AlfalfaGEDB | MS.gene007843

M. sativa cultivar XinJiangDaYe / MS.gene007843

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007843.t1	AET02893.1	87.1	171	8	1	31	201	106	262	1.20E-78	302.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007843.t1	C0LGN2	57.9	197	75	2	9	201	700	892	1.5e-59	230.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007843.t1	G7LB28	87.1	171	8	1	31	201	106	262	9.0e-79	302.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007843.t1	MTR_8g057660	80.628	191	16	2	18	201	86	262	1.16e-107	312
MS.gene007843.t1	MTR_8g059605	69.543	197	56	1	9	201	489	685	2.30e-89	279
MS.gene007843.t1	MTR_8g059615	70.051	197	55	1	9	201	667	863	4.67e-89	281
MS.gene007843.t1	MTR_8g059605	69.543	197	56	1	9	201	684	880	5.76e-88	278
MS.gene007843.t1	MTR_2g073520	62.437	197	66	2	9	201	560	752	1.40e-79	253
MS.gene007843.t1	MTR_2g073540	62.437	197	66	2	9	201	454	646	5.83e-79	251
MS.gene007843.t1	MTR_2g073520	62.176	193	65	2	9	197	692	880	1.30e-77	249
MS.gene007843.t1	MTR_2g073630	62.626	198	66	2	9	202	656	849	2.01e-77	250
MS.gene007843.t1	MTR_2g073640	61.929	197	67	2	9	201	697	889	3.24e-76	247
MS.gene007843.t1	MTR_2g074990	61.421	197	68	2	9	201	680	872	3.47e-76	246

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007843.t1	AT3G14840	57.868	197	75	2	9	201	700	892	3.53e-72	236
MS.gene007843.t1	AT1G53420	58.376	197	74	2	9	201	652	844	6.43e-72	234
MS.gene007843.t1	AT1G07650	56.345	197	79	2	9	201	493	686	6.75e-70	227
MS.gene007843.t1	AT1G53440	57.868	197	75	2	9	201	695	887	4.71e-69	228
MS.gene007843.t1	AT1G07650	56.345	197	79	2	9	201	680	873	6.49e-69	227
MS.gene007843.t1	AT1G07650	56.345	197	79	2	9	201	706	899	9.47e-69	226
MS.gene007843.t1	AT1G07650	56.345	197	79	2	9	201	712	905	9.62e-69	226
MS.gene007843.t1	AT1G53430	57.360	197	76	2	9	201	656	848	2.12e-68	225
MS.gene007843.t1	AT1G53430	57.360	197	76	2	9	201	697	889	2.59e-68	225
MS.gene007843.t1	AT1G29740	59.429	175	60	2	32	201	728	896	1.61e-65	218

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Find 43 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAAATCCGATATCTT+AGG	0.218850	8.1:-53420380	None:intergenic
AACCAAAATCCGATATCTTA+GGG	0.455273	8.1:-53420379	None:intergenic
AACCCTAAGATATCGGATTT+TGG	0.200878	8.1:+53420377	MS.gene007843:CDS
AACCCTTCTCTCTTCTTGAT+TGG	0.319601	8.1:+53420769	MS.gene007843:CDS
AACCTTGCTCATGCACTATT+TGG	0.199654	8.1:+53420101	MS.gene007843:CDS
AAGATTGGTGAAGGAGAATT+TGG	0.310079	8.1:+53419777	MS.gene007843:CDS
AAGGCAGATGTTTATAGTTT+TGG	0.214365	8.1:+53420699	MS.gene007843:CDS
ACCCAATCAAGAAGAGAGAA+GGG	0.596840	8.1:-53420771	None:intergenic
ACCCTTCTCTCTTCTTGATT+GGG	0.377641	8.1:+53420770	MS.gene007843:CDS
ACTAGGAAGAGAATTTGTAT+TGG	0.491630	8.1:+53420257	MS.gene007843:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCAAAATCCGATATCTT+AGG	-	chr8.1:53420383-53420402	None:intergenic	30.0%
AACCAAAATCCGATATCTTA+GGG	-	chr8.1:53420382-53420401	None:intergenic	30.0%
ACTAGGAAGAGAATTTGTAT+TGG	+	chr8.1:53420257-53420276	MS.gene007843:CDS	30.0%
AGACCAAGAAAATTGTCAAT+TGG	+	chr8.1:53420220-53420239	MS.gene007843:CDS	30.0%
ATATCTCAACCCTAAGATAT+CGG	+	chr8.1:53420370-53420389	MS.gene007843:CDS	30.0%
CATGGAGCTTAACAATATTA+GGG	-	chr8.1:53420025-53420044	None:intergenic	30.0%
CGTGAATTTACTAATGAGAT+AGG	+	chr8.1:53419974-53419993	MS.gene007843:intron	30.0%
GACCAAGAAAATTGTCAATT+GGG	+	chr8.1:53420221-53420240	MS.gene007843:CDS	30.0%
GTTGTATTGGAAATTGTTAG+TGG	+	chr8.1:53420726-53420745	MS.gene007843:CDS	30.0%
TTATCTTCTGAATCAAAGCA+AGG	+	chr8.1:53419947-53419966	MS.gene007843:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	53419721	53420818	53419721	ID=MS.gene007843
chr8.1	mRNA	53419721	53420818	53419721	ID=MS.gene007843.t1;Parent=MS.gene007843
chr8.1	exon	53419721	53419812	53419721	ID=MS.gene007843.t1.exon1;Parent=MS.gene007843.t1
chr8.1	CDS	53419721	53419812	53419721	ID=cds.MS.gene007843.t1;Parent=MS.gene007843.t1
chr8.1	exon	53420013	53420122	53420013	ID=MS.gene007843.t1.exon2;Parent=MS.gene007843.t1
chr8.1	CDS	53420013	53420122	53420013	ID=cds.MS.gene007843.t1;Parent=MS.gene007843.t1
chr8.1	exon	53420210	53420459	53420210	ID=MS.gene007843.t1.exon3;Parent=MS.gene007843.t1
chr8.1	CDS	53420210	53420459	53420210	ID=cds.MS.gene007843.t1;Parent=MS.gene007843.t1
chr8.1	exon	53420653	53420818	53420653	ID=MS.gene007843.t1.exon4;Parent=MS.gene007843.t1
chr8.1	CDS	53420653	53420818	53420653	ID=cds.MS.gene007843.t1;Parent=MS.gene007843.t1

Gene Sequence

>MS.gene007843

ATGTATTCACCTTACAACAAATCAAAGCAGCAACGAACAACTTCGATGAATCTCTCAAGATTGGTGAAGGAGAATTTGGTCCAGTTTACAAGGTATATGATGCACAATTTAACGATCATCACGAACAATCATCATAATAAGTTGTAACTGGGTTAATCATAAGTGTATACTGTTTCACGAAATGCAGGGTGTTCTATTAGACGGCACAATAGTAGCAATTAAACAGTTATCTTCTGAATCAAAGCAAGGAACTCGTGAATTTACTAATGAGATAGGAATTATATATGTTAAGTTTACAACACCCTAATATTGTTAAGCTCCATGGCTTATGCGAAGAAGATGATCAGATGTTGTTGATATATGAATACATGGAAAACAACAACCTTGCTCATGCACTATTTGGTAATTACTTTTCTGTGTCCAAGTTTATTGTTGCTAACTTACTTATATGTTCGTAATTGAATTGTATTGATATCTAATTTCTATCAGCCGAAAACGAAGACCAAGAAAATTGTCAATTGGGACTGGACTGGAAAACTAGGAAGAGAATTTGTATTGGTATTGCTAGAGGTTTATCTTACCTCCATGAAGAGTCAAAAATAAAGATCATTCATACGGACATCAAAGCCGCTAATGTGTTGCTAGATAAATATCTCAACCCTAAGATATCGGATTTTGGTTTTGCTAGGGTCACCGAAGAAGGCAAAATCCACATTACCAGTAGAATAACCGGCACATAGTTAGTTCCCATACTTGATACTTTATTGAGTTTTCATGATTTTAAGAAGCAAAAGAATAGAAGTTAAATATTGAAATACTTGTCAAATCATTTTCGATTTTTTATTTTTTTATATAAAAAACACTTGTTTTGATAGTATAAACAATTCAATGTGATATATAACTACTATATTTGATTTATTTTCACTCCACAGTGGATACATGGCTCCTGAGTATGATATGCATGGTTACTTGACAGACAAGGCAGATGTTTATAGTTTTGGAATTGTTGTATTGGAAATTGTTAGTGGAGCCAGCAGTACTCAAGAGGAACCCTTCTCTCTTCTTGATTGGGTAATGTTCTTATCCTCTCCTTATTAG

Protein sequence

>MS.gene007843.t1

MYSPYNKSKQQRTTSMNLSRLVKENLVQFTSLQHPNIVKLHGLCEEDDQMLLIYEYMENNNLAHALFAENEDQENCQLGLDWKTRKRICIGIARGLSYLHEESKIKIIHTDIKAANVLLDKYLNPKISDFGFARVTEEGKIHITSRITGTYGYMAPEYDMHGYLTDKADVYSFGIVVLEIVSGASSTQEEPFSLLDWVMFLSSPY