Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007747.t1 | XP_003606327.1 | 81.8 | 296 | 50 | 4 | 1 | 295 | 1 | 293 | 4.70E-111 | 411 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007747.t1 | Q681X4 | 47.2 | 216 | 70 | 7 | 98 | 295 | 97 | 286 | 1.2e-38 | 161.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007747.t1 | G7JN94 | 81.8 | 296 | 50 | 4 | 1 | 295 | 1 | 293 | 3.4e-111 | 411.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene007747.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007747.t1 | MTR_4g057230 | 87.838 | 296 | 32 | 4 | 1 | 295 | 1 | 293 | 9.02e-165 | 459 |
| MS.gene007747.t1 | MTR_2g084315 | 44.514 | 319 | 97 | 13 | 17 | 295 | 15 | 293 | 5.66e-66 | 208 |
| MS.gene007747.t1 | MTR_1g090703 | 37.968 | 374 | 119 | 13 | 8 | 295 | 9 | 355 | 4.24e-60 | 195 |
| MS.gene007747.t1 | MTR_1g062780 | 36.842 | 323 | 144 | 13 | 5 | 295 | 3 | 297 | 4.02e-50 | 167 |
| MS.gene007747.t1 | MTR_1g067650 | 38.922 | 167 | 41 | 5 | 115 | 269 | 39 | 156 | 2.43e-25 | 99.8 |
| MS.gene007747.t1 | MTR_1g067640 | 38.922 | 167 | 41 | 5 | 115 | 269 | 38 | 155 | 2.53e-25 | 99.8 |
| MS.gene007747.t1 | MTR_7g023560 | 34.831 | 178 | 46 | 3 | 62 | 239 | 8 | 115 | 1.25e-23 | 95.5 |
| MS.gene007747.t1 | MTR_1g115345 | 38.971 | 136 | 39 | 3 | 105 | 240 | 35 | 126 | 1.92e-21 | 90.1 |
| MS.gene007747.t1 | MTR_7g100100 | 37.500 | 160 | 47 | 5 | 115 | 267 | 34 | 147 | 4.83e-21 | 88.2 |
| MS.gene007747.t1 | MTR_1g077730 | 39.623 | 159 | 79 | 6 | 114 | 263 | 43 | 193 | 4.05e-20 | 86.3 |
| MS.gene007747.t1 | MTR_4g028610 | 37.427 | 171 | 71 | 6 | 114 | 264 | 226 | 380 | 1.03e-18 | 86.3 |
| MS.gene007747.t1 | MTR_4g109340 | 36.709 | 158 | 80 | 5 | 115 | 267 | 348 | 490 | 2.13e-18 | 85.5 |
| MS.gene007747.t1 | MTR_1g077700 | 36.875 | 160 | 58 | 6 | 114 | 263 | 59 | 185 | 1.10e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007747.t1 | AT2G28200 | 41.720 | 314 | 110 | 10 | 17 | 295 | 11 | 286 | 1.12e-57 | 187 |
| MS.gene007747.t1 | AT5G03510 | 39.414 | 307 | 123 | 12 | 21 | 295 | 17 | 292 | 4.94e-52 | 172 |
| MS.gene007747.t1 | AT5G04390 | 32.626 | 377 | 138 | 10 | 14 | 295 | 7 | 362 | 1.63e-45 | 157 |
| MS.gene007747.t1 | AT3G10470 | 32.000 | 325 | 104 | 10 | 60 | 295 | 102 | 398 | 1.42e-38 | 140 |
| MS.gene007747.t1 | AT2G37430 | 34.247 | 219 | 69 | 6 | 58 | 268 | 9 | 160 | 1.31e-26 | 103 |
| MS.gene007747.t1 | AT3G53600 | 29.911 | 224 | 79 | 7 | 53 | 268 | 4 | 157 | 5.45e-20 | 85.5 |
| MS.gene007747.t1 | AT2G28710 | 31.492 | 181 | 59 | 5 | 100 | 269 | 22 | 148 | 1.33e-16 | 75.9 |
| MS.gene007747.t1 | AT3G60580 | 33.796 | 216 | 88 | 8 | 63 | 274 | 124 | 288 | 1.39e-16 | 78.6 |
| MS.gene007747.t1 | AT1G02040 | 28.205 | 234 | 128 | 8 | 44 | 271 | 93 | 292 | 7.39e-16 | 77.0 |
| MS.gene007747.t1 | AT5G67450 | 27.962 | 211 | 94 | 5 | 22 | 232 | 34 | 186 | 9.70e-14 | 69.7 |
Find 81 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAACAAAGTTTCAGTTTC+CGG | 0.212657 | 4.4:+46116170 | MS.gene007747:CDS |
| GGTTTGAAAGCAGCTATTAA+TGG | 0.332072 | 4.4:+46115952 | MS.gene007747:CDS |
| GATGGCTGCTGCTCCGGCTT+TGG | 0.337938 | 4.4:+46116212 | MS.gene007747:CDS |
| GGCTGCTGCTCCGGCTTTGG+TGG | 0.355185 | 4.4:+46116215 | MS.gene007747:CDS |
| CGCCGCGGCTGTCGCGGCCC+CGG | 0.362249 | 4.4:+46116077 | MS.gene007747:CDS |
| AGATGATGATGAAGAAGATT+TGG | 0.365412 | 4.4:+46115540 | MS.gene007747:CDS |
| TTTGGTGGGTTGCCATTATT+AGG | 0.369907 | 4.4:+46116230 | MS.gene007747:CDS |
| GAAACTGAAACTTTGTTTCC+CGG | 0.371224 | 4.4:-46116167 | None:intergenic |
| ATCCCACCATTGCCTAATAA+TGG | 0.373982 | 4.4:-46116242 | None:intergenic |
| ATTCATGAGTGTTCCATTTG+TGG | 0.380454 | 4.4:+46115988 | MS.gene007747:CDS |
| AAAGGGTAGTCATGGAAATA+AGG | 0.380799 | 4.4:+46115639 | MS.gene007747:CDS |
| GTTTGAAAGCAGCTATTAAT+GGG | 0.383602 | 4.4:+46115953 | MS.gene007747:CDS |
| ACAATTGGATCTTAACCTTC+CGG | 0.387432 | 4.4:+46116128 | MS.gene007747:CDS |
| GCTAGTATTCTCATGAATCT+TGG | 0.394026 | 4.4:-46115662 | None:intergenic |
| CGTGAACTCTGAACCACAAA+TGG | 0.399350 | 4.4:-46116001 | None:intergenic |
| TTCAAGCTTTGGGTGGTCAC+AGG | 0.400243 | 4.4:+46115743 | MS.gene007747:CDS |
| TGAGATGGAAGAGTTTGTTA+TGG | 0.402618 | 4.4:+46115360 | None:intergenic |
| CGGCACCGGAGGAGGATATC+CGG | 0.403948 | 4.4:+46116148 | MS.gene007747:CDS |
| CTTGGCCTAACTCCTTCATC+CGG | 0.411052 | 4.4:-46116096 | None:intergenic |
| GCTGTCGCGGCCCCGGATGA+AGG | 0.431837 | 4.4:+46116084 | MS.gene007747:CDS |
| TCCTTGTGGTGTTGTTGCTA+TGG | 0.433985 | 4.4:+46115465 | MS.gene007747:CDS |
| GTGTCCACCCAATGCTTGTC+CGG | 0.434536 | 4.4:-46116025 | None:intergenic |
| GGCAAACGCCGCGGCTGTCG+CGG | 0.437593 | 4.4:+46116071 | MS.gene007747:CDS |
| TCCAATTGTAAAATATTCCT+TGG | 0.441862 | 4.4:-46116114 | None:intergenic |
| TGATGAGAATAAAAGGGAAA+AGG | 0.444034 | 4.4:+46115621 | MS.gene007747:CDS |
| AATGGTGATGGCTGCTGCTC+CGG | 0.446387 | 4.4:+46116206 | MS.gene007747:CDS |
| CGGATATCCTCCTCCGGTGC+CGG | 0.447534 | 4.4:-46116147 | None:intergenic |
| CGGCCCCGGATGAAGGAGTT+AGG | 0.454771 | 4.4:+46116091 | MS.gene007747:CDS |
| CCACCCAAAGCTTGAAAAGA+TGG | 0.454904 | 4.4:-46115736 | None:intergenic |
| GATGAGAATAAAAGGGAAAA+GGG | 0.455980 | 4.4:+46115622 | MS.gene007747:CDS |
| ATCCGGGGCCGCGACAGCCG+CGG | 0.468884 | 4.4:-46116079 | None:intergenic |
| GTTTGTTATGGAGGAAAAGA+TGG | 0.472339 | 4.4:+46115372 | MS.gene007747:CDS |
| AATGGAACACTCATGAATCT+TGG | 0.473930 | 4.4:-46115983 | None:intergenic |
| TGTTTGATTCTTCTTGCTCA+AGG | 0.476491 | 4.4:+46115568 | MS.gene007747:CDS |
| TTTCAAATGGGGAATCATCA+TGG | 0.481342 | 4.4:+46115931 | MS.gene007747:CDS |
| TTGGCCTAACTCCTTCATCC+GGG | 0.483136 | 4.4:-46116095 | None:intergenic |
| GATGGAAGAGTTTGTTATGG+AGG | 0.484063 | 4.4:+46115363 | None:intergenic |
| GGATCTTAACCTTCCGGCAC+CGG | 0.484472 | 4.4:+46116134 | MS.gene007747:CDS |
| TTCACGTCCGGACAAGCATT+GGG | 0.492037 | 4.4:+46116018 | MS.gene007747:CDS |
| TAACCTTCCGGCACCGGAGG+AGG | 0.492624 | 4.4:+46116140 | MS.gene007747:CDS |
| GCTGCTGCTCCGGCTTTGGT+GGG | 0.498866 | 4.4:+46116216 | MS.gene007747:CDS |
| AAAAGGGAAAAGGGTAGTCA+TGG | 0.501331 | 4.4:+46115631 | MS.gene007747:CDS |
| GTGGACACATGAGGAGGCAT+AGG | 0.504351 | 4.4:+46116040 | MS.gene007747:CDS |
| TGTGGCCGAGGCTGCTGCGG+CGG | 0.507817 | 4.4:-46115817 | None:intergenic |
| GACTGTGGCCGAGGCTGCTG+CGG | 0.509325 | 4.4:-46115820 | None:intergenic |
| CATCACCGCCGCAGCAGCCT+CGG | 0.515227 | 4.4:+46115812 | MS.gene007747:CDS |
| GTTTCCCGGATATCCTCCTC+CGG | 0.518540 | 4.4:-46116153 | None:intergenic |
| TAATGGCAACCCACCAAAGC+CGG | 0.522225 | 4.4:-46116225 | None:intergenic |
| GAGAATACTAGCACAAAACT+TGG | 0.524565 | 4.4:+46115673 | MS.gene007747:CDS |
| GTTCACGTCCGGACAAGCAT+TGG | 0.531044 | 4.4:+46116017 | MS.gene007747:CDS |
| TGTGGTTCAGAGTTCACGTC+CGG | 0.531850 | 4.4:+46116006 | MS.gene007747:CDS |
| GGCACCGGAGGAGGATATCC+GGG | 0.532359 | 4.4:+46116149 | MS.gene007747:CDS |
| TCAAGCTTTGGGTGGTCACA+GGG | 0.535579 | 4.4:+46115744 | MS.gene007747:CDS |
| CCAAAGGAAAACGTACTAAG+AGG | 0.536600 | 4.4:+46115428 | MS.gene007747:CDS |
| TGAGAAACCTCGTGGGCCCA+TGG | 0.552592 | 4.4:+46115903 | MS.gene007747:CDS |
| TGGACACATGAGGAGGCATA+GGG | 0.553507 | 4.4:+46116041 | MS.gene007747:CDS |
| CCCCATTTGAAAAGAAACCA+TGG | 0.575852 | 4.4:-46115920 | None:intergenic |
| CCCATTTGAAAAGAAACCAT+GGG | 0.580230 | 4.4:-46115919 | None:intergenic |
| GAGGAGGCATAGGGCATCTG+TGG | 0.584892 | 4.4:+46116050 | MS.gene007747:CDS |
| TGATTCGCAATCAGTTAACC+TGG | 0.588441 | 4.4:+46115852 | MS.gene007747:CDS |
| ACTCATCACTATTCGCAACC+AGG | 0.588455 | 4.4:-46115870 | None:intergenic |
| TGTGATGAAGACTGTGGCCG+AGG | 0.593635 | 4.4:-46115829 | None:intergenic |
| TATCCTCCTCCGGTGCCGGA+AGG | 0.594929 | 4.4:-46116143 | None:intergenic |
| AAAGCCTAAAATCATGGCGG+AGG | 0.599306 | 4.4:+46115777 | MS.gene007747:CDS |
| TTGATTCTTCTTGCTCAAGG+TGG | 0.600477 | 4.4:+46115571 | MS.gene007747:CDS |
| AGCAGCTATTAATGGGAACA+AGG | 0.601134 | 4.4:+46115960 | MS.gene007747:CDS |
| TCTTAACCTTCCGGCACCGG+AGG | 0.607477 | 4.4:+46116137 | MS.gene007747:CDS |
| TGGCCTAACTCCTTCATCCG+GGG | 0.608914 | 4.4:-46116094 | None:intergenic |
| CGGATGAAGGAGTTAGGCCA+AGG | 0.613650 | 4.4:+46116097 | MS.gene007747:CDS |
| GATGCAACTCACATAGCCAA+AGG | 0.631447 | 4.4:+46115412 | MS.gene007747:CDS |
| ACGTCCGGACAAGCATTGGG+TGG | 0.632969 | 4.4:+46116021 | MS.gene007747:CDS |
| AAGCATTGGGTGGACACATG+AGG | 0.635825 | 4.4:+46116031 | MS.gene007747:CDS |
| GGCATCTGTGGCAAACGCCG+CGG | 0.643037 | 4.4:+46116062 | MS.gene007747:CDS |
| CATTGGGTGGACACATGAGG+AGG | 0.644735 | 4.4:+46116034 | MS.gene007747:CDS |
| GCCATAGCAACAACACCACA+AGG | 0.645146 | 4.4:-46115466 | None:intergenic |
| GAAGAAGCTGAGAAACCTCG+TGG | 0.659484 | 4.4:+46115895 | MS.gene007747:CDS |
| AAAGAAACCATGGGCCCACG+AGG | 0.675971 | 4.4:-46115910 | None:intergenic |
| GGTGGAAATCATAAGCAACA+TGG | 0.700755 | 4.4:+46115589 | MS.gene007747:CDS |
| AAGAAGCTGAGAAACCTCGT+GGG | 0.704144 | 4.4:+46115896 | MS.gene007747:CDS |
| GGAAATCATAAGCAACATGG+TGG | 0.725682 | 4.4:+46115592 | MS.gene007747:CDS |
| GAATCATGTGATGAAGACTG+TGG | 0.801031 | 4.4:-46115835 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTTGATGAGAATAAAA+GGG | + | chr4.4:46115615-46115634 | MS.gene007747:CDS | 20.0% |
| ! | TCCAATTGTAAAATATTCCT+TGG | - | chr4.4:46116117-46116136 | None:intergenic | 25.0% |
| !!! | GTTTTGTTGATGAGAATAAA+AGG | + | chr4.4:46115614-46115633 | MS.gene007747:CDS | 25.0% |
| GATGAGAATAAAAGGGAAAA+GGG | + | chr4.4:46115622-46115641 | MS.gene007747:CDS | 30.0% | |
| GTTTGAAAGCAGCTATTAAT+GGG | + | chr4.4:46115953-46115972 | MS.gene007747:CDS | 30.0% | |
| TACACAAAAATCAATGGTGA+TGG | + | chr4.4:46116194-46116213 | MS.gene007747:CDS | 30.0% | |
| TCACAAAAAGCCTAAAATCA+TGG | + | chr4.4:46115771-46115790 | MS.gene007747:CDS | 30.0% | |
| TGATGAGAATAAAAGGGAAA+AGG | + | chr4.4:46115621-46115640 | MS.gene007747:CDS | 30.0% | |
| ! | AGATGATGATGAAGAAGATT+TGG | + | chr4.4:46115540-46115559 | MS.gene007747:CDS | 30.0% |
| ! | GCCAAGGAATATTTTACAAT+TGG | + | chr4.4:46116113-46116132 | MS.gene007747:CDS | 30.0% |
| ! | TTAAGATTTTTGTCTCCTTG+TGG | + | chr4.4:46115451-46115470 | MS.gene007747:CDS | 30.0% |
| !! | TTTCCATCTTTTCAAGCTTT+GGG | + | chr4.4:46115733-46115752 | MS.gene007747:CDS | 30.0% |
| !! | TTTTCCATCTTTTCAAGCTT+TGG | + | chr4.4:46115732-46115751 | MS.gene007747:CDS | 30.0% |
| AAAGGGTAGTCATGGAAATA+AGG | + | chr4.4:46115639-46115658 | MS.gene007747:CDS | 35.0% | |
| AATGGAACACTCATGAATCT+TGG | - | chr4.4:46115986-46116005 | None:intergenic | 35.0% | |
| ACAATTGGATCTTAACCTTC+CGG | + | chr4.4:46116128-46116147 | MS.gene007747:CDS | 35.0% | |
| ATTCATGAGTGTTCCATTTG+TGG | + | chr4.4:46115988-46116007 | MS.gene007747:CDS | 35.0% | |
| CAAAAAGCCTAAAATCATGG+CGG | + | chr4.4:46115774-46115793 | MS.gene007747:CDS | 35.0% | |
| CCCATTTGAAAAGAAACCAT+GGG | - | chr4.4:46115922-46115941 | None:intergenic | 35.0% | |
| GAGAATACTAGCACAAAACT+TGG | + | chr4.4:46115673-46115692 | MS.gene007747:CDS | 35.0% | |
| GCTAGTATTCTCATGAATCT+TGG | - | chr4.4:46115665-46115684 | None:intergenic | 35.0% | |
| GGAAACAAAGTTTCAGTTTC+CGG | + | chr4.4:46116170-46116189 | MS.gene007747:CDS | 35.0% | |
| GGTTTGAAAGCAGCTATTAA+TGG | + | chr4.4:46115952-46115971 | MS.gene007747:CDS | 35.0% | |
| TGTTTGATTCTTCTTGCTCA+AGG | + | chr4.4:46115568-46115587 | MS.gene007747:CDS | 35.0% | |
| TTTCAAATGGGGAATCATCA+TGG | + | chr4.4:46115931-46115950 | MS.gene007747:CDS | 35.0% | |
| ! | CCATGGTTTCTTTTCAAATG+GGG | + | chr4.4:46115920-46115939 | MS.gene007747:CDS | 35.0% |
| ! | CCCATGGTTTCTTTTCAAAT+GGG | + | chr4.4:46115919-46115938 | MS.gene007747:CDS | 35.0% |
| ! | GAAACTGAAACTTTGTTTCC+CGG | - | chr4.4:46116170-46116189 | None:intergenic | 35.0% |
| !! | GTTTGTTATGGAGGAAAAGA+TGG | + | chr4.4:46115372-46115391 | MS.gene007747:CDS | 35.0% |
| !!! | ACCATTGATTTTTGTGTAGC+CGG | - | chr4.4:46116192-46116211 | None:intergenic | 35.0% |
| AAAAGGGAAAAGGGTAGTCA+TGG | + | chr4.4:46115631-46115650 | MS.gene007747:CDS | 40.0% | |
| AGCAGCTATTAATGGGAACA+AGG | + | chr4.4:46115960-46115979 | MS.gene007747:CDS | 40.0% | |
| CCAAAGGAAAACGTACTAAG+AGG | + | chr4.4:46115428-46115447 | MS.gene007747:CDS | 40.0% | |
| CCCCATTTGAAAAGAAACCA+TGG | - | chr4.4:46115923-46115942 | None:intergenic | 40.0% | |
| GAATCATGTGATGAAGACTG+TGG | - | chr4.4:46115838-46115857 | None:intergenic | 40.0% | |
| GGAAATCATAAGCAACATGG+TGG | + | chr4.4:46115592-46115611 | MS.gene007747:CDS | 40.0% | |
| GGTGGAAATCATAAGCAACA+TGG | + | chr4.4:46115589-46115608 | MS.gene007747:CDS | 40.0% | |
| TCCGGCTACACAAAAATCAA+TGG | + | chr4.4:46116188-46116207 | MS.gene007747:CDS | 40.0% | |
| TGATTCGCAATCAGTTAACC+TGG | + | chr4.4:46115852-46115871 | MS.gene007747:CDS | 40.0% | |
| TTGATTCTTCTTGCTCAAGG+TGG | + | chr4.4:46115571-46115590 | MS.gene007747:CDS | 40.0% | |
| ! | CCTCTTAGTACGTTTTCCTT+TGG | - | chr4.4:46115431-46115450 | None:intergenic | 40.0% |
| ! | GCCCATGGTTTCTTTTCAAA+TGG | + | chr4.4:46115918-46115937 | MS.gene007747:CDS | 40.0% |
| AAAGCCTAAAATCATGGCGG+AGG | + | chr4.4:46115777-46115796 | MS.gene007747:CDS | 45.0% | |
| AAGAAGCTGAGAAACCTCGT+GGG | + | chr4.4:46115896-46115915 | MS.gene007747:CDS | 45.0% | |
| ACTCATCACTATTCGCAACC+AGG | - | chr4.4:46115873-46115892 | None:intergenic | 45.0% | |
| CCACCCAAAGCTTGAAAAGA+TGG | - | chr4.4:46115739-46115758 | None:intergenic | 45.0% | |
| CGTGAACTCTGAACCACAAA+TGG | - | chr4.4:46116004-46116023 | None:intergenic | 45.0% | |
| GATGCAACTCACATAGCCAA+AGG | + | chr4.4:46115412-46115431 | MS.gene007747:CDS | 45.0% | |
| ! | TTCTCCTCCGCCATGATTTT+AGG | - | chr4.4:46115784-46115803 | None:intergenic | 45.0% |
| !! | TCCTTGTGGTGTTGTTGCTA+TGG | + | chr4.4:46115465-46115484 | MS.gene007747:CDS | 45.0% |
| !!! | CCATCTTTTCAAGCTTTGGG+TGG | + | chr4.4:46115736-46115755 | MS.gene007747:CDS | 45.0% |
| CTTGGCCTAACTCCTTCATC+CGG | - | chr4.4:46116099-46116118 | None:intergenic | 50.0% | |
| GAAGAAGCTGAGAAACCTCG+TGG | + | chr4.4:46115895-46115914 | MS.gene007747:CDS | 50.0% | |
| GCCATAGCAACAACACCACA+AGG | - | chr4.4:46115469-46115488 | None:intergenic | 50.0% | |
| TAATGGCAACCCACCAAAGC+CGG | - | chr4.4:46116228-46116247 | None:intergenic | 50.0% | |
| TGTGGTTCAGAGTTCACGTC+CGG | + | chr4.4:46116006-46116025 | MS.gene007747:CDS | 50.0% | |
| TTCACGTCCGGACAAGCATT+GGG | + | chr4.4:46116018-46116037 | MS.gene007747:CDS | 50.0% | |
| TTGGCCTAACTCCTTCATCC+GGG | - | chr4.4:46116098-46116117 | None:intergenic | 50.0% | |
| ! | TGGACACATGAGGAGGCATA+GGG | + | chr4.4:46116041-46116060 | MS.gene007747:CDS | 50.0% |
| !! | AAGCATTGGGTGGACACATG+AGG | + | chr4.4:46116031-46116050 | MS.gene007747:CDS | 50.0% |
| !! | TCAAGCTTTGGGTGGTCACA+GGG | + | chr4.4:46115744-46115763 | MS.gene007747:CDS | 50.0% |
| !! | TTCAAGCTTTGGGTGGTCAC+AGG | + | chr4.4:46115743-46115762 | MS.gene007747:CDS | 50.0% |
| AAAGAAACCATGGGCCCACG+AGG | - | chr4.4:46115913-46115932 | None:intergenic | 55.0% | |
| CATTGGGTGGACACATGAGG+AGG | + | chr4.4:46116034-46116053 | MS.gene007747:CDS | 55.0% | |
| CGGATGAAGGAGTTAGGCCA+AGG | + | chr4.4:46116097-46116116 | MS.gene007747:CDS | 55.0% | |
| GGATCTTAACCTTCCGGCAC+CGG | + | chr4.4:46116134-46116153 | MS.gene007747:CDS | 55.0% | |
| GTGTCCACCCAATGCTTGTC+CGG | - | chr4.4:46116028-46116047 | None:intergenic | 55.0% | |
| GTTCACGTCCGGACAAGCAT+TGG | + | chr4.4:46116017-46116036 | MS.gene007747:CDS | 55.0% | |
| GTTTCCCGGATATCCTCCTC+CGG | - | chr4.4:46116156-46116175 | None:intergenic | 55.0% | |
| TGGCCTAACTCCTTCATCCG+GGG | - | chr4.4:46116097-46116116 | None:intergenic | 55.0% | |
| TGTGATGAAGACTGTGGCCG+AGG | - | chr4.4:46115832-46115851 | None:intergenic | 55.0% | |
| ! | GTGGACACATGAGGAGGCAT+AGG | + | chr4.4:46116040-46116059 | MS.gene007747:CDS | 55.0% |
| !! | AATGGTGATGGCTGCTGCTC+CGG | + | chr4.4:46116206-46116225 | MS.gene007747:CDS | 55.0% |
| TGAGAAACCTCGTGGGCCCA+TGG | + | chr4.4:46115903-46115922 | MS.gene007747:CDS | 60.0% | |
| ! | GAGGAGGCATAGGGCATCTG+TGG | + | chr4.4:46116050-46116069 | MS.gene007747:CDS | 60.0% |
| ! | TCTTAACCTTCCGGCACCGG+AGG | + | chr4.4:46116137-46116156 | MS.gene007747:CDS | 60.0% |
| !! | ACGTCCGGACAAGCATTGGG+TGG | + | chr4.4:46116021-46116040 | MS.gene007747:CDS | 60.0% |
| CGGATATCCTCCTCCGGTGC+CGG | - | chr4.4:46116150-46116169 | None:intergenic | 65.0% | |
| CGGCCCCGGATGAAGGAGTT+AGG | + | chr4.4:46116091-46116110 | MS.gene007747:CDS | 65.0% | |
| GATGGCTGCTGCTCCGGCTT+TGG | + | chr4.4:46116212-46116231 | MS.gene007747:CDS | 65.0% | |
| GGCATCTGTGGCAAACGCCG+CGG | + | chr4.4:46116062-46116081 | MS.gene007747:CDS | 65.0% | |
| ! | CGGCACCGGAGGAGGATATC+CGG | + | chr4.4:46116148-46116167 | MS.gene007747:CDS | 65.0% |
| ! | GCTGCTGCTCCGGCTTTGGT+GGG | + | chr4.4:46116216-46116235 | MS.gene007747:CDS | 65.0% |
| ! | GGCACCGGAGGAGGATATCC+GGG | + | chr4.4:46116149-46116168 | MS.gene007747:CDS | 65.0% |
| ! | TAACCTTCCGGCACCGGAGG+AGG | + | chr4.4:46116140-46116159 | MS.gene007747:CDS | 65.0% |
| ! | TATCCTCCTCCGGTGCCGGA+AGG | - | chr4.4:46116146-46116165 | None:intergenic | 65.0% |
| CATCACCGCCGCAGCAGCCT+CGG | + | chr4.4:46115812-46115831 | MS.gene007747:CDS | 70.0% | |
| GACTGTGGCCGAGGCTGCTG+CGG | - | chr4.4:46115823-46115842 | None:intergenic | 70.0% | |
| ! | GGCTGCTGCTCCGGCTTTGG+TGG | + | chr4.4:46116215-46116234 | MS.gene007747:CDS | 70.0% |
| GCTGTCGCGGCCCCGGATGA+AGG | + | chr4.4:46116084-46116103 | MS.gene007747:CDS | 75.0% | |
| GGCAAACGCCGCGGCTGTCG+CGG | + | chr4.4:46116071-46116090 | MS.gene007747:CDS | 75.0% | |
| TGTGGCCGAGGCTGCTGCGG+CGG | - | chr4.4:46115820-46115839 | None:intergenic | 75.0% | |
| ! | ATCCGGGGCCGCGACAGCCG+CGG | - | chr4.4:46116082-46116101 | None:intergenic | 80.0% |
| ! | CGCCGCGGCTGTCGCGGCCC+CGG | + | chr4.4:46116077-46116096 | MS.gene007747:CDS | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 46115364 | 46116251 | 46115364 | ID=MS.gene007747 |
| chr4.4 | mRNA | 46115364 | 46116251 | 46115364 | ID=MS.gene007747.t1;Parent=MS.gene007747 |
| chr4.4 | exon | 46115364 | 46116251 | 46115364 | ID=MS.gene007747.t1.exon1;Parent=MS.gene007747.t1 |
| chr4.4 | CDS | 46115364 | 46116251 | 46115364 | ID=cds.MS.gene007747.t1;Parent=MS.gene007747.t1 |
| Gene Sequence |
| Protein sequence |
