Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007638.t1 | XP_003606419.2 | 97.1 | 451 | 11 | 1 | 3 | 453 | 47 | 495 | 1.40E-252 | 881.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007638.t1 | Q700D2 | 54.5 | 323 | 113 | 9 | 9 | 302 | 68 | 385 | 4.6e-82 | 306.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007638.t1 | G7JPG1 | 97.1 | 451 | 11 | 1 | 3 | 453 | 47 | 495 | 1.0e-252 | 881.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene007638.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007638.t1 | MTR_4g059870 | 97.118 | 451 | 11 | 1 | 3 | 453 | 47 | 495 | 0.0 | 919 |
| MS.gene007638.t1 | MTR_2g093960 | 56.232 | 345 | 114 | 11 | 3 | 326 | 41 | 369 | 1.60e-119 | 355 |
| MS.gene007638.t1 | MTR_2g099990 | 42.918 | 466 | 191 | 13 | 2 | 451 | 54 | 460 | 3.91e-105 | 320 |
| MS.gene007638.t1 | MTR_8g017210 | 44.017 | 468 | 201 | 16 | 2 | 442 | 70 | 503 | 5.90e-104 | 319 |
| MS.gene007638.t1 | MTR_2g090745 | 51.488 | 336 | 111 | 10 | 4 | 303 | 17 | 336 | 2.16e-100 | 307 |
| MS.gene007638.t1 | MTR_1g094115 | 40.078 | 514 | 207 | 16 | 3 | 452 | 56 | 532 | 2.46e-100 | 310 |
| MS.gene007638.t1 | MTR_1g016010 | 76.608 | 171 | 40 | 0 | 2 | 172 | 49 | 219 | 1.08e-98 | 303 |
| MS.gene007638.t1 | MTR_1g112270 | 74.854 | 171 | 40 | 2 | 3 | 173 | 53 | 220 | 1.60e-96 | 301 |
| MS.gene007638.t1 | MTR_1g112270 | 75.148 | 169 | 39 | 2 | 5 | 173 | 66 | 231 | 5.30e-95 | 298 |
| MS.gene007638.t1 | MTR_2g099990 | 42.000 | 450 | 186 | 13 | 18 | 451 | 1 | 391 | 9.93e-95 | 291 |
| MS.gene007638.t1 | MTR_1g094115 | 38.788 | 495 | 202 | 16 | 22 | 452 | 58 | 515 | 9.84e-88 | 277 |
| MS.gene007638.t1 | MTR_2g017720 | 77.586 | 116 | 20 | 2 | 4 | 119 | 323 | 432 | 1.33e-55 | 191 |
| MS.gene007638.t1 | MTR_3g102000 | 77.647 | 85 | 15 | 2 | 32 | 116 | 51 | 131 | 1.31e-37 | 137 |
| MS.gene007638.t1 | MTR_5g030560 | 80.000 | 45 | 9 | 0 | 4 | 48 | 16 | 60 | 2.34e-21 | 88.2 |
| MS.gene007638.t1 | MTR_1g093095 | 34.507 | 142 | 81 | 4 | 17 | 147 | 109 | 249 | 6.82e-20 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007638.t1 | AT3G45260 | 79.882 | 169 | 34 | 0 | 2 | 170 | 47 | 215 | 1.62e-105 | 321 |
| MS.gene007638.t1 | AT3G45260 | 79.882 | 169 | 34 | 0 | 2 | 170 | 47 | 215 | 1.62e-105 | 321 |
| MS.gene007638.t1 | AT1G55110 | 81.707 | 164 | 30 | 0 | 2 | 165 | 71 | 234 | 1.72e-102 | 313 |
| MS.gene007638.t1 | AT1G55110 | 81.707 | 164 | 30 | 0 | 2 | 165 | 71 | 234 | 1.72e-102 | 313 |
| MS.gene007638.t1 | AT1G55110 | 81.707 | 164 | 30 | 0 | 2 | 165 | 71 | 234 | 1.72e-102 | 313 |
| MS.gene007638.t1 | AT5G03150 | 65.652 | 230 | 66 | 6 | 3 | 222 | 62 | 288 | 2.63e-102 | 314 |
| MS.gene007638.t1 | AT5G60470 | 77.576 | 165 | 37 | 0 | 2 | 166 | 48 | 212 | 4.73e-101 | 310 |
| MS.gene007638.t1 | AT3G50700 | 83.871 | 155 | 24 | 1 | 3 | 157 | 43 | 196 | 4.97e-101 | 309 |
| MS.gene007638.t1 | AT5G60470 | 77.576 | 165 | 37 | 0 | 2 | 166 | 52 | 216 | 5.21e-101 | 310 |
| MS.gene007638.t1 | AT5G66730 | 85.161 | 155 | 22 | 1 | 3 | 157 | 41 | 194 | 7.02e-101 | 310 |
| MS.gene007638.t1 | AT1G03840 | 83.439 | 157 | 25 | 1 | 2 | 158 | 49 | 204 | 1.83e-100 | 310 |
| MS.gene007638.t1 | AT3G13810 | 82.500 | 160 | 28 | 0 | 2 | 161 | 59 | 218 | 5.08e-100 | 308 |
| MS.gene007638.t1 | AT3G13810 | 82.500 | 160 | 28 | 0 | 2 | 161 | 73 | 232 | 6.53e-100 | 308 |
| MS.gene007638.t1 | AT3G13810 | 82.500 | 160 | 28 | 0 | 2 | 161 | 78 | 237 | 6.55e-100 | 308 |
| MS.gene007638.t1 | AT3G13810 | 82.500 | 160 | 28 | 0 | 2 | 161 | 78 | 237 | 6.55e-100 | 308 |
| MS.gene007638.t1 | AT4G02670 | 58.776 | 245 | 87 | 4 | 2 | 237 | 61 | 300 | 8.12e-100 | 305 |
| MS.gene007638.t1 | AT4G02670 | 58.776 | 245 | 87 | 4 | 2 | 237 | 63 | 302 | 8.54e-100 | 305 |
| MS.gene007638.t1 | AT5G44160 | 82.500 | 160 | 27 | 1 | 2 | 161 | 45 | 203 | 1.87e-99 | 306 |
| MS.gene007638.t1 | AT2G02080 | 40.133 | 451 | 198 | 10 | 2 | 416 | 62 | 476 | 8.01e-99 | 306 |
| MS.gene007638.t1 | AT2G02080 | 40.133 | 451 | 198 | 10 | 2 | 416 | 62 | 476 | 8.01e-99 | 306 |
| MS.gene007638.t1 | AT2G02080 | 40.133 | 451 | 198 | 10 | 2 | 416 | 62 | 476 | 8.01e-99 | 306 |
| MS.gene007638.t1 | AT2G02080 | 40.133 | 451 | 198 | 10 | 2 | 416 | 62 | 476 | 8.01e-99 | 306 |
| MS.gene007638.t1 | AT5G60470 | 77.160 | 162 | 37 | 0 | 5 | 166 | 46 | 207 | 1.06e-98 | 303 |
| MS.gene007638.t1 | AT1G14580 | 78.750 | 160 | 33 | 1 | 2 | 161 | 61 | 219 | 4.20e-98 | 302 |
| MS.gene007638.t1 | AT1G14580 | 78.750 | 160 | 33 | 1 | 2 | 161 | 61 | 219 | 4.20e-98 | 302 |
| MS.gene007638.t1 | AT5G44160 | 44.931 | 434 | 190 | 15 | 4 | 416 | 8 | 413 | 8.69e-98 | 300 |
| MS.gene007638.t1 | AT1G03840 | 82.581 | 155 | 26 | 1 | 4 | 158 | 49 | 202 | 8.94e-98 | 303 |
| MS.gene007638.t1 | AT1G14580 | 78.750 | 160 | 33 | 1 | 2 | 161 | 75 | 233 | 9.30e-98 | 302 |
| MS.gene007638.t1 | AT3G13810 | 82.166 | 157 | 28 | 0 | 5 | 161 | 68 | 224 | 4.41e-97 | 301 |
| MS.gene007638.t1 | AT3G13810 | 82.166 | 157 | 28 | 0 | 5 | 161 | 82 | 238 | 6.47e-97 | 301 |
| MS.gene007638.t1 | AT2G02070 | 74.545 | 165 | 37 | 2 | 3 | 163 | 61 | 224 | 7.77e-94 | 295 |
| MS.gene007638.t1 | AT2G02070 | 74.545 | 165 | 37 | 2 | 3 | 163 | 61 | 224 | 7.77e-94 | 295 |
| MS.gene007638.t1 | AT2G02080 | 39.080 | 435 | 193 | 10 | 18 | 416 | 1 | 399 | 2.45e-89 | 279 |
| MS.gene007638.t1 | AT2G02080 | 39.080 | 435 | 193 | 10 | 18 | 416 | 1 | 399 | 2.45e-89 | 279 |
| MS.gene007638.t1 | AT1G68130 | 63.265 | 147 | 53 | 1 | 3 | 148 | 50 | 196 | 1.19e-68 | 224 |
| MS.gene007638.t1 | AT2G01940 | 62.416 | 149 | 55 | 1 | 3 | 150 | 53 | 201 | 4.22e-68 | 224 |
| MS.gene007638.t1 | AT1G25250 | 62.838 | 148 | 53 | 2 | 3 | 148 | 42 | 189 | 6.45e-68 | 222 |
| MS.gene007638.t1 | AT1G25250 | 62.585 | 147 | 53 | 2 | 4 | 148 | 20 | 166 | 6.73e-67 | 218 |
| MS.gene007638.t1 | AT2G01940 | 61.333 | 150 | 56 | 2 | 3 | 150 | 53 | 202 | 3.22e-64 | 214 |
| MS.gene007638.t1 | AT1G68130 | 61.818 | 110 | 41 | 1 | 40 | 148 | 1 | 110 | 3.23e-45 | 160 |
| MS.gene007638.t1 | AT2G01940 | 61.607 | 112 | 42 | 1 | 40 | 150 | 1 | 112 | 6.46e-45 | 160 |
| MS.gene007638.t1 | AT1G25250 | 62.162 | 111 | 40 | 2 | 40 | 148 | 1 | 111 | 9.55e-45 | 158 |
| MS.gene007638.t1 | AT1G34370 | 33.714 | 175 | 103 | 4 | 3 | 164 | 14 | 188 | 1.01e-24 | 103 |
| MS.gene007638.t1 | AT1G34370 | 33.714 | 175 | 103 | 4 | 3 | 164 | 224 | 398 | 2.85e-24 | 105 |
| MS.gene007638.t1 | AT1G34370 | 33.714 | 175 | 103 | 4 | 3 | 164 | 224 | 398 | 2.85e-24 | 105 |
| MS.gene007638.t1 | AT5G22890 | 33.987 | 153 | 88 | 4 | 8 | 147 | 202 | 354 | 5.40e-23 | 100 |
| MS.gene007638.t1 | AT1G13290 | 35.484 | 155 | 89 | 6 | 17 | 161 | 95 | 248 | 2.90e-20 | 91.3 |
| MS.gene007638.t1 | AT1G51220 | 32.317 | 164 | 93 | 5 | 17 | 172 | 172 | 325 | 5.82e-20 | 91.3 |
| MS.gene007638.t1 | AT3G20880 | 35.252 | 139 | 81 | 4 | 17 | 147 | 250 | 387 | 3.92e-19 | 89.7 |
| MS.gene007638.t1 | AT1G08290 | 38.519 | 135 | 73 | 4 | 22 | 147 | 179 | 312 | 4.00e-19 | 88.6 |
| MS.gene007638.t1 | AT3G57670 | 35.252 | 139 | 81 | 4 | 17 | 147 | 211 | 348 | 1.18e-18 | 87.8 |
| MS.gene007638.t1 | AT1G34790 | 36.691 | 139 | 79 | 4 | 17 | 147 | 139 | 276 | 1.33e-18 | 86.7 |
Find 77 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAATAAGTTGGTGAATT+TGG | 0.142711 | 4.4:+44353862 | MS.gene007638:CDS |
| CAAGAACTTGGTGAGTTTAA+TGG | 0.196940 | 4.4:+44354133 | MS.gene007638:CDS |
| AGATTGAACTGCATATTTCT+TGG | 0.249648 | 4.4:-44352735 | None:intergenic |
| TCAAATTCAAACAATATGTT+TGG | 0.277577 | 4.4:+44353935 | MS.gene007638:CDS |
| GCCGATGAAGCTGCAAATTC+TGG | 0.302791 | 4.4:-44352523 | None:intergenic |
| TTTAATGGAATGGGATCATT+AGG | 0.305018 | 4.4:+44354148 | MS.gene007638:CDS |
| TGTGAATGGTACAAAGGATT+TGG | 0.314338 | 4.4:+44353961 | MS.gene007638:CDS |
| ACCACTTCTGATTCCGGATC+TGG | 0.324071 | 4.4:-44352425 | None:intergenic |
| CCATGAACCTTCTAGAGCTT+TGG | 0.326353 | 4.4:+44352640 | MS.gene007638:CDS |
| CAAATTCAAACAATATGTTT+GGG | 0.356792 | 4.4:+44353936 | MS.gene007638:CDS |
| AATAGACAAATGTATGATTC+AGG | 0.359404 | 4.4:+44354019 | MS.gene007638:CDS |
| CAGCAGCATTAAGCAACTTT+CGG | 0.370255 | 4.4:+44353336 | MS.gene007638:CDS |
| CATGAACCTTCTAGAGCTTT+GGG | 0.370674 | 4.4:+44352641 | MS.gene007638:CDS |
| AATCTCTTGTAAAACCCATT+TGG | 0.383514 | 4.4:-44354063 | None:intergenic |
| AGCAATAGCAGCACCAATCT+TGG | 0.398971 | 4.4:+44353890 | MS.gene007638:CDS |
| CGAAAGTTGCTTAATGCTGC+TGG | 0.400098 | 4.4:-44353335 | None:intergenic |
| CCAAAGCTCTAGAAGGTTCA+TGG | 0.410521 | 4.4:-44352640 | None:intergenic |
| AATAATCTCCAGAGCCAGTA+TGG | 0.415643 | 4.4:+44354172 | MS.gene007638:CDS |
| CTTGGTGAGTTTAATGGAAT+GGG | 0.417145 | 4.4:+44354139 | MS.gene007638:CDS |
| CTTTCTTTGCCAATGCTACA+TGG | 0.421741 | 4.4:+44353572 | MS.gene007638:CDS |
| GAAGACTGTGTTATTATCAT+TGG | 0.421766 | 4.4:-44353768 | None:intergenic |
| GCTGCAAATTCTGGTCTCTC+TGG | 0.424694 | 4.4:-44352514 | None:intergenic |
| GCTGTTACTGACAAATGATT+TGG | 0.431928 | 4.4:-44353695 | None:intergenic |
| AATATGCAGTTCAATCTGAT+TGG | 0.433651 | 4.4:+44352741 | MS.gene007638:CDS |
| CCACTTTCACATTGTTAATG+AGG | 0.436319 | 4.4:+44353802 | MS.gene007638:CDS |
| AAATCTCCCAAAGCTCTAGA+AGG | 0.438385 | 4.4:-44352647 | None:intergenic |
| ATGCAAACAATGGATGTGTT+TGG | 0.440568 | 4.4:+44353512 | MS.gene007638:CDS |
| GCTCTTTGCTTCAGCTTCCA+TGG | 0.444326 | 4.4:-44352560 | None:intergenic |
| TAAATACCCACCTCCAAGAT+TGG | 0.449616 | 4.4:-44353903 | None:intergenic |
| GTTGCAGAAAGAATCTCAAA+TGG | 0.449863 | 4.4:+44353724 | MS.gene007638:CDS |
| CAAAGATCAAATTCGAAAGA+AGG | 0.450162 | 4.4:+44352586 | MS.gene007638:CDS |
| TTATGTGAAATCTGCAACAA+GGG | 0.451384 | 4.4:+44352488 | MS.gene007638:CDS |
| TATGTCACCAAAGTCATTGA+TGG | 0.456254 | 4.4:+44352451 | MS.gene007638:CDS |
| TTTGCTTCAGCTTCCATGGT+AGG | 0.459248 | 4.4:-44352556 | None:intergenic |
| ACTTGGTGAGTTTAATGGAA+TGG | 0.460921 | 4.4:+44354138 | MS.gene007638:CDS |
| AGTAGTGTCCACCACCATAC+TGG | 0.466451 | 4.4:-44354186 | None:intergenic |
| GAAAACATGGTGAGAAGAAG+TGG | 0.467136 | 4.4:+44352696 | MS.gene007638:CDS |
| TTCATTACTCCATGTAGCAT+TGG | 0.470776 | 4.4:-44353581 | None:intergenic |
| CCTCATTAACAATGTGAAAG+TGG | 0.472482 | 4.4:-44353802 | None:intergenic |
| TTTGTCGCCATCAATGACTT+TGG | 0.484591 | 4.4:-44352458 | None:intergenic |
| ACCAGAATTTGCAGCTTCAT+CGG | 0.488033 | 4.4:+44352522 | MS.gene007638:CDS |
| ATAGCAACCACTTCTGATTC+CGG | 0.489329 | 4.4:-44352431 | None:intergenic |
| TGGTGCACACAAGTCTTCTC+AGG | 0.500242 | 4.4:-44352620 | None:intergenic |
| AGAGCTTTGGGAGATTTGAC+AGG | 0.501432 | 4.4:+44352653 | MS.gene007638:CDS |
| AGCAGCACCAATCTTGGAGG+TGG | 0.501855 | 4.4:+44353896 | MS.gene007638:CDS |
| AAAGCTCATAGCAAGATTTG+TGG | 0.506969 | 4.4:+44352764 | MS.gene007638:CDS |
| TGCAGATTTCACATAAGAAA+CGG | 0.507472 | 4.4:-44352481 | None:intergenic |
| GTCCACCACCATACTGGCTC+TGG | 0.507855 | 4.4:-44354180 | None:intergenic |
| GAATAAGTTGGTGAATTTGG+AGG | 0.513790 | 4.4:+44353865 | MS.gene007638:CDS |
| AACATCATCAGAACCACCAT+TGG | 0.518482 | 4.4:+44353445 | MS.gene007638:CDS |
| AATATGTTTGGGATTGTGAA+TGG | 0.518566 | 4.4:+44353947 | MS.gene007638:CDS |
| CTCCAGAGCCAGTATGGTGG+TGG | 0.533266 | 4.4:+44354178 | MS.gene007638:CDS |
| AAATGTATGATTCAGGTTCA+AGG | 0.535524 | 4.4:+44354026 | MS.gene007638:CDS |
| TTCTGAAATAATGCAAACAA+TGG | 0.536311 | 4.4:+44353502 | MS.gene007638:CDS |
| AATAAGTTGGTGAATTTGGA+GGG | 0.537676 | 4.4:+44353866 | MS.gene007638:CDS |
| TTGCAGAAAGAATCTCAAAT+GGG | 0.545569 | 4.4:+44353725 | MS.gene007638:CDS |
| TACAAAGGATTTGGAACATG+TGG | 0.546663 | 4.4:+44353970 | MS.gene007638:CDS |
| CTTATGTGAAATCTGCAACA+AGG | 0.550563 | 4.4:+44352487 | MS.gene007638:CDS |
| CACATGAATGAATCCAGATC+CGG | 0.553014 | 4.4:+44352412 | None:intergenic |
| ACATCATCAGAACCACCATT+GGG | 0.553100 | 4.4:+44353446 | MS.gene007638:CDS |
| TCCGAGTGAGACTGAAAACC+AGG | 0.561734 | 4.4:-44353407 | None:intergenic |
| TTTGCGTAATTTCCCAATGG+TGG | 0.572407 | 4.4:-44353458 | None:intergenic |
| AATAGCAGCACCAATCTTGG+AGG | 0.592274 | 4.4:+44353893 | MS.gene007638:CDS |
| TGGGATTGTGAATGGTACAA+AGG | 0.593396 | 4.4:+44353955 | MS.gene007638:CDS |
| AAGTGAAGAGTTGAATAAGT+TGG | 0.597167 | 4.4:+44353853 | MS.gene007638:CDS |
| ATGTTTGCGTAATTTCCCAA+TGG | 0.598060 | 4.4:-44353461 | None:intergenic |
| AATCTCAAATGGGATCTACA+AGG | 0.601252 | 4.4:+44353735 | MS.gene007638:CDS |
| AGAGAGTACAAATGTGATTG+TGG | 0.604424 | 4.4:+44352791 | MS.gene007638:CDS |
| GGCGAGGACACAACCTACCA+TGG | 0.608097 | 4.4:+44352543 | MS.gene007638:CDS |
| TCCAGATCCGGAATCAGAAG+TGG | 0.621390 | 4.4:+44352424 | MS.gene007638:CDS |
| GCAGCACCAATCTTGGAGGT+GGG | 0.638474 | 4.4:+44353897 | MS.gene007638:CDS |
| AAACATTATAGTAGAAAACA+TGG | 0.647572 | 4.4:+44352683 | MS.gene007638:CDS |
| AATTTGCAGCTTCATCGGCG+AGG | 0.683827 | 4.4:+44352527 | MS.gene007638:CDS |
| TTATTATAATTCATCCACTG+TGG | 0.687050 | 4.4:-44353542 | None:intergenic |
| AATCTCCAGAGCCAGTATGG+TGG | 0.695447 | 4.4:+44354175 | MS.gene007638:CDS |
| ACAAAGTGCAAAGATAACAA+CGG | 0.712713 | 4.4:+44353310 | MS.gene007638:CDS |
| TGTTTGGATCACAACCACAG+TGG | 0.815009 | 4.4:+44353528 | MS.gene007638:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAACTTAATGTATTTAGA+AGG | - | chr4.4:44353109-44353128 | None:intergenic | 15.0% |
| !!! | TTTGGAATAAATAATAAATG+AGG | + | chr4.4:44353175-44353194 | MS.gene007638:intron | 15.0% |
| !! | AAACATTATAGTAGAAAACA+TGG | + | chr4.4:44352683-44352702 | MS.gene007638:CDS | 20.0% |
| !! | AGATAGTAAATATATATACC+TGG | - | chr4.4:44352828-44352847 | None:intergenic | 20.0% |
| !! | CAAATTCAAACAATATGTTT+GGG | + | chr4.4:44353936-44353955 | MS.gene007638:CDS | 20.0% |
| !! | CCATTAAAATCATGAAATTA+AGG | - | chr4.4:44352996-44353015 | None:intergenic | 20.0% |
| !! | TCAAAAGAAAAAAACCAAAT+GGG | + | chr4.4:44354049-44354068 | MS.gene007638:CDS | 20.0% |
| !! | TCAAATTCAAACAATATGTT+TGG | + | chr4.4:44353935-44353954 | MS.gene007638:CDS | 20.0% |
| !!! | CCTTAATTTCATGATTTTAA+TGG | + | chr4.4:44352993-44353012 | MS.gene007638:intron | 20.0% |
| !!! | TAATTTCATGATTTTAATGG+CGG | + | chr4.4:44352996-44353015 | MS.gene007638:intron | 20.0% |
| ! | AATAGACAAATGTATGATTC+AGG | + | chr4.4:44354019-44354038 | MS.gene007638:CDS | 25.0% |
| ! | ATTATGTGTGTTAACAAATC+AGG | + | chr4.4:44353240-44353259 | MS.gene007638:intron | 25.0% |
| ! | GTCAAAAGAAAAAAACCAAA+TGG | + | chr4.4:44354048-44354067 | MS.gene007638:CDS | 25.0% |
| ! | TAATTGAAGGAATGTTTGTT+TGG | + | chr4.4:44353157-44353176 | MS.gene007638:intron | 25.0% |
| ! | TTATTATAATTCATCCACTG+TGG | - | chr4.4:44353545-44353564 | None:intergenic | 25.0% |
| !! | GTTTTACAAGAGATTTTCTT+GGG | + | chr4.4:44354071-44354090 | MS.gene007638:CDS | 25.0% |
| !! | TTTTACAAGAGATTTTCTTG+GGG | + | chr4.4:44354072-44354091 | MS.gene007638:CDS | 25.0% |
| !!! | CAATTTCACAACTACTTTTT+CGG | - | chr4.4:44353043-44353062 | None:intergenic | 25.0% |
| !!! | TTCTGAAATAATGCAAACAA+TGG | + | chr4.4:44353502-44353521 | MS.gene007638:CDS | 25.0% |
| AAAAGTAGTTGTGAAATTGG+TGG | + | chr4.4:44353044-44353063 | MS.gene007638:intron | 30.0% | |
| AAAGTAGTTGTGAAATTGGT+GGG | + | chr4.4:44353045-44353064 | MS.gene007638:intron | 30.0% | |
| AAGTGAAGAGTTGAATAAGT+TGG | + | chr4.4:44353853-44353872 | MS.gene007638:CDS | 30.0% | |
| AATATGCAGTTCAATCTGAT+TGG | + | chr4.4:44352741-44352760 | MS.gene007638:CDS | 30.0% | |
| AATCTCTTGTAAAACCCATT+TGG | - | chr4.4:44354066-44354085 | None:intergenic | 30.0% | |
| ACAAAGTGCAAAGATAACAA+CGG | + | chr4.4:44353310-44353329 | MS.gene007638:CDS | 30.0% | |
| AGATTGAACTGCATATTTCT+TGG | - | chr4.4:44352738-44352757 | None:intergenic | 30.0% | |
| CAAAGATCAAATTCGAAAGA+AGG | + | chr4.4:44352586-44352605 | MS.gene007638:CDS | 30.0% | |
| CATGTGACAGATATAATTGA+AGG | + | chr4.4:44353144-44353163 | MS.gene007638:intron | 30.0% | |
| CGAAAAAGTAGTTGTGAAAT+TGG | + | chr4.4:44353041-44353060 | MS.gene007638:intron | 30.0% | |
| GGAAAAATATGAGGAATTCT+TGG | - | chr4.4:44353389-44353408 | None:intergenic | 30.0% | |
| TGAAAACCAGGAAAAATATG+AGG | - | chr4.4:44353398-44353417 | None:intergenic | 30.0% | |
| TGCAGATTTCACATAAGAAA+CGG | - | chr4.4:44352484-44352503 | None:intergenic | 30.0% | |
| TTATGTGAAATCTGCAACAA+GGG | + | chr4.4:44352488-44352507 | MS.gene007638:CDS | 30.0% | |
| TTGCAGAAAGAATCTCAAAT+GGG | + | chr4.4:44353725-44353744 | MS.gene007638:CDS | 30.0% | |
| TTTAAATTGCAGCAGTCTAA+AGG | - | chr4.4:44353084-44353103 | None:intergenic | 30.0% | |
| TTTAATGGAATGGGATCATT+AGG | + | chr4.4:44354148-44354167 | MS.gene007638:CDS | 30.0% | |
| ! | AAATGTATGATTCAGGTTCA+AGG | + | chr4.4:44354026-44354045 | MS.gene007638:CDS | 30.0% |
| ! | AATATGTTTGGGATTGTGAA+TGG | + | chr4.4:44353947-44353966 | MS.gene007638:CDS | 30.0% |
| ! | AGAATTCCTCATATTTTTCC+TGG | + | chr4.4:44353389-44353408 | MS.gene007638:CDS | 30.0% |
| ! | GAAGACTGTGTTATTATCAT+TGG | - | chr4.4:44353771-44353790 | None:intergenic | 30.0% |
| ! | GGTTTTACAAGAGATTTTCT+TGG | + | chr4.4:44354070-44354089 | MS.gene007638:CDS | 30.0% |
| !! | AATAAGTTGGTGAATTTGGA+GGG | + | chr4.4:44353866-44353885 | MS.gene007638:CDS | 30.0% |
| !! | GTTGAATAAGTTGGTGAATT+TGG | + | chr4.4:44353862-44353881 | MS.gene007638:CDS | 30.0% |
| AAAGCTCATAGCAAGATTTG+TGG | + | chr4.4:44352764-44352783 | MS.gene007638:CDS | 35.0% | |
| AAGTAGTTGTGAAATTGGTG+GGG | + | chr4.4:44353046-44353065 | MS.gene007638:intron | 35.0% | |
| AATCTCAAATGGGATCTACA+AGG | + | chr4.4:44353735-44353754 | MS.gene007638:CDS | 35.0% | |
| ATGCAAACAATGGATGTGTT+TGG | + | chr4.4:44353512-44353531 | MS.gene007638:CDS | 35.0% | |
| ATGTTTGCGTAATTTCCCAA+TGG | - | chr4.4:44353464-44353483 | None:intergenic | 35.0% | |
| CCACTTTCACATTGTTAATG+AGG | + | chr4.4:44353802-44353821 | MS.gene007638:CDS | 35.0% | |
| CCTCATTAACAATGTGAAAG+TGG | - | chr4.4:44353805-44353824 | None:intergenic | 35.0% | |
| CTTATGTGAAATCTGCAACA+AGG | + | chr4.4:44352487-44352506 | MS.gene007638:CDS | 35.0% | |
| CTTGGTGAGTTTAATGGAAT+GGG | + | chr4.4:44354139-44354158 | MS.gene007638:CDS | 35.0% | |
| GCTGTTACTGACAAATGATT+TGG | - | chr4.4:44353698-44353717 | None:intergenic | 35.0% | |
| GTTGCAGAAAGAATCTCAAA+TGG | + | chr4.4:44353724-44353743 | MS.gene007638:CDS | 35.0% | |
| TATGTCACCAAAGTCATTGA+TGG | + | chr4.4:44352451-44352470 | MS.gene007638:CDS | 35.0% | |
| TGTGAATGGTACAAAGGATT+TGG | + | chr4.4:44353961-44353980 | MS.gene007638:CDS | 35.0% | |
| TGTGTGTTAACAAATCAGGA+AGG | + | chr4.4:44353244-44353263 | MS.gene007638:intron | 35.0% | |
| TTCATTACTCCATGTAGCAT+TGG | - | chr4.4:44353584-44353603 | None:intergenic | 35.0% | |
| ! | ACTTGGTGAGTTTAATGGAA+TGG | + | chr4.4:44354138-44354157 | MS.gene007638:CDS | 35.0% |
| ! | AGAGAGTACAAATGTGATTG+TGG | + | chr4.4:44352791-44352810 | MS.gene007638:CDS | 35.0% |
| ! | CAAGAACTTGGTGAGTTTAA+TGG | + | chr4.4:44354133-44354152 | MS.gene007638:CDS | 35.0% |
| ! | TACAAAGGATTTGGAACATG+TGG | + | chr4.4:44353970-44353989 | MS.gene007638:CDS | 35.0% |
| !! | GAATAAGTTGGTGAATTTGG+AGG | + | chr4.4:44353865-44353884 | MS.gene007638:CDS | 35.0% |
| !!! | AACTACTTTTTCGGTTGCAT+TGG | - | chr4.4:44353034-44353053 | None:intergenic | 35.0% |
| AACATCATCAGAACCACCAT+TGG | + | chr4.4:44353445-44353464 | MS.gene007638:CDS | 40.0% | |
| AATAATCTCCAGAGCCAGTA+TGG | + | chr4.4:44354172-44354191 | MS.gene007638:CDS | 40.0% | |
| ACATCATCAGAACCACCATT+GGG | + | chr4.4:44353446-44353465 | MS.gene007638:CDS | 40.0% | |
| ACCAGAATTTGCAGCTTCAT+CGG | + | chr4.4:44352522-44352541 | MS.gene007638:CDS | 40.0% | |
| ATAGCAACCACTTCTGATTC+CGG | - | chr4.4:44352434-44352453 | None:intergenic | 40.0% | |
| CAGCAGCATTAAGCAACTTT+CGG | + | chr4.4:44353336-44353355 | MS.gene007638:CDS | 40.0% | |
| CCAAGTTCTTGCTGCAAAAA+AGG | - | chr4.4:44354124-44354143 | None:intergenic | 40.0% | |
| CTTTCTTTGCCAATGCTACA+TGG | + | chr4.4:44353572-44353591 | MS.gene007638:CDS | 40.0% | |
| GAAAACATGGTGAGAAGAAG+TGG | + | chr4.4:44352696-44352715 | MS.gene007638:CDS | 40.0% | |
| TAAATACCCACCTCCAAGAT+TGG | - | chr4.4:44353906-44353925 | None:intergenic | 40.0% | |
| TCAGTAGTGGCTGCAATATA+CGG | + | chr4.4:44352921-44352940 | MS.gene007638:intron | 40.0% | |
| TCTCAAATCCAACGTGTTCT+TGG | - | chr4.4:44352867-44352886 | None:intergenic | 40.0% | |
| TGGGATTGTGAATGGTACAA+AGG | + | chr4.4:44353955-44353974 | MS.gene007638:CDS | 40.0% | |
| TTTGCGTAATTTCCCAATGG+TGG | - | chr4.4:44353461-44353480 | None:intergenic | 40.0% | |
| TTTGTCGCCATCAATGACTT+TGG | - | chr4.4:44352461-44352480 | None:intergenic | 40.0% | |
| ! | ACAAGAGATTTTCTTGGGGT+TGG | + | chr4.4:44354076-44354095 | MS.gene007638:CDS | 40.0% |
| ! | ATTGTGGCACAATTTTCTCC+AGG | + | chr4.4:44352807-44352826 | MS.gene007638:CDS | 40.0% |
| !! | AAATCTCCCAAAGCTCTAGA+AGG | - | chr4.4:44352650-44352669 | None:intergenic | 40.0% |
| !! | CATGAACCTTCTAGAGCTTT+GGG | + | chr4.4:44352641-44352660 | MS.gene007638:CDS | 40.0% |
| !!! | CCTTTTTTGCAGCAAGAACT+TGG | + | chr4.4:44354121-44354140 | MS.gene007638:CDS | 40.0% |
| AATAGCAGCACCAATCTTGG+AGG | + | chr4.4:44353893-44353912 | MS.gene007638:CDS | 45.0% | |
| AGCAATAGCAGCACCAATCT+TGG | + | chr4.4:44353890-44353909 | MS.gene007638:CDS | 45.0% | |
| CAGATCCAATGACTCAGTAG+TGG | + | chr4.4:44352908-44352927 | MS.gene007638:intron | 45.0% | |
| CGAAAGTTGCTTAATGCTGC+TGG | - | chr4.4:44353338-44353357 | None:intergenic | 45.0% | |
| TGTTTGGATCACAACCACAG+TGG | + | chr4.4:44353528-44353547 | MS.gene007638:CDS | 45.0% | |
| TTTAATGGCGGTTGCAATCG+CGG | + | chr4.4:44353008-44353027 | MS.gene007638:intron | 45.0% | |
| TTTGCTTCAGCTTCCATGGT+AGG | - | chr4.4:44352559-44352578 | None:intergenic | 45.0% | |
| !! | AGAGCTTTGGGAGATTTGAC+AGG | + | chr4.4:44352653-44352672 | MS.gene007638:CDS | 45.0% |
| !! | CCAAAGCTCTAGAAGGTTCA+TGG | - | chr4.4:44352643-44352662 | None:intergenic | 45.0% |
| !! | CCATGAACCTTCTAGAGCTT+TGG | + | chr4.4:44352640-44352659 | MS.gene007638:CDS | 45.0% |
| !! | TCCTGGTTTTCAGTCTCACT+CGG | + | chr4.4:44353406-44353425 | MS.gene007638:CDS | 45.0% |
| !!! | GGAACATGTGGTTTTGTCTG+TGG | + | chr4.4:44353982-44354001 | MS.gene007638:CDS | 45.0% |
| !! | ATTAAGTTAAATTAATTTAA+TGG | + | chr4.4:44353118-44353137 | MS.gene007638:intron | 5.0% |
| AATCTCCAGAGCCAGTATGG+TGG | + | chr4.4:44354175-44354194 | MS.gene007638:CDS | 50.0% | |
| AATTTGCAGCTTCATCGGCG+AGG | + | chr4.4:44352527-44352546 | MS.gene007638:CDS | 50.0% | |
| ACCACTTCTGATTCCGGATC+TGG | - | chr4.4:44352428-44352447 | None:intergenic | 50.0% | |
| AGTAGTGTCCACCACCATAC+TGG | - | chr4.4:44354189-44354208 | None:intergenic | 50.0% | |
| GCCGATGAAGCTGCAAATTC+TGG | - | chr4.4:44352526-44352545 | None:intergenic | 50.0% | |
| GCTCTTTGCTTCAGCTTCCA+TGG | - | chr4.4:44352563-44352582 | None:intergenic | 50.0% | |
| GCTGCAAATTCTGGTCTCTC+TGG | - | chr4.4:44352517-44352536 | None:intergenic | 50.0% | |
| TCCAGATCCGGAATCAGAAG+TGG | + | chr4.4:44352424-44352443 | MS.gene007638:CDS | 50.0% | |
| TCCGAGTGAGACTGAAAACC+AGG | - | chr4.4:44353410-44353429 | None:intergenic | 50.0% | |
| TGCAGCCACTACTGAGTCAT+TGG | - | chr4.4:44352916-44352935 | None:intergenic | 50.0% | |
| TGCAGTCACCAAGAACACGT+TGG | + | chr4.4:44352856-44352875 | MS.gene007638:intron | 50.0% | |
| TGGTGCACACAAGTCTTCTC+AGG | - | chr4.4:44352623-44352642 | None:intergenic | 50.0% | |
| ! | CGTGTTCTTGGTGACTGCAA+TGG | - | chr4.4:44352855-44352874 | None:intergenic | 50.0% |
| AGCAGCACCAATCTTGGAGG+TGG | + | chr4.4:44353896-44353915 | MS.gene007638:CDS | 55.0% | |
| GCAGCACCAATCTTGGAGGT+GGG | + | chr4.4:44353897-44353916 | MS.gene007638:CDS | 55.0% | |
| CTCCAGAGCCAGTATGGTGG+TGG | + | chr4.4:44354178-44354197 | MS.gene007638:CDS | 60.0% | |
| GGCGAGGACACAACCTACCA+TGG | + | chr4.4:44352543-44352562 | MS.gene007638:CDS | 60.0% | |
| !! | GTCCACCACCATACTGGCTC+TGG | - | chr4.4:44354183-44354202 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 44352419 | 44354213 | 44352419 | ID=MS.gene007638 |
| chr4.4 | mRNA | 44352419 | 44354213 | 44352419 | ID=MS.gene007638.t1;Parent=MS.gene007638 |
| chr4.4 | exon | 44352419 | 44352828 | 44352419 | ID=MS.gene007638.t1.exon1;Parent=MS.gene007638.t1 |
| chr4.4 | CDS | 44352419 | 44352828 | 44352419 | ID=cds.MS.gene007638.t1;Parent=MS.gene007638.t1 |
| chr4.4 | exon | 44353262 | 44354213 | 44353262 | ID=MS.gene007638.t1.exon2;Parent=MS.gene007638.t1 |
| chr4.4 | CDS | 44353262 | 44354213 | 44353262 | ID=cds.MS.gene007638.t1;Parent=MS.gene007638.t1 |
| Gene Sequence |
| Protein sequence |
