Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007827.t1 | XP_013445167.1 | 95 | 322 | 15 | 1 | 1 | 321 | 1 | 322 | 2.90E-154 | 554.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007827.t1 | P55197 | 36.2 | 188 | 104 | 4 | 129 | 307 | 25 | 205 | 3.7e-33 | 143.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007827.t1 | G7ZV42 | 95.0 | 322 | 15 | 1 | 1 | 321 | 1 | 322 | 2.1e-154 | 554.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene007827.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007827.t1 | MTR_8g042510 | 95.031 | 322 | 15 | 1 | 1 | 321 | 1 | 322 | 0.0 | 586 |
| MS.gene007827.t1 | MTR_7g021365 | 33.514 | 185 | 103 | 4 | 129 | 301 | 605 | 781 | 3.77e-22 | 97.4 |
| MS.gene007827.t1 | MTR_7g021365 | 33.690 | 187 | 100 | 5 | 129 | 301 | 605 | 781 | 5.55e-22 | 97.1 |
| MS.gene007827.t1 | MTR_7g117355 | 27.155 | 232 | 143 | 8 | 81 | 299 | 483 | 701 | 1.69e-15 | 77.8 |
| MS.gene007827.t1 | MTR_8g027725 | 28.409 | 176 | 111 | 6 | 129 | 299 | 521 | 686 | 4.34e-15 | 76.6 |
| MS.gene007827.t1 | MTR_8g027725 | 28.409 | 176 | 111 | 6 | 129 | 299 | 506 | 671 | 4.52e-15 | 76.3 |
| MS.gene007827.t1 | MTR_3g091310 | 29.545 | 176 | 109 | 6 | 129 | 299 | 632 | 797 | 2.87e-14 | 73.9 |
| MS.gene007827.t1 | MTR_3g091310 | 29.545 | 176 | 109 | 6 | 129 | 299 | 538 | 703 | 3.31e-14 | 73.9 |
| MS.gene007827.t1 | MTR_1g008230 | 30.508 | 177 | 106 | 7 | 129 | 299 | 602 | 767 | 1.24e-13 | 72.0 |
| MS.gene007827.t1 | MTR_1g008230 | 30.508 | 177 | 106 | 7 | 129 | 299 | 324 | 489 | 1.51e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007827.t1 | AT3G14740 | 48.000 | 325 | 134 | 6 | 21 | 319 | 25 | 340 | 1.91e-97 | 291 |
| MS.gene007827.t1 | AT3G14740 | 48.000 | 325 | 132 | 7 | 21 | 319 | 25 | 338 | 1.36e-95 | 286 |
| MS.gene007827.t1 | AT2G31650 | 35.912 | 181 | 102 | 5 | 129 | 301 | 612 | 786 | 2.07e-26 | 110 |
| MS.gene007827.t1 | AT1G05830 | 33.508 | 191 | 98 | 6 | 129 | 301 | 629 | 808 | 1.15e-24 | 105 |
| MS.gene007827.t1 | AT1G05830 | 33.508 | 191 | 98 | 6 | 129 | 301 | 629 | 808 | 1.15e-24 | 105 |
| MS.gene007827.t1 | AT1G05830 | 33.508 | 191 | 98 | 6 | 129 | 301 | 629 | 808 | 1.15e-24 | 105 |
| MS.gene007827.t1 | AT1G05830 | 33.508 | 191 | 98 | 6 | 129 | 301 | 629 | 808 | 1.15e-24 | 105 |
| MS.gene007827.t1 | AT3G61740 | 32.258 | 155 | 93 | 6 | 129 | 281 | 549 | 693 | 2.85e-15 | 77.0 |
| MS.gene007827.t1 | AT3G61740 | 32.258 | 155 | 93 | 6 | 129 | 281 | 549 | 693 | 3.06e-15 | 77.0 |
| MS.gene007827.t1 | AT5G53430 | 27.556 | 225 | 136 | 10 | 90 | 299 | 563 | 775 | 4.73e-14 | 73.6 |
| MS.gene007827.t1 | AT4G27910 | 30.337 | 178 | 105 | 10 | 129 | 299 | 595 | 760 | 9.14e-13 | 69.7 |
Find 77 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCGATGGTTGTAACTTAA+TGG | 0.232253 | 8.1:+53709509 | MS.gene007827:CDS |
| GGATCTTTGTATTGAGTATA+AGG | 0.260989 | 8.1:+53709902 | MS.gene007827:CDS |
| GTTCTTCCTGCTGTTGTTGC+TGG | 0.280025 | 8.1:-53709134 | None:intergenic |
| GGGGTGTTGGTGATGAAGGT+GGG | 0.297798 | 8.1:-53709230 | None:intergenic |
| CGTCGGTTGGGATGTTGTTT+TGG | 0.298059 | 8.1:-53709317 | None:intergenic |
| TCGATCCCTTCTCTCCCTTC+TGG | 0.315789 | 8.1:-53709750 | None:intergenic |
| AAAGGTGCTACTGTTGTTGC+TGG | 0.352947 | 8.1:+53709933 | MS.gene007827:CDS |
| GGTGGTGAAGGTGGGGTTGA+AGG | 0.356961 | 8.1:-53709296 | None:intergenic |
| CAACCATCGCAGAAAACTAT+TGG | 0.358090 | 8.1:-53709498 | None:intergenic |
| TTCTGAACAGAAGTGTGGTT+TGG | 0.363928 | 8.1:+53709851 | MS.gene007827:CDS |
| AATGAATCTTAGTCGTTTGT+TGG | 0.373084 | 8.1:-53709109 | None:intergenic |
| TCTGAACAGAAGTGTGGTTT+GGG | 0.382510 | 8.1:+53709852 | MS.gene007827:CDS |
| ATGGTTCATGCTTCTTGCTA+TGG | 0.411044 | 8.1:+53709528 | MS.gene007827:CDS |
| AACAGATCCCAGAGGGTGAT+TGG | 0.418940 | 8.1:+53709565 | MS.gene007827:CDS |
| GTAAAACCCACTCTCAGATC+TGG | 0.421289 | 8.1:+53709961 | MS.gene007827:CDS |
| ATGAATCTTAGTCGTTTGTT+GGG | 0.437202 | 8.1:-53709108 | None:intergenic |
| GTGAAGGTGGGGTTGAAGGG+CGG | 0.439165 | 8.1:-53709292 | None:intergenic |
| AAGGATTGTATTCGACGTTA+AGG | 0.446169 | 8.1:-53709356 | None:intergenic |
| TTTCGATTGGGGTGGGTGAG+GGG | 0.446288 | 8.1:-53709383 | None:intergenic |
| AACAAACAACAGATGGAAAG+TGG | 0.447815 | 8.1:+53709679 | MS.gene007827:CDS |
| GTGGTGAAGGTGGGGTTGAA+GGG | 0.451273 | 8.1:-53709295 | None:intergenic |
| TATGTATGTGGGTGTTGTGA+TGG | 0.455586 | 8.1:+53709813 | MS.gene007827:CDS |
| TTGGTGCAGAACAAGGGATC+CGG | 0.466812 | 8.1:+53710572 | MS.gene007827:intron |
| TCACAAAACCAATCACCCTC+TGG | 0.470280 | 8.1:-53709573 | None:intergenic |
| GGGTGTTGGTGATGAAGGTG+GGG | 0.471563 | 8.1:-53709229 | None:intergenic |
| GTGGGTAGAGAATAAGTAGA+TGG | 0.471895 | 8.1:-53709255 | None:intergenic |
| GTGTTGTGATGGATGTGCTT+TGG | 0.478647 | 8.1:+53709824 | MS.gene007827:CDS |
| AACCATCGCAGAAAACTATT+GGG | 0.482164 | 8.1:-53709497 | None:intergenic |
| CTGGGATCTGTTTCACCAGA+GGG | 0.482798 | 8.1:-53709554 | None:intergenic |
| CTTTGTATTGAGTATAAGGA+AGG | 0.487792 | 8.1:+53709906 | MS.gene007827:CDS |
| CTGCATTAGCGTCTGTGCTA+TGG | 0.490299 | 8.1:-53709470 | None:intergenic |
| GGGGTGGGTGAGGGGAGAGA+AGG | 0.500025 | 8.1:-53709375 | None:intergenic |
| GAGTATAAGGAAGGGAAGAA+AGG | 0.503186 | 8.1:+53709915 | MS.gene007827:CDS |
| TTCTTGCTATGGCAACCCTC+TGG | 0.503649 | 8.1:+53709539 | MS.gene007827:CDS |
| CATTTACCAGCAACAACAGC+AGG | 0.507729 | 8.1:+53709128 | MS.gene007827:CDS |
| TGAGTGGAACAGCGTCGGTT+GGG | 0.509178 | 8.1:-53709329 | None:intergenic |
| CTCCCTCTGTCCTACGAAAG+AGG | 0.511997 | 8.1:+53709647 | MS.gene007827:CDS |
| CAAGTAAAGCACAAACAAGA+TGG | 0.512592 | 8.1:-53709704 | None:intergenic |
| CCACTCTCAGATCTGGGAAA+AGG | 0.515813 | 8.1:+53709968 | MS.gene007827:CDS |
| TTGGAGAAGTGTTATGTATG+TGG | 0.523141 | 8.1:+53709801 | MS.gene007827:CDS |
| TGGTGCAGAACAAGGGATCC+GGG | 0.530245 | 8.1:+53710573 | MS.gene007827:intron |
| TCGTTTGTTGGGAGGTAGGT+CGG | 0.538544 | 8.1:-53709097 | None:intergenic |
| ATGAGTGGAACAGCGTCGGT+TGG | 0.539722 | 8.1:-53709330 | None:intergenic |
| TAAAACCCACTCTCAGATCT+GGG | 0.541497 | 8.1:+53709962 | MS.gene007827:CDS |
| TGGATCCAGAAGGGAGAGAA+GGG | 0.542390 | 8.1:+53709745 | MS.gene007827:CDS |
| GAGGGAGCAACGAATTGAAT+CGG | 0.543446 | 8.1:-53709631 | None:intergenic |
| TTAGTCGTTTGTTGGGAGGT+AGG | 0.543612 | 8.1:-53709101 | None:intergenic |
| TGGAGAAGTGTTATGTATGT+GGG | 0.545181 | 8.1:+53709802 | MS.gene007827:CDS |
| GCAATGAAACAAACAACAGA+TGG | 0.550342 | 8.1:+53709672 | MS.gene007827:CDS |
| TCCCTCTTTCGTAGGACAGA+GGG | 0.550747 | 8.1:-53709649 | None:intergenic |
| TTCATTGCTCCCTCTTTCGT+AGG | 0.551522 | 8.1:-53709657 | None:intergenic |
| GTGGATCCAGAAGGGAGAGA+AGG | 0.554299 | 8.1:+53709744 | MS.gene007827:CDS |
| CACAAAACCAATCACCCTCT+GGG | 0.561651 | 8.1:-53709572 | None:intergenic |
| TCCCTCTGTCCTACGAAAGA+GGG | 0.571477 | 8.1:+53709648 | MS.gene007827:CDS |
| GTTCTAAGATTCCACAGAAG+AGG | 0.573200 | 8.1:+53709775 | MS.gene007827:CDS |
| TTCTCCAACCACCTCTTCTG+TGG | 0.573745 | 8.1:-53709786 | None:intergenic |
| GATTCCACAGAAGAGGTGGT+TGG | 0.573938 | 8.1:+53709782 | MS.gene007827:CDS |
| AATCTTAGTCGTTTGTTGGG+AGG | 0.581292 | 8.1:-53709105 | None:intergenic |
| GTAGAGAATAAGTAGATGGT+GGG | 0.581521 | 8.1:-53709251 | None:intergenic |
| CTAAGATTCCACAGAAGAGG+TGG | 0.584859 | 8.1:+53709778 | MS.gene007827:CDS |
| GGTAGAGAATAAGTAGATGG+TGG | 0.587962 | 8.1:-53709252 | None:intergenic |
| GTTTGTTCTGAACAGAAGTG+TGG | 0.601379 | 8.1:+53709846 | MS.gene007827:CDS |
| AAGTAAAGCACAAACAAGAT+GGG | 0.608555 | 8.1:-53709703 | None:intergenic |
| GTCGATGAGTGGAACAGCGT+CGG | 0.610138 | 8.1:-53709334 | None:intergenic |
| CTCCCTCTTTCGTAGGACAG+AGG | 0.612913 | 8.1:-53709650 | None:intergenic |
| TCTGGGATCTGTTTCACCAG+AGG | 0.613157 | 8.1:-53709555 | None:intergenic |
| CGGGAAATACAAAATTGTTG+CGG | 0.616282 | 8.1:+53710592 | MS.gene007827:CDS |
| TCGACGTTAAGGTCGATGAG+TGG | 0.616739 | 8.1:-53709345 | None:intergenic |
| TATTACTTGTGGAATCAAAG+AGG | 0.618592 | 8.1:+53709881 | MS.gene007827:CDS |
| ACAAACAACAGATGGAAAGT+GGG | 0.626115 | 8.1:+53709680 | MS.gene007827:CDS |
| GAATTTGAAGTCGATGACGA+TGG | 0.627081 | 8.1:+53709429 | MS.gene007827:CDS |
| AGAGAATAAGTAGATGGTGG+GGG | 0.628297 | 8.1:-53709249 | None:intergenic |
| TTTGTATTGAGTATAAGGAA+GGG | 0.629492 | 8.1:+53709907 | MS.gene007827:CDS |
| TAGAGAATAAGTAGATGGTG+GGG | 0.637260 | 8.1:-53709250 | None:intergenic |
| CTGGTGAAACAGATCCCAGA+GGG | 0.654987 | 8.1:+53709558 | MS.gene007827:CDS |
| TAGCACAGACGCTAATGCAG+AGG | 0.661951 | 8.1:+53709473 | MS.gene007827:CDS |
| TCTGGTGAAACAGATCCCAG+AGG | 0.763846 | 8.1:+53709557 | MS.gene007827:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTAAGAATATTTATTTTT+TGG | + | chr8.1:53710094-53710113 | MS.gene007827:intron | 10.0% |
| !!! | CAAGTTTAATTTGATTTTAT+TGG | + | chr8.1:53710553-53710572 | MS.gene007827:intron | 15.0% |
| !!! | CTAAATTTTATCTGGTTTTA+AGG | + | chr8.1:53710403-53710422 | MS.gene007827:intron | 20.0% |
| !!! | TTTTAGATTGTTTTTCGATT+GGG | - | chr8.1:53709398-53709417 | None:intergenic | 20.0% |
| !!! | TTTTTAGATTGTTTTTCGAT+TGG | - | chr8.1:53709399-53709418 | None:intergenic | 20.0% |
| ! | CGAAAAACAATCTAAAAAAC+AGG | + | chr8.1:53709401-53709420 | MS.gene007827:CDS | 25.0% |
| ! | TGTTGTTAGTGAATTATTGA+AGG | + | chr8.1:53710493-53710512 | MS.gene007827:intron | 25.0% |
| ! | TTTGTATTGAGTATAAGGAA+GGG | + | chr8.1:53709907-53709926 | MS.gene007827:CDS | 25.0% |
| !! | GTCAATGACTAAATTTTATC+TGG | + | chr8.1:53710395-53710414 | MS.gene007827:intron | 25.0% |
| !!! | TTATTGAAGGCTAACTTTTT+TGG | + | chr8.1:53710506-53710525 | MS.gene007827:intron | 25.0% |
| !!! | TTTAGATTGTTTTTCGATTG+GGG | - | chr8.1:53709397-53709416 | None:intergenic | 25.0% |
| AAGTAAAGCACAAACAAGAT+GGG | - | chr8.1:53709706-53709725 | None:intergenic | 30.0% | |
| AATGAATCTTAGTCGTTTGT+TGG | - | chr8.1:53709112-53709131 | None:intergenic | 30.0% | |
| ATGAATCTTAGTCGTTTGTT+GGG | - | chr8.1:53709111-53709130 | None:intergenic | 30.0% | |
| CTTTGTATTGAGTATAAGGA+AGG | + | chr8.1:53709906-53709925 | MS.gene007827:CDS | 30.0% | |
| GGATCTTTGTATTGAGTATA+AGG | + | chr8.1:53709902-53709921 | MS.gene007827:CDS | 30.0% | |
| TATTACTTGTGGAATCAAAG+AGG | + | chr8.1:53709881-53709900 | MS.gene007827:CDS | 30.0% | |
| ! | ATTTTATTGGTGCAGAACAA+GGG | + | chr8.1:53710566-53710585 | MS.gene007827:intron | 30.0% |
| ! | TTGGGTTTTCATATTACTTG+TGG | + | chr8.1:53709870-53709889 | MS.gene007827:CDS | 30.0% |
| AACAAACAACAGATGGAAAG+TGG | + | chr8.1:53709679-53709698 | MS.gene007827:CDS | 35.0% | |
| AACCATCGCAGAAAACTATT+GGG | - | chr8.1:53709500-53709519 | None:intergenic | 35.0% | |
| AAGGATTGTATTCGACGTTA+AGG | - | chr8.1:53709359-53709378 | None:intergenic | 35.0% | |
| ACAAACAACAGATGGAAAGT+GGG | + | chr8.1:53709680-53709699 | MS.gene007827:CDS | 35.0% | |
| CAAGTAAAGCACAAACAAGA+TGG | - | chr8.1:53709707-53709726 | None:intergenic | 35.0% | |
| CGGGAAATACAAAATTGTTG+CGG | + | chr8.1:53710592-53710611 | MS.gene007827:CDS | 35.0% | |
| GCAATGAAACAAACAACAGA+TGG | + | chr8.1:53709672-53709691 | MS.gene007827:CDS | 35.0% | |
| GTAGAGAATAAGTAGATGGT+GGG | - | chr8.1:53709254-53709273 | None:intergenic | 35.0% | |
| TAGAGAATAAGTAGATGGTG+GGG | - | chr8.1:53709253-53709272 | None:intergenic | 35.0% | |
| ! | CGCAACAATTTTGTATTTCC+CGG | - | chr8.1:53710594-53710613 | None:intergenic | 35.0% |
| ! | GATTTTATTGGTGCAGAACA+AGG | + | chr8.1:53710565-53710584 | MS.gene007827:intron | 35.0% |
| !! | TGGAGAAGTGTTATGTATGT+GGG | + | chr8.1:53709802-53709821 | MS.gene007827:CDS | 35.0% |
| !! | TTGGAGAAGTGTTATGTATG+TGG | + | chr8.1:53709801-53709820 | MS.gene007827:CDS | 35.0% |
| !!! | AAGGGCGGTTATTCTTTTTT+TGG | - | chr8.1:53709280-53709299 | None:intergenic | 35.0% |
| !!! | ACGAGATTCTTTGCGTTTTT+TGG | - | chr8.1:53709190-53709209 | None:intergenic | 35.0% |
| !!! | AGATTCTTTGCGTTTTTTGG+TGG | - | chr8.1:53709187-53709206 | None:intergenic | 35.0% |
| !!! | GATTCTTTGCGTTTTTTGGT+GGG | - | chr8.1:53709186-53709205 | None:intergenic | 35.0% |
| !!! | GCGGTTATTCTTTTTTTGGT+GGG | - | chr8.1:53709276-53709295 | None:intergenic | 35.0% |
| !!! | TGTTTTTTGTGGATCCAGAA+GGG | + | chr8.1:53709736-53709755 | MS.gene007827:CDS | 35.0% |
| ATGGTTCATGCTTCTTGCTA+TGG | + | chr8.1:53709528-53709547 | MS.gene007827:CDS | 40.0% | |
| CAACCATCGCAGAAAACTAT+TGG | - | chr8.1:53709501-53709520 | None:intergenic | 40.0% | |
| CTGCGATGGTTGTAACTTAA+TGG | + | chr8.1:53709509-53709528 | MS.gene007827:CDS | 40.0% | |
| GAGTATAAGGAAGGGAAGAA+AGG | + | chr8.1:53709915-53709934 | MS.gene007827:CDS | 40.0% | |
| GGATCCACAAAAAACACTTC+AGG | - | chr8.1:53709732-53709751 | None:intergenic | 40.0% | |
| GGTAGAGAATAAGTAGATGG+TGG | - | chr8.1:53709255-53709274 | None:intergenic | 40.0% | |
| GTGGGTAGAGAATAAGTAGA+TGG | - | chr8.1:53709258-53709277 | None:intergenic | 40.0% | |
| TAAAACCCACTCTCAGATCT+GGG | + | chr8.1:53709962-53709981 | MS.gene007827:CDS | 40.0% | |
| ! | AATCTTAGTCGTTTGTTGGG+AGG | - | chr8.1:53709108-53709127 | None:intergenic | 40.0% |
| ! | AGAGAATAAGTAGATGGTGG+GGG | - | chr8.1:53709252-53709271 | None:intergenic | 40.0% |
| ! | GAATTTGAAGTCGATGACGA+TGG | + | chr8.1:53709429-53709448 | MS.gene007827:CDS | 40.0% |
| ! | GTTTGTTCTGAACAGAAGTG+TGG | + | chr8.1:53709846-53709865 | MS.gene007827:CDS | 40.0% |
| ! | TATGTATGTGGGTGTTGTGA+TGG | + | chr8.1:53709813-53709832 | MS.gene007827:CDS | 40.0% |
| ! | TCTGAACAGAAGTGTGGTTT+GGG | + | chr8.1:53709852-53709871 | MS.gene007827:CDS | 40.0% |
| ! | TTCTGAACAGAAGTGTGGTT+TGG | + | chr8.1:53709851-53709870 | MS.gene007827:CDS | 40.0% |
| !! | AGATTGTTTTTCGATTGGGG+TGG | - | chr8.1:53709394-53709413 | None:intergenic | 40.0% |
| !! | GATTGTTTTTCGATTGGGGT+GGG | - | chr8.1:53709393-53709412 | None:intergenic | 40.0% |
| !! | GTTCTAAGATTCCACAGAAG+AGG | + | chr8.1:53709775-53709794 | MS.gene007827:CDS | 40.0% |
| !!! | GAAGGCTAACTTTTTTGGCT+TGG | + | chr8.1:53710511-53710530 | MS.gene007827:intron | 40.0% |
| !!! | GGCGGTTATTCTTTTTTTGG+TGG | - | chr8.1:53709277-53709296 | None:intergenic | 40.0% |
| !!! | GTGTTTTTTGTGGATCCAGA+AGG | + | chr8.1:53709735-53709754 | MS.gene007827:CDS | 40.0% |
| !!! | TGTGCCTGAAGTGTTTTTTG+TGG | + | chr8.1:53709725-53709744 | MS.gene007827:CDS | 40.0% |
| CACAAAACCAATCACCCTCT+GGG | - | chr8.1:53709575-53709594 | None:intergenic | 45.0% | |
| CATTTACCAGCAACAACAGC+AGG | + | chr8.1:53709128-53709147 | MS.gene007827:CDS | 45.0% | |
| CTAAGATTCCACAGAAGAGG+TGG | + | chr8.1:53709778-53709797 | MS.gene007827:CDS | 45.0% | |
| GAGGGAGCAACGAATTGAAT+CGG | - | chr8.1:53709634-53709653 | None:intergenic | 45.0% | |
| GTAAAACCCACTCTCAGATC+TGG | + | chr8.1:53709961-53709980 | MS.gene007827:CDS | 45.0% | |
| TCACAAAACCAATCACCCTC+TGG | - | chr8.1:53709576-53709595 | None:intergenic | 45.0% | |
| TTCATTGCTCCCTCTTTCGT+AGG | - | chr8.1:53709660-53709679 | None:intergenic | 45.0% | |
| ! | AGGTAGGTCGGTGATGTTTT+TGG | - | chr8.1:53709088-53709107 | None:intergenic | 45.0% |
| ! | CTTTTCCCAGATCTGAGAGT+GGG | - | chr8.1:53709970-53709989 | None:intergenic | 45.0% |
| ! | GACCCAATAGTTTTCTGCGA+TGG | + | chr8.1:53709495-53709514 | MS.gene007827:CDS | 45.0% |
| ! | TTAGTCGTTTGTTGGGAGGT+AGG | - | chr8.1:53709104-53709123 | None:intergenic | 45.0% |
| !! | AAAGGTGCTACTGTTGTTGC+TGG | + | chr8.1:53709933-53709952 | MS.gene007827:CDS | 45.0% |
| !! | GTGTTGTGATGGATGTGCTT+TGG | + | chr8.1:53709824-53709843 | MS.gene007827:CDS | 45.0% |
| !!! | GGATGTTGTTTTGGTGGTGA+AGG | - | chr8.1:53709311-53709330 | None:intergenic | 45.0% |
| !!! | GTTGTTTTGGTGGTGAAGGT+GGG | - | chr8.1:53709307-53709326 | None:intergenic | 45.0% |
| !!! | TGTTGTTTTGGTGGTGAAGG+TGG | - | chr8.1:53709308-53709327 | None:intergenic | 45.0% |
| !!! | TTGTTTTGGTGGTGAAGGTG+GGG | - | chr8.1:53709306-53709325 | None:intergenic | 45.0% |
| AACAGATCCCAGAGGGTGAT+TGG | + | chr8.1:53709565-53709584 | MS.gene007827:CDS | 50.0% | |
| CCACTCTCAGATCTGGGAAA+AGG | + | chr8.1:53709968-53709987 | MS.gene007827:CDS | 50.0% | |
| CTGCATTAGCGTCTGTGCTA+TGG | - | chr8.1:53709473-53709492 | None:intergenic | 50.0% | |
| CTGGGATCTGTTTCACCAGA+GGG | - | chr8.1:53709557-53709576 | None:intergenic | 50.0% | |
| CTGGTGAAACAGATCCCAGA+GGG | + | chr8.1:53709558-53709577 | MS.gene007827:CDS | 50.0% | |
| GATTCCACAGAAGAGGTGGT+TGG | + | chr8.1:53709782-53709801 | MS.gene007827:CDS | 50.0% | |
| GTTCTTCCTGCTGTTGTTGC+TGG | - | chr8.1:53709137-53709156 | None:intergenic | 50.0% | |
| TAGCACAGACGCTAATGCAG+AGG | + | chr8.1:53709473-53709492 | MS.gene007827:CDS | 50.0% | |
| TCCCTCTGTCCTACGAAAGA+GGG | + | chr8.1:53709648-53709667 | MS.gene007827:CDS | 50.0% | |
| TCCCTCTTTCGTAGGACAGA+GGG | - | chr8.1:53709652-53709671 | None:intergenic | 50.0% | |
| TCGACGTTAAGGTCGATGAG+TGG | - | chr8.1:53709348-53709367 | None:intergenic | 50.0% | |
| TCTGGTGAAACAGATCCCAG+AGG | + | chr8.1:53709557-53709576 | MS.gene007827:CDS | 50.0% | |
| TGGATCCAGAAGGGAGAGAA+GGG | + | chr8.1:53709745-53709764 | MS.gene007827:CDS | 50.0% | |
| TTCTCCAACCACCTCTTCTG+TGG | - | chr8.1:53709789-53709808 | None:intergenic | 50.0% | |
| TTGGTGCAGAACAAGGGATC+CGG | + | chr8.1:53710572-53710591 | MS.gene007827:intron | 50.0% | |
| ! | CCTTTTCCCAGATCTGAGAG+TGG | - | chr8.1:53709971-53709990 | None:intergenic | 50.0% |
| ! | TCGTTTGTTGGGAGGTAGGT+CGG | - | chr8.1:53709100-53709119 | None:intergenic | 50.0% |
| ! | TCTGGGATCTGTTTCACCAG+AGG | - | chr8.1:53709558-53709577 | None:intergenic | 50.0% |
| ! | TTCTTGCTATGGCAACCCTC+TGG | + | chr8.1:53709539-53709558 | MS.gene007827:CDS | 50.0% |
| ! | TTTTCGATTGGGGTGGGTGA+GGG | - | chr8.1:53709387-53709406 | None:intergenic | 50.0% |
| !! | CGTCGGTTGGGATGTTGTTT+TGG | - | chr8.1:53709320-53709339 | None:intergenic | 50.0% |
| !! | TAAGTAGATGGTGGGGGTGT+TGG | - | chr8.1:53709246-53709265 | None:intergenic | 50.0% |
| !! | TTTTTCGATTGGGGTGGGTG+AGG | - | chr8.1:53709388-53709407 | None:intergenic | 50.0% |
| !!! | CGGTTGGGATGTTGTTTTGG+TGG | - | chr8.1:53709317-53709336 | None:intergenic | 50.0% |
| CTCCCTCTGTCCTACGAAAG+AGG | + | chr8.1:53709647-53709666 | MS.gene007827:CDS | 55.0% | |
| CTCCCTCTTTCGTAGGACAG+AGG | - | chr8.1:53709653-53709672 | None:intergenic | 55.0% | |
| GTCGATGAGTGGAACAGCGT+CGG | - | chr8.1:53709337-53709356 | None:intergenic | 55.0% | |
| GTGGATCCAGAAGGGAGAGA+AGG | + | chr8.1:53709744-53709763 | MS.gene007827:CDS | 55.0% | |
| GTGGTGAAGGTGGGGTTGAA+GGG | - | chr8.1:53709298-53709317 | None:intergenic | 55.0% | |
| TCGATCCCTTCTCTCCCTTC+TGG | - | chr8.1:53709753-53709772 | None:intergenic | 55.0% | |
| TGGTGCAGAACAAGGGATCC+GGG | + | chr8.1:53710573-53710592 | MS.gene007827:intron | 55.0% | |
| TTTCGATTGGGGTGGGTGAG+GGG | - | chr8.1:53709386-53709405 | None:intergenic | 55.0% | |
| !! | ATGAGTGGAACAGCGTCGGT+TGG | - | chr8.1:53709333-53709352 | None:intergenic | 55.0% |
| !! | GGGGTGTTGGTGATGAAGGT+GGG | - | chr8.1:53709233-53709252 | None:intergenic | 55.0% |
| !! | GGGTGTTGGTGATGAAGGTG+GGG | - | chr8.1:53709232-53709251 | None:intergenic | 55.0% |
| !! | TGAGTGGAACAGCGTCGGTT+GGG | - | chr8.1:53709332-53709351 | None:intergenic | 55.0% |
| GGTGGTGAAGGTGGGGTTGA+AGG | - | chr8.1:53709299-53709318 | None:intergenic | 60.0% | |
| GTGAAGGTGGGGTTGAAGGG+CGG | - | chr8.1:53709295-53709314 | None:intergenic | 60.0% | |
| !! | GGGGGTGTTGGTGATGAAGG+TGG | - | chr8.1:53709234-53709253 | None:intergenic | 60.0% |
| !! | GGTGGGGGTGTTGGTGATGA+AGG | - | chr8.1:53709237-53709256 | None:intergenic | 60.0% |
| GGGGTGGGTGAGGGGAGAGA+AGG | - | chr8.1:53709378-53709397 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 53709075 | 53710631 | 53709075 | ID=MS.gene007827 |
| chr8.1 | mRNA | 53709075 | 53710631 | 53709075 | ID=MS.gene007827.t1;Parent=MS.gene007827 |
| chr8.1 | exon | 53709075 | 53709989 | 53709075 | ID=MS.gene007827.t1.exon1;Parent=MS.gene007827.t1 |
| chr8.1 | CDS | 53709075 | 53709989 | 53709075 | ID=cds.MS.gene007827.t1;Parent=MS.gene007827.t1 |
| chr8.1 | exon | 53710581 | 53710631 | 53710581 | ID=MS.gene007827.t1.exon2;Parent=MS.gene007827.t1 |
| chr8.1 | CDS | 53710581 | 53710631 | 53710581 | ID=cds.MS.gene007827.t1;Parent=MS.gene007827.t1 |
| Gene Sequence |
| Protein sequence |
