AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene008002

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008002.t1 MTR_3g071860 96.369 1267 46 0 1 1267 1 1267 0.0 2529
MS.gene008002.t1 MTR_7g026650 79.415 855 156 7 413 1266 317 1152 0.0 1361
MS.gene008002.t1 MTR_7g026650 72.611 314 79 2 21 333 11 318 1.70e-142 463
MS.gene008002.t1 MTR_5g083300 55.414 1339 481 27 5 1266 4 1303 0.0 1342
MS.gene008002.t1 MTR_5g083300 55.414 1339 481 27 5 1266 41 1340 0.0 1342
MS.gene008002.t1 MTR_1g081750 72.191 881 215 11 388 1266 263 1115 0.0 1246
MS.gene008002.t1 MTR_1g081750 67.729 251 77 2 1 251 1 247 3.92e-99 342
MS.gene008002.t1 MTR_7g026620 54.463 773 190 13 398 1170 34 644 0.0 735
MS.gene008002.t1 MTR_7g450860 33.724 768 433 19 512 1253 540 1257 3.56e-112 382
MS.gene008002.t1 MTR_7g450820 35.221 724 396 18 550 1247 537 1213 1.65e-111 379
MS.gene008002.t1 MTR_7g029525 33.924 734 431 19 529 1247 608 1302 4.56e-108 371
MS.gene008002.t1 MTR_7g050445 32.859 773 430 20 529 1267 581 1298 6.97e-104 359
MS.gene008002.t1 MTR_7g450790 33.333 720 430 16 549 1255 743 1425 2.28e-103 359
MS.gene008002.t1 MTR_4g088650 32.785 729 395 16 550 1255 548 1204 2.38e-98 342
MS.gene008002.t1 MTR_7g450780 31.667 780 450 20 514 1257 602 1334 2.03e-97 341
MS.gene008002.t1 MTR_7g026550 38.796 598 129 14 551 1147 6 367 2.34e-95 311
MS.gene008002.t1 MTR_2g437480 30.959 730 396 21 508 1222 365 1001 4.69e-88 309
MS.gene008002.t1 MTR_8g037345 30.652 721 410 21 508 1222 216 852 2.49e-84 296
MS.gene008002.t1 MTR_1g080420 26.030 607 363 19 675 1227 576 1150 5.30e-41 166
MS.gene008002.t1 MTR_1g080420 26.030 607 363 19 675 1227 707 1281 6.57e-41 165
MS.gene008002.t1 MTR_3g071660 47.486 179 42 3 846 1024 1 127 2.28e-35 131
MS.gene008002.t1 MTR_8g094070 24.570 582 338 18 665 1214 369 881 4.19e-31 133
MS.gene008002.t1 MTR_8g094070 24.570 582 338 18 665 1214 369 881 7.68e-31 132
MS.gene008002.t1 MTR_5g004720 23.042 664 372 24 640 1260 159 726 1.47e-28 124
MS.gene008002.t1 MTR_5g020000 25.730 548 318 18 716 1250 206 677 7.15e-27 119
MS.gene008002.t1 MTR_4g096930 24.917 606 326 25 665 1241 717 1222 5.72e-24 110
MS.gene008002.t1 MTR_7g026590 58.947 95 33 2 466 560 11 99 6.88e-24 98.2
MS.gene008002.t1 MTR_3g106210 24.217 607 347 21 685 1256 270 798 7.14e-22 103
MS.gene008002.t1 MTR_3g106210 24.217 607 347 21 685 1256 270 798 7.38e-22 103
MS.gene008002.t1 MTR_7g026610 66.197 71 24 0 200 270 13 83 1.07e-21 90.9
MS.gene008002.t1 MTR_3g106210 24.217 607 347 21 685 1256 270 798 3.41e-21 101
MS.gene008002.t1 MTR_3g106210 24.217 607 347 21 685 1256 270 798 3.93e-21 100
MS.gene008002.t1 MTR_4g032945 75.472 53 13 0 102 154 1 53 4.36e-21 89.0
MS.gene008002.t1 MTR_1g013190 25.301 498 299 19 716 1205 308 740 1.80e-20 99.0
MS.gene008002.t1 MTR_3g084600 40.945 127 37 2 588 714 16 104 3.28e-20 90.1
MS.gene008002.t1 MTR_2g084695 28.070 285 152 7 901 1185 9 240 1.95e-19 90.9
MS.gene008002.t1 MTR_7g026600 62.295 61 23 0 261 321 4 64 3.34e-19 83.2
MS.gene008002.t1 MTR_3g071670 49.000 100 15 2 931 1030 2 65 9.57e-19 82.0
MS.gene008002.t1 MTR_5g005840 23.732 552 320 17 710 1249 379 841 1.69e-18 92.4
MS.gene008002.t1 MTR_1g105050 23.370 552 321 18 710 1248 392 854 2.65e-16 85.1
MS.gene008002.t1 MTR_4g078495 32.335 167 100 4 1077 1236 530 690 3.94e-15 81.3
MS.gene008002.t1 MTR_4g078460 32.335 167 100 4 1077 1236 816 976 4.34e-15 81.3
MS.gene008002.t1 MTR_1g069755 31.429 140 90 3 1083 1222 750 883 7.14e-13 73.9
MS.gene008002.t1 MTR_7g045505 23.133 549 304 21 722 1232 18 486 8.33e-12 70.5
MS.gene008002.t1 MTR_8g038125 73.529 34 9 0 585 618 13 46 1.01e-11 61.6
MS.gene008002.t1 MTR_7g045505 23.133 549 304 21 722 1232 18 486 1.10e-11 70.1
MS.gene008002.t1 MTR_5g090090 29.213 178 117 4 1035 1211 902 1071 1.36e-11 70.1
MS.gene008002.t1 MTR_3g053910 28.652 178 118 4 1035 1211 856 1025 1.40e-11 70.1
MS.gene008002.t1 MTR_3g053910 28.652 178 118 4 1035 1211 885 1054 1.54e-11 69.7
MS.gene008002.t1 MTR_5g090090 29.213 178 117 4 1035 1211 902 1071 1.56e-11 69.7
MS.gene008002.t1 MTR_7g090960 29.545 176 116 5 1049 1223 1173 1341 2.34e-11 69.3
MS.gene008002.t1 MTR_7g090960 29.545 176 116 5 1049 1223 1092 1260 2.66e-11 68.9
MS.gene008002.t1 MTR_8g030550 23.782 513 282 20 710 1194 1003 1434 6.08e-11 67.8
MS.gene008002.t1 MTR_7g089190 38.298 94 57 1 1113 1205 690 783 6.74e-11 67.4
MS.gene008002.t1 MTR_8g030550 23.782 513 282 20 710 1194 1003 1434 6.87e-11 67.8
MS.gene008002.t1 MTR_8g030550 23.782 513 282 20 710 1194 1003 1434 7.53e-11 67.4
MS.gene008002.t1 MTR_3g071695 84.848 33 5 0 1223 1255 11 43 9.83e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008002.t1 AT3G42670 58.511 846 304 14 443 1266 434 1254 0.0 954
MS.gene008002.t1 AT3G42670 58.511 846 304 14 443 1266 434 1254 0.0 954
MS.gene008002.t1 AT3G42670 58.511 846 304 14 443 1266 434 1254 0.0 954
MS.gene008002.t1 AT3G42670 58.412 844 310 13 443 1266 434 1256 0.0 952
MS.gene008002.t1 AT5G20420 60.951 799 286 11 479 1266 477 1260 0.0 950
MS.gene008002.t1 AT5G20420 39.820 334 156 12 5 321 3 308 4.88e-56 214
MS.gene008002.t1 AT3G24340 32.194 761 425 18 510 1255 430 1114 2.59e-105 360
MS.gene008002.t1 AT1G05490 32.329 730 430 18 548 1251 693 1384 8.99e-101 352
MS.gene008002.t1 AT2G21450 30.746 657 371 19 584 1222 92 682 6.03e-80 279
MS.gene008002.t1 AT2G16390 30.307 749 412 21 493 1222 193 850 6.55e-80 283
MS.gene008002.t1 AT2G16390 30.307 749 412 21 493 1222 190 847 9.49e-80 282
MS.gene008002.t1 AT2G21450 30.746 657 371 19 584 1222 183 773 1.65e-79 280
MS.gene008002.t1 AT2G21450 30.746 657 371 19 584 1222 190 780 1.95e-79 280
MS.gene008002.t1 AT3G19210 23.383 603 347 22 681 1246 180 704 1.47e-29 128
MS.gene008002.t1 AT3G19210 23.802 605 344 23 681 1246 180 706 5.21e-29 126
MS.gene008002.t1 AT3G19210 23.802 605 344 23 681 1246 180 706 6.77e-29 125
MS.gene008002.t1 AT5G63950 24.826 576 331 22 671 1214 367 872 3.64e-28 124
MS.gene008002.t1 AT5G63950 25.480 573 314 23 671 1214 367 855 4.04e-28 123
MS.gene008002.t1 AT1G08600 26.393 341 190 13 680 1011 718 1006 8.92e-24 109
MS.gene008002.t1 AT1G08600 34.969 163 94 4 1074 1227 1123 1282 1.25e-17 89.7
MS.gene008002.t1 AT1G08600 26.393 341 190 13 680 1011 718 1006 8.92e-24 109
MS.gene008002.t1 AT1G08600 34.969 163 94 4 1074 1227 1123 1282 1.25e-17 89.7
MS.gene008002.t1 AT1G08600 26.393 341 190 13 680 1011 718 1006 8.92e-24 109
MS.gene008002.t1 AT1G08600 34.969 163 94 4 1074 1227 1123 1282 1.25e-17 89.7
MS.gene008002.t1 AT5G44800 24.685 555 313 21 712 1249 707 1173 4.21e-21 101
MS.gene008002.t1 AT4G31900 23.486 545 305 21 671 1205 214 656 8.20e-19 93.6
MS.gene008002.t1 AT4G31900 23.646 554 293 21 671 1205 173 615 1.03e-18 93.2
MS.gene008002.t1 AT4G31900 24.000 550 296 22 671 1205 214 656 1.09e-18 93.2
MS.gene008002.t1 AT1G08600 34.969 163 94 4 1074 1227 1102 1261 1.34e-17 89.7
MS.gene008002.t1 AT3G06010 23.732 552 321 17 710 1249 419 882 3.00e-17 88.2
MS.gene008002.t1 AT2G44980 25.636 511 289 22 722 1218 80 513 2.22e-16 85.5
MS.gene008002.t1 AT1G03750 30.939 181 111 5 1064 1236 523 697 6.17e-16 84.0
MS.gene008002.t1 AT5G66750 34.091 176 109 4 1084 1258 540 709 1.07e-15 82.8
MS.gene008002.t1 AT2G25170 25.895 363 201 14 857 1205 436 744 1.52e-15 82.8
MS.gene008002.t1 AT2G25170 25.895 363 201 14 857 1205 419 727 1.56e-15 82.8
MS.gene008002.t1 AT2G25170 25.895 363 201 14 857 1205 419 727 1.56e-15 82.8
MS.gene008002.t1 AT2G25170 25.895 363 201 14 857 1205 445 753 1.89e-15 82.8
MS.gene008002.t1 AT2G44980 24.310 580 332 24 672 1218 26 531 3.03e-14 78.6
MS.gene008002.t1 AT2G44980 24.809 524 296 22 722 1218 80 532 5.65e-14 77.4
MS.gene008002.t1 AT3G57300 32.414 145 92 3 1084 1228 1222 1360 2.83e-12 72.4
MS.gene008002.t1 AT3G57300 32.414 145 92 3 1084 1228 1222 1360 2.83e-12 72.4
MS.gene008002.t1 AT2G28290 31.847 157 105 2 1100 1255 1101 1256 3.02e-12 72.4
MS.gene008002.t1 AT2G28290 31.847 157 105 2 1100 1255 1101 1256 3.38e-12 72.0
MS.gene008002.t1 AT2G28290 31.847 157 105 2 1100 1255 1101 1256 3.38e-12 72.0
MS.gene008002.t1 AT2G28290 31.847 157 105 2 1100 1255 1102 1257 3.38e-12 72.0
MS.gene008002.t1 AT3G57300 32.414 145 92 3 1084 1228 1255 1393 3.49e-12 72.0
MS.gene008002.t1 AT2G28290 31.847 157 105 2 1100 1255 1101 1256 3.49e-12 72.0
MS.gene008002.t1 AT2G28290 31.847 157 105 2 1100 1255 1102 1257 3.49e-12 72.0
MS.gene008002.t1 AT2G18760 38.542 96 58 1 1127 1222 840 934 5.56e-12 71.2
MS.gene008002.t1 AT2G18760 30.714 140 91 3 1083 1222 742 875 6.11e-12 71.2
MS.gene008002.t1 AT2G18760 30.714 140 91 3 1083 1222 742 875 6.11e-12 71.2
MS.gene008002.t1 AT2G18760 30.714 140 91 3 1083 1222 742 875 6.11e-12 71.2
MS.gene008002.t1 AT2G18760 30.714 140 91 3 1083 1222 742 875 6.11e-12 71.2
MS.gene008002.t1 AT2G18760 30.714 140 91 3 1083 1222 742 875 6.11e-12 71.2
MS.gene008002.t1 AT2G18760 30.714 140 91 3 1083 1222 742 875 6.11e-12 71.2
MS.gene008002.t1 AT5G19310 29.319 191 122 4 1065 1254 427 605 8.07e-12 70.5
MS.gene008002.t1 AT5G19310 29.319 191 122 4 1065 1254 691 869 8.18e-12 70.5
MS.gene008002.t1 AT2G13370 33.846 130 79 2 1086 1214 957 1080 1.26e-11 70.1
MS.gene008002.t1 AT2G13370 33.846 130 79 2 1086 1214 957 1080 1.26e-11 70.1
MS.gene008002.t1 AT2G13370 33.846 130 79 2 1086 1214 957 1080 1.26e-11 70.1
MS.gene008002.t1 AT5G05130 34.959 123 74 3 1084 1205 725 842 3.48e-11 68.6

Find 187 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGGAAGAATCATTGATTT+TGG 0.165047 3.3:+62439897 None:intergenic
TTCTCCTCTTTGTACCTCTT+TGG 0.168701 3.3:+62440395 None:intergenic
ATTAGTCAAATAATGATATT+TGG 0.190711 3.3:+62441744 None:intergenic
TGATGGTGATGGCAAGTTTA+AGG 0.208095 3.3:-62441791 MS.gene008002:CDS
TTTAGATTGGATGAAGAAAT+TGG 0.208762 3.3:-62440831 MS.gene008002:CDS
CCTCTGAAATTAAGCCTTAT+AGG 0.223041 3.3:-62442362 MS.gene008002:CDS
AACAAGACTGTTGGAGAAAA+AGG 0.259687 3.3:-62441320 MS.gene008002:CDS
TCATCACTTGATATTGTTGT+AGG 0.263435 3.3:+62441661 None:intergenic
AACCTTGATTTAGTGCTTCT+AGG 0.271299 3.3:+62439663 None:intergenic
ACTATCCCTGGATTCTTTCT+TGG 0.272245 3.3:+62440866 None:intergenic
CATATAAGTTGTTCTCTTGT+AGG 0.274870 3.3:+62441930 None:intergenic
TTATAATCTTCATCAACTTT+TGG 0.276698 3.3:+62440335 None:intergenic
TAGTGATGTCAAACATGTTT+TGG 0.279882 3.3:-62439859 MS.gene008002:CDS
GCATAACATTGCTGGCTCTA+TGG 0.281856 3.3:-62440177 MS.gene008002:CDS
TCTCCTCTTTGTACCTCTTT+GGG 0.286021 3.3:+62440396 None:intergenic
ACTATCTATTATTTCCTTGC+AGG 0.289125 3.3:+62441408 None:intergenic
TGGTGTTGATGTATTGAATT+TGG 0.296843 3.3:-62441698 MS.gene008002:CDS
ACATCAAGTTATCTTCTTGA+TGG 0.297384 3.3:-62441211 MS.gene008002:CDS
GCAAAATGGTAAAGAGATTA+TGG 0.302598 3.3:-62438926 MS.gene008002:CDS
AGAACTTCATGAACAAATTT+CGG 0.305114 3.3:+62439534 None:intergenic
CTTACTGGAATAGACGTAAA+TGG 0.306756 3.3:+62443160 None:intergenic
ATTCAATGGCGCCCATAAAA+AGG 0.307589 3.3:-62444303 None:intergenic
CAAGATTGTGTATCAAGTTA+TGG 0.313307 3.3:-62442205 MS.gene008002:CDS
TCGACCGGGCCAGCAGAAAA+TGG 0.318508 3.3:-62438704 MS.gene008002:CDS
CTAATGATATCGACAATGTT+TGG 0.321273 3.3:-62440265 MS.gene008002:CDS
TTCTCTGCTTGCCATTTAGA+AGG 0.325243 3.3:+62438568 None:intergenic
CCAAAATCAATGATTCTTCC+TGG 0.329198 3.3:-62439897 MS.gene008002:CDS
ATTGATATATCTATGCTATT+AGG 0.336391 3.3:-62443208 MS.gene008002:CDS
ACTTCATGTTGTGGATGATA+TGG 0.339055 3.3:-62441569 MS.gene008002:CDS
ACATTGTTTCAGAACAATTT+CGG 0.344101 3.3:-62439588 MS.gene008002:CDS
TCTGATGAATCCCACCTATA+AGG 0.345661 3.3:+62442348 None:intergenic
CTCAACCTCAAGAGGGTAAC+TGG 0.345817 3.3:+62439200 None:intergenic
AGGGCTTTCTCTCAATGCTT+TGG 0.345836 3.3:+62439716 None:intergenic
AATTCTTCTGAGACTCTTCC+TGG 0.348075 3.3:-62439309 MS.gene008002:CDS
AGCAAATTTGATTTGAGAAA+AGG 0.352698 3.3:-62439075 MS.gene008002:CDS
GCACTTTGTCATCAGATATT+CGG 0.354010 3.3:-62443285 MS.gene008002:CDS
TCAACTTCATGTGATGGCTT+TGG 0.355507 3.3:+62442048 None:intergenic
AAGTATTATGTTGAAGCCTT+TGG 0.358364 3.3:+62442412 None:intergenic
TTGTGGAAGATCCTTCTAAA+TGG 0.362063 3.3:-62438579 MS.gene008002:CDS
GAGTGATCAAAAGGTTAATA+AGG 0.362826 3.3:-62441860 MS.gene008002:CDS
TTTCTTTGGCATAACATTGC+TGG 0.370580 3.3:-62440185 MS.gene008002:CDS
GAAATGTATCCCTTCCCATT+TGG 0.379249 3.3:+62441537 None:intergenic
GTTCTACCGCCTTTATGATC+TGG 0.381332 3.3:+62441445 None:intergenic
ACAGTGCAGTGAAGAAAATA+AGG 0.381838 3.3:-62440372 MS.gene008002:CDS
AAGATTGTGTATCAAGTTAT+GGG 0.386679 3.3:-62442204 MS.gene008002:CDS
GGAAGAATATCCTGATGATT+TGG 0.399058 3.3:-62441266 MS.gene008002:CDS
TCATCAAGTATCAAGATTCC+AGG 0.400291 3.3:+62439696 None:intergenic
GCTCAAAACAAATCTTACTT+TGG 0.400942 3.3:+62439050 None:intergenic
ACAGAAACTACAGAGGAAAA+TGG 0.408346 3.3:-62439232 MS.gene008002:CDS
AGTTACTTGAAGTTATTTCC+AGG 0.421538 3.3:-62440053 MS.gene008002:CDS
TAATGATATCGACAATGTTT+GGG 0.425400 3.3:-62440264 MS.gene008002:CDS
CACAATCTAGATTACTCGTT+GGG 0.425426 3.3:-62442308 MS.gene008002:CDS
AGTAATATTCTCAATTCTGT+TGG 0.426455 3.3:+62439618 None:intergenic
AGCATAGATATATCAATTCC+AGG 0.429264 3.3:+62443214 None:intergenic
TCATTAGTCAATGGTTCATC+AGG 0.430750 3.3:+62440281 None:intergenic
GCATTTGAAGCAGTATTGAA+TGG 0.430979 3.3:-62443388 MS.gene008002:CDS
AAACTGACATTATTAGTCCT+TGG 0.435671 3.3:-62442176 MS.gene008002:CDS
ATATAAGTTGTTCTCTTGTA+GGG 0.439124 3.3:+62441931 None:intergenic
ATTTCTTGTGCAAAGAAGAA+TGG 0.444673 3.3:-62441718 MS.gene008002:CDS
TGATGATTTGGATGCCTTGT+GGG 0.445174 3.3:-62441254 MS.gene008002:CDS
TCAAGTGATGAAGAAGTTGA+TGG 0.452513 3.3:-62441649 MS.gene008002:CDS
GTCGTACACATCAATAAAAC+CGG 0.453824 3.3:+62439338 None:intergenic
AAGAAAAGAAATGATGAGAA+AGG 0.454786 3.3:+62440079 None:intergenic
TTGACATCACTAGAAGGTCT+TGG 0.457036 3.3:+62439870 None:intergenic
GGTGTCGTCGAACTTGAACC+TGG 0.461275 3.3:+62439918 None:intergenic
GTTAACTTATATGATGATCA+AGG 0.462568 3.3:-62442507 MS.gene008002:CDS
CATGATTATGAAGAATGAAA+AGG 0.465758 3.3:-62438488 MS.gene008002:CDS
CATGGCCGTCGAACCTCTCC+AGG 0.467950 3.3:-62439936 MS.gene008002:CDS
CACAAGGCATCCAAATCATC+AGG 0.468278 3.3:+62441256 None:intergenic
ATCAAAAGCTCAACCTCAAG+AGG 0.468504 3.3:+62439192 None:intergenic
ACATCAAATTGAGAAACAAT+AGG 0.472158 3.3:+62442108 None:intergenic
ATATCACATGCTCCTGGAGC+AGG 0.473334 3.3:-62440107 MS.gene008002:CDS
TATTTAAAGAGAAGATAAAG+AGG 0.473356 3.3:-62441597 MS.gene008002:CDS
GATTGAAGATGATATACTTA+GGG 0.473462 3.3:-62438545 MS.gene008002:CDS
AGATTGAAGATGATATACTT+AGG 0.475140 3.3:-62438546 MS.gene008002:CDS
ACACAACCTACGTAACGTTC+AGG 0.477670 3.3:+62441991 None:intergenic
CTAGAAGGTCTTGGAAATCC+AGG 0.479150 3.3:+62439879 None:intergenic
ACACCCTAGTGTTCTTGTCA+TGG 0.484111 3.3:-62439805 MS.gene008002:CDS
AGGACTAGAGGTCGTTTCCC+TGG 0.486339 3.3:+62440035 None:intergenic
TTCCTTGCAGGCATCAGCGT+TGG 0.488224 3.3:+62441420 None:intergenic
CACCCTAGTGTTCTTGTCAT+GGG 0.490664 3.3:-62439804 MS.gene008002:CDS
CTGGAGAGGTTCGACGGCCA+TGG 0.491604 3.3:+62439937 None:intergenic
GTGCCGGTTTATCTTATCCA+TGG 0.492001 3.3:-62439954 MS.gene008002:CDS
ACAGTAGGCTCTTCTTCAGT+TGG 0.493427 3.3:+62441361 None:intergenic
GAGCTAGACTTGTTTGAAAG+AGG 0.495712 3.3:-62438892 MS.gene008002:CDS
AAAGAGATTATGGTACTAAC+GGG 0.497650 3.3:-62438916 MS.gene008002:CDS
CATGAAGAACCAGATCATAA+AGG 0.499072 3.3:-62441454 MS.gene008002:CDS
TATTATGTTGAAGCCTTTGG+AGG 0.500254 3.3:+62442415 None:intergenic
TTGTCGATATCATTAGTCAA+TGG 0.500652 3.3:+62440272 None:intergenic
TGGTGGTAAGAGTGATCAAA+AGG 0.501525 3.3:-62441869 MS.gene008002:CDS
ATCATGTTCACAACTATCCC+TGG 0.505981 3.3:+62440854 None:intergenic
CTCAGAAATGTCACGTATTG+CGG 0.506823 3.3:+62440776 None:intergenic
AAGCAGTATTGAATGGATCA+TGG 0.507736 3.3:-62443381 MS.gene008002:CDS
AACACAGCCACTACTTGAGT+TGG 0.510525 3.3:+62440130 None:intergenic
AAAATGGAAGATTCCTGTGC+CGG 0.511195 3.3:-62439970 MS.gene008002:CDS
TATTGATGAGGAGAAGATGC+AGG 0.512826 3.3:-62439388 MS.gene008002:CDS
AAGCCATCACATGAAGTTGA+AGG 0.513509 3.3:-62442045 MS.gene008002:CDS
CAGATATTCGGATAAGATCA+AGG 0.513601 3.3:-62443273 MS.gene008002:CDS
TTCAGTATCAATGAAACGTA+AGG 0.514290 3.3:+62443318 None:intergenic
ACTTCATGTGATGGCTTTGG+TGG 0.514522 3.3:+62442051 None:intergenic
CTTCAACATAATACTTGTGA+AGG 0.515406 3.3:-62442405 MS.gene008002:CDS
TCAATCAATGCTTGTGCTGA+AGG 0.515842 3.3:-62438814 MS.gene008002:CDS
GAAGAACTACTTGGAAAGAG+TGG 0.517977 3.3:-62438630 MS.gene008002:CDS
AGGTTGTGTTGTTGAGAAGT+TGG 0.518892 3.3:-62441977 MS.gene008002:CDS
CGGCCATGGATAAGATAAAC+CGG 0.521874 3.3:+62439951 None:intergenic
TTCACAACATTTATAAGCCA+AGG 0.522728 3.3:+62442159 None:intergenic
AACTCTATTAAGAATCTCAC+AGG 0.523720 3.3:+62438970 None:intergenic
GTTACTGACGACCGGGTCGA+TGG 0.527013 3.3:-62438668 MS.gene008002:CDS
CTGATACCAAGAAAGAATCC+AGG 0.527093 3.3:-62440872 MS.gene008002:CDS
GTGTATCAGTTACTGACGAC+CGG 0.528339 3.3:-62438676 MS.gene008002:CDS
GTTACTTGAAGTTATTTCCA+GGG 0.528637 3.3:-62440052 MS.gene008002:CDS
ACATGTTTGACATCACTAGA+AGG 0.528845 3.3:+62439864 None:intergenic
AAGCCTTCAACTTCATGTGA+TGG 0.530172 3.3:+62442042 None:intergenic
TACAATCTCATGCTGTTCAT+CGG 0.532890 3.3:+62439254 None:intergenic
AGATGATATACTTAGGGAGA+TGG 0.537029 3.3:-62438539 MS.gene008002:CDS
GTTGTTGAGAAGTTGGAAGT+TGG 0.537957 3.3:-62441970 MS.gene008002:CDS
CTCTTCTTCAGATTCAGAAG+AGG 0.540428 3.3:-62441893 MS.gene008002:CDS
ATCCTAGAAGCACTAAATCA+AGG 0.543534 3.3:-62439665 MS.gene008002:CDS
AGCTAGACTTGTTTGAAAGA+GGG 0.545005 3.3:-62438891 MS.gene008002:CDS
TGTGTTATATCACATGCTCC+TGG 0.545385 3.3:-62440113 MS.gene008002:CDS
AAATTGACATGAACATTGAT+CGG 0.547067 3.3:+62442533 None:intergenic
GGAATCTTGATACTTGATGA+AGG 0.550715 3.3:-62439693 MS.gene008002:CDS
CTCTATGGAACCATCACTCA+TGG 0.552151 3.3:-62440162 MS.gene008002:CDS
ATCCAACGCTGATGCCTGCA+AGG 0.554717 3.3:-62441422 MS.gene008002:CDS
TTCCGCTTCTCATTTACAGT+AGG 0.555775 3.3:+62441346 None:intergenic
TCTTCAGATTCAGAAGAGGA+TGG 0.556076 3.3:-62441889 MS.gene008002:CDS
TGGATAAGATAAACCGGCAC+AGG 0.556571 3.3:+62439957 None:intergenic
ATAAGTATAGAAGAACTACT+TGG 0.563508 3.3:-62438639 MS.gene008002:CDS
TAAAGAGATTATGGTACTAA+CGG 0.563657 3.3:-62438917 MS.gene008002:CDS
GATGTATTGAATTTGGAGTA+CGG 0.563713 3.3:-62441691 MS.gene008002:CDS
AAGAACTACTTGGAAAGAGT+GGG 0.567137 3.3:-62438629 MS.gene008002:CDS
GCGGAAGGAAACAAGACTGT+TGG 0.570396 3.3:-62441329 MS.gene008002:CDS
TATGATGATCAAGGTTCACT+TGG 0.572239 3.3:-62442498 MS.gene008002:CDS
TGAAATTAAGCCTTATAGGT+GGG 0.572501 3.3:-62442358 MS.gene008002:CDS
CACTTGGATCAATACATCCA+TGG 0.573583 3.3:-62439167 MS.gene008002:CDS
CCTATAAGGCTTAATTTCAG+AGG 0.573942 3.3:+62442362 None:intergenic
GATTCTAAATACCGAAGGAA+AGG 0.574058 3.3:-62439501 MS.gene008002:CDS
TTTATTGATGTGTACGACAG+TGG 0.574824 3.3:-62439333 MS.gene008002:CDS
CATCAAGTATCAAGATTCCA+GGG 0.577717 3.3:+62439697 None:intergenic
GAGTACCAGTTACCCTCTTG+AGG 0.579454 3.3:-62439205 MS.gene008002:CDS
TCACAATCTAGATTACTCGT+TGG 0.580048 3.3:-62442309 MS.gene008002:CDS
ACTTAGGGAGATGGTTGAAG+AGG 0.582988 3.3:-62438530 MS.gene008002:CDS
GCTTGCGACGTTCGAAACGT+AGG 0.587148 3.3:-62442023 MS.gene008002:CDS
GAAGCACTAAATCAAGGTTG+AGG 0.587727 3.3:-62439659 MS.gene008002:CDS
ATTGTTCTGAAACAATGTGC+CGG 0.589502 3.3:+62439593 None:intergenic
TGATACCAAGAAAGAATCCA+GGG 0.590473 3.3:-62440871 MS.gene008002:CDS
TTGAACCTGGAGAGGTTCGA+CGG 0.591619 3.3:+62439931 None:intergenic
CTGATGATTTGGATGCCTTG+TGG 0.592293 3.3:-62441255 MS.gene008002:CDS
AGCCTACTGTAAATGAGAAG+CGG 0.593553 3.3:-62441348 MS.gene008002:CDS
TAGCCCATGACAAGAACACT+AGG 0.596138 3.3:+62439801 None:intergenic
CTGAAATTAAGCCTTATAGG+TGG 0.602209 3.3:-62442359 MS.gene008002:CDS
CTTATCTTCTTCCATCGACC+CGG 0.602308 3.3:+62438657 None:intergenic
TTACGATAATTAGCATCGAA+TGG 0.605659 3.3:+62444259 None:intergenic
GAAAGAACGTCATTTGCTTG+AGG 0.606173 3.3:-62439463 MS.gene008002:CDS
TCTAAATACCGAAGGAAAGG+CGG 0.606320 3.3:-62439498 MS.gene008002:CDS
AAAGCATTGAGAGAAAGCCC+TGG 0.610887 3.3:-62439714 MS.gene008002:CDS
ATTCGCACACAGAAAATACA+TGG 0.611483 3.3:-62439739 MS.gene008002:CDS
AATGTATAGATTTGTAAACC+AGG 0.619375 3.3:+62439291 None:intergenic
TTAAGAATCTCACAGGTGCA+AGG 0.619647 3.3:+62438977 None:intergenic
TGTATTCATTTCTTCCCACA+AGG 0.620617 3.3:+62441240 None:intergenic
CGTCGAACTTGAACCTGGAG+AGG 0.620998 3.3:+62439923 None:intergenic
GAATTGAGAATATTACTCTC+CGG 0.621894 3.3:-62439612 MS.gene008002:CDS
GAGGAAGAGACTTCATGTTG+TGG 0.623646 3.3:-62441578 MS.gene008002:CDS
TACTGTAAATGAGAAGCGGA+AGG 0.625752 3.3:-62441344 MS.gene008002:CDS
GGAATCTACTGCCTTCGATG+TGG 0.627188 3.3:-62440810 MS.gene008002:CDS
TTTGAGCCTAATCTCACGAG+TGG 0.632989 3.3:-62439034 MS.gene008002:CDS
TCAAGGTTCACTTGGTACAG+AGG 0.634309 3.3:-62442490 MS.gene008002:CDS
AGTTAGATTCTAAATACCGA+AGG 0.636709 3.3:-62439506 MS.gene008002:CDS
AGTATCGAAAAGCAATGATG+AGG 0.640512 3.3:-62441287 MS.gene008002:CDS
AAGCTATTAATGTGAGCACA+AGG 0.641563 3.3:-62441825 MS.gene008002:CDS
GTCTTCGCAAGATACAGAAG+TGG 0.643128 3.3:-62439833 MS.gene008002:CDS
ATAGCAGGGTTCAACTGCTG+AGG 0.645924 3.3:-62440901 MS.gene008002:intron
AATTAACTCAGATATTGATG+AGG 0.647649 3.3:-62439400 MS.gene008002:CDS
AAATTTGAAGATCAAAGCAG+CGG 0.654526 3.3:-62438856 MS.gene008002:CDS
ATTGATGAGGAGAAGATGCA+GGG 0.655538 3.3:-62439387 MS.gene008002:CDS
TGTATCAGTTACTGACGACC+GGG 0.657785 3.3:-62438675 MS.gene008002:CDS
GAATGGATCATGGCAACCTG+TGG 0.660516 3.3:-62443371 MS.gene008002:CDS
TCAAAAGCTCAACCTCAAGA+GGG 0.663408 3.3:+62439193 None:intergenic
TCAGATTCAGAAGAGGATGG+TGG 0.664458 3.3:-62441886 MS.gene008002:CDS
TTATCTTCTTGATGGAACCA+CGG 0.667967 3.3:-62441203 MS.gene008002:intron
GATAGGTGGAATGCCCAAAG+AGG 0.668768 3.3:-62440409 MS.gene008002:intron
ATGCCCAAAGAGGTACAAAG+AGG 0.679372 3.3:-62440399 MS.gene008002:CDS
GAACATTGATCGGATTTGTG+AGG 0.698234 3.3:+62442543 None:intergenic
GAAGAACCAGATCATAAAGG+CGG 0.698425 3.3:-62441451 MS.gene008002:CDS
AGCCCATGACAAGAACACTA+GGG 0.709112 3.3:+62439802 None:intergenic
GTACAGCCTGAACGTTACGT+AGG 0.720601 3.3:-62441997 MS.gene008002:CDS
AGATTGTACAGAAACTACAG+AGG 0.767273 3.3:-62439239 MS.gene008002:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAATATCAAGAA+AGG + chr3.3:62439936-62439955 None:intergenic 10.0%
!! AATTTCTTGATAAAAAAAAA+GGG - chr3.3:62439703-62439722 MS.gene008002:CDS 10.0%
!! CATATATAGTAATAAAATTA+AGG + chr3.3:62438553-62438572 None:intergenic 10.0%
!! CTTAATTTATATATAATGAT+AGG - chr3.3:62442346-62442365 MS.gene008002:CDS 10.0%
!! TAATTTCTTGATAAAAAAAA+AGG - chr3.3:62439702-62439721 MS.gene008002:CDS 10.0%
!! TATATAGTAATAAAATTAAG+GGG + chr3.3:62438551-62438570 None:intergenic 10.0%
!! TATATATAAATTAAGTTATC+AGG + chr3.3:62442341-62442360 None:intergenic 10.0%
!!! AATTAATACATTTTAATTAC+AGG - chr3.3:62439226-62439245 MS.gene008002:CDS 10.0%
!! AAAATATGAAAAATCATCAA+TGG - chr3.3:62438599-62438618 MS.gene008002:CDS 15.0%
!! AATTTATATATAATGATAGG+TGG - chr3.3:62442349-62442368 MS.gene008002:CDS 15.0%
!! ATTAGTCAAATAATGATATT+TGG + chr3.3:62441031-62441050 None:intergenic 15.0%
!!! AATTACATCTTTTTTAAAGA+AGG - chr3.3:62440516-62440535 MS.gene008002:intron 15.0%
!!! AGTTTTTCTAAGAAAAATTA+AGG + chr3.3:62439093-62439112 None:intergenic 15.0%
!!! TTTTATATTTGACTTACAAA+TGG + chr3.3:62442022-62442041 None:intergenic 15.0%
!! AAGGAAAAATAACAAAAATG+TGG + chr3.3:62438998-62439017 None:intergenic 20.0%
!! AATAAAAAGTTTGAACTTAC+TGG + chr3.3:62439630-62439649 None:intergenic 20.0%
!! ACAAAATATCTAACCAAATA+AGG + chr3.3:62442292-62442311 None:intergenic 20.0%
!! AGGAAAAATAACAAAAATGT+GGG + chr3.3:62438997-62439016 None:intergenic 20.0%
!! ATTGATATATCTATGCTATT+AGG - chr3.3:62439564-62439583 MS.gene008002:CDS 20.0%
!! TATACAATAAGTATCAAGAT+TGG + chr3.3:62439118-62439137 None:intergenic 20.0%
!! TATTTAAAGAGAAGATAAAG+AGG - chr3.3:62441175-62441194 MS.gene008002:intron 20.0%
!!! AAAAAGCTTTTGAATTTCTT+TGG - chr3.3:62442573-62442592 MS.gene008002:CDS 20.0%
!!! GATGTATTTTATGATTATGA+TGG - chr3.3:62440682-62440701 MS.gene008002:intron 20.0%
!!! TATTTGAGAAATATTTTCAG+TGG - chr3.3:62443824-62443843 MS.gene008002:intron 20.0%
!!! TGTAAAAAGTTTAAAACTGT+CGG - chr3.3:62441658-62441677 MS.gene008002:CDS 20.0%
!!! TGTTTTTGTCTTCTTTTATA+AGG - chr3.3:62441825-62441844 MS.gene008002:CDS 20.0%
!!! TTATAATCTTCATCAACTTT+TGG + chr3.3:62442440-62442459 None:intergenic 20.0%
!!! TTGTTATTTTTCCTTTTACT+TGG - chr3.3:62439003-62439022 MS.gene008002:CDS 20.0%
!!! TTTTAAACTTTTTACACCAA+CGG + chr3.3:62441654-62441673 None:intergenic 20.0%
! AAAAATATCAAGAAAGGTCA+CGG + chr3.3:62439930-62439949 None:intergenic 25.0%
! AAAAATCATCTCCAAGTAAA+AGG + chr3.3:62439017-62439036 None:intergenic 25.0%
! AAATTGACATGAACATTGAT+CGG + chr3.3:62440242-62440261 None:intergenic 25.0%
! AACTTCATTTCTTAGTAAAC+TGG - chr3.3:62439651-62439670 MS.gene008002:CDS 25.0%
! AAGAAAAGAAATGATGAGAA+AGG + chr3.3:62442696-62442715 None:intergenic 25.0%
! AAGATTGTGTATCAAGTTAT+GGG - chr3.3:62440568-62440587 MS.gene008002:intron 25.0%
! AATGATGTGACAATTATGAT+TGG - chr3.3:62441743-62441762 MS.gene008002:CDS 25.0%
! AATGTATAGATTTGTAAACC+AGG + chr3.3:62443484-62443503 None:intergenic 25.0%
! AATTAACTCAGATATTGATG+AGG - chr3.3:62443372-62443391 MS.gene008002:CDS 25.0%
! ACAAGGAACAAAAATTATGA+TGG - chr3.3:62440964-62440983 MS.gene008002:intron 25.0%
! ACATCAAATTGAGAAACAAT+AGG + chr3.3:62440667-62440686 None:intergenic 25.0%
! ACATTGTTTCAGAACAATTT+CGG - chr3.3:62443184-62443203 MS.gene008002:CDS 25.0%
! AGAACTTCATGAACAAATTT+CGG + chr3.3:62443241-62443260 None:intergenic 25.0%
! AGATTGAAGATGATATACTT+AGG - chr3.3:62444226-62444245 MS.gene008002:intron 25.0%
! AGTAATATTCTCAATTCTGT+TGG + chr3.3:62443157-62443176 None:intergenic 25.0%
! ATAAGTATAGAAGAACTACT+TGG - chr3.3:62444133-62444152 MS.gene008002:intron 25.0%
! ATATAAGTTGTTCTCTTGTA+GGG + chr3.3:62440844-62440863 None:intergenic 25.0%
! CAAATGTGATTTATTTCAAG+TGG + chr3.3:62440099-62440118 None:intergenic 25.0%
! CATGATTATGAAGAATGAAA+AGG - chr3.3:62444284-62444303 MS.gene008002:CDS 25.0%
! GAAAATCCAAGTTCAAATTA+TGG + chr3.3:62440048-62440067 None:intergenic 25.0%
! GATTGAAGATGATATACTTA+GGG - chr3.3:62444227-62444246 MS.gene008002:intron 25.0%
! GGTAAAAACTCTTAATAAAG+AGG - chr3.3:62440303-62440322 MS.gene008002:CDS 25.0%
! GTTAACTTATATGATGATCA+AGG - chr3.3:62440265-62440284 MS.gene008002:CDS 25.0%
! TAAAGAGATTATGGTACTAA+CGG - chr3.3:62443855-62443874 MS.gene008002:intron 25.0%
! TAATGATATCGACAATGTTT+GGG - chr3.3:62442508-62442527 MS.gene008002:CDS 25.0%
! TGATTTAGTTAAACGTTTGT+TGG - chr3.3:62438944-62438963 MS.gene008002:CDS 25.0%
! TGTACACTTGATAAATTTGT+TGG - chr3.3:62438788-62438807 MS.gene008002:CDS 25.0%
! TTAACTGTATTCTCCTTATT+TGG - chr3.3:62442276-62442295 MS.gene008002:CDS 25.0%
! TTAATCTAACAATCTATAGC+CGG + chr3.3:62438714-62438733 None:intergenic 25.0%
! TTTAGATTGGATGAAGAAAT+TGG - chr3.3:62441941-62441960 MS.gene008002:CDS 25.0%
!! AAATATTTTCAGTGGCAAAA+TGG - chr3.3:62443832-62443851 MS.gene008002:intron 25.0%
!! AACAAAAATTATGATGGTGA+TGG - chr3.3:62440970-62440989 MS.gene008002:intron 25.0%
!! ATAAACCATGATTTTGAATG+TGG - chr3.3:62439166-62439185 MS.gene008002:CDS 25.0%
!! ATATGGATTTTCAAACCAAA+TGG - chr3.3:62441220-62441239 MS.gene008002:CDS 25.0%
!! TATGGATTTTCAAACCAAAT+GGG - chr3.3:62441221-62441240 MS.gene008002:CDS 25.0%
!! TTGTGAACATGATTTTAGAT+TGG - chr3.3:62441928-62441947 MS.gene008002:CDS 25.0%
!! TTTAAAGTCACACATACAAT+TGG + chr3.3:62441694-62441713 None:intergenic 25.0%
!!! AGCAAATTTGATTTGAGAAA+AGG - chr3.3:62443697-62443716 MS.gene008002:intron 25.0%
!!! AGCTTTGTTAATTCACAATT+TGG + chr3.3:62438830-62438849 None:intergenic 25.0%
!!! CTGTTTTGAAACAAGAATTA+GGG + chr3.3:62439365-62439384 None:intergenic 25.0%
!!! GAAATTCAAAAGCTTTTTTC+TGG + chr3.3:62442571-62442590 None:intergenic 25.0%
!!! TGTTTTGAAACAAGAATTAG+GGG + chr3.3:62439364-62439383 None:intergenic 25.0%
AAAATATCAAGAAAGGTCAC+GGG + chr3.3:62439929-62439948 None:intergenic 30.0%
AAACTGACATTATTAGTCCT+TGG - chr3.3:62440596-62440615 MS.gene008002:intron 30.0%
AAAGAGATAAATATCAAGCC+AGG + chr3.3:62440159-62440178 None:intergenic 30.0%
AAAGAGATTATGGTACTAAC+GGG - chr3.3:62443856-62443875 MS.gene008002:intron 30.0%
AAATTTGAAGATCAAAGCAG+CGG - chr3.3:62443916-62443935 MS.gene008002:intron 30.0%
AACTCTATTAAGAATCTCAC+AGG + chr3.3:62443805-62443824 None:intergenic 30.0%
AAGTATTATGTTGAAGCCTT+TGG + chr3.3:62440363-62440382 None:intergenic 30.0%
AATCGTGAATCACGAAAAAT+AGG + chr3.3:62442235-62442254 None:intergenic 30.0%
ACAACATATCCAACAAAATG+AGG + chr3.3:62442076-62442095 None:intergenic 30.0%
ACATCAAGTTATCTTCTTGA+TGG - chr3.3:62441561-62441580 MS.gene008002:CDS 30.0%
ACTATCTATTATTTCCTTGC+AGG + chr3.3:62441367-62441386 None:intergenic 30.0%
AGCATAGATATATCAATTCC+AGG + chr3.3:62439561-62439580 None:intergenic 30.0%
AGTTAGATTCTAAATACCGA+AGG - chr3.3:62443266-62443285 MS.gene008002:CDS 30.0%
ATTTCTTGTGCAAAGAAGAA+TGG - chr3.3:62441054-62441073 MS.gene008002:intron 30.0%
CAACATATCCAACAAAATGA+GGG + chr3.3:62442075-62442094 None:intergenic 30.0%
CAAGATTGTGTATCAAGTTA+TGG - chr3.3:62440567-62440586 MS.gene008002:intron 30.0%
CATATAAGTTGTTCTCTTGT+AGG + chr3.3:62440845-62440864 None:intergenic 30.0%
CTAATGATATCGACAATGTT+TGG - chr3.3:62442507-62442526 MS.gene008002:CDS 30.0%
CTCTTTGTAAAATGTAGATG+TGG - chr3.3:62440173-62440192 MS.gene008002:CDS 30.0%
CTTCAACATAATACTTGTGA+AGG - chr3.3:62440367-62440386 MS.gene008002:CDS 30.0%
GAACTCTTAAAAATAGAGTC+AGG - chr3.3:62439423-62439442 MS.gene008002:CDS 30.0%
GAATTGAGAATATTACTCTC+CGG - chr3.3:62443160-62443179 MS.gene008002:intron 30.0%
GAGTGATCAAAAGGTTAATA+AGG - chr3.3:62440912-62440931 MS.gene008002:intron 30.0%
GATTCAGTTCAAATATAGCA+GGG - chr3.3:62441857-62441876 MS.gene008002:CDS 30.0%
GCAAAATGGTAAAGAGATTA+TGG - chr3.3:62443846-62443865 MS.gene008002:intron 30.0%
GCTCAAAACAAATCTTACTT+TGG + chr3.3:62443725-62443744 None:intergenic 30.0%
TACAAAATGCTGTCAAATAG+CGG - chr3.3:62442174-62442193 MS.gene008002:CDS 30.0%
TCAAGTGGTTAATTCAGTTA+AGG + chr3.3:62440084-62440103 None:intergenic 30.0%
TCATCACTTGATATTGTTGT+AGG + chr3.3:62441114-62441133 None:intergenic 30.0%
TGATTCAGTTCAAATATAGC+AGG - chr3.3:62441856-62441875 MS.gene008002:CDS 30.0%
TGTGAACTTCAGCTTAAAAA+AGG - chr3.3:62440630-62440649 MS.gene008002:intron 30.0%
TTCACAACATTTATAAGCCA+AGG + chr3.3:62440616-62440635 None:intergenic 30.0%
TTCAGTATCAATGAAACGTA+AGG + chr3.3:62439457-62439476 None:intergenic 30.0%
TTCTAGCCATAATTTGAACT+TGG - chr3.3:62440039-62440058 MS.gene008002:CDS 30.0%
TTGTCGATATCATTAGTCAA+TGG + chr3.3:62442503-62442522 None:intergenic 30.0%
! AATTTTCATCTGATCTTTCG+TGG - chr3.3:62440488-62440507 MS.gene008002:intron 30.0%
! AGTTACTTGAAGTTATTTCC+AGG - chr3.3:62442719-62442738 MS.gene008002:intron 30.0%
! ATCAAATTTTCATCCTCCAA+AGG - chr3.3:62440344-62440363 MS.gene008002:CDS 30.0%
! ATCATTTGTTGCATTCATCA+TGG + chr3.3:62438670-62438689 None:intergenic 30.0%
! ATTTTCAAACCAAATGGGAA+GGG - chr3.3:62441226-62441245 MS.gene008002:CDS 30.0%
! CTCGAATGAAAATTTTCTGT+TGG + chr3.3:62441273-62441292 None:intergenic 30.0%
! GATGTATTGAATTTGGAGTA+CGG - chr3.3:62441081-62441100 MS.gene008002:intron 30.0%
! GTTACTTGAAGTTATTTCCA+GGG - chr3.3:62442720-62442739 MS.gene008002:intron 30.0%
! TAGTGATGTCAAACATGTTT+TGG - chr3.3:62442913-62442932 MS.gene008002:intron 30.0%
! TGAAATTAAGCCTTATAGGT+GGG - chr3.3:62440414-62440433 MS.gene008002:intron 30.0%
! TGATGCAAATGCCTTTTTAT+GGG + chr3.3:62438483-62438502 None:intergenic 30.0%
! TGTTTTGCACAGATCTTATA+TGG + chr3.3:62440549-62440568 None:intergenic 30.0%
! TTACGATAATTAGCATCGAA+TGG + chr3.3:62438516-62438535 None:intergenic 30.0%
! TTGATGCAAATGCCTTTTTA+TGG + chr3.3:62438484-62438503 None:intergenic 30.0%
!! ATTTTAGTCCCTCATTTTGT+TGG - chr3.3:62442064-62442083 MS.gene008002:CDS 30.0%
!! CGACTATTTATTTTCTGTTG+TGG - chr3.3:62439254-62439273 MS.gene008002:CDS 30.0%
!! TAAAAAGGCATTTGCATCAA+TGG - chr3.3:62438484-62438503 MS.gene008002:CDS 30.0%
!! TGGTGTTGATGTATTGAATT+TGG - chr3.3:62441074-62441093 MS.gene008002:intron 30.0%
!!! ATAGCTTGCTTTGTTTTTGA+AGG + chr3.3:62444036-62444055 None:intergenic 30.0%
!!! ATGTGCAACTAAGTTTTTTG+CGG - chr3.3:62443648-62443667 MS.gene008002:intron 30.0%
!!! GCTGTTTTGAAACAAGAATT+AGG + chr3.3:62439366-62439385 None:intergenic 30.0%
!!! GTTTATTTTTGTTACACCGT+TGG - chr3.3:62441635-62441654 MS.gene008002:CDS 30.0%
!!! TCTATTTTTAAGAGTTCCAC+AGG + chr3.3:62439420-62439439 None:intergenic 30.0%
!!! TTCTTGCATGATTTTTAGTG+AGG - chr3.3:62444167-62444186 MS.gene008002:intron 30.0%
AACAAGACTGTTGGAGAAAA+AGG - chr3.3:62441452-62441471 MS.gene008002:CDS 35.0%
AACCTTGATTTAGTGCTTCT+AGG + chr3.3:62443112-62443131 None:intergenic 35.0%
AAGAACTACTTGGAAAGAGT+GGG - chr3.3:62444143-62444162 MS.gene008002:intron 35.0%
AAGCTATTAATGTGAGCACA+AGG - chr3.3:62440947-62440966 MS.gene008002:intron 35.0%
ACAGAAACTACAGAGGAAAA+TGG - chr3.3:62443540-62443559 MS.gene008002:intron 35.0%
ACAGTGCAGTGAAGAAAATA+AGG - chr3.3:62442400-62442419 MS.gene008002:CDS 35.0%
ACATGTTTGACATCACTAGA+AGG + chr3.3:62442911-62442930 None:intergenic 35.0%
ACGAGTGGTGAAAAATGAAA+AGG - chr3.3:62443753-62443772 MS.gene008002:intron 35.0%
ACTTCATGTTGTGGATGATA+TGG - chr3.3:62441203-62441222 MS.gene008002:intron 35.0%
AGACATAAACCAAACCTAGA+AGG + chr3.3:62438974-62438993 None:intergenic 35.0%
AGATGATATACTTAGGGAGA+TGG - chr3.3:62444233-62444252 MS.gene008002:intron 35.0%
AGATTGTACAGAAACTACAG+AGG - chr3.3:62443533-62443552 MS.gene008002:intron 35.0%
ATTCGCACACAGAAAATACA+TGG - chr3.3:62443033-62443052 MS.gene008002:intron 35.0%
CACAATCTAGATTACTCGTT+GGG - chr3.3:62440464-62440483 MS.gene008002:intron 35.0%
CAGATATTCGGATAAGATCA+AGG - chr3.3:62439499-62439518 MS.gene008002:CDS 35.0%
CATCAAGTATCAAGATTCCA+GGG + chr3.3:62443078-62443097 None:intergenic 35.0%
CATGAAGAACCAGATCATAA+AGG - chr3.3:62441318-62441337 MS.gene008002:CDS 35.0%
CCAAAATCAATGATTCTTCC+TGG - chr3.3:62442875-62442894 MS.gene008002:intron 35.0%
CCTATAAGGCTTAATTTCAG+AGG + chr3.3:62440413-62440432 None:intergenic 35.0%
CTTACTGGAATAGACGTAAA+TGG + chr3.3:62439615-62439634 None:intergenic 35.0%
GAAAAATCCAACTCAAGTAG+TGG - chr3.3:62442635-62442654 MS.gene008002:intron 35.0%
GACATAAACCAAACCTAGAA+GGG + chr3.3:62438973-62438992 None:intergenic 35.0%
GATAAAAAAAAAGGGCAACC+CGG - chr3.3:62439711-62439730 MS.gene008002:CDS 35.0%
GATTCTAAATACCGAAGGAA+AGG - chr3.3:62443271-62443290 MS.gene008002:CDS 35.0%
GCACTTTGTCATCAGATATT+CGG - chr3.3:62439487-62439506 MS.gene008002:CDS 35.0%
GCTTATAAAGTTAGCTGCAA+AGG - chr3.3:62438751-62438770 MS.gene008002:CDS 35.0%
GGAAGAATATCCTGATGATT+TGG - chr3.3:62441506-62441525 MS.gene008002:CDS 35.0%
GGAATCTTGATACTTGATGA+AGG - chr3.3:62443079-62443098 MS.gene008002:intron 35.0%
GGCGAAAAGAGTTCAAAAAA+TGG - chr3.3:62442786-62442805 MS.gene008002:intron 35.0%
GTCGTACACATCAATAAAAC+CGG + chr3.3:62443437-62443456 None:intergenic 35.0%
GTTATCAGGTAGATTCATAC+TGG + chr3.3:62442327-62442346 None:intergenic 35.0%
TAAATATCAAGCCAGGTGTT+TGG + chr3.3:62440152-62440171 None:intergenic 35.0%
TACAATCTCATGCTGTTCAT+CGG + chr3.3:62443521-62443540 None:intergenic 35.0%
TATGATGATCAAGGTTCACT+TGG - chr3.3:62440274-62440293 MS.gene008002:CDS 35.0%
TATTATGTTGAAGCCTTTGG+AGG + chr3.3:62440360-62440379 None:intergenic 35.0%
TCAAGTGATGAAGAAGTTGA+TGG - chr3.3:62441123-62441142 MS.gene008002:intron 35.0%
TCACAATCTAGATTACTCGT+TGG - chr3.3:62440463-62440482 MS.gene008002:intron 35.0%
TCATCAAGTATCAAGATTCC+AGG + chr3.3:62443079-62443098 None:intergenic 35.0%
TCATTAGTCAATGGTTCATC+AGG + chr3.3:62442494-62442513 None:intergenic 35.0%
TGATACCAAGAAAGAATCCA+GGG - chr3.3:62441901-62441920 MS.gene008002:CDS 35.0%
TGTATTCATTTCTTCCCACA+AGG + chr3.3:62441535-62441554 None:intergenic 35.0%
TTATCTTCTTGATGGAACCA+CGG - chr3.3:62441569-62441588 MS.gene008002:CDS 35.0%
TTGTGGAAGATCCTTCTAAA+TGG - chr3.3:62444193-62444212 MS.gene008002:intron 35.0%
TTTATTGATGTGTACGACAG+TGG - chr3.3:62443439-62443458 MS.gene008002:intron 35.0%
TTTCTTTGGCATAACATTGC+TGG - chr3.3:62442587-62442606 MS.gene008002:intron 35.0%
! AAGCAGTATTGAATGGATCA+TGG - chr3.3:62439391-62439410 MS.gene008002:CDS 35.0%
! ACACATAAACCATTTTCTGC+TGG + chr3.3:62444080-62444099 None:intergenic 35.0%
! AGCTAGACTTGTTTGAAAGA+GGG - chr3.3:62443881-62443900 MS.gene008002:intron 35.0%
! AGTATCGAAAAGCAATGATG+AGG - chr3.3:62441485-62441504 MS.gene008002:CDS 35.0%
! CTGAAATTAAGCCTTATAGG+TGG - chr3.3:62440413-62440432 MS.gene008002:intron 35.0%
! GATTTTCAAACCAAATGGGA+AGG - chr3.3:62441225-62441244 MS.gene008002:CDS 35.0%
! GATTTTTCTTCCATGAGTGA+TGG + chr3.3:62442623-62442642 None:intergenic 35.0%
! GCATTTGAAGCAGTATTGAA+TGG - chr3.3:62439384-62439403 MS.gene008002:CDS 35.0%
! TTTTCACAAATCCACATCGA+AGG + chr3.3:62441976-62441995 None:intergenic 35.0%
!! ATCCTAGAAGCACTAAATCA+AGG - chr3.3:62443107-62443126 MS.gene008002:intron 35.0%
!! ATTGTTCTGAAACAATGTGC+CGG + chr3.3:62443182-62443201 None:intergenic 35.0%
!! CCTCTGAAATTAAGCCTTAT+AGG - chr3.3:62440410-62440429 MS.gene008002:intron 35.0%
!! GTTGAGCTTTTGATAACACT+TGG - chr3.3:62443589-62443608 MS.gene008002:intron 35.0%
!! TGCATCTTTTCTTCAAGTTC+AGG + chr3.3:62442542-62442561 None:intergenic 35.0%
!!! AGCTTCTAGAGTGATTTTTC+TGG - chr3.3:62443996-62444015 MS.gene008002:intron 35.0%
!!! CCAGGAAGAATCATTGATTT+TGG + chr3.3:62442878-62442897 None:intergenic 35.0%
!!! GATTTTTAGTGAGGAGTTTG+TGG - chr3.3:62444176-62444195 MS.gene008002:intron 35.0%
AAAAATTGTCACACACACCG+TGG + chr3.3:62441589-62441608 None:intergenic 40.0%
AAAATGGAAGATTCCTGTGC+CGG - chr3.3:62442802-62442821 MS.gene008002:intron 40.0%
AACAGCCTCTTGTGTAAAAC+AGG + chr3.3:62439841-62439860 None:intergenic 40.0%
AAGCCATCACATGAAGTTGA+AGG - chr3.3:62440727-62440746 MS.gene008002:intron 40.0%
AAGCCTTCAACTTCATGTGA+TGG + chr3.3:62440733-62440752 None:intergenic 40.0%
AATTCCAGGTCGTAAAAAGC+TGG + chr3.3:62439547-62439566 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAACA+GGG + chr3.3:62439840-62439859 None:intergenic 40.0%
ACTATCCCTGGATTCTTTCT+TGG + chr3.3:62441909-62441928 None:intergenic 40.0%
AGACTTGAATCCTCTTCAAC+CGG - chr3.3:62438692-62438711 MS.gene008002:CDS 40.0%
AGCCTACTGTAAATGAGAAG+CGG - chr3.3:62441424-62441443 MS.gene008002:CDS 40.0%
AGTCTACAGAGTCTTTACAC+TGG - chr3.3:62441771-62441790 MS.gene008002:CDS 40.0%
ATCAAAAGCTCAACCTCAAG+AGG + chr3.3:62443583-62443602 None:intergenic 40.0%
ATCATGTTCACAACTATCCC+TGG + chr3.3:62441921-62441940 None:intergenic 40.0%
ATTGATGAGGAGAAGATGCA+GGG - chr3.3:62443385-62443404 MS.gene008002:CDS 40.0%
CACTTGGATCAATACATCCA+TGG - chr3.3:62443605-62443624 MS.gene008002:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr3.3:62439777-62439796 None:intergenic 40.0%
CTCAGAAATGTCACGTATTG+CGG + chr3.3:62441999-62442018 None:intergenic 40.0%
CTCTTCTTCAGATTCAGAAG+AGG - chr3.3:62440879-62440898 MS.gene008002:CDS 40.0%
CTCTTGTGTAAAACAGGGTA+AGG + chr3.3:62439835-62439854 None:intergenic 40.0%
CTGATACCAAGAAAGAATCC+AGG - chr3.3:62441900-62441919 MS.gene008002:CDS 40.0%
GAAAGAACGTCATTTGCTTG+AGG - chr3.3:62443309-62443328 MS.gene008002:CDS 40.0%
GAAATGTATCCCTTCCCATT+TGG + chr3.3:62441238-62441257 None:intergenic 40.0%
GAACATTGATCGGATTTGTG+AGG + chr3.3:62440232-62440251 None:intergenic 40.0%
GAAGAACCAGATCATAAAGG+CGG - chr3.3:62441321-62441340 MS.gene008002:CDS 40.0%
GAAGAACTACTTGGAAAGAG+TGG - chr3.3:62444142-62444161 MS.gene008002:intron 40.0%
GCATGCCACATTCAAAATCA+TGG + chr3.3:62439174-62439193 None:intergenic 40.0%
GTTGTTGAGAAGTTGGAAGT+TGG - chr3.3:62440802-62440821 MS.gene008002:CDS 40.0%
GTTGTTGTCATGTGACTGAA+AGG + chr3.3:62439884-62439903 None:intergenic 40.0%
TACTGTAAATGAGAAGCGGA+AGG - chr3.3:62441428-62441447 MS.gene008002:CDS 40.0%
TATTGATGAGGAGAAGATGC+AGG - chr3.3:62443384-62443403 MS.gene008002:CDS 40.0%
TCAAAAGCTCAACCTCAAGA+GGG + chr3.3:62443582-62443601 None:intergenic 40.0%
TCAACTTCATGTGATGGCTT+TGG + chr3.3:62440727-62440746 None:intergenic 40.0%
TCAATCAATGCTTGTGCTGA+AGG - chr3.3:62443958-62443977 MS.gene008002:intron 40.0%
TCTAAATACCGAAGGAAAGG+CGG - chr3.3:62443274-62443293 MS.gene008002:CDS 40.0%
TCTCCTCTTTGTACCTCTTT+GGG + chr3.3:62442379-62442398 None:intergenic 40.0%
TCTGATGAATCCCACCTATA+AGG + chr3.3:62440427-62440446 None:intergenic 40.0%
TCTTCAGATTCAGAAGAGGA+TGG - chr3.3:62440883-62440902 MS.gene008002:CDS 40.0%
TGGTGGTAAGAGTGATCAAA+AGG - chr3.3:62440903-62440922 MS.gene008002:intron 40.0%
TGTGTTATATCACATGCTCC+TGG - chr3.3:62442659-62442678 MS.gene008002:intron 40.0%
TTAAGAATCTCACAGGTGCA+AGG + chr3.3:62443798-62443817 None:intergenic 40.0%
TTCCCGTACAATACACCAAA+TGG + chr3.3:62439781-62439800 None:intergenic 40.0%
TTCCGCTTCTCATTTACAGT+AGG + chr3.3:62441429-62441448 None:intergenic 40.0%
TTCTCCTCTTTGTACCTCTT+TGG + chr3.3:62442380-62442399 None:intergenic 40.0%
TTGACATCACTAGAAGGTCT+TGG + chr3.3:62442905-62442924 None:intergenic 40.0%
! AGGTTGTGTTGTTGAGAAGT+TGG - chr3.3:62440795-62440814 MS.gene008002:CDS 40.0%
! CAATTTTTCCGCCTTTCCTT+CGG + chr3.3:62443285-62443304 None:intergenic 40.0%
! CTTACCCTGTTTTACACAAG+AGG - chr3.3:62439833-62439852 MS.gene008002:CDS 40.0%
! GAAGCACTAAATCAAGGTTG+AGG - chr3.3:62443113-62443132 MS.gene008002:intron 40.0%
! GAGCTAGACTTGTTTGAAAG+AGG - chr3.3:62443880-62443899 MS.gene008002:intron 40.0%
! TGATGATTTGGATGCCTTGT+GGG - chr3.3:62441518-62441537 MS.gene008002:CDS 40.0%
! TGATTTTTCTGGACTCTGAG+TGG - chr3.3:62444007-62444026 MS.gene008002:intron 40.0%
! TGCTCTAACTAGTTTCTGCA+AGG + chr3.3:62439280-62439299 None:intergenic 40.0%
! TTCTCTGCTTGCCATTTAGA+AGG + chr3.3:62444207-62444226 None:intergenic 40.0%
! TTTGGTGTATTGTACGGGAA+GGG - chr3.3:62439781-62439800 MS.gene008002:CDS 40.0%
! TTTTCACCACTCGTGAGATT+AGG + chr3.3:62443747-62443766 None:intergenic 40.0%
!! AATTCTTCTGAGACTCTTCC+TGG - chr3.3:62443463-62443482 MS.gene008002:intron 40.0%
!! ATGTTGACTTACCAAACACC+TGG - chr3.3:62440138-62440157 MS.gene008002:CDS 40.0%
!! ATTTGGTGTATTGTACGGGA+AGG - chr3.3:62439780-62439799 MS.gene008002:CDS 40.0%
!! CACCATTTGGTGTATTGTAC+GGG - chr3.3:62439776-62439795 MS.gene008002:CDS 40.0%
!! CCACCATTTGGTGTATTGTA+CGG - chr3.3:62439775-62439794 MS.gene008002:CDS 40.0%
!! TGATGGTGATGGCAAGTTTA+AGG - chr3.3:62440981-62441000 MS.gene008002:intron 40.0%
!!! TGCAACTAAGTTTTTTGCGG+AGG - chr3.3:62443651-62443670 MS.gene008002:intron 40.0%
AACACAGCCACTACTTGAGT+TGG + chr3.3:62442645-62442664 None:intergenic 45.0%
ACACAACCTACGTAACGTTC+AGG + chr3.3:62440784-62440803 None:intergenic 45.0%
ACACCCTAGTGTTCTTGTCA+TGG - chr3.3:62442967-62442986 MS.gene008002:intron 45.0%
ACAGTAGGCTCTTCTTCAGT+TGG + chr3.3:62441414-62441433 None:intergenic 45.0%
ACTAGACTTAACTTCGCTCC+TGG + chr3.3:62440010-62440029 None:intergenic 45.0%
ACTTAGGGAGATGGTTGAAG+AGG - chr3.3:62444242-62444261 MS.gene008002:intron 45.0%
AGCCCATGACAAGAACACTA+GGG + chr3.3:62442973-62442992 None:intergenic 45.0%
AGGGCTTTCTCTCAATGCTT+TGG + chr3.3:62443059-62443078 None:intergenic 45.0%
CAACTTTACTAGTTGCGCCA+AGG - chr3.3:62439900-62439919 MS.gene008002:CDS 45.0%
CAATCTATAGCCGGTTGAAG+AGG + chr3.3:62438705-62438724 None:intergenic 45.0%
CACCCTAGTGTTCTTGTCAT+GGG - chr3.3:62442968-62442987 MS.gene008002:intron 45.0%
CCAGTTCCTTACAAATCGGA+GGG + chr3.3:62439966-62439985 None:intergenic 45.0%
CCGTACAATACACCAAATGG+TGG + chr3.3:62439778-62439797 None:intergenic 45.0%
CGGCCATGGATAAGATAAAC+CGG + chr3.3:62442824-62442843 None:intergenic 45.0%
CTAGAAGGTCTTGGAAATCC+AGG + chr3.3:62442896-62442915 None:intergenic 45.0%
CTAGACTTAACTTCGCTCCT+GGG + chr3.3:62440009-62440028 None:intergenic 45.0%
CTCTATGGAACCATCACTCA+TGG - chr3.3:62442610-62442629 MS.gene008002:intron 45.0%
CTTATCTTCTTCCATCGACC+CGG + chr3.3:62444118-62444137 None:intergenic 45.0%
GAGGAAGAGACTTCATGTTG+TGG - chr3.3:62441194-62441213 MS.gene008002:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr3.3:62439810-62439829 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr3.3:62439813-62439832 None:intergenic 45.0%
GTCATGTGACTGAAAGGTCA+CGG + chr3.3:62439878-62439897 None:intergenic 45.0%
GTCTTCGCAAGATACAGAAG+TGG - chr3.3:62442939-62442958 MS.gene008002:intron 45.0%
GTGCTGCGAAAAATCACTTC+CGG - chr3.3:62443415-62443434 MS.gene008002:intron 45.0%
GTGTATCAGTTACTGACGAC+CGG - chr3.3:62444096-62444115 MS.gene008002:intron 45.0%
GTTCTACCGCCTTTATGATC+TGG + chr3.3:62441330-62441349 None:intergenic 45.0%
TAGCCCATGACAAGAACACT+AGG + chr3.3:62442974-62442993 None:intergenic 45.0%
TCAAGGTTCACTTGGTACAG+AGG - chr3.3:62440282-62440301 MS.gene008002:CDS 45.0%
TCAGATTCAGAAGAGGATGG+TGG - chr3.3:62440886-62440905 MS.gene008002:CDS 45.0%
TCATGTGACTGAAAGGTCAC+GGG + chr3.3:62439877-62439896 None:intergenic 45.0%
TGGATAAGATAAACCGGCAC+AGG + chr3.3:62442818-62442837 None:intergenic 45.0%
TGTATCAGTTACTGACGACC+GGG - chr3.3:62444097-62444116 MS.gene008002:intron 45.0%
TTGGTGTATTGTACGGGAAG+GGG - chr3.3:62439782-62439801 MS.gene008002:CDS 45.0%
TTTGAGCCTAATCTCACGAG+TGG - chr3.3:62443738-62443757 MS.gene008002:intron 45.0%
! AGAAAGGTTTTTCCTGCTCC+AGG + chr3.3:62442680-62442699 None:intergenic 45.0%
! ATGCCCAAAGAGGTACAAAG+AGG - chr3.3:62442373-62442392 MS.gene008002:CDS 45.0%
! CACAAGGCATCCAAATCATC+AGG + chr3.3:62441519-62441538 None:intergenic 45.0%
! CTGATGATTTGGATGCCTTG+TGG - chr3.3:62441517-62441536 MS.gene008002:CDS 45.0%
! GTTGGTTTCCCTTCTAGGTT+TGG - chr3.3:62438962-62438981 MS.gene008002:CDS 45.0%
! TAAACCATTTTCTGCTGGCC+CGG + chr3.3:62444075-62444094 None:intergenic 45.0%
! TCTGAACCCTCCGATTTGTA+AGG - chr3.3:62439957-62439976 MS.gene008002:CDS 45.0%
!! AAAGCATTGAGAGAAAGCCC+TGG - chr3.3:62443058-62443077 MS.gene008002:intron 45.0%
!! ACTTCATGTGATGGCTTTGG+TGG + chr3.3:62440724-62440743 None:intergenic 45.0%
!! CGTTTGTTGGTTTCCCTTCT+AGG - chr3.3:62438957-62438976 MS.gene008002:CDS 45.0%
!! GCATAACATTGCTGGCTCTA+TGG - chr3.3:62442595-62442614 MS.gene008002:intron 45.0%
!! GTGCCGGTTTATCTTATCCA+TGG - chr3.3:62442818-62442837 MS.gene008002:intron 45.0%
!!! GTTTTTGGAGCTAGGACTAG+AGG + chr3.3:62442752-62442771 None:intergenic 45.0%
!! ATATATAGTAATAAAATTAA+GGG + chr3.3:62438552-62438571 None:intergenic 5.0%
AAGGTCACGGGTTCAAGTCT+TGG + chr3.3:62439865-62439884 None:intergenic 50.0%
AGAAAGGTCACGGGTAACCT+TGG + chr3.3:62439920-62439939 None:intergenic 50.0%
ATAGCAGGGTTCAACTGCTG+AGG - chr3.3:62441871-62441890 MS.gene008002:CDS 50.0%
ATATCACATGCTCCTGGAGC+AGG - chr3.3:62442665-62442684 MS.gene008002:intron 50.0%
CTCAACCTCAAGAGGGTAAC+TGG + chr3.3:62443575-62443594 None:intergenic 50.0%
CTGGGTGAACTCTGGATTAC+CGG + chr3.3:62439991-62440010 None:intergenic 50.0%
GAATGGATCATGGCAACCTG+TGG - chr3.3:62439401-62439420 MS.gene008002:CDS 50.0%
GAGTACCAGTTACCCTCTTG+AGG - chr3.3:62443567-62443586 MS.gene008002:intron 50.0%
GATAGGTGGAATGCCCAAAG+AGG - chr3.3:62442363-62442382 MS.gene008002:CDS 50.0%
GATTTGTAAGGAACTGGCCC+CGG - chr3.3:62439969-62439988 MS.gene008002:CDS 50.0%
GCCAGTTCCTTACAAATCGG+AGG + chr3.3:62439967-62439986 None:intergenic 50.0%
GCGGAAGGAAACAAGACTGT+TGG - chr3.3:62441443-62441462 MS.gene008002:CDS 50.0%
GGAATCTACTGCCTTCGATG+TGG - chr3.3:62441962-62441981 MS.gene008002:CDS 50.0%
GGGGCCAGTTCCTTACAAAT+CGG + chr3.3:62439970-62439989 None:intergenic 50.0%
GTACAGCCTGAACGTTACGT+AGG - chr3.3:62440775-62440794 MS.gene008002:CDS 50.0%
TGGGTGAACTCTGGATTACC+GGG + chr3.3:62439990-62440009 None:intergenic 50.0%
TTGAACCTGGAGAGGTTCGA+CGG + chr3.3:62442844-62442863 None:intergenic 50.0%
! CCCTCCGATTTGTAAGGAAC+TGG - chr3.3:62439963-62439982 MS.gene008002:CDS 50.0%
! TATTGCACGCGCTTTTCGAC+CGG - chr3.3:62444053-62444072 MS.gene008002:intron 50.0%
! TGCTCCAGCTTTTTACGACC+TGG - chr3.3:62439540-62439559 MS.gene008002:CDS 50.0%
!!! GCAGCTGTTTTGATCAGCCA+TGG + chr3.3:62443625-62443644 None:intergenic 50.0%
ACTAGAGCTCCCGCATATGC+AGG - chr3.3:62439737-62439756 MS.gene008002:CDS 55.0%
AGGACTAGAGGTCGTTTCCC+TGG + chr3.3:62442740-62442759 None:intergenic 55.0%
ATCCAACGCTGATGCCTGCA+AGG - chr3.3:62441350-62441369 MS.gene008002:CDS 55.0%
CGGTAATCCAGAGTTCACCC+AGG - chr3.3:62439989-62440008 MS.gene008002:CDS 55.0%
CGTCGAACTTGAACCTGGAG+AGG + chr3.3:62442852-62442871 None:intergenic 55.0%
CTAGAGCTCCCGCATATGCA+GGG - chr3.3:62439738-62439757 MS.gene008002:CDS 55.0%
GCTTGCGACGTTCGAAACGT+AGG - chr3.3:62440749-62440768 MS.gene008002:intron 55.0%
GGGTGAACTCTGGATTACCG+GGG + chr3.3:62439989-62440008 None:intergenic 55.0%
TTCCTTGCAGGCATCAGCGT+TGG + chr3.3:62441355-62441374 None:intergenic 55.0%
! ATTGCACGCGCTTTTCGACC+GGG - chr3.3:62444054-62444073 MS.gene008002:intron 55.0%
! GGTGTCGTCGAACTTGAACC+TGG + chr3.3:62442857-62442876 None:intergenic 55.0%
CATATGCAGGGTCCGGGAAG+GGG - chr3.3:62439750-62439769 MS.gene008002:CDS 60.0%
CTTCCCGGACCCTGCATATG+CGG + chr3.3:62439750-62439769 None:intergenic 60.0%
CTTCGCTCCTGGGTGAACTC+TGG + chr3.3:62439999-62440018 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG - chr3.3:62439749-62439768 MS.gene008002:CDS 60.0%
GTTACTGACGACCGGGTCGA+TGG - chr3.3:62444104-62444123 MS.gene008002:intron 60.0%
TCGACCGGGCCAGCAGAAAA+TGG - chr3.3:62444068-62444087 MS.gene008002:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG + chr3.3:62439749-62439768 None:intergenic 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG + chr3.3:62439733-62439752 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr3.3:62439765-62439784 None:intergenic 60.0%
CATGGCCGTCGAACCTCTCC+AGG - chr3.3:62442836-62442855 MS.gene008002:intron 65.0%
CGCATATGCAGGGTCCGGGA+AGG - chr3.3:62439748-62439767 MS.gene008002:CDS 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr3.3:62439763-62439782 MS.gene008002:CDS 65.0%
CTCCCGCATATGCAGGGTCC+GGG - chr3.3:62439744-62439763 MS.gene008002:CDS 65.0%
CTGGAGAGGTTCGACGGCCA+TGG + chr3.3:62442838-62442857 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG - chr3.3:62439743-62439762 MS.gene008002:CDS 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG + chr3.3:62439732-62439751 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 62438474 62444320 62438474 ID=MS.gene008002
chr3.3 mRNA 62438474 62444320 62438474 ID=MS.gene008002.t1;Parent=MS.gene008002
chr3.3 exon 62444263 62444320 62444263 ID=MS.gene008002.t1.exon1;Parent=MS.gene008002.t1
chr3.3 CDS 62444263 62444320 62444263 ID=cds.MS.gene008002.t1;Parent=MS.gene008002.t1
chr3.3 exon 62443165 62443409 62443165 ID=MS.gene008002.t1.exon2;Parent=MS.gene008002.t1
chr3.3 CDS 62443165 62443409 62443165 ID=cds.MS.gene008002.t1;Parent=MS.gene008002.t1
chr3.3 exon 62441204 62442604 62441204 ID=MS.gene008002.t1.exon3;Parent=MS.gene008002.t1
chr3.3 CDS 62441204 62442604 62441204 ID=cds.MS.gene008002.t1;Parent=MS.gene008002.t1
chr3.3 exon 62440770 62440916 62440770 ID=MS.gene008002.t1.exon4;Parent=MS.gene008002.t1
chr3.3 CDS 62440770 62440916 62440770 ID=cds.MS.gene008002.t1;Parent=MS.gene008002.t1
chr3.3 exon 62438474 62440426 62438474 ID=MS.gene008002.t1.exon5;Parent=MS.gene008002.t1
chr3.3 CDS 62438474 62440426 62438474 ID=cds.MS.gene008002.t1;Parent=MS.gene008002.t1
Gene Sequence

>MS.gene008002

ATGGCGCCCATAAAAAGGCATTTGCATCAATGGAAGCATCCATTCGATGCTAATTATCGTAAGCTTTTTTTTTTCCCCTTAATTTTATTACTATATATGCATGAGAAAGAAATAAAAAGAATAGCAAAATATGAAAAATCATCAATGGATTACAACATTGATTTTGTGATATTGAAAAGATTGTTATTCATTACCATGATGAATGCAACAAATGATATAGACTTGAATCCTCTTCAACCGGCTATAGATTGTTAGATTAAGAGAGATGCAGCAGACTGCTTATAAAGTTAGCTGCAAAGGATTCACTTTGTATTTGTACACTTGATAAATTTGTTGGTTTTGTACATTATTAACCAAATTGTGAATTAACAAAGCTCTTCGAATCGTTAATAAGTTACTTAATCTTGATTATTAACATTTAAAATCATAGTCAATACAGTAGATTACATGATTAATGAATTATTCAATCTTGATTTAGTTAAACGTTTGTTGGTTTCCCTTCTAGGTTTGGTTTATGTCTCCCACATTTTTGTTATTTTTCCTTTTACTTGGAGATGATTTTTGTTTTGCACACATAATTGAGATGTCAGTAATTCATAATTATATCTCTTTGCAACCTTAATTTTTCTTAGAAAAACTATCCAATCTTGATACTTATTGTATATTCATTAACAAAACTCAACTAATAAGACATAAACCATGATTTTGAATGTGGCATGCATGTACTTTCAGTTCTGATCAATGTAATTGAAAATTAATACATTTTAATTACAGGACAAACGACTATTTATTTTCTGTTGTGGCCTTGCAGAAACTAGTTAGAGCAAATTTCTATAACTTCATGTTCTCATTCATTAATATCTATAGATTTTTTACTATAGCTGCTTCCCCTAATTCTTGTTTCAAAACAGCATTTGAAGCAGTATTGAATGGATCATGGCAACCTGTGGAACTCTTAAAAATAGAGTCAGGAAAAACTACCTTACGTTTCATTGATACTGAACAAATTCAAAGCACTTTGTCATCAGATATTCGGATAAGATCAAGGAAAGCTACTTCATCTGATTGCTCCAGCTTTTTACGACCTGGAATTGATATATCTATGCTATTAGGCTATCGATACAATGATAATTCAGATCCATTTACGTCTATTCCAGTAAGTTCAAACTTTTTATTAAACTTCATTTCTTAGTAAACTGGAGTTTATATGCATTTATTTGTTGATCTTTAATTTCTTGATAAAAAAAAAGGGCAACCCGGTGCACTAGAGCTCCCGCATATGCAGGGTCCGGGAAGGGGTCCCACCATTTGGTGTATTGTACGGGAAGGGGTCCCACCATTTGGTGTATTGTACGCAGCCTTACCCTGTTTTACACAAGAGGCTGTTTCCAAGACTTGAACCCGTGACCTTTCAGTCACATGACAACAACTTTACTAGTTGCGCCAAGGTTACCCGTGACCTTTCTTGATATTTTTTTTTTTATCTGAACCCTCCGATTTGTAAGGAACTGGCCCCGGTAATCCAGAGTTCACCCAGGAGCGAAGTTAAGTCTAGTCAATGATTGTTCTAGCCATAATTTGAACTTGGATTTTCATGAATGATTTGTCCTTAACTGAATTAACCACTTGAAATAAATCACATTTGATACATGTTTAATTTCTTGATGTTGACTTACCAAACACCTGGCTTGATATTTATCTCTTTGTAAAATGTAGATGTGGATTGATGCAAGAATAAATTCTATACATAGACAGCCTCACAAATCCGATCAATGTTCATGTCAATTTTATGTTAACTTATATGATGATCAAGGTTCACTTGGTACAGAGGTAAAAACTCTTAATAAAGAGGTTAATGCAATTGAAATAGATCAAATTTTCATCCTCCAAAGGCTTCAACATAATACTTGTGAAGGCTTGTTAAAAGAAAATGATACCTCTGAAATTAAGCCTTATAGGTGGGATTCATCAGAAGATTGCTCTTCATTATCACAATCTAGATTACTCGTTGGGAAATTTTCATCTGATCTTTCGTGGTTTGTAATTACATCTTTTTTAAAGAAGGTTTCATTCCATATAAGATCTGTGCAAAACAAGATTGTGTATCAAGTTATGGGAAATGAAACTGACATTATTAGTCCTTGGCTTATAAATGTTGTGAACTTCAGCTTAAAAAAGGAATCACTAGTACCTATTGTTTCTCAATTTGATGTATTTTATGATTATGATGGAGAAGAAGATGAAGCGCCACCAAAGCCATCACATGAAGTTGAAGGCTTGCGACGTTCGAAACGTAGGAATGTACAGCCTGAACGTTACGTAGGTTGTGTTGTTGAGAAGTTGGAAGTTGGTAATTTTCGAACGTGTCCCTACAAGAGAACAACTTATATGATAGAAGATGAAAACTCTTCTTCAGATTCAGAAGAGGATGGTGGTAAGAGTGATCAAAAGGTTAATAAGGTGAATCATTGCAAAGCTATTAATGTGAGCACAAGGAACAAAAATTATGATGGTGATGGCAAGTTTAAGGTACATAAAACTGATGACATTTCTTCCAAATATCATTATTTGACTAATTATATTTCTTGTGCAAAGAAGAATGGTGTTGATGTATTGAATTTGGAGTACGGCAATGAGCCTACAACAATATCAAGTGATGAAGAAGTTGATGGTAATGTTACTTTGAGAAATTATAATAGTTTATTTAAAGAGAAGATAAAGAGGAAGAGACTTCATGTTGTGGATGATATGGATTTTCAAACCAAATGGGAAGGGATACATTTCAAAAAAGAAGCTCCAACAGAAAATTTTCATTCGAGTTATTTGTCTAACAGAAGTCATGTTCATGAAGAACCAGATCATAAAGGCGGTAGAACATCCAACGCTGATGCCTGCAAGGAAATAATAGATAGTTACATGAAGAATTTTGATAGTCTACCAACTGAAGAAGAGCCTACTGTAAATGAGAAGCGGAAGGAAACAAGACTGTTGGAGAAAAAGGAAGAAGAAAAAGTATCGAAAAGCAATGATGAGGAAGAATATCCTGATGATTTGGATGCCTTGTGGGAAGAAATGAATACAGCTTTGACATCAAGTTATCTTCTTGATGGAACCACGGTGTGTGTGACAATTTTTAGTATTAATTTTAAATATTTTCTTGAGTTTATTTTTGTTACACCGTTGGTGTAAAAAGTTTAAAACTGTCGGCAAATCACAACCAATTGTATGTGTGACTTTAAAAGTAACTATGATTGAAGTCAAACATTTTTAATGATGTGACAATTATGATTGGCTGACAGTCTACAGAGTCTTTACACTGGCGATGTTTATGAATTAAATTCTTTTTTTTTTTGTTTTTGTCTTCTTTTATAAGGCTAAAGACTGATTCAGTTCAAATATAGCAGGGTTCAACTGCTGAGGTTGTAGCTGATACCAAGAAAGAATCCAGGGATAGTTGTGAACATGATTTTAGATTGGATGAAGAAATTGGAATCTACTGCCTTCGATGTGGATTTGTGAAAACCGCAATACGTGACATTTCTGAGCCATTTGTAAGTCAAATATAAAAGAATAACAAAAGTCTACATGTAATTTTAGTCCCTCATTTTGTTGGATATGTTGTCTACTGCAATGTGTAAATATCAGCAATAGTGTAGTGAAATTTGAACAAATCGCTATTGTTCTGCAATAAGCTATTTAGTACAAAATGCTGTCAAATAGCGGCGCTGTATGTTGCATAGCACAATTTTAACAAACTTCCTATTTTTCGTGATTCACGATTGACAACACTGTTCTGCTGATGTTAACTGTATTCTCCTTATTTGGTTAGATATTTTGTTTATTGCTTGCTCCAGTATGAATCTACCTGATAACTTAATTTATATATAATGATAGGTGGAATGCCCAAAGAGGTACAAAGAGGAGAAACAGTGCAGTGAAGAAAATAAGGAACATAAATCAGAGCCAAAAGTTGATGAAGATTATAATAATGATATGTTCTCGACTCATGCTACTGATCCTGATGAACCATTGACTAATGATATCGACAATGTTTGGGAATTGATTCCTGAACTTGAAGAAAAGATGCATGAACACCAGAAAAAAGCTTTTGAATTTCTTTGGCATAACATTGCTGGCTCTATGGAACCATCACTCATGGAAGAAAAATCCAACTCAAGTAGTGGCTGTGTTATATCACATGCTCCTGGAGCAGGAAAAACCTTTCTCATCATTTCTTTTCTTGTAAGTTACTTGAAGTTATTTCCAGGGAAACGACCTCTAGTCCTAGCTCCAAAAACCACACTCTACACGTGGCGAAAAGAGTTCAAAAAATGGAAGATTCCTGTGCCGGTTTATCTTATCCATGGCCGTCGAACCTCTCCAGGTTCAAGTTCGACGACACCAAAATCAATGATTCTTCCTGGATTTCCAAGACCTTCTAGTGATGTCAAACATGTTTTGGATTGTCTTCGCAAGATACAGAAGTGGCACTCACACCCTAGTGTTCTTGTCATGGGCTATACTTCATTTTTACAATTAATGAGATCAAAAGATACAAAATTCGCACACAGAAAATACATGGCCAAAGCATTGAGAGAAAGCCCTGGAATCTTGATACTTGATGAAGGACACAATCCTAGAAGCACTAAATCAAGGTTGAGGAAATGTTTAATGAAACTTCCAACAGAATTGAGAATATTACTCTCCGGCACATTGTTTCAGAACAATTTCGGTGAATATTTCAACACACTTTGTTTAGCTAGACCGAAATTTGTTCATGAAGTTCTACAAGAGTTAGATTCTAAATACCGAAGGAAAGGCGGAAAAATTGCGAAGAAAGAACGTCATTTGCTTGAGGCGCGCGCAAGAAAATTCTTCTTGAACAACATTGAAAAGAAAATTAACTCAGATATTGATGAGGAGAAGATGCAGGGTCTATATGTGCTGCGAAAAATCACTTCCGGTTTTATTGATGTGTACGACAGTGGAAATTCTTCTGAGACTCTTCCTGGTTTACAAATCTATACATTGCTCATGAATACGTCCGATGAACAGCATGAGATTGTACAGAAACTACAGAGGAAAATGGCTGAGAGTACCAGTTACCCTCTTGAGGTTGAGCTTTTGATAACACTTGGATCAATACATCCATGGCTGATCAAAACAGCTGCATCATGTGCAACTAAGTTTTTTGCGGAGGAAGAATTGAAGAAACTAGAAACAAGCAAATTTGATTTGAGAAAAGGTTCCAAAGTAAGATTTGTTTTGAGCCTAATCTCACGAGTGGTGAAAAATGAAAAGGTTCTTATCTTTTGTCACAACCTTGCACCTGTGAGATTCTTAATAGAGTTATTTGAGAAATATTTTCAGTGGCAAAATGGTAAAGAGATTATGGTACTAACGGGTGAGCTAGACTTGTTTGAAAGAGGGAAAGTGATAGATAAATTTGAAGATCAAAGCAGCGGTTCAAAGATACTTCTTGCTTCAATCAATGCTTGTGCTGAAGGTATAAGTTTAACAGCAGCTTCTAGAGTGATTTTTCTGGACTCTGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCACGCGCTTTTCGACCGGGCCAGCAGAAAATGGTTTATGTGTATCAGTTACTGACGACCGGGTCGATGGAAGAAGATAAGTATAGAAGAACTACTTGGAAAGAGTGGGTTTCTTGCATGATTTTTAGTGAGGAGTTTGTGGAAGATCCTTCTAAATGGCAAGCAGAGAAGATTGAAGATGATATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCACATGATTATGAAGAATGAAAAGGCTTCAACAATCTAA
Protein sequence

>MS.gene008002.t1

MAPIKRHLHQWKHPFDANYPFEAVLNGSWQPVELLKIESGKTTLRFIDTEQIQSTLSSDIRIRSRKATSSDCSSFLRPGIDISMLLGYRYNDNSDPFTSIPMWIDARINSIHRQPHKSDQCSCQFYVNLYDDQGSLGTEVKTLNKEVNAIEIDQIFILQRLQHNTCEGLLKENDTSEIKPYRWDSSEDCSSLSQSRLLVGKFSSDLSWFVITSFLKKVSFHIRSVQNKIVYQVMGNETDIISPWLINVVNFSLKKESLVPIVSQFDVFYDYDGEEDEAPPKPSHEVEGLRRSKRRNVQPERYVGCVVEKLEVGNFRTCPYKRTTYMIEDENSSSDSEEDGGKSDQKVNKVNHCKAINVSTRNKNYDGDGKFKVHKTDDISSKYHYLTNYISCAKKNGVDVLNLEYGNEPTTISSDEEVDGNVTLRNYNSLFKEKIKRKRLHVVDDMDFQTKWEGIHFKKEAPTENFHSSYLSNRSHVHEEPDHKGGRTSNADACKEIIDSYMKNFDSLPTEEEPTVNEKRKETRLLEKKEEEKVSKSNDEEEYPDDLDALWEEMNTALTSSYLLDGTTGSTAEVVADTKKESRDSCEHDFRLDEEIGIYCLRCGFVKTAIRDISEPFVECPKRYKEEKQCSEENKEHKSEPKVDEDYNNDMFSTHATDPDEPLTNDIDNVWELIPELEEKMHEHQKKAFEFLWHNIAGSMEPSLMEEKSNSSSGCVISHAPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWRKEFKKWKIPVPVYLIHGRRTSPGSSSTTPKSMILPGFPRPSSDVKHVLDCLRKIQKWHSHPSVLVMGYTSFLQLMRSKDTKFAHRKYMAKALRESPGILILDEGHNPRSTKSRLRKCLMKLPTELRILLSGTLFQNNFGEYFNTLCLARPKFVHEVLQELDSKYRRKGGKIAKKERHLLEARARKFFLNNIEKKINSDIDEEKMQGLYVLRKITSGFIDVYDSGNSSETLPGLQIYTLLMNTSDEQHEIVQKLQRKMAESTSYPLEVELLITLGSIHPWLIKTAASCATKFFAEEELKKLETSKFDLRKGSKVRFVLSLISRVVKNEKVLIFCHNLAPVRFLIELFEKYFQWQNGKEIMVLTGELDLFERGKVIDKFEDQSSGSKILLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSMEEDKYRRTTWKEWVSCMIFSEEFVEDPSKWQAEKIEDDILREMVEEDKSKAIHMIMKNEKASTI