Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007744.t1 | XP_003606331.2 | 95.7 | 326 | 12 | 2 | 1 | 325 | 11 | 335 | 7.90E-144 | 520 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007744.t1 | Q0V7X4 | 52.3 | 321 | 137 | 9 | 8 | 323 | 8 | 317 | 8.2e-57 | 222.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007744.t1 | G7JN98 | 95.7 | 326 | 12 | 2 | 1 | 325 | 11 | 335 | 5.7e-144 | 520.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene007744.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007744.t1 | MTR_4g057270 | 95.092 | 326 | 14 | 2 | 1 | 325 | 11 | 335 | 0.0 | 590 |
| MS.gene007744.t1 | MTR_2g084280 | 65.000 | 320 | 88 | 9 | 13 | 323 | 9 | 313 | 3.37e-133 | 381 |
| MS.gene007744.t1 | MTR_8g064700 | 32.065 | 184 | 118 | 5 | 130 | 309 | 235 | 415 | 1.20e-19 | 89.4 |
| MS.gene007744.t1 | MTR_3g030700 | 28.829 | 222 | 149 | 5 | 98 | 312 | 153 | 372 | 1.32e-18 | 85.9 |
| MS.gene007744.t1 | MTR_3g104100 | 33.133 | 166 | 92 | 6 | 138 | 292 | 194 | 351 | 8.07e-18 | 83.6 |
| MS.gene007744.t1 | MTR_2g038040 | 31.481 | 162 | 98 | 2 | 138 | 287 | 51 | 211 | 2.97e-17 | 80.1 |
| MS.gene007744.t1 | MTR_8g067280 | 31.429 | 175 | 104 | 5 | 132 | 292 | 452 | 624 | 1.29e-16 | 80.9 |
| MS.gene007744.t1 | MTR_1g112680 | 30.405 | 148 | 76 | 3 | 130 | 250 | 308 | 455 | 4.23e-16 | 79.3 |
| MS.gene007744.t1 | MTR_5g030430 | 31.126 | 151 | 91 | 4 | 143 | 282 | 497 | 645 | 3.27e-15 | 76.6 |
| MS.gene007744.t1 | MTR_2g081040 | 32.738 | 168 | 90 | 7 | 138 | 292 | 176 | 333 | 3.48e-15 | 75.9 |
| MS.gene007744.t1 | MTR_3g498695 | 43.902 | 82 | 46 | 0 | 124 | 205 | 283 | 364 | 6.36e-15 | 75.5 |
| MS.gene007744.t1 | MTR_3g498695 | 43.902 | 82 | 46 | 0 | 124 | 205 | 283 | 364 | 6.37e-15 | 75.5 |
| MS.gene007744.t1 | MTR_4g091910 | 32.903 | 155 | 93 | 5 | 138 | 290 | 46 | 191 | 7.35e-15 | 72.8 |
| MS.gene007744.t1 | MTR_7g083900 | 53.448 | 58 | 27 | 0 | 138 | 195 | 285 | 342 | 1.89e-13 | 71.2 |
| MS.gene007744.t1 | MTR_7g083900 | 53.448 | 58 | 27 | 0 | 138 | 195 | 285 | 342 | 1.94e-13 | 71.2 |
| MS.gene007744.t1 | MTR_8g027495 | 51.923 | 52 | 25 | 0 | 143 | 194 | 462 | 513 | 3.56e-13 | 70.5 |
| MS.gene007744.t1 | MTR_7g117670 | 51.923 | 52 | 25 | 0 | 143 | 194 | 406 | 457 | 5.73e-13 | 69.7 |
| MS.gene007744.t1 | MTR_8g024790 | 28.571 | 196 | 115 | 6 | 103 | 282 | 247 | 433 | 2.09e-12 | 67.8 |
| MS.gene007744.t1 | MTR_4g097950 | 27.737 | 137 | 85 | 3 | 141 | 267 | 72 | 204 | 3.74e-12 | 65.9 |
| MS.gene007744.t1 | MTR_8g024770 | 35.417 | 96 | 54 | 1 | 105 | 192 | 237 | 332 | 1.19e-11 | 65.5 |
| MS.gene007744.t1 | MTR_7g096350 | 26.190 | 210 | 115 | 8 | 108 | 305 | 312 | 493 | 1.80e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007744.t1 | AT2G28160 | 52.294 | 327 | 130 | 11 | 7 | 323 | 7 | 317 | 2.24e-96 | 288 |
| MS.gene007744.t1 | AT2G28160 | 51.402 | 321 | 130 | 11 | 7 | 317 | 7 | 311 | 4.60e-92 | 277 |
| MS.gene007744.t1 | AT5G57150 | 40.127 | 157 | 84 | 4 | 138 | 286 | 53 | 207 | 2.25e-24 | 99.4 |
| MS.gene007744.t1 | AT5G57150 | 40.127 | 157 | 84 | 4 | 138 | 286 | 54 | 208 | 2.43e-24 | 99.0 |
| MS.gene007744.t1 | AT5G57150 | 40.127 | 157 | 84 | 4 | 138 | 286 | 54 | 208 | 2.51e-24 | 99.4 |
| MS.gene007744.t1 | AT5G57150 | 40.127 | 157 | 84 | 4 | 138 | 286 | 53 | 207 | 4.35e-24 | 99.0 |
| MS.gene007744.t1 | AT5G57150 | 40.127 | 157 | 84 | 4 | 138 | 286 | 54 | 208 | 9.15e-24 | 98.6 |
| MS.gene007744.t1 | AT2G16910 | 35.260 | 173 | 86 | 3 | 137 | 284 | 312 | 483 | 1.26e-21 | 95.9 |
| MS.gene007744.t1 | AT4G29930 | 35.664 | 143 | 83 | 3 | 138 | 279 | 53 | 187 | 2.04e-20 | 88.6 |
| MS.gene007744.t1 | AT4G29930 | 34.395 | 157 | 89 | 3 | 138 | 292 | 53 | 197 | 4.83e-20 | 87.8 |
| MS.gene007744.t1 | AT4G29930 | 35.211 | 142 | 82 | 3 | 138 | 279 | 53 | 184 | 2.10e-19 | 85.9 |
| MS.gene007744.t1 | AT4G29930 | 30.857 | 175 | 100 | 3 | 138 | 292 | 53 | 226 | 4.61e-19 | 85.5 |
| MS.gene007744.t1 | AT4G29930 | 30.857 | 175 | 100 | 3 | 138 | 292 | 53 | 226 | 4.61e-19 | 85.5 |
| MS.gene007744.t1 | AT4G29930 | 31.481 | 162 | 90 | 3 | 138 | 279 | 53 | 213 | 1.53e-18 | 84.0 |
| MS.gene007744.t1 | AT4G29930 | 55.556 | 63 | 28 | 0 | 138 | 200 | 53 | 115 | 1.02e-16 | 77.4 |
| MS.gene007744.t1 | AT4G17880 | 30.769 | 156 | 99 | 4 | 132 | 282 | 406 | 557 | 6.49e-16 | 79.0 |
| MS.gene007744.t1 | AT1G01260 | 29.493 | 217 | 104 | 6 | 80 | 288 | 383 | 558 | 2.58e-15 | 77.0 |
| MS.gene007744.t1 | AT1G01260 | 29.493 | 217 | 104 | 6 | 80 | 288 | 383 | 558 | 2.58e-15 | 77.0 |
| MS.gene007744.t1 | AT1G01260 | 29.493 | 217 | 104 | 6 | 80 | 288 | 383 | 558 | 2.58e-15 | 77.0 |
| MS.gene007744.t1 | AT2G46510 | 48.101 | 79 | 38 | 1 | 132 | 207 | 385 | 463 | 3.77e-15 | 76.6 |
| MS.gene007744.t1 | AT1G10610 | 35.000 | 120 | 75 | 2 | 133 | 249 | 161 | 280 | 4.66e-15 | 75.5 |
| MS.gene007744.t1 | AT1G10610 | 35.000 | 120 | 75 | 2 | 133 | 249 | 228 | 347 | 7.71e-15 | 75.1 |
| MS.gene007744.t1 | AT1G10610 | 35.000 | 120 | 75 | 2 | 133 | 249 | 258 | 377 | 8.49e-15 | 75.1 |
| MS.gene007744.t1 | AT5G46760 | 27.225 | 191 | 123 | 7 | 104 | 282 | 374 | 560 | 1.17e-14 | 75.1 |
| MS.gene007744.t1 | AT1G12860 | 51.724 | 58 | 28 | 0 | 138 | 195 | 266 | 323 | 1.50e-13 | 71.2 |
| MS.gene007744.t1 | AT1G32640 | 30.573 | 157 | 99 | 5 | 132 | 282 | 442 | 594 | 1.53e-13 | 71.6 |
| MS.gene007744.t1 | AT1G12860 | 51.724 | 58 | 28 | 0 | 138 | 195 | 266 | 323 | 1.76e-13 | 71.2 |
| MS.gene007744.t1 | AT3G26744 | 51.724 | 58 | 28 | 0 | 138 | 195 | 306 | 363 | 2.99e-13 | 70.5 |
| MS.gene007744.t1 | AT3G26744 | 51.724 | 58 | 28 | 0 | 138 | 195 | 306 | 363 | 3.08e-13 | 70.5 |
| MS.gene007744.t1 | AT3G26744 | 51.724 | 58 | 28 | 0 | 138 | 195 | 306 | 363 | 3.08e-13 | 70.5 |
| MS.gene007744.t1 | AT3G26744 | 51.724 | 58 | 28 | 0 | 138 | 195 | 306 | 363 | 3.08e-13 | 70.5 |
| MS.gene007744.t1 | AT4G21330 | 25.654 | 191 | 134 | 3 | 106 | 294 | 4 | 188 | 1.16e-12 | 66.6 |
| MS.gene007744.t1 | AT5G46830 | 28.662 | 157 | 94 | 4 | 143 | 293 | 347 | 491 | 9.99e-12 | 66.2 |
| MS.gene007744.t1 | AT5G10570 | 34.000 | 150 | 71 | 4 | 127 | 267 | 134 | 264 | 2.00e-11 | 64.3 |
Find 56 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGTTCAGAATTCAAATT+TGG | 0.160318 | 4.4:+46002000 | MS.gene007744:CDS |
| AAATTTGGCAGGTTGATTTC+TGG | 0.184628 | 4.4:-46002360 | None:intergenic |
| AACCTCAGCCTTAAGCTTCT+TGG | 0.225200 | 4.4:-46001645 | None:intergenic |
| CAAAACTTTGATTCATTATA+AGG | 0.232350 | 4.4:-46000870 | None:intergenic |
| AATTGATCCTTGATGAGTTT+TGG | 0.235753 | 4.4:-46001696 | None:intergenic |
| ATCACCCATAGCTTTAAATT+TGG | 0.237169 | 4.4:-46002375 | None:intergenic |
| TGTTAAAATAGTATGCAATA+AGG | 0.282684 | 4.4:+46001925 | MS.gene007744:CDS |
| AAGTGTACCTTAGTTATATT+CGG | 0.298452 | 4.4:-46001210 | None:intergenic |
| GCTTTACGCATTGCGTTCTT+TGG | 0.305835 | 4.4:+46001185 | MS.gene007744:CDS |
| AAGCTTAAGGCTGAGGTTGC+AGG | 0.310327 | 4.4:+46001650 | MS.gene007744:CDS |
| TTGATGAATTGATCAAAGTT+TGG | 0.317687 | 4.4:-46000793 | None:intergenic |
| TTATCTATGTTGTGATCAAA+TGG | 0.384556 | 4.4:-46000925 | None:intergenic |
| ACCTGCCAAATTTAAAGCTA+TGG | 0.396521 | 4.4:+46002370 | MS.gene007744:CDS |
| CAATTCATCAATTTGATTCG+TGG | 0.404944 | 4.4:+46000805 | MS.gene007744:CDS |
| CGTAAAGCTTATCCTTCATT+CGG | 0.412112 | 4.4:-46001170 | None:intergenic |
| ATTATATGTATAGATGGATA+AGG | 0.414631 | 4.4:+46001571 | MS.gene007744:intron |
| GTTAAAATAGTATGCAATAA+GGG | 0.416472 | 4.4:+46001926 | MS.gene007744:CDS |
| ATGGATAAGGCTTCTATCAT+TGG | 0.423797 | 4.4:+46001584 | MS.gene007744:CDS |
| CCCATAGCTTTAAATTTGGC+AGG | 0.425488 | 4.4:-46002371 | None:intergenic |
| TTTGATCCTACTTCTTCACT+TGG | 0.449750 | 4.4:+46000961 | MS.gene007744:CDS |
| AAGGTATGAATTCAAAGCCT+TGG | 0.451801 | 4.4:-46002413 | None:intergenic |
| TGAAAATAGGTGAAAGACTC+TGG | 0.451976 | 4.4:+46002336 | MS.gene007744:intron |
| TAGTATGCAATAAGGGAGAA+AGG | 0.463194 | 4.4:+46001933 | MS.gene007744:CDS |
| AGTGTACCTTAGTTATATTC+GGG | 0.463592 | 4.4:-46001209 | None:intergenic |
| AATATGCAAGAAAATTGTCC+AGG | 0.466755 | 4.4:+46001760 | MS.gene007744:CDS |
| CTTTGGTTTCTGAGAGGAGG+AGG | 0.467532 | 4.4:+46001142 | MS.gene007744:CDS |
| TGTTGTTGTTGTTGCAGGAG+AGG | 0.472915 | 4.4:-46001052 | None:intergenic |
| AAATGATAGATCCAAGACTT+TGG | 0.473297 | 4.4:+46001125 | MS.gene007744:CDS |
| ATGTTGTGATCAAATGGGTT+TGG | 0.479555 | 4.4:-46000919 | None:intergenic |
| AATTTGGCCACTGTTTCTGA+TGG | 0.483700 | 4.4:+46002016 | MS.gene007744:CDS |
| TATCTATGTTGTGATCAAAT+GGG | 0.486497 | 4.4:-46000924 | None:intergenic |
| CCTCTCAGAAACCAAAGTCT+TGG | 0.490550 | 4.4:-46001136 | None:intergenic |
| ATTCAACTTACTAACAAAAG+TGG | 0.491348 | 4.4:+46001734 | MS.gene007744:CDS |
| ATCACAAGCCAAGAAGCTTA+AGG | 0.495865 | 4.4:+46001637 | MS.gene007744:CDS |
| TTTGGTCCCGAATATAACTA+AGG | 0.495980 | 4.4:+46001203 | MS.gene007744:CDS |
| CATCAATTTGATTCGTGGTG+AGG | 0.496224 | 4.4:+46000810 | MS.gene007744:CDS |
| TTAATGTTTGCTAGTGTCAC+CGG | 0.498905 | 4.4:-46000736 | None:intergenic |
| ATGTGTCAAGCGTGAAAAGA+AGG | 0.518768 | 4.4:-46002432 | None:intergenic |
| ATGTTTCAAGTGGATGAAAG+AGG | 0.519776 | 4.4:+46001896 | MS.gene007744:CDS |
| AGTATGCAATAAGGGAGAAA+GGG | 0.525003 | 4.4:+46001934 | MS.gene007744:CDS |
| CCTGCCAAATTTAAAGCTAT+GGG | 0.525800 | 4.4:+46002371 | MS.gene007744:CDS |
| AAAGAACCAAGTGAAGAAGT+AGG | 0.527298 | 4.4:-46000967 | None:intergenic |
| GAGGAGGCGAAGCCGAATGA+AGG | 0.530731 | 4.4:+46001158 | MS.gene007744:CDS |
| TGTTTCAAGTGGATGAAAGA+GGG | 0.533128 | 4.4:+46001897 | MS.gene007744:CDS |
| ATCACCACTTGTAGTTGTTG+TGG | 0.544215 | 4.4:-46001085 | None:intergenic |
| TTGTGATCAAATGGGTTTGG+AGG | 0.546978 | 4.4:-46000916 | None:intergenic |
| AGCCAAGAAGCTTAAGGCTG+AGG | 0.549244 | 4.4:+46001643 | MS.gene007744:CDS |
| AGACTTTGGTTTCTGAGAGG+AGG | 0.567716 | 4.4:+46001139 | MS.gene007744:CDS |
| GTAGATTGATATGTTTCAAG+TGG | 0.578490 | 4.4:+46001886 | MS.gene007744:intron |
| GCAGTGTCCAAAACTCATCA+AGG | 0.579680 | 4.4:+46001689 | MS.gene007744:CDS |
| CCAAGACTTTGGTTTCTGAG+AGG | 0.603254 | 4.4:+46001136 | MS.gene007744:CDS |
| GAATTAAGAGTAGAAAATGA+TGG | 0.612562 | 4.4:+46001018 | MS.gene007744:CDS |
| ATTACCACAACAACTACAAG+TGG | 0.612581 | 4.4:+46001081 | MS.gene007744:CDS |
| ATGGGTTTGGAGGAAATGAA+AGG | 0.630120 | 4.4:-46000906 | None:intergenic |
| TAGAAAACCATCAGAAACAG+TGG | 0.631132 | 4.4:-46002023 | None:intergenic |
| ATGCAATAAGGGAGAAAGGG+TGG | 0.649433 | 4.4:+46001937 | MS.gene007744:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAATTATATGTATAGA+TGG | + | chr4.4:46001565-46001584 | MS.gene007744:intron | 10.0% |
| !! | ATATATTTAACCTTAAATAG+AGG | - | chr4.4:46002080-46002099 | None:intergenic | 15.0% |
| !! | TATATTTAACCTTAAATAGA+GGG | - | chr4.4:46002079-46002098 | None:intergenic | 15.0% |
| !! | ACTAAAAAAACCTAAATGTT+AGG | + | chr4.4:46002239-46002258 | MS.gene007744:intron | 20.0% |
| !! | ATGTAATTTCATAATACGTA+GGG | + | chr4.4:46002197-46002216 | MS.gene007744:intron | 20.0% |
| !! | ATTATATGTATAGATGGATA+AGG | + | chr4.4:46001571-46001590 | MS.gene007744:intron | 20.0% |
| !! | CAAAACTTTGATTCATTATA+AGG | - | chr4.4:46000873-46000892 | None:intergenic | 20.0% |
| !! | CAGATAATGAAATAGAATAA+TGG | - | chr4.4:46002285-46002304 | None:intergenic | 20.0% |
| !! | CTAAAAAAACCTAAATGTTA+GGG | + | chr4.4:46002240-46002259 | MS.gene007744:intron | 20.0% |
| !! | GTTAAAATAGTATGCAATAA+GGG | + | chr4.4:46001926-46001945 | MS.gene007744:CDS | 20.0% |
| !! | TGTTAAAATAGTATGCAATA+AGG | + | chr4.4:46001925-46001944 | MS.gene007744:CDS | 20.0% |
| !!! | AAACAAAATTACATGCTTTT+AGG | + | chr4.4:46002165-46002184 | MS.gene007744:intron | 20.0% |
| !!! | AGATTTTGAAGTATCTAAAA+TGG | - | chr4.4:46001321-46001340 | None:intergenic | 20.0% |
| !!! | CTTCAAAATCTTTTATATTG+TGG | + | chr4.4:46001330-46001349 | MS.gene007744:intron | 20.0% |
| !!! | TTTTTATTACCCTAACATTT+AGG | - | chr4.4:46002252-46002271 | None:intergenic | 20.0% |
| ! | AAGTGTACCTTAGTTATATT+CGG | - | chr4.4:46001213-46001232 | None:intergenic | 25.0% |
| ! | AATATATCATGACGTAATTG+TGG | - | chr4.4:46001356-46001375 | None:intergenic | 25.0% |
| ! | AGCAATCTTCTTCTTATAAA+CGG | - | chr4.4:46001422-46001441 | None:intergenic | 25.0% |
| ! | ATTCAACTTACTAACAAAAG+TGG | + | chr4.4:46001734-46001753 | MS.gene007744:CDS | 25.0% |
| ! | CAATGTTCAGAATTCAAATT+TGG | + | chr4.4:46002000-46002019 | MS.gene007744:CDS | 25.0% |
| ! | CATGTAATTTCATAATACGT+AGG | + | chr4.4:46002196-46002215 | MS.gene007744:intron | 25.0% |
| ! | CTATATGTTACTATCCAAAA+TGG | + | chr4.4:46001466-46001485 | MS.gene007744:intron | 25.0% |
| ! | GAATTAAGAGTAGAAAATGA+TGG | + | chr4.4:46001018-46001037 | MS.gene007744:CDS | 25.0% |
| ! | TATCTATGTTGTGATCAAAT+GGG | - | chr4.4:46000927-46000946 | None:intergenic | 25.0% |
| ! | TGATATTTATCAAACAAACC+TGG | - | chr4.4:46001781-46001800 | None:intergenic | 25.0% |
| ! | TTATCTATGTTGTGATCAAA+TGG | - | chr4.4:46000928-46000947 | None:intergenic | 25.0% |
| ! | TTGATGAATTGATCAAAGTT+TGG | - | chr4.4:46000796-46000815 | None:intergenic | 25.0% |
| !! | ACAATGAATGTTAACCATTT+TGG | - | chr4.4:46001483-46001502 | None:intergenic | 25.0% |
| !! | ATCTAAAATGGTATCATAAC+TGG | - | chr4.4:46001309-46001328 | None:intergenic | 25.0% |
| !!! | GTAATTTTGTTTTGTAGTGA+CGG | - | chr4.4:46002157-46002176 | None:intergenic | 25.0% |
| !!! | TAGTAAGTTGAATCTTTTTG+TGG | - | chr4.4:46001727-46001746 | None:intergenic | 25.0% |
| AAATGATAGATCCAAGACTT+TGG | + | chr4.4:46001125-46001144 | MS.gene007744:CDS | 30.0% | |
| AATACGTAGGGACTAAAAAA+TGG | + | chr4.4:46002209-46002228 | MS.gene007744:intron | 30.0% | |
| AATATGCAAGAAAATTGTCC+AGG | + | chr4.4:46001760-46001779 | MS.gene007744:CDS | 30.0% | |
| AGCTATATTCCCTCTATTTA+AGG | + | chr4.4:46002067-46002086 | MS.gene007744:intron | 30.0% | |
| AGTGTACCTTAGTTATATTC+GGG | - | chr4.4:46001212-46001231 | None:intergenic | 30.0% | |
| CATGCTTATCATGTGAAAAT+AGG | + | chr4.4:46002323-46002342 | MS.gene007744:intron | 30.0% | |
| GTAGATTGATATGTTTCAAG+TGG | + | chr4.4:46001886-46001905 | MS.gene007744:intron | 30.0% | |
| GTTTGTAACATCTTTGAATG+TGG | + | chr4.4:46001857-46001876 | MS.gene007744:intron | 30.0% | |
| TATAACTAAGGTACACTTCT+TGG | + | chr4.4:46001215-46001234 | MS.gene007744:intron | 30.0% | |
| ! | AACATTTTGCCGCAATATAA+AGG | - | chr4.4:46001277-46001296 | None:intergenic | 30.0% |
| ! | AATTGATCCTTGATGAGTTT+TGG | - | chr4.4:46001699-46001718 | None:intergenic | 30.0% |
| ! | CAATTCATCAATTTGATTCG+TGG | + | chr4.4:46000805-46000824 | MS.gene007744:CDS | 30.0% |
| ! | TTTAAATTGTTGTTGCGTTG+CGG | + | chr4.4:46001239-46001258 | MS.gene007744:intron | 30.0% |
| !! | ATCACCCATAGCTTTAAATT+TGG | - | chr4.4:46002378-46002397 | None:intergenic | 30.0% |
| !! | GATCTATCATTTTTCGACTT+TGG | - | chr4.4:46001117-46001136 | None:intergenic | 30.0% |
| AAAGAACCAAGTGAAGAAGT+AGG | - | chr4.4:46000970-46000989 | None:intergenic | 35.0% | |
| AAGGTATGAATTCAAAGCCT+TGG | - | chr4.4:46002416-46002435 | None:intergenic | 35.0% | |
| AGTATGCAATAAGGGAGAAA+GGG | + | chr4.4:46001934-46001953 | MS.gene007744:CDS | 35.0% | |
| ATGGATAAGGCTTCTATCAT+TGG | + | chr4.4:46001584-46001603 | MS.gene007744:CDS | 35.0% | |
| ATTACCACAACAACTACAAG+TGG | + | chr4.4:46001081-46001100 | MS.gene007744:CDS | 35.0% | |
| CACTGCAAACCTTTATATTG+CGG | + | chr4.4:46001265-46001284 | MS.gene007744:intron | 35.0% | |
| CGTAAAGCTTATCCTTCATT+CGG | - | chr4.4:46001173-46001192 | None:intergenic | 35.0% | |
| TAGAAAACCATCAGAAACAG+TGG | - | chr4.4:46002026-46002045 | None:intergenic | 35.0% | |
| TAGTATGCAATAAGGGAGAA+AGG | + | chr4.4:46001933-46001952 | MS.gene007744:CDS | 35.0% | |
| TGAAAATAGGTGAAAGACTC+TGG | + | chr4.4:46002336-46002355 | MS.gene007744:intron | 35.0% | |
| TTTGATCCTACTTCTTCACT+TGG | + | chr4.4:46000961-46000980 | MS.gene007744:CDS | 35.0% | |
| TTTGGTCCCGAATATAACTA+AGG | + | chr4.4:46001203-46001222 | MS.gene007744:CDS | 35.0% | |
| ! | ACCTGCCAAATTTAAAGCTA+TGG | + | chr4.4:46002370-46002389 | MS.gene007744:CDS | 35.0% |
| ! | ATCAGTGCTTTTCTAAACCA+AGG | + | chr4.4:46002396-46002415 | MS.gene007744:CDS | 35.0% |
| ! | ATGTTGTGATCAAATGGGTT+TGG | - | chr4.4:46000922-46000941 | None:intergenic | 35.0% |
| ! | ATGTTTCAAGTGGATGAAAG+AGG | + | chr4.4:46001896-46001915 | MS.gene007744:CDS | 35.0% |
| ! | CCTGCCAAATTTAAAGCTAT+GGG | + | chr4.4:46002371-46002390 | MS.gene007744:CDS | 35.0% |
| ! | TGTTTCAAGTGGATGAAAGA+GGG | + | chr4.4:46001897-46001916 | MS.gene007744:CDS | 35.0% |
| ! | TTAATGTTTGCTAGTGTCAC+CGG | - | chr4.4:46000739-46000758 | None:intergenic | 35.0% |
| !! | AAATTTGGCAGGTTGATTTC+TGG | - | chr4.4:46002363-46002382 | None:intergenic | 35.0% |
| !!! | GGTTCTTTCTCTTGTTTTGA+TGG | + | chr4.4:46000982-46001001 | MS.gene007744:CDS | 35.0% |
| !!! | TGTTTTGATGGAGAAGCTAA+GGG | + | chr4.4:46000994-46001013 | MS.gene007744:CDS | 35.0% |
| !!! | TTGTTTTGATGGAGAAGCTA+AGG | + | chr4.4:46000993-46001012 | MS.gene007744:CDS | 35.0% |
| ATCACAAGCCAAGAAGCTTA+AGG | + | chr4.4:46001637-46001656 | MS.gene007744:CDS | 40.0% | |
| ATCACCACTTGTAGTTGTTG+TGG | - | chr4.4:46001088-46001107 | None:intergenic | 40.0% | |
| ATGGGTTTGGAGGAAATGAA+AGG | - | chr4.4:46000909-46000928 | None:intergenic | 40.0% | |
| GTAACATATAGCCTGCATAG+TGG | - | chr4.4:46001457-46001476 | None:intergenic | 40.0% | |
| ! | CATCAATTTGATTCGTGGTG+AGG | + | chr4.4:46000810-46000829 | MS.gene007744:CDS | 40.0% |
| ! | CTAGTTGTTGTTGTTGTTGC+AGG | - | chr4.4:46001060-46001079 | None:intergenic | 40.0% |
| ! | TTGTGATCAAATGGGTTTGG+AGG | - | chr4.4:46000919-46000938 | None:intergenic | 40.0% |
| ! | TTTTGATGGAGAAGCTAAGG+GGG | + | chr4.4:46000996-46001015 | MS.gene007744:CDS | 40.0% |
| !! | AATTTGGCCACTGTTTCTGA+TGG | + | chr4.4:46002016-46002035 | MS.gene007744:CDS | 40.0% |
| !! | CCCATAGCTTTAAATTTGGC+AGG | - | chr4.4:46002374-46002393 | None:intergenic | 40.0% |
| !! | GTTTTGATGGAGAAGCTAAG+GGG | + | chr4.4:46000995-46001014 | MS.gene007744:CDS | 40.0% |
| !! | GTTTTGTAGTGACGGAAAAG+TGG | - | chr4.4:46002149-46002168 | None:intergenic | 40.0% |
| AACCTCAGCCTTAAGCTTCT+TGG | - | chr4.4:46001648-46001667 | None:intergenic | 45.0% | |
| ATGCAATAAGGGAGAAAGGG+TGG | + | chr4.4:46001937-46001956 | MS.gene007744:CDS | 45.0% | |
| CCTCTCAGAAACCAAAGTCT+TGG | - | chr4.4:46001139-46001158 | None:intergenic | 45.0% | |
| CGCACTTATAACCACTATGC+AGG | + | chr4.4:46001443-46001462 | MS.gene007744:intron | 45.0% | |
| GCAGTGTCCAAAACTCATCA+AGG | + | chr4.4:46001689-46001708 | MS.gene007744:CDS | 45.0% | |
| GCTTTACGCATTGCGTTCTT+TGG | + | chr4.4:46001185-46001204 | MS.gene007744:CDS | 45.0% | |
| ! | AGACTTTGGTTTCTGAGAGG+AGG | + | chr4.4:46001139-46001158 | MS.gene007744:CDS | 45.0% |
| ! | CCAAGACTTTGGTTTCTGAG+AGG | + | chr4.4:46001136-46001155 | MS.gene007744:CDS | 45.0% |
| ! | TGTTGTTGTTGTTGCAGGAG+AGG | - | chr4.4:46001055-46001074 | None:intergenic | 45.0% |
| AAGCTTAAGGCTGAGGTTGC+AGG | + | chr4.4:46001650-46001669 | MS.gene007744:CDS | 50.0% | |
| AGCCAAGAAGCTTAAGGCTG+AGG | + | chr4.4:46001643-46001662 | MS.gene007744:CDS | 50.0% | |
| ! | CTTTGGTTTCTGAGAGGAGG+AGG | + | chr4.4:46001142-46001161 | MS.gene007744:CDS | 50.0% |
| GAGGAGGCGAAGCCGAATGA+AGG | + | chr4.4:46001158-46001177 | MS.gene007744:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 46000724 | 46002449 | 46000724 | ID=MS.gene007744 |
| chr4.4 | mRNA | 46000724 | 46002449 | 46000724 | ID=MS.gene007744.t1;Parent=MS.gene007744 |
| chr4.4 | exon | 46000724 | 46001224 | 46000724 | ID=MS.gene007744.t1.exon1;Parent=MS.gene007744.t1 |
| chr4.4 | CDS | 46000724 | 46001224 | 46000724 | ID=cds.MS.gene007744.t1;Parent=MS.gene007744.t1 |
| chr4.4 | exon | 46001584 | 46001781 | 46001584 | ID=MS.gene007744.t1.exon2;Parent=MS.gene007744.t1 |
| chr4.4 | CDS | 46001584 | 46001781 | 46001584 | ID=cds.MS.gene007744.t1;Parent=MS.gene007744.t1 |
| chr4.4 | exon | 46001890 | 46002063 | 46001890 | ID=MS.gene007744.t1.exon3;Parent=MS.gene007744.t1 |
| chr4.4 | CDS | 46001890 | 46002063 | 46001890 | ID=cds.MS.gene007744.t1;Parent=MS.gene007744.t1 |
| chr4.4 | exon | 46002345 | 46002449 | 46002345 | ID=MS.gene007744.t1.exon4;Parent=MS.gene007744.t1 |
| chr4.4 | CDS | 46002345 | 46002449 | 46002345 | ID=cds.MS.gene007744.t1;Parent=MS.gene007744.t1 |
| Gene Sequence |
| Protein sequence |
