.433929 7.3:-10786951 None:intergenic
ATGAAGCTTTCAAGAGAGCT+AGG 0.447660 7.3:+10785668 MS.gene007611:CDS
ATGGATGAAATGAACATTGA+TGG 0.450308 7.3:+10785545 MS.gene007611:CDS
ACAGGCCAGTGACATTGATT+AGG 0.461524 7.3:-10786933 None:intergenic
AAGTAACCAGATTGATTCAC+TGG 0.476965 7.3:+10785601 MS.gene007611:CDS
TCTTCTCCAGTGAATCAATC+TGG 0.478388 7.3:-10785607 None:intergenic
AAACAGCAATTTGGCGAGGT+TGG 0.478872 7.3:-10785694 None:intergenic
GGTTCCAAAATAGGCGTACA+AGG 0.492609 7.3:+10785717 MS.gene007611:CDS
ATAGTTGTAGAAGCAGCTTA+AGG 0.494870 7.3:-10784944 None:intergenic
ATGTTCATTTCATCCATAGC+TGG 0.495881 7.3:-10785539 None:intergenic
AGTGAAAGCCTAAAATGGAT+TGG 0.500919 7.3:+10784881 None:intergenic
GACTCAGTATGAGGAACAAA+GGG 0.509615 7.3:-10784919 None:intergenic
GAAATGAGTCAACCGTCATT+GGG 0.510295 7.3:+10785494 MS.gene007611:CDS
AGAATTTGATGTTGTCTCCA+AGG 0.530430 7.3:+10785784 MS.gene007611:CDS
ACAAAGGTTACTTCCAGCTA+TGG 0.541285 7.3:+10785526 MS.gene007611:CDS
CACACAGGTTATGAAGTTGA+AGG 0.545029 7.3:+10786698 MS.gene007611:intron
GGAAAGCTAAAAGAGCAATC+AGG 0.547065 7.3:+10786720 MS.gene007611:CDS
CTTAAGGAAGACTCAGTATG+AGG 0.549901 7.3:-10784928 None:intergenic
CAACAAGCTGTTCCAGATCA+GGG 0.555767 7.3:+10786837 MS.gene007611:CDS
TGCCTCCTAATCAATGTCAC+TGG 0.563013 7.3:+10786928 MS.gene007611:CDS
AAATAAAGTTAGACCCTGAA+AGG 0.563460 7.3:+10785642 MS.gene007611:CDS
GGCCAGTGACATTGATTAGG+AGG 0.565142 7.3:-10786930 None:intergenic
ACAGTAGAAAGCACATCAGA+AGG 0.569739 7.3:+10786777 MS.gene007611:CDS
TGAAGCTTTCAAGAGAGCTA+GGG 0.584376 7.3:+10785669 MS.gene007611:CDS
ACACAGGTTATGAAGTTGAA+GGG 0.593093 7.3:+10786699 MS.gene007611:intron
AGACTCAGTATGAGGAACAA+AGG 0.595030 7.3:-10784920 None:intergenic
TGTTGTGTCTCACCCAATGA+CGG 0.608704 7.3:-10785506 None:intergenic
AAATAGGCGTACAAGGTGGA+AGG 0.609407 7.3:+10785724 MS.gene007611:CDS
AAAACAGAAACTCCAAGAAG+AGG 0.620624 7.3:+10785808 MS.gene007611:CDS
AACCAAACAGCAATTTGGCG+AGG 0.655043 7.3:-10785698 None:intergenic
TCCAAAATAGGCGTACAAGG+TGG 0.664815 7.3:+10785720 MS.gene007611:CDS
AAGCTAAAAGAGCAATCAGG+TGG 0.690901 7.3:+10786723 MS.gene007611:CDS
CATTGGGTGAGACACAACAA+AGG 0.711095 7.3:+10785510 MS.gene007611:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAGAAAAAAAAG+AGG - chr7.3:10785131-10785150 None:intergenic 10.0%
!! AAAAAAAAAGAAAAAAAAGA+GGG - chr7.3:10785130-10785149 None:intergenic 10.0%
!! CTGTATAAAAAAATTAATTA+TGG + chr7.3:10786606-10786625 MS.gene007611:intron 10.0%
!! AAAAAAAAGAAAAAAAAGAG+GGG - chr7.3:10785129-10785148 None:intergenic 15.0%
!! AAAAAAATTAATTATGGACA+TGG + chr7.3:10786612-10786631 MS.gene007611:intron 15.0%
!! AAAAATAGCTAAAAAAACAT+TGG - chr7.3:10785017-10785036 None:intergenic 15.0%
!! AGAAAAAAAAATTGTATGAT+AGG + chr7.3:10785366-10785385 MS.gene007611:intron 15.0%
!! GAAAAAAAAATTGTATGATA+GGG + chr7.3:10785367-10785386 MS.gene007611:intron 15.0%
!! TTATTCAAATTTATTGTCAT+TGG + chr7.3:10785448-10785467 MS.gene007611:intron 15.0%
!!! ATAATTCAACTTCTTTTTAT+AGG - chr7.3:10785987-10786006 None:intergenic 15.0%
!!! GAAAAATAGTAATTTTTGTA+AGG - chr7.3:10786487-10786506 None:intergenic 15.0%
!! AATAATACAACTCTAACAAA+TGG - chr7.3:10786299-10786318 None:intergenic 20.0%
!! CAAAAAATCCAAAGATAATT+AGG - chr7.3:10785836-10785855 None:intergenic 20.0%
!! TATAATGTAGAATATGTGTA+AGG - chr7.3:10786516-10786535 None:intergenic 20.0%
!!! AATTCAACTTTTTTCCTAAT+AGG + chr7.3:10786091-10786110 MS.gene007611:intron 20.0%
!!! ATTTGAAAACTACTCAATTT+TGG + chr7.3:10785186-10785205 MS.gene007611:intron 20.0%
!!! TATCTTTGGATTTTTTGTAT+AGG + chr7.3:10785839-10785858 MS.gene007611:intron 20.0%
!!! TGTTTTTTTTACCTGAATAA+GGG - chr7.3:10784978-10784997 None:intergenic 20.0%
!!! TTATGTGCTTTTTTCTATTT+CGG + chr7.3:10786576-10786595 MS.gene007611:intron 20.0%
! AAAAACATTGGAGTATAAAG+AGG - chr7.3:10785005-10785024 None:intergenic 25.0%
! AACAATTTATGAGATGCATA+TGG + chr7.3:10785303-10785322 MS.gene007611:intron 25.0%
! TAAAAATCACATAATGCAAG+AGG - chr7.3:10785962-10785981 None:intergenic 25.0%
! TACATAAATCAACCATTGTA+GGG - chr7.3:10786658-10786677 None:intergenic 25.0%
! TATTCAGGTAAAAAAAACAC+TGG + chr7.3:10784979-10784998 MS.gene007611:intron 25.0%
!! TGCTTTTCAATTCATATAGA+AGG + chr7.3:10785151-10785170 MS.gene007611:intron 25.0%
!!! GTGTTTTTTTTACCTGAATA+AGG - chr7.3:10784979-10784998 None:intergenic 25.0%
!!! GTTTTTTTTACCTGAATAAG+GGG - chr7.3:10784977-10784996 None:intergenic 25.0%
!!! TATGTGCTTTTTTCTATTTC+GGG + chr7.3:10786577-10786596 MS.gene007611:intron 25.0%
AAAAAAGAGGGGAAATAACT+TGG - chr7.3:10785118-10785137 None:intergenic 30.0%
AAAAAGAGGGGAAATAACTT+GGG - chr7.3:10785117-10785136 None:intergenic 30.0%
AAATAAAGTTAGACCCTGAA+AGG + chr7.3:10785642-10785661 MS.gene007611:CDS 30.0%
ATGGATGAAATGAACATTGA+TGG + chr7.3:10785545-10785564 MS.gene007611:CDS 30.0%
CATAAGTGAGTGTCTAATTA+AGG - chr7.3:10785215-10785234 None:intergenic 30.0%
CCTCAAACTTGAAATGTAAT+AGG - chr7.3:10786180-10786199 None:intergenic 30.0%
CTACATAAATCAACCATTGT+AGG - chr7.3:10786659-10786678 None:intergenic 30.0%
GAGAAATGGTATGAATATGA+TGG + chr7.3:10785410-10785429 MS.gene007611:intron 30.0%
GGATAATAATTAGGCAATAC+AGG - chr7.3:10786954-10786973 None:intergenic 30.0%
TGTTGAATGCTACTATTTGT+TGG - chr7.3:10786822-10786841 None:intergenic 30.0%
! GGTCTAACTTTATTTCTTCT+TGG - chr7.3:10785637-10785656 None:intergenic 30.0%
!! AAGAGGTACCTAATTATCTT+TGG + chr7.3:10785825-10785844 MS.gene007611:intron 30.0%
!! CCTATTACATTTCAAGTTTG+AGG + chr7.3:10786177-10786196 MS.gene007611:intron 30.0%
!!! ATGTGCTTTTTTCTATTTCG+GGG + chr7.3:10786578-10786597 MS.gene007611:intron 30.0%
!!! TTGGATTTTTTGTATAGGCT+AGG + chr7.3:10785844-10785863 MS.gene007611:intron 30.0%
AAAACAGAAACTCCAAGAAG+AGG + chr7.3:10785808-10785827 MS.gene007611:CDS 35.0%
AAAGCTTCATCTTCCTTTCA+GGG - chr7.3:10785658-10785677 None:intergenic 35.0%
AAATCAGACTTACGCCTATT+AGG - chr7.3:10786108-10786127 None:intergenic 35.0%
AACCATTGTAGGGTAATACT+AGG - chr7.3:10786648-10786667 None:intergenic 35.0%
AACCTAGTATTACCCTACAA+TGG + chr7.3:10786643-10786662 MS.gene007611:intron 35.0%
AAGAAATGAAGGCAGAGAAA+TGG + chr7.3:10785396-10785415 MS.gene007611:intron 35.0%
ACACAGGTTATGAAGTTGAA+GGG + chr7.3:10786699-10786718 MS.gene007611:intron 35.0%
AGAATTTGATGTTGTCTCCA+AGG + chr7.3:10785784-10785803 MS.gene007611:CDS 35.0%
ATAGGTCTCTAAGCTTCTAA+AGG - chr7.3:10786162-10786181 None:intergenic 35.0%
ATAGTTGTAGAAGCAGCTTA+AGG - chr7.3:10784947-10784966 None:intergenic 35.0%
ATGTTCATTTCATCCATAGC+TGG - chr7.3:10785542-10785561 None:intergenic 35.0%
GATAATTAGGTACCTCTTCT+TGG - chr7.3:10785823-10785842 None:intergenic 35.0%
GTATGCTGGAAAATTAGGAA+TGG + chr7.3:10785472-10785491 MS.gene007611:intron 35.0%
TAGGGTGTACAAAGAAATGA+AGG + chr7.3:10785385-10785404 MS.gene007611:intron 35.0%
TATAACAACACCCCTTATTC+AGG + chr7.3:10784964-10784983 MS.gene007611:CDS 35.0%
TTATTGTCATTGGTGTATGC+TGG + chr7.3:10785458-10785477 MS.gene007611:intron 35.0%
TTGGTGTATGCTGGAAAATT+AGG + chr7.3:10785467-10785486 MS.gene007611:intron 35.0%
! AAGTAACCAGATTGATTCAC+TGG + chr7.3:10785601-10785620 MS.gene007611:CDS 35.0%
! AGCAATCAGGTGGTAATTTT+AGG + chr7.3:10786733-10786752 MS.gene007611:CDS 35.0%
! ATAATGCAAGAGGTACATGA+AGG - chr7.3:10785952-10785971 None:intergenic 35.0%
! ATATTCTAGAGAGAGAGAGA+AGG - chr7.3:10785069-10785088 None:intergenic 35.0%
! TAATGCAAGAGGTACATGAA+GGG - chr7.3:10785951-10785970 None:intergenic 35.0%
! TTGTTATTGTATCCCTGATC+TGG - chr7.3:10786852-10786871 None:intergenic 35.0%
! TTTGGAACCAAACAGCAATT+TGG - chr7.3:10785706-10785725 None:intergenic 35.0%
!! TTGCTGTTTGGTTCCAAAAT+AGG + chr7.3:10785708-10785727 MS.gene007611:CDS 35.0%
!! TTGGAGTTTCTGTTTTTCCT+TGG - chr7.3:10785804-10785823 None:intergenic 35.0%
AAGCTAAAAGAGCAATCAGG+TGG + chr7.3:10786723-10786742 MS.gene007611:CDS 40.0%
ACAAAGGTTACTTCCAGCTA+TGG + chr7.3:10785526-10785545 MS.gene007611:CDS 40.0%
AGACTCAGTATGAGGAACAA+AGG - chr7.3:10784923-10784942 None:intergenic 40.0%
ATGAAGCTTTCAAGAGAGCT+AGG + chr7.3:10785668-10785687 MS.gene007611:CDS 40.0%
CACACAGGTTATGAAGTTGA+AGG + chr7.3:10786698-10786717 MS.gene007611:intron 40.0%
CTTAAGGAAGACTCAGTATG+AGG - chr7.3:10784931-10784950 None:intergenic 40.0%
GAAAGCTTCATCTTCCTTTC+AGG - chr7.3:10785659-10785678 None:intergenic 40.0%
GAAATGAGTCAACCGTCATT+GGG + chr7.3:10785494-10785513 MS.gene007611:CDS 40.0%
GACTCAGTATGAGGAACAAA+GGG - chr7.3:10784922-10784941 None:intergenic 40.0%
GGAAAGCTAAAAGAGCAATC+AGG + chr7.3:10786720-10786739 MS.gene007611:CDS 40.0%
TCTTCTCCAGTGAATCAATC+TGG - chr7.3:10785610-10785629 None:intergenic 40.0%
TGAAGCTTTCAAGAGAGCTA+GGG + chr7.3:10785669-10785688 MS.gene007611:CDS 40.0%
! ACAGTAGAAAGCACATCAGA+AGG + chr7.3:10786777-10786796 MS.gene007611:CDS 40.0%
AAACAGCAATTTGGCGAGGT+TGG - chr7.3:10785697-10785716 None:intergenic 45.0%
AAATAGGCGTACAAGGTGGA+AGG + chr7.3:10785724-10785743 MS.gene007611:CDS 45.0%
AACCAAACAGCAATTTGGCG+AGG - chr7.3:10785701-10785720 None:intergenic 45.0%
CAACAAGCTGTTCCAGATCA+GGG + chr7.3:10786837-10786856 MS.gene007611:CDS 45.0%
CATTGGGTGAGACACAACAA+AGG + chr7.3:10785510-10785529 MS.gene007611:CDS 45.0%
GGAAATGAGTCAACCGTCAT+TGG + chr7.3:10785493-10785512 MS.gene007611:CDS 45.0%
GGTTCCAAAATAGGCGTACA+AGG + chr7.3:10785717-10785736 MS.gene007611:CDS 45.0%
TCAACAAGCTGTTCCAGATC+AGG + chr7.3:10786836-10786855 MS.gene007611:CDS 45.0%
TCCAAAATAGGCGTACAAGG+TGG + chr7.3:10785720-10785739 MS.gene007611:CDS 45.0%
TGCCTCCTAATCAATGTCAC+TGG + chr7.3:10786928-10786947 MS.gene007611:CDS 45.0%
TGTTGTGTCTCACCCAATGA+CGG - chr7.3:10785509-10785528 None:intergenic 45.0%
! AACCTCGCCAAATTGCTGTT+TGG + chr7.3:10785696-10785715 MS.gene007611:CDS 45.0%
! ACAGGCCAGTGACATTGATT+AGG - chr7.3:10786936-10786955 None:intergenic 45.0%
! TCAATGTGCTCTGAACACAC+AGG + chr7.3:10786683-10786702 MS.gene007611:intron 45.0%
! TCCACCTTGTACGCCTATTT+TGG - chr7.3:10785724-10785743 None:intergenic 45.0%
!!! AAATTTTATGTTTTTTTTTT+CGG - chr7.3:10786026-10786045 None:intergenic 5.0%
!!! TATTTATTTTTTTACTTTTT+TGG - chr7.3:10786236-10786255 None:intergenic 5.0%
! GGCCAGTGACATTGATTAGG+AGG - chr7.3:10786933-10786952 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 10784895 10786977 10784895 ID=MS.gene007611
chr7.3 mRNA 10784895 10786977 10784895 ID=MS.gene007611.t1;Parent=MS.gene007611
chr7.3 exon 10784895 10784985 10784895 ID=MS.gene007611.t1.exon1;Parent=MS.gene007611.t1
chr7.3 CDS 10784895 10784985 10784895 ID=cds.MS.gene007611.t1;Parent=MS.gene007611.t1
chr7.3 exon 10785489 10785829 10785489 ID=MS.gene007611.t1.exon2;Parent=MS.gene007611.t1
chr7.3 CDS 10785489 10785829 10785489 ID=cds.MS.gene007611.t1;Parent=MS.gene007611.t1
chr7.3 exon 10786705 10786977 10786705 ID=MS.gene007611.t1.exon3;Parent=MS.gene007611.t1
chr7.3 CDS 10786705 10786977 10786705 ID=cds.MS.gene007611.t1;Parent=MS.gene007611.t1
Gene Sequence

>MS.gene007611

ATGGATTGGAATGAGAGCACAAGACCCTTTGTTCCTCATACTGAGTCTTCCTTAAGCTGCTTCTACAACTATAACAACACCCCTTATTCAGGTAAAAAAAACACTGGCCTCTTTATACTCCAATGTTTTTTTAGCTATTTTTACTCATTTTAGTTTACAAATCTTGAGTCACCTTCTCTCTCTCTCTAGAATATTGCACATGAATTTATTGACTTGAATCCCAAGTTATTTCCCCTCTTTTTTTTCTTTTTTTTTTTGCTTTTCAATTCATATAGAAGGCAAAACATATATATTTGAAAACTACTCAATTTTGGCAACCTTAATTAGACACTCACTTATGTATATACACTTTTGTGTTATTTAATTTTATAGATAACATTAGATAAAAACAAAACAAAAAGAAAGACAAACAATTTATGAGATGCATATGGTGATGATGTGATGAAAAAGTGTAAAAAGAAAATTAGAAAAAGAAAAAAAAATTGTATGATAGGGTGTACAAAGAAATGAAGGCAGAGAAATGGTATGAATATGATGGTGATGTGATATATATTTATTCAAATTTATTGTCATTGGTGTATGCTGGAAAATTAGGAATGGAAATGAGTCAACCGTCATTGGGTGAGACACAACAAAGGTTACTTCCAGCTATGGATGAAATGAACATTGATGGAAACAATTACAGAGAGAAGAAGAAGAGATTAACAAGTAACCAGATTGATTCACTGGAGAAGAGTTTCCAAGAAGAAATAAAGTTAGACCCTGAAAGGAAGATGAAGCTTTCAAGAGAGCTAGGGCTCCAACCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTACAAGGTGGAAGGCTAAGCAACTTGAACACTTGTATGATGTTCTCAAACAAGAATTTGATGTTGTCTCCAAGGAAAAACAGAAACTCCAAGAAGAGGTACCTAATTATCTTTGGATTTTTTGTATAGGCTAGGATGAATTTGAATGAAATGAGATATATAACATCTATTTTTTATTATGTAACTATAATCTCACGTATTTGTTCATGTATCTCTCCCTTCATGTACCTCTTGCATTATGTGATTTTTAAGCCTATAAAAAGAAGTTGAATTATCAATAAATATTAGAGACCGAAAAAAAAAACATAAAATTTGTATCTAAATTGAAGATTAGTTTTTTGTCTCTAATTTCTATCAAAAATTCAACTTTTTTCCTAATAGGCGTAAGTCTGATTTTTTGTTTGAACTATGTATATGTTATGCTTTGCCTTTAGAAGCTTAGAGACCTATTACATTTCAAGTTTGAGGATAATGTTCATCTTTCTTTTGTGTTGATTTTTGCCAAAAAAGTAAAAAAATAAATATACACACACACAAACAACATATCACTTCTTATAATCAATACCATTTGTTAGAGTTGTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTGTTATTATTATTATTATTATTATGTCATACAAATGCAATTATACATGAGAGTGAAAAATATATTGTGTAATTAATTAATATTTTCCTTACAAAAATTACTATTTTTCTTATTTCCTTACACATATTCTACATTATATATATGTTTTACACTTTGTTGTATTTAAAAATATAAAGAATTATGTGCTTTTTTCTATTTCGGGGATTAACTGTATAAAAAAATTAATTATGGACATGGTGTTCTTCAACCTAGTATTACCCTACAATGGTTGATTTATGTAGCTGATCAATGTGCTCTGAACACACAGGTTATGAAGTTGAAGGGAAAGCTAAAAGAGCAATCAGGTGGTAATTTTAGGACACAAACATATGTTGAAGAAACAGTAGAAAGCACATCAGAAGGTCTACGTTGTTCTAACAAACCAACAAATAGTAGCATTCAACAAGCTGTTCCAGATCAGGGATACAATAACAACAACAACAACAACAGTAGTACTTTCATTGTTGAAGATTTTAATAACTCAGTTTCAATGCCTCCTAATCAATGTCACTGGCCTGTATTGCCTAATTATTATCCCTAA
Protein sequence

>MS.gene007611.t1

MDWNESTRPFVPHTESSLSCFYNYNNTPYSGMEMSQPSLGETQQRLLPAMDEMNIDGNNYREKKKRLTSNQIDSLEKSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDVLKQEFDVVSKEKQKLQEEVMKLKGKLKEQSGGNFRTQTYVEETVESTSEGLRCSNKPTNSSIQQAVPDQGYNNNNNNNSSTFIVEDFNNSVSMPPNQCHWPVLPNYYP