Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007629.t1 | KEH30062.1 | 96.6 | 846 | 29 | 0 | 1 | 846 | 1 | 846 | 0.00E+00 | 1642.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007629.t1 | Q680Q4 | 61.0 | 843 | 312 | 12 | 1 | 839 | 1 | 830 | 5.8e-296 | 1018.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007629.t1 | A0A072UK34 | 96.6 | 846 | 29 | 0 | 1 | 846 | 1 | 846 | 0.0e+00 | 1642.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene007629.t1 | TR | PHD |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007629.t1 | MTR_4g060510 | 98.582 | 846 | 12 | 0 | 1 | 846 | 1 | 846 | 0.0 | 1718 |
MS.gene007629.t1 | MTR_4g060510 | 98.331 | 839 | 14 | 0 | 1 | 839 | 1 | 839 | 0.0 | 1701 |
MS.gene007629.t1 | MTR_4g060510 | 98.331 | 839 | 14 | 0 | 1 | 839 | 1 | 839 | 0.0 | 1700 |
MS.gene007629.t1 | MTR_2g093730 | 71.838 | 838 | 224 | 6 | 2 | 836 | 3 | 831 | 0.0 | 1195 |
MS.gene007629.t1 | MTR_5g009920 | 30.556 | 108 | 72 | 1 | 351 | 458 | 302 | 406 | 4.49e-14 | 77.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007629.t1 | AT5G60410 | 62.040 | 843 | 303 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1051 |
MS.gene007629.t1 | AT5G60410 | 61.922 | 843 | 304 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1049 |
MS.gene007629.t1 | AT5G60410 | 61.922 | 843 | 304 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1049 |
MS.gene007629.t1 | AT5G60410 | 61.922 | 843 | 304 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1049 |
MS.gene007629.t1 | AT5G60410 | 61.922 | 843 | 304 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1049 |
MS.gene007629.t1 | AT5G60410 | 61.922 | 843 | 304 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1047 |
Find 237 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCCTAATGAAGATGATTT+TGG | 0.169950 | 4.2:+43477098 | MS.gene007629:CDS |
GAAAGTGAACGTCTGGATTT+AGG | 0.177524 | 4.2:+43476471 | MS.gene007629:CDS |
CCTCTTCTGGTCATATATTA+AGG | 0.179634 | 4.2:+43476682 | MS.gene007629:CDS |
TTGTCTCAGTTTCCAGAATA+TGG | 0.204078 | 4.2:+43472278 | MS.gene007629:intron |
AACCATCTGCAATATCATTT+TGG | 0.221232 | 4.2:-43476998 | None:intergenic |
TTTCCCAACAGCATTCTTCT+TGG | 0.230199 | 4.2:-43472302 | None:intergenic |
CTGGTTGTGGCCAACTTTAC+AGG | 0.240074 | 4.2:-43473823 | None:intergenic |
GGATTTGGTTGCCGGTATTA+AGG | 0.261927 | 4.2:+43470072 | MS.gene007629:CDS |
GCAAATACTTTGGCTGATTC+TGG | 0.265030 | 4.2:+43477593 | MS.gene007629:CDS |
CGTCTGGATTTAGGGATTCT+TGG | 0.266687 | 4.2:+43476480 | MS.gene007629:CDS |
TTTCAATCGCATCACTTCTA+TGG | 0.279502 | 4.2:+43476298 | MS.gene007629:CDS |
CCAGATCCCAAAGCAGTTTC+GGG | 0.280923 | 4.2:-43477272 | None:intergenic |
GCCAGATCCCAAAGCAGTTT+CGG | 0.293735 | 4.2:-43477273 | None:intergenic |
ACTCCTTTGGAATTAAGTTT+AGG | 0.304656 | 4.2:-43475801 | None:intergenic |
GGTGATGCTTCCACTCAAAA+TGG | 0.305594 | 4.2:+43477530 | MS.gene007629:CDS |
ATTCTTCTTGGCCCATATTC+TGG | 0.317429 | 4.2:-43472290 | None:intergenic |
GAAGTGATGCGATTGAAATA+AGG | 0.318290 | 4.2:-43476293 | None:intergenic |
GAAAGAGCAGGTGGCAAAAT+TGG | 0.320071 | 4.2:+43472321 | MS.gene007629:CDS |
CTGGTTTAAAACTTGGCATT+AGG | 0.321743 | 4.2:+43476610 | MS.gene007629:CDS |
GGAGGAATCGCAATGGGAAT+TGG | 0.324383 | 4.2:+43476631 | MS.gene007629:CDS |
TATACAGACCTAGCAGTTAA+TGG | 0.329641 | 4.2:+43474565 | MS.gene007629:CDS |
CCCGAAACTGCTTTGGGATC+TGG | 0.333745 | 4.2:+43477272 | MS.gene007629:CDS |
GTGGAAATGGATTTGGTTGC+CGG | 0.336319 | 4.2:+43470064 | None:intergenic |
AAGAACATTTATGAATTAGA+AGG | 0.340056 | 4.2:-43477632 | None:intergenic |
TGCTGATAGCGACAGTGATT+TGG | 0.342121 | 4.2:+43475897 | MS.gene007629:CDS |
CACGCGTCTGTCGTTGTGTT+GGG | 0.342273 | 4.2:+43475854 | MS.gene007629:CDS |
ATTCCAAAATCATCTTCATT+AGG | 0.342360 | 4.2:-43477101 | None:intergenic |
CTCAGGAAAATGCAGATATC+TGG | 0.345078 | 4.2:+43472586 | MS.gene007629:intron |
CTCGGTGGAAGTTCATGCTT+GGG | 0.346082 | 4.2:+43477071 | MS.gene007629:CDS |
GTCATTGCCTTCTGCATCTC+AGG | 0.353133 | 4.2:+43477136 | MS.gene007629:CDS |
ATTGGCTCCCGAAACTGCTT+TGG | 0.354081 | 4.2:+43477265 | MS.gene007629:CDS |
TGAACGACAAGGTTCCATTC+AGG | 0.356491 | 4.2:+43474527 | MS.gene007629:CDS |
GACAACCCATTGGCATTTGC+TGG | 0.356540 | 4.2:+43477356 | MS.gene007629:CDS |
ATCACCATCCCGACCACTTT+CGG | 0.356985 | 4.2:-43476757 | None:intergenic |
AAAGTGAACGTCTGGATTTA+GGG | 0.357301 | 4.2:+43476472 | MS.gene007629:CDS |
AGTTCACAATAAAATTTATC+AGG | 0.361374 | 4.2:-43473057 | None:intergenic |
GGCCAATGGCATCTTCCTAA+TGG | 0.367292 | 4.2:+43476501 | MS.gene007629:CDS |
AGTGTTAACCAGGGTGGTGG+TGG | 0.369509 | 4.2:+43476786 | MS.gene007629:CDS |
TTGGCTCCCGAAACTGCTTT+GGG | 0.370189 | 4.2:+43477266 | MS.gene007629:CDS |
AGTGATGAGGTGCAATTAAT+AGG | 0.378729 | 4.2:-43477230 | None:intergenic |
CAGTATAAGCCTTCGTTGTC+CGG | 0.381422 | 4.2:+43475939 | MS.gene007629:CDS |
CATTGTCTCTGGATGGGACT+TGG | 0.386225 | 4.2:-43477568 | None:intergenic |
ATGCCTTCCATAGGTTTCTC+TGG | 0.386479 | 4.2:-43473024 | None:intergenic |
TGTGGAAGTACATTGGAAAC+AGG | 0.389365 | 4.2:+43472730 | MS.gene007629:CDS |
AGTATTTGCGCCATTGTCTC+TGG | 0.389636 | 4.2:-43477579 | None:intergenic |
GACGACTCAGCTGGTCTTGT+GGG | 0.390350 | 4.2:-43477407 | None:intergenic |
CTTACTCTCGGAGGTGGTGC+TGG | 0.391540 | 4.2:+43477497 | MS.gene007629:CDS |
GTTCTCTCCACGCACTGCAC+TGG | 0.391843 | 4.2:-43474350 | None:intergenic |
CAGCACCACCTCCGAGAGTA+AGG | 0.392682 | 4.2:-43477496 | None:intergenic |
AACACTGAAGCAAGTAAAAC+AGG | 0.397029 | 4.2:+43476566 | MS.gene007629:CDS |
GGTCTATTAGTTGTTCGAAT+AGG | 0.398032 | 4.2:-43474741 | None:intergenic |
ATGGTGTTTCCACTGAAGAT+TGG | 0.399962 | 4.2:+43477468 | MS.gene007629:CDS |
CAATAAAATTTATCAGGAAC+TGG | 0.400321 | 4.2:-43473051 | None:intergenic |
AATGCAAGGTTTGAATCTTC+CGG | 0.401374 | 4.2:-43476072 | None:intergenic |
TGTCTCAGTTTCCAGAATAT+GGG | 0.403486 | 4.2:+43472279 | MS.gene007629:intron |
CTGCATCAGAACCGAACAAT+TGG | 0.403934 | 4.2:-43477172 | None:intergenic |
GAGACAACAAACACCTCTTC+TGG | 0.405142 | 4.2:+43476669 | MS.gene007629:CDS |
TGATGGCTCTTGGCGTGTTA+AGG | 0.415872 | 4.2:+43476440 | MS.gene007629:CDS |
TCAGTTAGGACTTTCAAAAC+AGG | 0.417332 | 4.2:+43471419 | MS.gene007629:CDS |
GAAGAGGTGTTTGTTGTCTC+GGG | 0.417393 | 4.2:-43476666 | None:intergenic |
CAGAAGGCGCAGTTTGCAAC+AGG | 0.417817 | 4.2:+43475018 | MS.gene007629:CDS |
AGAAGAGGTGTTTGTTGTCT+CGG | 0.418486 | 4.2:-43476667 | None:intergenic |
AAGTGATGCGATTGAAATAA+GGG | 0.420028 | 4.2:-43476292 | None:intergenic |
ATTGGAATAACAACTTGTTC+AGG | 0.423238 | 4.2:-43476720 | None:intergenic |
ACCTTGCTCATCTGAGAGAA+TGG | 0.424806 | 4.2:-43471679 | None:intergenic |
TGAAGAAGACAATGACATAT+TGG | 0.426237 | 4.2:+43476947 | MS.gene007629:CDS |
TCCCTTTGTACTTCTACTGC+TGG | 0.427026 | 4.2:+43476525 | MS.gene007629:CDS |
TGGTGGTTGTTATTTGCAAT+TGG | 0.428837 | 4.2:-43476978 | None:intergenic |
GGCTCACCGTCAGACTCCTT+TGG | 0.429043 | 4.2:-43475814 | None:intergenic |
GGTCCAGGATTCCAATTGTT+CGG | 0.430991 | 4.2:+43477161 | MS.gene007629:CDS |
TCGGAGCCACTGCTGCTCAT+TGG | 0.433629 | 4.2:-43476738 | None:intergenic |
TTCTCTCCACGCACTGCACT+GGG | 0.434383 | 4.2:-43474349 | None:intergenic |
CTCTTCTGGTCATATATTAA+GGG | 0.435745 | 4.2:+43476683 | MS.gene007629:CDS |
GATCAAGCAAATGTCTCTAA+TGG | 0.441265 | 4.2:+43477449 | MS.gene007629:CDS |
AAGGATGTGCTGACTCAGTT+AGG | 0.444292 | 4.2:+43471405 | MS.gene007629:CDS |
GAGGAATCGCAATGGGAATT+GGG | 0.446679 | 4.2:+43476632 | MS.gene007629:CDS |
GGTTCAAGAATGAAGATTGC+CGG | 0.447230 | 4.2:+43476053 | MS.gene007629:CDS |
GCGAGCATCACATACTGTTA+AGG | 0.451776 | 4.2:-43474969 | None:intergenic |
CTCTTACAAGATTCCTCTGC+TGG | 0.453644 | 4.2:+43477299 | MS.gene007629:CDS |
TGCTGACTTAAACGGTGGTT+TGG | 0.454513 | 4.2:+43477331 | MS.gene007629:CDS |
GGACCTGCTGGTTTAAAACT+TGG | 0.454520 | 4.2:+43476603 | MS.gene007629:CDS |
TCTGCATCTCAGGCTGGTCC+AGG | 0.454585 | 4.2:+43477146 | MS.gene007629:CDS |
TTGCCTTCTGCATCTCAGGC+TGG | 0.454882 | 4.2:+43477140 | MS.gene007629:CDS |
GAAGTACAAAGGGATCCATT+AGG | 0.456957 | 4.2:-43476516 | None:intergenic |
ACCTTTGTTACCTGTAAAGT+TGG | 0.457420 | 4.2:+43473813 | MS.gene007629:CDS |
CGGACAGATGCTGACTTAAA+CGG | 0.458317 | 4.2:+43477323 | MS.gene007629:CDS |
GCGTATGGGTCAACAATTCC+AGG | 0.461698 | 4.2:-43477035 | None:intergenic |
CACATCTGCTCAGGTGGGTG+GGG | 0.465487 | 4.2:+43476899 | MS.gene007629:CDS |
ATGCAGAAGGCAATGACCAC+AGG | 0.465646 | 4.2:-43477130 | None:intergenic |
TCACCCATCAGTCGGAATAC+TGG | 0.470078 | 4.2:-43473842 | None:intergenic |
AGGTTCCATTCAGGATTCAA+TGG | 0.470932 | 4.2:+43474536 | MS.gene007629:CDS |
TGTAGTAGATTGAATTTGAA+AGG | 0.471804 | 4.2:-43472686 | None:intergenic |
CAGTGGCTCCGAAAGTGGTC+GGG | 0.478789 | 4.2:+43476749 | MS.gene007629:CDS |
TGCAGAGGCCTCTGATGCAT+TGG | 0.480231 | 4.2:+43477190 | MS.gene007629:CDS |
AGACCTGGTTCTCAGTTGCT+TGG | 0.480715 | 4.2:+43474759 | MS.gene007629:CDS |
AGACAATGGCGCAAATACTT+TGG | 0.481858 | 4.2:+43477583 | MS.gene007629:CDS |
GGTTACTCCATGCCACCTCC+TGG | 0.482671 | 4.2:+43477017 | MS.gene007629:CDS |
CGTGCAAGAGCATCTTCAAA+AGG | 0.484446 | 4.2:-43475835 | None:intergenic |
AGATTCTGATCTTCAGCGTA+TGG | 0.484700 | 4.2:-43477050 | None:intergenic |
AAAGAGTGAAAGTGAACGTC+TGG | 0.487302 | 4.2:+43476464 | MS.gene007629:CDS |
GCACGCGTCTGTCGTTGTGT+TGG | 0.491160 | 4.2:+43475853 | MS.gene007629:CDS |
AATTGGTGGATGACACGTAT+AGG | 0.495834 | 4.2:+43472338 | MS.gene007629:CDS |
AAAACAAGAATTTGATGTTG+AGG | 0.498260 | 4.2:+43474409 | MS.gene007629:CDS |
AGGTGAAGCCTGATGGCTCT+TGG | 0.500229 | 4.2:+43476430 | MS.gene007629:CDS |
TGATCTAGCATCAAAGGGTC+AGG | 0.502689 | 4.2:+43472615 | MS.gene007629:CDS |
TTTGCGCCATTGTCTCTGGA+TGG | 0.506095 | 4.2:-43477575 | None:intergenic |
ATTGATTATTCTACTACCAA+TGG | 0.508427 | 4.2:+43476813 | MS.gene007629:CDS |
AACTGATGTGTTGCCACACT+TGG | 0.509642 | 4.2:-43472990 | None:intergenic |
GGAAACAGGGGATTTGATCA+AGG | 0.511350 | 4.2:+43472744 | MS.gene007629:CDS |
GAACCGAACAATTGGAATCC+TGG | 0.511458 | 4.2:-43477164 | None:intergenic |
GTGTTAACCAGGGTGGTGGT+GGG | 0.511734 | 4.2:+43476787 | MS.gene007629:CDS |
AATAATGTTGATTTAGCTCG+TGG | 0.515010 | 4.2:+43476861 | MS.gene007629:CDS |
TCTCGGTGGAAGTTCATGCT+TGG | 0.515187 | 4.2:+43477070 | MS.gene007629:CDS |
CATTTATGAATTAGAAGGGT+CGG | 0.519992 | 4.2:-43477627 | None:intergenic |
TACTACCAATGGAATTGAGA+TGG | 0.520220 | 4.2:+43476824 | MS.gene007629:CDS |
AGCCACTGATCTAGCATCAA+AGG | 0.521664 | 4.2:+43472609 | MS.gene007629:CDS |
GGAGCTAACGGTCGTGATGA+TGG | 0.522397 | 4.2:+43474780 | MS.gene007629:CDS |
TTGCGCCATTGTCTCTGGAT+GGG | 0.523797 | 4.2:-43477574 | None:intergenic |
TTAACACGCCAAGAGCCATC+AGG | 0.524906 | 4.2:-43476438 | None:intergenic |
ACACATCTGCTCAGGTGGGT+GGG | 0.527629 | 4.2:+43476898 | MS.gene007629:CDS |
TAAAATTTATCAGGAACTGG+TGG | 0.527907 | 4.2:-43473048 | None:intergenic |
TCTCAGTTGCTTGGAGCTAA+CGG | 0.528194 | 4.2:+43474768 | MS.gene007629:CDS |
GTTTAAAACTTGGCATTAGG+AGG | 0.528847 | 4.2:+43476613 | MS.gene007629:CDS |
TCCAGCAGTAGAAGTACAAA+GGG | 0.531371 | 4.2:-43476526 | None:intergenic |
AGCAGCAGTGGCTCCGAAAG+TGG | 0.531558 | 4.2:+43476744 | MS.gene007629:CDS |
AACAATTCCAGGAGGTGGCA+TGG | 0.531645 | 4.2:-43477024 | None:intergenic |
GCATTAGGAGGAATCGCAAT+GGG | 0.531717 | 4.2:+43476625 | MS.gene007629:CDS |
TGAAGATGTTACAGAGGTTG+AGG | 0.533950 | 4.2:+43476410 | MS.gene007629:CDS |
ACCACCACCCTGGTTAACAC+TGG | 0.535166 | 4.2:-43476784 | None:intergenic |
ATTCAAACCTTGCATTCACA+TGG | 0.535289 | 4.2:+43476079 | MS.gene007629:CDS |
TGAAAGTACCATTAACTGCT+AGG | 0.535333 | 4.2:-43474573 | None:intergenic |
AACACATCTGCTCAGGTGGG+TGG | 0.535405 | 4.2:+43476897 | MS.gene007629:CDS |
CATCTCCAGCAAATGCCAAT+GGG | 0.537152 | 4.2:-43477361 | None:intergenic |
ATTTAGGGATTCTTGGCCAA+TGG | 0.537251 | 4.2:+43476487 | MS.gene007629:CDS |
TTCAAAACAGGGAAAGAAGC+AGG | 0.537787 | 4.2:+43471431 | MS.gene007629:CDS |
TATTATTCCAGAGAAACCTA+TGG | 0.538683 | 4.2:+43473017 | MS.gene007629:CDS |
AATGAATCAACGGTCAAGAA+AGG | 0.539654 | 4.2:+43476130 | MS.gene007629:CDS |
ATCAGTCGGAATACTGGTTG+TGG | 0.542117 | 4.2:-43473836 | None:intergenic |
TGATGATCCCAGTGTTAACC+AGG | 0.542672 | 4.2:+43476776 | MS.gene007629:CDS |
TGCGCATAACACATCTGCTC+AGG | 0.543129 | 4.2:+43476890 | MS.gene007629:CDS |
GCTCCAAGCAACTGAGAACC+AGG | 0.545103 | 4.2:-43474762 | None:intergenic |
GGTGGTGCTGGCGGTAGTAA+TGG | 0.547848 | 4.2:+43477509 | MS.gene007629:CDS |
GCCACTGATCTAGCATCAAA+GGG | 0.547947 | 4.2:+43472610 | MS.gene007629:CDS |
GCATAACACATCTGCTCAGG+TGG | 0.551045 | 4.2:+43476893 | MS.gene007629:CDS |
TAGCGACAGTGATTTGGAAG+TGG | 0.551318 | 4.2:+43475903 | MS.gene007629:CDS |
TGGTTGTTATTTGCAATTGG+AGG | 0.553691 | 4.2:-43476975 | None:intergenic |
ACAACCAGTATTCCGACTGA+TGG | 0.554333 | 4.2:+43473838 | MS.gene007629:CDS |
ATCACTGAACGGTTATGCAT+TGG | 0.555537 | 4.2:+43477247 | MS.gene007629:CDS |
CCTTAATATATGACCAGAAG+AGG | 0.556281 | 4.2:-43476682 | None:intergenic |
ACTGGTGGGATGCCTTCCAT+AGG | 0.557028 | 4.2:-43473033 | None:intergenic |
TCATCTCCAGCAAATGCCAA+TGG | 0.557087 | 4.2:-43477362 | None:intergenic |
TGGGCCAAGAAGAATGCTGT+TGG | 0.557207 | 4.2:+43472298 | MS.gene007629:CDS |
AGAACATTTATGAATTAGAA+GGG | 0.557697 | 4.2:-43477631 | None:intergenic |
CCCAGTGTTAACCAGGGTGG+TGG | 0.558647 | 4.2:+43476783 | MS.gene007629:CDS |
GATCCTAAACTTAATTCCAA+AGG | 0.559168 | 4.2:+43475798 | MS.gene007629:intron |
GCAGTGGCTCCGAAAGTGGT+CGG | 0.559727 | 4.2:+43476748 | MS.gene007629:CDS |
GGGCCAAGAAGAATGCTGTT+GGG | 0.560934 | 4.2:+43472299 | MS.gene007629:CDS |
TTCTGTAGGATCTCGTCGAT+CGG | 0.560941 | 4.2:+43471649 | MS.gene007629:intron |
CACCAAAATGATATTGCAGA+TGG | 0.562331 | 4.2:+43476996 | MS.gene007629:CDS |
GATTCTGATCTTCAGCGTAT+GGG | 0.562479 | 4.2:-43477049 | None:intergenic |
CCACCACCCTGGTTAACACT+GGG | 0.563823 | 4.2:-43476783 | None:intergenic |
ACAGATGCTGACTTAAACGG+TGG | 0.564719 | 4.2:+43477326 | MS.gene007629:CDS |
AGAATCCATCTCAATTCCAT+TGG | 0.565368 | 4.2:-43476829 | None:intergenic |
GGGTCAACAATTCCAGGAGG+TGG | 0.565780 | 4.2:-43477029 | None:intergenic |
ACGCGTCTGTCGTTGTGTTG+GGG | 0.565862 | 4.2:+43475855 | MS.gene007629:CDS |
AGACGACTCAGCTGGTCTTG+TGG | 0.566685 | 4.2:-43477408 | None:intergenic |
GGCTCCGAAAGTGGTCGGGA+TGG | 0.567316 | 4.2:+43476753 | MS.gene007629:CDS |
TTCTGGTCATATATTAAGGG+AGG | 0.568385 | 4.2:+43476686 | MS.gene007629:CDS |
AGAGCAGGTGGCAAAATTGG+TGG | 0.568651 | 4.2:+43472324 | MS.gene007629:CDS |
ACGATGATATACCTTAATAC+CGG | 0.569554 | 4.2:-43470083 | None:intergenic |
TGTGGCCATTGAATCCTGAA+TGG | 0.572530 | 4.2:-43474541 | None:intergenic |
CTGTCTCTGTGGAAGTACAT+TGG | 0.572912 | 4.2:+43472723 | MS.gene007629:CDS |
CTCCACGCACTGCACTGGGT+TGG | 0.574223 | 4.2:-43474345 | None:intergenic |
CTCCAGCAGTAGAAGTACAA+AGG | 0.578719 | 4.2:-43476527 | None:intergenic |
ACCCTTTGATGCTAGATCAG+TGG | 0.579842 | 4.2:-43472611 | None:intergenic |
TTTCCGTATAAAAGAGCTCA+AGG | 0.582643 | 4.2:+43471386 | MS.gene007629:CDS |
TTCTGCATAGACGACTCAGC+TGG | 0.582789 | 4.2:-43477416 | None:intergenic |
TGGTTTGGTTGACAACCCAT+TGG | 0.583485 | 4.2:+43477346 | MS.gene007629:CDS |
TACGCTGAAGATCAGAATCT+CGG | 0.583616 | 4.2:+43477053 | MS.gene007629:CDS |
CAAATGAACCAATGCATCAG+AGG | 0.583738 | 4.2:-43477198 | None:intergenic |
ATCCATTAGGAAGATGCCAT+TGG | 0.587077 | 4.2:-43476503 | None:intergenic |
AAACAACCCATGTGAATGCA+AGG | 0.588755 | 4.2:-43476086 | None:intergenic |
GTCAGATAGTAGTAATGTGA+AGG | 0.588763 | 4.2:+43472642 | MS.gene007629:CDS |
GAGGTTGAGGTGAAGCCTGA+TGG | 0.589171 | 4.2:+43476423 | MS.gene007629:CDS |
TAGGCGTTCGAATTGTCAGA+AGG | 0.591663 | 4.2:+43475002 | MS.gene007629:CDS |
TATTACCATTTATAGATGAG+TGG | 0.593609 | 4.2:+43476032 | MS.gene007629:intron |
GATTGGACATCCCTTACTCT+CGG | 0.594442 | 4.2:+43477485 | MS.gene007629:CDS |
GAATGCTGTTGGGAAAGAGC+AGG | 0.595394 | 4.2:+43472309 | MS.gene007629:CDS |
TGCATAACCGTTCAGTGATG+AGG | 0.596581 | 4.2:-43477243 | None:intergenic |
TCAACTCACAAGAGCAGACA+AGG | 0.599982 | 4.2:+43474376 | MS.gene007629:CDS |
GTTATTCCAATGAGCAGCAG+TGG | 0.601585 | 4.2:+43476732 | MS.gene007629:CDS |
ATTGTTCGGTTCTGATGCAG+AGG | 0.604658 | 4.2:+43477175 | MS.gene007629:CDS |
AAAATTTATCAGGAACTGGT+GGG | 0.607402 | 4.2:-43473047 | None:intergenic |
AAGGGATGTCCAATCTTCAG+TGG | 0.608756 | 4.2:-43477477 | None:intergenic |
CAACCAGTATTCCGACTGAT+GGG | 0.609101 | 4.2:+43473839 | MS.gene007629:CDS |
ATCACGCCGCATACAAAAGA+CGG | 0.610322 | 4.2:+43474932 | MS.gene007629:CDS |
AGCATCTGTCCGTCCAGCAG+AGG | 0.610516 | 4.2:-43477312 | None:intergenic |
CAGTTAGGACTTTCAAAACA+GGG | 0.613916 | 4.2:+43471420 | MS.gene007629:CDS |
ACTCTCGGAGGTGGTGCTGG+CGG | 0.614564 | 4.2:+43477500 | MS.gene007629:CDS |
GGCATTAGGAGGAATCGCAA+TGG | 0.614693 | 4.2:+43476624 | MS.gene007629:CDS |
ACATCCCTTACTCTCGGAGG+TGG | 0.615368 | 4.2:+43477491 | MS.gene007629:CDS |
CGCGTCTGTCGTTGTGTTGG+GGG | 0.617331 | 4.2:+43475856 | MS.gene007629:CDS |
TGCTGTTGGGAAAGAGCAGG+TGG | 0.617341 | 4.2:+43472312 | MS.gene007629:CDS |
TACAAGATTCCTCTGCTGGA+CGG | 0.618020 | 4.2:+43477303 | MS.gene007629:CDS |
TTCAAACCTTGCATTCACAT+GGG | 0.620953 | 4.2:+43476080 | MS.gene007629:CDS |
GTGGAAGTACATTGGAAACA+GGG | 0.621176 | 4.2:+43472731 | MS.gene007629:CDS |
TGCAGAAGGCAATGACCACA+GGG | 0.622669 | 4.2:-43477129 | None:intergenic |
ACAAAGATTCGCTGTCTCTG+TGG | 0.626008 | 4.2:+43472712 | MS.gene007629:CDS |
CAATATGCCCACCACCACCC+TGG | 0.626286 | 4.2:-43476794 | None:intergenic |
TCGGTGGAAGTTCATGCTTG+GGG | 0.626592 | 4.2:+43477072 | MS.gene007629:CDS |
GCCAACTTTACAGGTAACAA+AGG | 0.626800 | 4.2:-43473814 | None:intergenic |
TACCAACCCAGTGCAGTGCG+TGG | 0.627424 | 4.2:+43474343 | MS.gene007629:CDS |
AGCACCACCTCCGAGAGTAA+GGG | 0.628927 | 4.2:-43477495 | None:intergenic |
TTAATTCCAAAGGAGTCTGA+CGG | 0.634359 | 4.2:+43475808 | MS.gene007629:CDS |
CAAGTCCCATCCAGAGACAA+TGG | 0.637497 | 4.2:+43477569 | MS.gene007629:CDS |
GGACCAGCCTGAGATGCAGA+AGG | 0.640187 | 4.2:-43477143 | None:intergenic |
TCCATTCTCTCAGATGAGCA+AGG | 0.640347 | 4.2:+43471678 | MS.gene007629:CDS |
CCATGTACTCACCCATCAGT+CGG | 0.640779 | 4.2:-43473850 | None:intergenic |
AATTGCACCTCATCACTGAA+CGG | 0.645687 | 4.2:+43477236 | MS.gene007629:CDS |
CATAACACATCTGCTCAGGT+GGG | 0.645991 | 4.2:+43476894 | MS.gene007629:CDS |
ATTCCAGAGAAACCTATGGA+AGG | 0.646238 | 4.2:+43473021 | MS.gene007629:CDS |
CTGAAGCAAGTAAAACAGGA+AGG | 0.648396 | 4.2:+43476570 | MS.gene007629:CDS |
GTGTATGCTTCTGAACGACA+AGG | 0.650450 | 4.2:+43474516 | MS.gene007629:CDS |
TTGCGGTGAAGATGTTACAG+AGG | 0.656546 | 4.2:+43476404 | MS.gene007629:CDS |
ACGACTCAGCTGGTCTTGTG+GGG | 0.660023 | 4.2:-43477406 | None:intergenic |
ATTCGAACAACTAATAGACC+TGG | 0.670126 | 4.2:+43474744 | MS.gene007629:CDS |
CTGGTACAGATGATTAATTG+CGG | 0.671508 | 4.2:+43476387 | MS.gene007629:intron |
CACAAGAGCAGACAAGGACA+TGG | 0.672436 | 4.2:+43474382 | MS.gene007629:CDS |
AAAACCTTACCGGACAACGA+AGG | 0.680746 | 4.2:-43475948 | None:intergenic |
TGGAAGTACATTGGAAACAG+GGG | 0.683506 | 4.2:+43472732 | MS.gene007629:CDS |
GCTGAAGATCAGAATCTCGG+TGG | 0.714451 | 4.2:+43477056 | MS.gene007629:CDS |
ATGATGCAAGATGCCAAGTG+TGG | 0.722474 | 4.2:+43472977 | MS.gene007629:CDS |
ACTGCTAGGTCTGTATACTG+TGG | 0.722592 | 4.2:-43474559 | None:intergenic |
TGGACATCCCTTACTCTCGG+AGG | 0.740031 | 4.2:+43477488 | MS.gene007629:CDS |
GATGATCCCAGTGTTAACCA+GGG | 0.753201 | 4.2:+43476777 | MS.gene007629:CDS |
TATGGGTCAACAATTCCAGG+AGG | 0.767647 | 4.2:-43477032 | None:intergenic |
GATCCCAGTGTTAACCAGGG+TGG | 0.772459 | 4.2:+43476780 | MS.gene007629:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 43470070 | 43477646 | 43470070 | ID=MS.gene007629 |
chr4.2 | mRNA | 43470070 | 43477646 | 43470070 | ID=MS.gene007629.t1;Parent=MS.gene007629 |
chr4.2 | exon | 43470070 | 43470093 | 43470070 | ID=MS.gene007629.t1.exon1;Parent=MS.gene007629.t1 |
chr4.2 | CDS | 43470070 | 43470093 | 43470070 | ID=cds.MS.gene007629.t1;Parent=MS.gene007629.t1 |
chr4.2 | exon | 43471372 | 43471452 | 43471372 | ID=MS.gene007629.t1.exon2;Parent=MS.gene007629.t1 |
chr4.2 | CDS | 43471372 | 43471452 | 43471372 | ID=cds.MS.gene007629.t1;Parent=MS.gene007629.t1 |
chr4.2 | exon | 43471657 | 43471699 | 43471657 | ID=MS.gene007629.t1.exon3;Parent=MS.gene007629.t1 |
chr4.2 | CDS | 43471657 | 43471699 | 43471657 | ID=cds.MS.gene007629.t1;Parent=MS.gene007629.t1 |
chr4.2 | exon | 43472287 | 43472359 | 43472287 | ID=MS.gene007629.t1.exon4;Parent=MS.gene007629.t1 |
chr4.2 | CDS | 43472287 | 43472359 | 43472287 | ID=cds.MS.gene007629.t1;Parent=MS.gene007629.t1 |
chr4.2 | exon | 43472591 | 43472765 | 43472591 | ID=MS.gene007629.t1.exon5;Parent=MS.gene007629.t1 |
chr4.2 | CDS | 43472591 | 43472765 | 43472591 | ID=cds.MS.gene007629.t1;Parent=MS.gene007629.t1 |
chr4.2 | exon | 43472973 | 43473103 | 43472973 | ID=MS.gene007629.t1.exon6;Parent=MS.gene007629.t1 |
chr4.2 | CDS | 43472973 | 43473103 | 43472973 | ID=cds.MS.gene007629.t1;Parent=MS.gene007629.t1 |
chr4.2 | exon | 43473792 | 43473860 | 43473792 | ID=MS.gene007629.t1.exon7;Parent=MS.gene007629.t1 |
chr4.2 | CDS | 43473792 | 43473860 | 43473792 | ID=cds.MS.gene007629.t1;Parent=MS.gene007629.t1 |
chr4.2 | exon | 43474343 | 43474430 | 43474343 | ID=MS.gene007629.t1.exon8;Parent=MS.gene007629.t1 |
chr4.2 | CDS | 43474343 | 43474430 | 43474343 | ID=cds.MS.gene007629.t1;Parent=MS.gene007629.t1 |
chr4.2 | exon | 43474511 | 43474586 | 43474511 | ID=MS.gene007629.t1.exon9;Parent=MS.gene007629.t1 |
chr4.2 | CDS | 43474511 | 43474586 | 43474511 | ID=cds.MS.gene007629.t1;Parent=MS.gene007629.t1 |
chr4.2 | exon | 43474736 | 43474809 | 43474736 | ID=MS.gene007629.t1.exon10;Parent=MS.gene007629.t1 |
chr4.2 | CDS | 43474736 | 43474809 | 43474736 | ID=cds.MS.gene007629.t1;Parent=MS.gene007629.t1 |
chr4.2 | exon | 43474932 | 43475039 | 43474932 | ID=MS.gene007629.t1.exon11;Parent=MS.gene007629.t1 |
chr4.2 | CDS | 43474932 | 43475039 | 43474932 | ID=cds.MS.gene007629.t1;Parent=MS.gene007629.t1 |
chr4.2 | exon | 43475799 | 43475960 | 43475799 | ID=MS.gene007629.t1.exon12;Parent=MS.gene007629.t1 |
chr4.2 | CDS | 43475799 | 43475960 | 43475799 | ID=cds.MS.gene007629.t1;Parent=MS.gene007629.t1 |
chr4.2 | exon | 43476047 | 43476151 | 43476047 | ID=MS.gene007629.t1.exon13;Parent=MS.gene007629.t1 |
chr4.2 | CDS | 43476047 | 43476151 | 43476047 | ID=cds.MS.gene007629.t1;Parent=MS.gene007629.t1 |
chr4.2 | exon | 43476239 | 43476319 | 43476239 | ID=MS.gene007629.t1.exon14;Parent=MS.gene007629.t1 |
chr4.2 | CDS | 43476239 | 43476319 | 43476239 | ID=cds.MS.gene007629.t1;Parent=MS.gene007629.t1 |
chr4.2 | exon | 43476396 | 43477646 | 43476396 | ID=MS.gene007629.t1.exon15;Parent=MS.gene007629.t1 |
chr4.2 | CDS | 43476396 | 43477646 | 43476396 | ID=cds.MS.gene007629.t1;Parent=MS.gene007629.t1 |
Gene Sequence |
Protein sequence |