Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007694.t1 | RHN60701.1 | 96.5 | 317 | 8 | 1 | 1 | 317 | 353 | 666 | 7.90E-149 | 536.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007694.t1 | Q9SJJ3 | 45.1 | 319 | 105 | 7 | 1 | 317 | 334 | 584 | 4.4e-55 | 216.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007694.t1 | A0A396I7I3 | 96.5 | 317 | 8 | 1 | 1 | 317 | 353 | 666 | 5.7e-149 | 536.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene007694.t1 | TF | HB-BELL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007694.t1 | MTR_2g095050 | 55.263 | 304 | 95 | 11 | 1 | 283 | 329 | 612 | 4.26e-95 | 294 |
| MS.gene007694.t1 | MTR_4g019450 | 55.238 | 210 | 66 | 5 | 1 | 210 | 265 | 446 | 5.30e-68 | 223 |
| MS.gene007694.t1 | MTR_7g065050 | 41.092 | 348 | 133 | 10 | 1 | 317 | 210 | 516 | 1.37e-67 | 220 |
| MS.gene007694.t1 | MTR_8g078480 | 51.691 | 207 | 79 | 5 | 1 | 204 | 474 | 662 | 3.38e-63 | 214 |
| MS.gene007694.t1 | MTR_7g106320 | 45.643 | 241 | 103 | 4 | 1 | 240 | 260 | 473 | 6.45e-63 | 211 |
| MS.gene007694.t1 | MTR_5g018860 | 50.235 | 213 | 82 | 5 | 1 | 208 | 423 | 616 | 2.05e-61 | 208 |
| MS.gene007694.t1 | MTR_1g057790 | 53.846 | 182 | 62 | 2 | 1 | 182 | 248 | 407 | 6.21e-60 | 202 |
| MS.gene007694.t1 | MTR_1g023050 | 38.944 | 303 | 127 | 6 | 1 | 279 | 265 | 533 | 6.84e-60 | 202 |
| MS.gene007694.t1 | MTR_8g098815 | 53.804 | 184 | 66 | 3 | 1 | 184 | 268 | 432 | 9.72e-59 | 199 |
| MS.gene007694.t1 | MTR_4g051532 | 47.196 | 214 | 87 | 3 | 1 | 212 | 304 | 493 | 4.10e-58 | 199 |
| MS.gene007694.t1 | MTR_3g112290 | 48.500 | 200 | 84 | 4 | 1 | 200 | 247 | 427 | 1.86e-55 | 186 |
| MS.gene007694.t1 | MTR_3g112300 | 48.718 | 195 | 71 | 2 | 1 | 195 | 254 | 419 | 6.95e-55 | 186 |
| MS.gene007694.t1 | MTR_3g112300 | 48.718 | 195 | 71 | 2 | 1 | 195 | 254 | 419 | 1.59e-54 | 187 |
| MS.gene007694.t1 | MTR_3g112300 | 45.238 | 168 | 63 | 2 | 1 | 168 | 254 | 392 | 1.52e-39 | 143 |
| MS.gene007694.t1 | MTR_1g016490 | 50.000 | 102 | 51 | 0 | 117 | 218 | 420 | 521 | 1.42e-33 | 129 |
| MS.gene007694.t1 | MTR_3g112300 | 41.497 | 147 | 57 | 2 | 1 | 147 | 254 | 371 | 4.42e-28 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007694.t1 | AT2G27990 | 45.201 | 323 | 99 | 10 | 1 | 317 | 334 | 584 | 2.63e-72 | 234 |
| MS.gene007694.t1 | AT5G02030 | 53.695 | 203 | 59 | 3 | 1 | 192 | 241 | 419 | 3.64e-65 | 215 |
| MS.gene007694.t1 | AT4G34610 | 53.927 | 191 | 64 | 4 | 1 | 191 | 218 | 384 | 2.59e-62 | 206 |
| MS.gene007694.t1 | AT4G34610 | 53.927 | 191 | 64 | 4 | 1 | 191 | 218 | 384 | 2.59e-62 | 206 |
| MS.gene007694.t1 | AT4G34610 | 53.927 | 191 | 64 | 4 | 1 | 191 | 218 | 384 | 2.59e-62 | 206 |
| MS.gene007694.t1 | AT4G34610 | 53.927 | 191 | 64 | 4 | 1 | 191 | 218 | 384 | 2.59e-62 | 206 |
| MS.gene007694.t1 | AT2G35940 | 54.396 | 182 | 66 | 3 | 1 | 182 | 282 | 446 | 3.05e-62 | 209 |
| MS.gene007694.t1 | AT2G35940 | 54.396 | 182 | 66 | 3 | 1 | 182 | 282 | 446 | 3.05e-62 | 209 |
| MS.gene007694.t1 | AT2G35940 | 54.396 | 182 | 66 | 3 | 1 | 182 | 282 | 446 | 3.05e-62 | 209 |
| MS.gene007694.t1 | AT4G36870 | 55.319 | 188 | 68 | 4 | 1 | 188 | 394 | 565 | 5.07e-62 | 210 |
| MS.gene007694.t1 | AT4G36870 | 55.319 | 188 | 68 | 4 | 1 | 188 | 394 | 565 | 5.07e-62 | 210 |
| MS.gene007694.t1 | AT2G16400 | 37.888 | 322 | 171 | 5 | 1 | 317 | 185 | 482 | 3.35e-61 | 202 |
| MS.gene007694.t1 | AT1G75410 | 47.805 | 205 | 85 | 4 | 1 | 204 | 247 | 430 | 1.01e-57 | 194 |
| MS.gene007694.t1 | AT1G75410 | 47.805 | 205 | 85 | 4 | 1 | 204 | 247 | 430 | 1.01e-57 | 194 |
| MS.gene007694.t1 | AT1G19700 | 48.691 | 191 | 80 | 4 | 1 | 191 | 249 | 421 | 5.27e-56 | 190 |
| MS.gene007694.t1 | AT1G19700 | 48.691 | 191 | 80 | 4 | 1 | 191 | 249 | 421 | 5.27e-56 | 190 |
| MS.gene007694.t1 | AT1G19700 | 48.691 | 191 | 80 | 4 | 1 | 191 | 249 | 421 | 5.27e-56 | 190 |
| MS.gene007694.t1 | AT1G19700 | 48.691 | 191 | 80 | 4 | 1 | 191 | 249 | 421 | 5.27e-56 | 190 |
| MS.gene007694.t1 | AT1G19700 | 48.691 | 191 | 80 | 4 | 1 | 191 | 249 | 421 | 5.27e-56 | 190 |
| MS.gene007694.t1 | AT2G27220 | 47.340 | 188 | 61 | 3 | 1 | 188 | 146 | 295 | 6.09e-55 | 185 |
| MS.gene007694.t1 | AT2G27220 | 47.340 | 188 | 61 | 3 | 1 | 188 | 146 | 295 | 6.09e-55 | 185 |
| MS.gene007694.t1 | AT2G27220 | 47.340 | 188 | 61 | 3 | 1 | 188 | 164 | 313 | 1.19e-54 | 184 |
| MS.gene007694.t1 | AT5G41410 | 48.705 | 193 | 83 | 3 | 1 | 193 | 287 | 463 | 4.05e-54 | 186 |
| MS.gene007694.t1 | AT2G23760 | 41.667 | 240 | 72 | 4 | 1 | 188 | 320 | 543 | 1.07e-51 | 181 |
| MS.gene007694.t1 | AT1G75430 | 42.723 | 213 | 94 | 3 | 1 | 206 | 99 | 290 | 1.20e-51 | 172 |
| MS.gene007694.t1 | AT4G36870 | 52.071 | 169 | 65 | 4 | 1 | 169 | 394 | 546 | 5.37e-48 | 169 |
| MS.gene007694.t1 | AT4G36870 | 51.497 | 167 | 65 | 4 | 1 | 167 | 394 | 544 | 1.68e-46 | 165 |
| MS.gene007694.t1 | AT1G75410 | 45.833 | 168 | 70 | 3 | 1 | 168 | 247 | 393 | 1.24e-42 | 152 |
| MS.gene007694.t1 | AT4G32980 | 35.263 | 190 | 87 | 4 | 1 | 188 | 284 | 439 | 2.74e-32 | 125 |
| MS.gene007694.t1 | AT4G32980 | 35.263 | 190 | 87 | 4 | 1 | 188 | 284 | 439 | 2.74e-32 | 125 |
| MS.gene007694.t1 | AT2G27990 | 45.578 | 147 | 50 | 4 | 1 | 147 | 334 | 450 | 6.42e-29 | 115 |
| MS.gene007694.t1 | AT1G75430 | 37.748 | 151 | 69 | 2 | 1 | 147 | 99 | 228 | 7.59e-25 | 101 |
Find 56 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTCAGGTAACCCTCTC+TGG | 0.199963 | 4.3:+42886659 | None:intergenic |
| ATCACTGTTGAATCCATATT+TGG | 0.216643 | 4.3:+42884796 | None:intergenic |
| AGAATTGCCACTGATCTTTC+AGG | 0.234528 | 4.3:+42886646 | None:intergenic |
| TGAAAAGCAATTTCAGTGTT+TGG | 0.266354 | 4.3:-42884932 | MS.gene007694:CDS |
| CCACCATTTGCATTTGTTGA+TGG | 0.290812 | 4.3:+42887007 | None:intergenic |
| TGATCAGATTACACCAAATA+TGG | 0.305163 | 4.3:-42884809 | MS.gene007694:CDS |
| GCAATTTCAGTGTTTGGAAA+TGG | 0.322344 | 4.3:-42884926 | MS.gene007694:CDS |
| AAACTTACATGTCAAGTATT+AGG | 0.326456 | 4.3:-42886868 | MS.gene007694:CDS |
| AACCTCAACAACAGCATGTT+TGG | 0.326715 | 4.3:-42886687 | MS.gene007694:CDS |
| TTGGAAATGGGGTCATCTTC+AGG | 0.334212 | 4.3:-42884913 | MS.gene007694:CDS |
| CAATTTCAGTGTTTGGAAAT+GGG | 0.339082 | 4.3:-42884925 | MS.gene007694:CDS |
| CAAAAGAACAAATCTGGATC+TGG | 0.344773 | 4.3:-42886733 | MS.gene007694:CDS |
| GTAGACCTTAGACATCAATT+TGG | 0.356780 | 4.3:-42884673 | MS.gene007694:CDS |
| ATAAATAATAGGTATCAAAT+TGG | 0.363771 | 4.3:-42885083 | MS.gene007694:intron |
| TGGATCCGTGTCGCTGACTT+TGG | 0.383478 | 4.3:-42884752 | MS.gene007694:CDS |
| AGCTACACCATACATTTCAT+TGG | 0.390026 | 4.3:-42886950 | MS.gene007694:CDS |
| AGCTTACAAAAGAACAAATC+TGG | 0.398649 | 4.3:-42886739 | MS.gene007694:CDS |
| TAAACGCTCGAGTCCGTGTA+TGG | 0.405578 | 4.3:-42885056 | MS.gene007694:CDS |
| GCTCTCCAAATTGATGTCTA+AGG | 0.413976 | 4.3:+42884668 | None:intergenic |
| GGATCCGTGTCGCTGACTTT+GGG | 0.426105 | 4.3:-42884751 | MS.gene007694:CDS |
| CAGTGGCAATTCTTAAAGCT+TGG | 0.440006 | 4.3:-42886636 | MS.gene007694:CDS |
| AGGCATTAACAATGCTGAAA+AGG | 0.442184 | 4.3:-42884893 | MS.gene007694:CDS |
| CACATGTTAGCTACTCAAAC+AGG | 0.444126 | 4.3:-42885798 | MS.gene007694:CDS |
| TCATCATTTGAGTCAGTAGC+TGG | 0.449229 | 4.3:-42886982 | MS.gene007694:CDS |
| TTACTGCTACTTGTGGTTGT+TGG | 0.462089 | 4.3:+42886826 | None:intergenic |
| TCTTTCAGGTAACCCTCTCT+GGG | 0.462284 | 4.3:+42886660 | None:intergenic |
| CTAATTAACCCACAAAATCA+TGG | 0.474328 | 4.3:+42884638 | None:intergenic |
| CTCCAAACATGCTGTTGTTG+AGG | 0.475472 | 4.3:+42886685 | None:intergenic |
| CAACCATTGGTTTCCATACA+CGG | 0.478260 | 4.3:+42885043 | None:intergenic |
| ATGTGTATTTCTTCAACCAT+TGG | 0.483354 | 4.3:+42885030 | None:intergenic |
| ATACACATGCTTGAATCAAA+AGG | 0.494309 | 4.3:-42885015 | MS.gene007694:CDS |
| AAATATGGATTCAACAGTGA+TGG | 0.505789 | 4.3:-42884794 | MS.gene007694:CDS |
| ATGTGTTTATCAGTGTCTGT+AGG | 0.521595 | 4.3:+42885816 | None:intergenic |
| ATACCATCAACAAATGCAAA+TGG | 0.525199 | 4.3:-42887010 | MS.gene007694:CDS |
| AATTTCAGTGTTTGGAAATG+GGG | 0.530029 | 4.3:-42884924 | MS.gene007694:CDS |
| AAAAGAACAAATCTGGATCT+GGG | 0.535669 | 4.3:-42886732 | MS.gene007694:CDS |
| TGTGTTTATCAGTGTCTGTA+GGG | 0.537038 | 4.3:+42885817 | None:intergenic |
| AATATGGATTCAACAGTGAT+GGG | 0.554086 | 4.3:-42884793 | MS.gene007694:CDS |
| CTCAACAACAGCATGTTTGG+AGG | 0.557669 | 4.3:-42886684 | MS.gene007694:CDS |
| TTTAGAGCCAATGAAATGTA+TGG | 0.569263 | 4.3:+42886943 | None:intergenic |
| GACACGGATCCACGTTGATA+CGG | 0.573397 | 4.3:+42884763 | None:intergenic |
| TTATTACAAATGAAGAGCAA+TGG | 0.577328 | 4.3:-42884870 | MS.gene007694:CDS |
| ATGTTTGGAGGCCCCAGAGA+GGG | 0.586157 | 4.3:-42886672 | MS.gene007694:CDS |
| CTGACTTTGGGTCTGAGACA+CGG | 0.590530 | 4.3:-42884739 | MS.gene007694:CDS |
| AAATTTATTACTGCTACTTG+TGG | 0.591603 | 4.3:+42886819 | None:intergenic |
| TTAATAATATTCAAGAGAAG+AGG | 0.603624 | 4.3:-42884846 | MS.gene007694:CDS |
| TTGATATATAGGTTACAAGA+AGG | 0.611148 | 4.3:-42887041 | None:intergenic |
| GCAGCAACAGTTGCAGCACG+AGG | 0.625331 | 4.3:-42884695 | MS.gene007694:CDS |
| AGTCCGTGTATGGAAACCAA+TGG | 0.633260 | 4.3:-42885046 | MS.gene007694:CDS |
| AACAGGTCTATCAAGAAACC+AGG | 0.637050 | 4.3:-42885781 | MS.gene007694:intron |
| CCATCAACAAATGCAAATGG+TGG | 0.649972 | 4.3:-42887007 | MS.gene007694:CDS |
| AGGGTTACCTGAAAGATCAG+TGG | 0.678566 | 4.3:-42886653 | MS.gene007694:CDS |
| TACATGTCAAGTATTAGGAG+AGG | 0.684996 | 4.3:-42886863 | MS.gene007694:CDS |
| CAGACCCAAAGTCAGCGACA+CGG | 0.685959 | 4.3:+42884747 | None:intergenic |
| CATGTTTGGAGGCCCCAGAG+AGG | 0.701806 | 4.3:-42886673 | MS.gene007694:CDS |
| CTTTCAGGTAACCCTCTCTG+GGG | 0.726576 | 4.3:+42886661 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATAATAATATGACA+AGG | - | chr4.3:42884886-42884905 | MS.gene007694:CDS | 10.0% |
| !! | TTAAATTATATAAGTATGTA+CGG | - | chr4.3:42885119-42885138 | MS.gene007694:intron | 10.0% |
| !!! | AAAAAACATTTTTTAAAATG+GGG | + | chr4.3:42885209-42885228 | None:intergenic | 10.0% |
| !!! | CAAAAAACATTTTTTAAAAT+GGG | + | chr4.3:42885210-42885229 | None:intergenic | 10.0% |
| !!! | TAAAAAATTTTGTAATTTGT+AGG | + | chr4.3:42885384-42885403 | None:intergenic | 10.0% |
| !!! | TGTTTTATGAATATAATAAA+AGG | - | chr4.3:42885786-42885805 | MS.gene007694:CDS | 10.0% |
| !! | AAATTGTAGAAATTATTGTA+AGG | - | chr4.3:42885423-42885442 | MS.gene007694:intron | 15.0% |
| !! | ATAAATAATAGGTATCAAAT+TGG | - | chr4.3:42886589-42886608 | MS.gene007694:intron | 15.0% |
| !! | ATTTGATACCTATTATTTAT+CGG | + | chr4.3:42886589-42886608 | None:intergenic | 15.0% |
| !!! | AACATAAGATATATTGTTTT+AGG | + | chr4.3:42885770-42885789 | None:intergenic | 15.0% |
| !!! | AATTATTGATTTGAAAATCA+AGG | + | chr4.3:42886030-42886049 | None:intergenic | 15.0% |
| !!! | ACTTTGTTTTTTTGAAAATA+TGG | + | chr4.3:42885180-42885199 | None:intergenic | 15.0% |
| !!! | ATTTCAATGCATAATTTTTT+AGG | + | chr4.3:42885744-42885763 | None:intergenic | 15.0% |
| !!! | CCAAAAAACATTTTTTAAAA+TGG | + | chr4.3:42885211-42885230 | None:intergenic | 15.0% |
| !!! | CCATTTTAAAAAATGTTTTT+TGG | - | chr4.3:42885208-42885227 | MS.gene007694:intron | 15.0% |
| !!! | TTTCAATGCATAATTTTTTA+GGG | + | chr4.3:42885743-42885762 | None:intergenic | 15.0% |
| !!! | TTTTATATTATTTCTCTTGA+TGG | - | chr4.3:42885962-42885981 | MS.gene007694:intron | 15.0% |
| !! | ACAATAAAAACAAAGTAGTA+CGG | + | chr4.3:42886203-42886222 | None:intergenic | 20.0% |
| !! | TGTAATAACCGATAAATAAT+AGG | - | chr4.3:42886578-42886597 | MS.gene007694:intron | 20.0% |
| !! | TGTATGAAAATGTATTATGA+AGG | - | chr4.3:42885680-42885699 | MS.gene007694:intron | 20.0% |
| !! | TTAATAATATTCAAGAGAAG+AGG | - | chr4.3:42886826-42886845 | MS.gene007694:CDS | 20.0% |
| !!! | AACAACGAGTTAATTTTATA+AGG | - | chr4.3:42885452-42885471 | MS.gene007694:intron | 20.0% |
| !!! | ATTTTCTGCAATTTGAATTA+TGG | - | chr4.3:42886278-42886297 | MS.gene007694:intron | 20.0% |
| !!! | CTTCTGACTTTTTTAAAATA+GGG | - | chr4.3:42885254-42885273 | MS.gene007694:intron | 20.0% |
| !!! | TAATACATTTTCATACAACA+TGG | + | chr4.3:42885677-42885696 | None:intergenic | 20.0% |
| !!! | TCTTCTGACTTTTTTAAAAT+AGG | - | chr4.3:42885253-42885272 | MS.gene007694:intron | 20.0% |
| !!! | TTCTGACTTTTTTAAAATAG+GGG | - | chr4.3:42885255-42885274 | MS.gene007694:intron | 20.0% |
| ! | AAACTTACATGTCAAGTATT+AGG | - | chr4.3:42884804-42884823 | MS.gene007694:CDS | 25.0% |
| ! | AATGAAAACCAAAACAATCA+AGG | + | chr4.3:42886125-42886144 | None:intergenic | 25.0% |
| ! | ACATGGTTAAATATGGTATT+AGG | + | chr4.3:42885660-42885679 | None:intergenic | 25.0% |
| ! | ATGCAAGATTTATTTCACTT+GGG | + | chr4.3:42885504-42885523 | None:intergenic | 25.0% |
| ! | CAATTTACAAAACTACATGT+AGG | + | chr4.3:42885409-42885428 | None:intergenic | 25.0% |
| ! | CATGGTTAAATATGGTATTA+GGG | + | chr4.3:42885659-42885678 | None:intergenic | 25.0% |
| ! | TCAGAACAATGATAAAAATG+AGG | - | chr4.3:42886698-42886717 | MS.gene007694:CDS | 25.0% |
| ! | TCATACAACATGGTTAAATA+TGG | + | chr4.3:42885667-42885686 | None:intergenic | 25.0% |
| ! | TTATTACAAATGAAGAGCAA+TGG | - | chr4.3:42886802-42886821 | MS.gene007694:CDS | 25.0% |
| !! | AAATTTATTACTGCTACTTG+TGG | + | chr4.3:42884856-42884875 | None:intergenic | 25.0% |
| !! | ATGTACGGATTAAATATGTT+TGG | - | chr4.3:42885134-42885153 | MS.gene007694:intron | 25.0% |
| !! | ATTTGAAAACTTCGAAGTTT+TGG | + | chr4.3:42886091-42886110 | None:intergenic | 25.0% |
| !! | ATTTGTTCTTTTGTAAGCTA+TGG | + | chr4.3:42884932-42884951 | None:intergenic | 25.0% |
| !! | TAATTGTTCCTTGATTGTTT+TGG | - | chr4.3:42886114-42886133 | MS.gene007694:intron | 25.0% |
| !! | TTTGAAAACTTCGAAGTTTT+GGG | + | chr4.3:42886090-42886109 | None:intergenic | 25.0% |
| !!! | AATGCATAATTTTTTAGGGT+GGG | + | chr4.3:42885739-42885758 | None:intergenic | 25.0% |
| !!! | TATATTGTGTCATTTTGTTG+AGG | - | chr4.3:42886502-42886521 | MS.gene007694:intron | 25.0% |
| AAAAGAACAAATCTGGATCT+GGG | - | chr4.3:42884940-42884959 | MS.gene007694:CDS | 30.0% | |
| AAATATGGATTCAACAGTGA+TGG | - | chr4.3:42886878-42886897 | MS.gene007694:CDS | 30.0% | |
| AATATGGATTCAACAGTGAT+GGG | - | chr4.3:42886879-42886898 | MS.gene007694:CDS | 30.0% | |
| AATTTCAGTGTTTGGAAATG+GGG | - | chr4.3:42886748-42886767 | MS.gene007694:CDS | 30.0% | |
| AGCTTACAAAAGAACAAATC+TGG | - | chr4.3:42884933-42884952 | MS.gene007694:CDS | 30.0% | |
| ATACACATGCTTGAATCAAA+AGG | - | chr4.3:42886657-42886676 | MS.gene007694:CDS | 30.0% | |
| ATACCATCAACAAATGCAAA+TGG | - | chr4.3:42884662-42884681 | MS.gene007694:CDS | 30.0% | |
| ATCACTGTTGAATCCATATT+TGG | + | chr4.3:42886879-42886898 | None:intergenic | 30.0% | |
| ATGTGTATTTCTTCAACCAT+TGG | + | chr4.3:42886645-42886664 | None:intergenic | 30.0% | |
| CAATTTCAGTGTTTGGAAAT+GGG | - | chr4.3:42886747-42886766 | MS.gene007694:CDS | 30.0% | |
| GAAGAAAAAAAGTGAAGTTG+AGG | + | chr4.3:42885235-42885254 | None:intergenic | 30.0% | |
| GATGCAAGATTTATTTCACT+TGG | + | chr4.3:42885505-42885524 | None:intergenic | 30.0% | |
| TAGTCTTCAAAAACATTCCT+AGG | + | chr4.3:42886484-42886503 | None:intergenic | 30.0% | |
| TCAATAATTGCACTCTTGAA+TGG | - | chr4.3:42886041-42886060 | MS.gene007694:intron | 30.0% | |
| TGAAAAGCAATTTCAGTGTT+TGG | - | chr4.3:42886740-42886759 | MS.gene007694:CDS | 30.0% | |
| TGATCAGATTACACCAAATA+TGG | - | chr4.3:42886863-42886882 | MS.gene007694:CDS | 30.0% | |
| TTCTATTTGACATACACTCT+TGG | - | chr4.3:42885988-42886007 | MS.gene007694:intron | 30.0% | |
| ! | GATCTGTGATAGCATTTTTA+AGG | + | chr4.3:42884779-42884798 | None:intergenic | 30.0% |
| ! | TGCTGTTCAATTTCATTTTC+AGG | - | chr4.3:42885830-42885849 | MS.gene007694:intron | 30.0% |
| ! | TTTAGAGCCAATGAAATGTA+TGG | + | chr4.3:42884732-42884751 | None:intergenic | 30.0% |
| !!! | ATGCATAATTTTTTAGGGTG+GGG | + | chr4.3:42885738-42885757 | None:intergenic | 30.0% |
| !!! | CAATGCATAATTTTTTAGGG+TGG | + | chr4.3:42885740-42885759 | None:intergenic | 30.0% |
| AATAGTAGTCTAGCTGCAAA+TGG | + | chr4.3:42886261-42886280 | None:intergenic | 35.0% | |
| ACCATCAAATCAAGATCAGA+CGG | + | chr4.3:42886402-42886421 | None:intergenic | 35.0% | |
| AGAGTGACAGAGAAAACATA+CGG | + | chr4.3:42885083-42885102 | None:intergenic | 35.0% | |
| AGCTACACCATACATTTCAT+TGG | - | chr4.3:42884722-42884741 | MS.gene007694:CDS | 35.0% | |
| AGGCATTAACAATGCTGAAA+AGG | - | chr4.3:42886779-42886798 | MS.gene007694:CDS | 35.0% | |
| ATGTGTTTATCAGTGTCTGT+AGG | + | chr4.3:42885859-42885878 | None:intergenic | 35.0% | |
| ATTTGACATACACTCTTGGA+TGG | - | chr4.3:42885992-42886011 | MS.gene007694:intron | 35.0% | |
| CAAAAGAACAAATCTGGATC+TGG | - | chr4.3:42884939-42884958 | MS.gene007694:CDS | 35.0% | |
| CACATTGCAGTTATGCAATT+TGG | + | chr4.3:42886425-42886444 | None:intergenic | 35.0% | |
| GCAATTTCAGTGTTTGGAAA+TGG | - | chr4.3:42886746-42886765 | MS.gene007694:CDS | 35.0% | |
| GTAGACCTTAGACATCAATT+TGG | - | chr4.3:42886999-42887018 | MS.gene007694:CDS | 35.0% | |
| TACATGTCAAGTATTAGGAG+AGG | - | chr4.3:42884809-42884828 | MS.gene007694:CDS | 35.0% | |
| TAGTAAAAAACACTTGCGCA+CGG | - | chr4.3:42885598-42885617 | MS.gene007694:intron | 35.0% | |
| TCACTTGGGCATTATAGAAT+TGG | + | chr4.3:42885490-42885509 | None:intergenic | 35.0% | |
| TCTTCAAAAACATTCCTAGG+AGG | + | chr4.3:42886481-42886500 | None:intergenic | 35.0% | |
| TGTGTTTATCAGTGTCTGTA+GGG | + | chr4.3:42885858-42885877 | None:intergenic | 35.0% | |
| ! | CACATGATCCATGATTTTGT+GGG | - | chr4.3:42887026-42887045 | MS.gene007694:CDS | 35.0% |
| ! | TGCATGTGAATTTTTACTGC+TGG | - | chr4.3:42886547-42886566 | MS.gene007694:intron | 35.0% |
| !!! | TGCATAATTTTTTAGGGTGG+GGG | + | chr4.3:42885737-42885756 | None:intergenic | 35.0% |
| AAAAATGAGGCATGCAGAGT+CGG | - | chr4.3:42886711-42886730 | MS.gene007694:CDS | 40.0% | |
| AACAGGTCTATCAAGAAACC+AGG | - | chr4.3:42885891-42885910 | MS.gene007694:intron | 40.0% | |
| AACCTCAACAACAGCATGTT+TGG | - | chr4.3:42884985-42885004 | MS.gene007694:CDS | 40.0% | |
| AATGTGAGTCATCCATCTGA+TGG | + | chr4.3:42886336-42886355 | None:intergenic | 40.0% | |
| AGAATTGCCACTGATCTTTC+AGG | + | chr4.3:42885029-42885048 | None:intergenic | 40.0% | |
| CAAAAACATTCCTAGGAGGA+GGG | + | chr4.3:42886477-42886496 | None:intergenic | 40.0% | |
| CACATGTTAGCTACTCAAAC+AGG | - | chr4.3:42885874-42885893 | MS.gene007694:intron | 40.0% | |
| CAGTGGCAATTCTTAAAGCT+TGG | - | chr4.3:42885036-42885055 | MS.gene007694:CDS | 40.0% | |
| CCATATTGCTTAGCTGCAAA+TGG | + | chr4.3:42886308-42886327 | None:intergenic | 40.0% | |
| CCATCAACAAATGCAAATGG+TGG | - | chr4.3:42884665-42884684 | MS.gene007694:CDS | 40.0% | |
| CCATTTGCAGCTAAGCAATA+TGG | - | chr4.3:42886305-42886324 | MS.gene007694:intron | 40.0% | |
| GCTCTCCAAATTGATGTCTA+AGG | + | chr4.3:42887007-42887026 | None:intergenic | 40.0% | |
| TCAAAAACATTCCTAGGAGG+AGG | + | chr4.3:42886478-42886497 | None:intergenic | 40.0% | |
| TCATCATTTGAGTCAGTAGC+TGG | - | chr4.3:42884690-42884709 | MS.gene007694:CDS | 40.0% | |
| ! | CCACCATTTGCATTTGTTGA+TGG | + | chr4.3:42884668-42884687 | None:intergenic | 40.0% |
| ! | GCACATGATCCATGATTTTG+TGG | - | chr4.3:42887025-42887044 | MS.gene007694:CDS | 40.0% |
| ! | TCCGTCTGATCTTGATTTGA+TGG | - | chr4.3:42886398-42886417 | MS.gene007694:intron | 40.0% |
| ! | TTACTGCTACTTGTGGTTGT+TGG | + | chr4.3:42884849-42884868 | None:intergenic | 40.0% |
| !! | CAACCATTGGTTTCCATACA+CGG | + | chr4.3:42886632-42886651 | None:intergenic | 40.0% |
| !!! | TTTTTTAGGGTGGGGGAAAT+TGG | + | chr4.3:42885730-42885749 | None:intergenic | 40.0% |
| AATATGGACCGTCCATCAGA+TGG | - | chr4.3:42886321-42886340 | MS.gene007694:intron | 45.0% | |
| AGGGTTACCTGAAAGATCAG+TGG | - | chr4.3:42885019-42885038 | MS.gene007694:CDS | 45.0% | |
| AGGTCTATCAAGAAACCAGG+TGG | - | chr4.3:42885894-42885913 | MS.gene007694:intron | 45.0% | |
| AGTCCGTGTATGGAAACCAA+TGG | - | chr4.3:42886626-42886645 | MS.gene007694:CDS | 45.0% | |
| CTCAACAACAGCATGTTTGG+AGG | - | chr4.3:42884988-42885007 | MS.gene007694:CDS | 45.0% | |
| CTCCAAACATGCTGTTGTTG+AGG | + | chr4.3:42884990-42885009 | None:intergenic | 45.0% | |
| GGGATTAAGATCACTTGCAG+CGG | + | chr4.3:42886457-42886476 | None:intergenic | 45.0% | |
| GGTCTATCAAGAAACCAGGT+GGG | - | chr4.3:42885895-42885914 | MS.gene007694:intron | 45.0% | |
| GTCTATCAAGAAACCAGGTG+GGG | - | chr4.3:42885896-42885915 | MS.gene007694:intron | 45.0% | |
| TCTATCAAGAAACCAGGTGG+GGG | - | chr4.3:42885897-42885916 | MS.gene007694:intron | 45.0% | |
| TGAGTCATCCATCTGATGGA+CGG | + | chr4.3:42886332-42886351 | None:intergenic | 45.0% | |
| TGATCTTAATCCCTCCTCCT+AGG | - | chr4.3:42886464-42886483 | MS.gene007694:intron | 45.0% | |
| TTGGAAATGGGGTCATCTTC+AGG | - | chr4.3:42886759-42886778 | MS.gene007694:CDS | 45.0% | |
| ! | ATCTTTCAGGTAACCCTCTC+TGG | + | chr4.3:42885016-42885035 | None:intergenic | 45.0% |
| ! | TCTTTCAGGTAACCCTCTCT+GGG | + | chr4.3:42885015-42885034 | None:intergenic | 45.0% |
| !! | GGTTTTATGCCGTATCAACG+TGG | - | chr4.3:42886900-42886919 | MS.gene007694:CDS | 45.0% |
| AAAAGAAGTAGACCCCCACC+TGG | + | chr4.3:42885912-42885931 | None:intergenic | 50.0% | |
| GACACGGATCCACGTTGATA+CGG | + | chr4.3:42886912-42886931 | None:intergenic | 50.0% | |
| GGGGGAAATTGGTCAGTAGT+AGG | + | chr4.3:42885719-42885738 | None:intergenic | 50.0% | |
| TAAACGCTCGAGTCCGTGTA+TGG | - | chr4.3:42886616-42886635 | MS.gene007694:CDS | 50.0% | |
| TAAGATCACTTGCAGCGGCA+AGG | + | chr4.3:42886452-42886471 | None:intergenic | 50.0% | |
| ! | CTGACTTTGGGTCTGAGACA+CGG | - | chr4.3:42886933-42886952 | MS.gene007694:CDS | 50.0% |
| ! | CTTTCAGGTAACCCTCTCTG+GGG | + | chr4.3:42885014-42885033 | None:intergenic | 50.0% |
| ATGTTTGGAGGCCCCAGAGA+GGG | - | chr4.3:42885000-42885019 | MS.gene007694:CDS | 55.0% | |
| CAGACCCAAAGTCAGCGACA+CGG | + | chr4.3:42886928-42886947 | None:intergenic | 55.0% | |
| !! | GGATCCGTGTCGCTGACTTT+GGG | - | chr4.3:42886921-42886940 | MS.gene007694:CDS | 55.0% |
| !! | TGGATCCGTGTCGCTGACTT+TGG | - | chr4.3:42886920-42886939 | MS.gene007694:CDS | 55.0% |
| CATGTTTGGAGGCCCCAGAG+AGG | - | chr4.3:42884999-42885018 | MS.gene007694:CDS | 60.0% | |
| GCAGCAACAGTTGCAGCACG+AGG | - | chr4.3:42886977-42886996 | MS.gene007694:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 42884642 | 42887052 | 42884642 | ID=MS.gene007694 |
| chr4.3 | mRNA | 42884642 | 42887052 | 42884642 | ID=MS.gene007694.t1;Parent=MS.gene007694 |
| chr4.3 | exon | 42886613 | 42887052 | 42886613 | ID=MS.gene007694.t1.exon1;Parent=MS.gene007694.t1 |
| chr4.3 | CDS | 42886613 | 42887052 | 42886613 | ID=cds.MS.gene007694.t1;Parent=MS.gene007694.t1 |
| chr4.3 | exon | 42885782 | 42885842 | 42885782 | ID=MS.gene007694.t1.exon2;Parent=MS.gene007694.t1 |
| chr4.3 | CDS | 42885782 | 42885842 | 42885782 | ID=cds.MS.gene007694.t1;Parent=MS.gene007694.t1 |
| chr4.3 | exon | 42884642 | 42885094 | 42884642 | ID=MS.gene007694.t1.exon3;Parent=MS.gene007694.t1 |
| chr4.3 | CDS | 42884642 | 42885094 | 42884642 | ID=cds.MS.gene007694.t1;Parent=MS.gene007694.t1 |
| Gene Sequence |
| Protein sequence |
