AlfalfaGEDB | MS.gene007864

M. sativa cultivar XinJiangDaYe / MS.gene007864

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007864.t1	AMB51752.1	99.3	290	2	0	1	290	1	290	9.50E-149	536.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007864.t1	A0A3Q7HH64	72.3	249	65	3	1	248	1	246	5.3e-100	365.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007864.t1	A0A0X8DSR8	99.3	290	2	0	1	290	1	290	6.8e-149	536.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene007864.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007864.t1	MTR_8g059170	97.241	290	8	0	1	290	1	290	0.0	591
MS.gene007864.t1	MTR_2g079990	66.885	305	81	7	1	290	3	302	2.86e-134	384
MS.gene007864.t1	MTR_2g079990	61.261	333	81	8	1	290	3	330	3.74e-128	370
MS.gene007864.t1	MTR_3g088110	70.552	163	46	2	10	171	3	164	4.23e-79	241
MS.gene007864.t1	MTR_7g085220	46.233	292	112	10	1	266	1	273	1.36e-74	232
MS.gene007864.t1	MTR_2g080010	64.740	173	50	3	11	172	12	184	1.65e-74	232
MS.gene007864.t1	MTR_4g089135	63.934	183	43	4	14	173	15	197	2.31e-74	231
MS.gene007864.t1	MTR_8g094580	66.092	174	52	3	12	179	5	177	6.06e-74	228
MS.gene007864.t1	MTR_3g096920	67.683	164	45	3	11	170	4	163	1.44e-73	228
MS.gene007864.t1	MTR_5g041940	62.500	160	58	1	12	169	1	160	9.56e-72	222

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007864.t1	AT4G27410	68.030	269	65	6	1	265	1	252	1.94e-119	344
MS.gene007864.t1	AT4G27410	64.336	286	64	7	1	265	1	269	1.18e-115	335
MS.gene007864.t1	AT1G52890	64.621	277	81	7	1	263	1	274	1.88e-115	335
MS.gene007864.t1	AT3G15500	60.473	296	98	6	1	281	1	292	6.53e-113	328
MS.gene007864.t1	AT1G01720	70.122	164	46	2	12	173	5	167	1.01e-78	241
MS.gene007864.t1	AT5G08790	61.749	183	66	2	10	189	3	184	3.22e-75	231
MS.gene007864.t1	AT3G04070	65.318	173	48	4	6	168	4	174	2.80e-73	228
MS.gene007864.t1	AT5G63790	61.081	185	62	3	10	188	46	226	4.01e-73	227
MS.gene007864.t1	AT5G63790	61.081	185	62	3	10	188	56	236	7.17e-73	227
MS.gene007864.t1	AT1G61110	68.263	167	42	3	14	169	16	182	1.45e-72	226

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Find 79 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGAAGCTCCTCATCAG+TGG	0.476509	8.4:-48394086	None:intergenic
AAGTCAATTTCAGCAATAAT+TGG	0.338246	8.4:-48394151	None:intergenic
AAGTCCATGTTACCAAACGG+TGG	0.730264	8.4:-48395235	None:intergenic
AAGTTCGGGTTTCACAACAT+GGG	0.678618	8.4:+48395088	MS.gene007864:CDS
AATGGTATTTCTTCAGTCCA+AGG	0.554883	8.4:+48394539	MS.gene007864:CDS
AATTCAGCATCCCCTGACTC+TGG	0.524401	8.4:-48395180	None:intergenic
ACAACTGAAGGTAGAAAAGT+TGG	0.474990	8.4:+48394646	MS.gene007864:CDS
ACAAGAAGCTCCTCATCAGT+GGG	0.557935	8.4:-48394085	None:intergenic
ACTCCGAATGCTACAGCAAG+AGG	0.568493	8.4:+48395063	MS.gene007864:CDS
ACTTGTACAAGTTTGATCCT+TGG	0.451700	8.4:+48394170	MS.gene007864:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAGGTAATTATCACCAATTT+AGG	+	chr8.4:48394200-48394219	MS.gene007864:intron	30.0%
CATTCTTTGCTTGAAAATGT+TGG	-	chr8.4:48394941-48394960	None:intergenic	30.0%
CTCATCAATAAAAATGAGCA+AGG	-	chr8.4:48394819-48394838	None:intergenic	30.0%
GACAAAATTATCACAACTGA+AGG	+	chr8.4:48394634-48394653	MS.gene007864:CDS	30.0%
TAACTATTGCAAAATCACAG+TGG	-	chr8.4:48394315-48394334	None:intergenic	30.0%
AATGGTATTTCTTCAGTCCA+AGG	+	chr8.4:48394539-48394558	MS.gene007864:CDS	35.0%
ACAACTGAAGGTAGAAAAGT+TGG	+	chr8.4:48394646-48394665	MS.gene007864:CDS	35.0%
ACTTGTACAAGTTTGATCCT+TGG	+	chr8.4:48394170-48394189	MS.gene007864:CDS	35.0%
ATGGTATTTCTTCAGTCCAA+GGG	+	chr8.4:48394540-48394559	MS.gene007864:CDS	35.0%
CTTGTACAAGTTTGATCCTT+GGG	+	chr8.4:48394171-48394190	MS.gene007864:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	48394022	48395291	48394022	ID=MS.gene007864
chr8.4	mRNA	48394022	48395291	48394022	ID=MS.gene007864.t1;Parent=MS.gene007864
chr8.4	exon	48394022	48394202	48394022	ID=MS.gene007864.t1.exon1;Parent=MS.gene007864.t1
chr8.4	CDS	48394022	48394202	48394022	ID=cds.MS.gene007864.t1;Parent=MS.gene007864.t1
chr8.4	exon	48394515	48394789	48394515	ID=MS.gene007864.t1.exon2;Parent=MS.gene007864.t1
chr8.4	CDS	48394515	48394789	48394515	ID=cds.MS.gene007864.t1;Parent=MS.gene007864.t1
chr8.4	exon	48394878	48395291	48394878	ID=MS.gene007864.t1.exon3;Parent=MS.gene007864.t1
chr8.4	CDS	48394878	48395291	48394878	ID=cds.MS.gene007864.t1;Parent=MS.gene007864.t1

Gene Sequence

>MS.gene007864

ATGGGAGTTCCAGAGAGAGATCCTCTTTCACAGTTGAGTTTACCACCTGGTTTCAGATTCTTCCCCACTGATGAGGAGCTTCTTGTTCAGTATCTATGTCGTAAAGTTGCAGGACATCATTTTTCTTTGCCAATTATTGCTGAAATTGACTTGTACAAGTTTGATCCTTGGGTTCTTCCAGGTAATTATCACCAATTTAGGTTGCAATTGCAGAATTGTTCATGTCTTTAAATTTTAAAATATTAAATGTATGTTTGATATTTCCGTAAGTTTGTCAGAATCACGGTGAACCACTGTGATTTTGCAATAGTTACACTTTCAAGCTTGTAACTTTTGCAAGATCACACTGAAATTCTGACAATAATACGGTAATATGAAACATGCACTAAAATCACAACTATGTTAATACTGTTGCTAAATATTTTGTGTTGTTTATATTTAATTTGTTTAATTGAGATGCAATTTTAACATTGTTGTTATGGTTTTGGTGCAGGCAAGGCGAATTTTGGTGAGAAAGAATGGTATTTCTTCAGTCCAAGGGACAGGAAATATCCAAATGGTTCTAGACCAAACAGAGTTGCTGGTTCTGGTTACTGGAAAGCCACAGGAACAGACAAAATTATCACAACTGAAGGTAGAAAAGTTGGCATAAAAAAAGCACTTGTTTTCTATATTGGCAAAGCACCAAAAGGAACAAAAACTAATTGGATTATGCATGAGTATCGTCTTCTTGATGCTTCGCGAAAACACAATCTTGGTAGCACAAAAGTAAGCAACACAATCGTATTATATTTCCTTGCTCATTTTTATTGATGAGAAAAGTAAAGAATCTAACTTATTTGATTTATTGATGCAGCTTGATGATTGGGTTTTGTGTCGAATATACAAGAAAAACTCAAGCTCGCAAAAGGAAATTCCAACATTTTCAAGCAAAGAATGCAGCAATGGTTCTTCGCCTTCATCGTCGTCCCAGGTGGACGAAATGTTGGACTCGTTCCTGGAAATTGATGATCAGAGCTTTGCATTGCCGCGGGTAACATCACTCCGAATGCTACAGCAAGAGGAGAAGTTCGGGTTTCACAACATGGGTGCTGGACTTTTCTCTGATTGGGTTAACCCGACAGATATTGAATCCTCACCGGAGTTTGGATTAGGAAACCAGAGTCAGGGGATGCTGAATTACGGTTGTAATGACTATTGTGTTCCTTCCGTGCCACCGTTTGGTAACATGGACTTGTCGGCGGAGTCCAAGAACCCCACCGACGAAGAG

Protein sequence

>MS.gene007864.t1

MGVPERDPLSQLSLPPGFRFFPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPGKANFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDASRKHNLGSTKLDDWVLCRIYKKNSSSQKEIPTFSSKECSNGSSPSSSSQVDEMLDSFLEIDDQSFALPRVTSLRMLQQEEKFGFHNMGAGLFSDWVNPTDIESSPEFGLGNQSQGMLNYGCNDYCVPSVPPFGNMDLSAESKNPTDEE