Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008011.t1 | XP_003600972.1 | 99.4 | 159 | 1 | 0 | 1 | 159 | 1 | 159 | 4.50E-84 | 320.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008011.t1 | Q8LBW3 | 80.6 | 129 | 23 | 1 | 1 | 129 | 1 | 127 | 4.6e-53 | 208.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008011.t1 | G7J2B8 | 99.4 | 159 | 1 | 0 | 1 | 159 | 1 | 159 | 3.2e-84 | 320.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene008011.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008011.t1 | MTR_3g071590 | 99.371 | 159 | 1 | 0 | 1 | 159 | 1 | 159 | 7.23e-118 | 329 |
| MS.gene008011.t1 | MTR_5g083230 | 75.155 | 161 | 31 | 4 | 1 | 156 | 1 | 157 | 4.86e-81 | 237 |
| MS.gene008011.t1 | MTR_3g031660 | 65.359 | 153 | 40 | 2 | 3 | 142 | 2 | 154 | 3.95e-69 | 207 |
| MS.gene008011.t1 | MTR_2g068760 | 75.455 | 110 | 27 | 0 | 4 | 113 | 9 | 118 | 8.49e-58 | 177 |
| MS.gene008011.t1 | MTR_4g083680 | 70.339 | 118 | 31 | 1 | 2 | 115 | 5 | 122 | 1.92e-56 | 175 |
| MS.gene008011.t1 | MTR_2g093310 | 63.063 | 111 | 41 | 0 | 7 | 117 | 32 | 142 | 1.05e-50 | 161 |
| MS.gene008011.t1 | MTR_4g060950 | 65.179 | 112 | 38 | 1 | 7 | 117 | 23 | 134 | 6.83e-50 | 159 |
| MS.gene008011.t1 | MTR_1g095850 | 71.287 | 101 | 29 | 0 | 9 | 109 | 73 | 173 | 1.11e-48 | 157 |
| MS.gene008011.t1 | MTR_5g083960 | 52.795 | 161 | 67 | 3 | 4 | 158 | 35 | 192 | 2.01e-48 | 155 |
| MS.gene008011.t1 | MTR_3g094690 | 63.393 | 112 | 41 | 0 | 4 | 115 | 43 | 154 | 3.79e-47 | 153 |
| MS.gene008011.t1 | MTR_6g005080 | 52.113 | 142 | 59 | 3 | 3 | 144 | 5 | 137 | 1.44e-46 | 149 |
| MS.gene008011.t1 | MTR_7g033800 | 59.829 | 117 | 43 | 1 | 5 | 117 | 8 | 124 | 2.41e-46 | 149 |
| MS.gene008011.t1 | MTR_6g005070 | 53.571 | 140 | 56 | 3 | 5 | 144 | 6 | 136 | 3.08e-46 | 148 |
| MS.gene008011.t1 | MTR_3g077240 | 66.346 | 104 | 35 | 0 | 6 | 109 | 8 | 111 | 5.43e-46 | 149 |
| MS.gene008011.t1 | MTR_4g105170 | 66.019 | 103 | 35 | 0 | 7 | 109 | 10 | 112 | 7.54e-46 | 148 |
| MS.gene008011.t1 | MTR_3g073690 | 61.111 | 108 | 42 | 0 | 1 | 108 | 2 | 109 | 1.61e-45 | 148 |
| MS.gene008011.t1 | MTR_3g094690 | 62.500 | 112 | 41 | 1 | 4 | 115 | 43 | 153 | 1.42e-44 | 146 |
| MS.gene008011.t1 | MTR_5g075020 | 66.038 | 106 | 36 | 0 | 4 | 109 | 39 | 144 | 1.55e-42 | 141 |
| MS.gene008011.t1 | MTR_3g071420 | 63.366 | 101 | 37 | 0 | 5 | 105 | 11 | 111 | 1.71e-42 | 139 |
| MS.gene008011.t1 | MTR_5g075020 | 66.038 | 106 | 36 | 0 | 4 | 109 | 43 | 148 | 2.10e-42 | 141 |
| MS.gene008011.t1 | MTR_3g452660 | 59.615 | 104 | 42 | 0 | 5 | 108 | 4 | 107 | 2.43e-42 | 142 |
| MS.gene008011.t1 | MTR_5g017950 | 58.333 | 108 | 45 | 0 | 1 | 108 | 1 | 108 | 7.86e-42 | 142 |
| MS.gene008011.t1 | MTR_5g083010 | 62.376 | 101 | 38 | 0 | 5 | 105 | 8 | 108 | 2.03e-41 | 137 |
| MS.gene008011.t1 | MTR_7g096530 | 57.143 | 105 | 44 | 1 | 5 | 108 | 11 | 115 | 1.93e-37 | 128 |
| MS.gene008011.t1 | MTR_8g040900 | 59.615 | 104 | 42 | 0 | 5 | 108 | 4 | 107 | 5.65e-37 | 127 |
| MS.gene008011.t1 | MTR_1g070220 | 51.695 | 118 | 56 | 1 | 8 | 124 | 15 | 132 | 1.08e-36 | 125 |
| MS.gene008011.t1 | MTR_5g093010 | 48.624 | 109 | 56 | 0 | 9 | 117 | 6 | 114 | 4.03e-36 | 122 |
| MS.gene008011.t1 | MTR_7g074990 | 56.863 | 102 | 43 | 1 | 8 | 108 | 20 | 121 | 5.88e-36 | 124 |
| MS.gene008011.t1 | MTR_7g028905 | 52.941 | 102 | 48 | 0 | 7 | 108 | 4 | 105 | 1.24e-35 | 120 |
| MS.gene008011.t1 | MTR_7g096610 | 43.919 | 148 | 80 | 2 | 1 | 145 | 1 | 148 | 3.47e-35 | 122 |
| MS.gene008011.t1 | MTR_8g036105 | 56.075 | 107 | 46 | 1 | 7 | 112 | 17 | 123 | 7.06e-35 | 121 |
| MS.gene008011.t1 | MTR_7g075230 | 48.092 | 131 | 65 | 2 | 2 | 129 | 6 | 136 | 7.19e-35 | 120 |
| MS.gene008011.t1 | MTR_8g036085 | 41.290 | 155 | 78 | 3 | 7 | 148 | 22 | 176 | 2.02e-34 | 120 |
| MS.gene008011.t1 | MTR_1g070205 | 45.139 | 144 | 70 | 5 | 8 | 146 | 12 | 151 | 3.49e-34 | 120 |
| MS.gene008011.t1 | MTR_6g027710 | 45.299 | 117 | 63 | 1 | 7 | 122 | 39 | 155 | 1.14e-33 | 118 |
| MS.gene008011.t1 | MTR_5g080470 | 54.082 | 98 | 44 | 1 | 7 | 103 | 6 | 103 | 2.31e-33 | 116 |
| MS.gene008011.t1 | MTR_8g079660 | 47.525 | 101 | 53 | 0 | 8 | 108 | 8 | 108 | 1.26e-29 | 108 |
| MS.gene008011.t1 | MTR_8g079620 | 44.554 | 101 | 56 | 0 | 8 | 108 | 8 | 108 | 1.49e-28 | 105 |
| MS.gene008011.t1 | MTR_6g027700 | 46.535 | 101 | 53 | 1 | 8 | 107 | 7 | 107 | 2.46e-28 | 104 |
| MS.gene008011.t1 | MTR_8g079580 | 44.545 | 110 | 60 | 1 | 1 | 109 | 1 | 110 | 1.19e-27 | 103 |
| MS.gene008011.t1 | MTR_4g107450 | 38.776 | 147 | 81 | 3 | 1 | 140 | 3 | 147 | 5.83e-27 | 102 |
| MS.gene008011.t1 | MTR_6g011230 | 40.404 | 99 | 59 | 0 | 3 | 101 | 6 | 104 | 6.07e-26 | 98.2 |
| MS.gene008011.t1 | MTR_6g011250 | 38.971 | 136 | 77 | 3 | 9 | 143 | 10 | 140 | 6.39e-26 | 97.4 |
| MS.gene008011.t1 | MTR_2g100020 | 38.462 | 104 | 64 | 0 | 5 | 108 | 16 | 119 | 1.63e-22 | 90.9 |
| MS.gene008011.t1 | MTR_8g017090 | 37.500 | 104 | 65 | 0 | 5 | 108 | 9 | 112 | 5.13e-22 | 89.7 |
| MS.gene008011.t1 | MTR_6g011200 | 43.750 | 80 | 44 | 1 | 9 | 87 | 10 | 89 | 5.15e-22 | 89.0 |
| MS.gene008011.t1 | MTR_4g088035 | 38.202 | 89 | 55 | 0 | 7 | 95 | 5 | 93 | 2.75e-19 | 82.0 |
| MS.gene008011.t1 | MTR_5g085390 | 33.333 | 147 | 89 | 4 | 9 | 146 | 10 | 156 | 5.03e-19 | 80.9 |
| MS.gene008011.t1 | MTR_4g099230 | 39.362 | 94 | 52 | 2 | 9 | 97 | 3 | 96 | 1.27e-18 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008011.t1 | AT2G30130 | 77.698 | 139 | 25 | 2 | 1 | 135 | 1 | 137 | 4.95e-73 | 218 |
| MS.gene008011.t1 | AT1G16530 | 67.544 | 114 | 36 | 1 | 3 | 115 | 9 | 122 | 2.59e-52 | 164 |
| MS.gene008011.t1 | AT1G07900 | 64.865 | 111 | 39 | 0 | 7 | 117 | 32 | 142 | 1.57e-50 | 160 |
| MS.gene008011.t1 | AT2G28500 | 65.138 | 109 | 38 | 0 | 7 | 115 | 54 | 162 | 6.40e-50 | 160 |
| MS.gene008011.t1 | AT1G31320 | 71.171 | 111 | 32 | 0 | 4 | 114 | 9 | 119 | 9.28e-50 | 157 |
| MS.gene008011.t1 | AT2G30340 | 64.151 | 106 | 38 | 0 | 4 | 109 | 48 | 153 | 2.25e-46 | 152 |
| MS.gene008011.t1 | AT2G30340 | 64.151 | 106 | 38 | 0 | 4 | 109 | 49 | 154 | 2.49e-46 | 152 |
| MS.gene008011.t1 | AT3G27650 | 62.385 | 109 | 41 | 0 | 1 | 109 | 32 | 140 | 3.89e-46 | 148 |
| MS.gene008011.t1 | AT5G63090 | 66.990 | 103 | 34 | 0 | 6 | 108 | 9 | 111 | 5.67e-46 | 149 |
| MS.gene008011.t1 | AT5G63090 | 66.990 | 103 | 34 | 0 | 6 | 108 | 9 | 111 | 5.67e-46 | 149 |
| MS.gene008011.t1 | AT5G63090 | 66.990 | 103 | 34 | 0 | 6 | 108 | 9 | 111 | 5.67e-46 | 149 |
| MS.gene008011.t1 | AT5G63090 | 66.990 | 103 | 34 | 0 | 6 | 108 | 9 | 111 | 5.67e-46 | 149 |
| MS.gene008011.t1 | AT2G40470 | 59.542 | 131 | 51 | 1 | 4 | 132 | 16 | 146 | 1.72e-45 | 148 |
| MS.gene008011.t1 | AT2G40470 | 59.542 | 131 | 51 | 1 | 4 | 132 | 41 | 171 | 3.49e-45 | 148 |
| MS.gene008011.t1 | AT3G26660 | 62.264 | 106 | 40 | 0 | 9 | 114 | 6 | 111 | 4.22e-45 | 144 |
| MS.gene008011.t1 | AT3G26620 | 62.264 | 106 | 40 | 0 | 9 | 114 | 6 | 111 | 5.37e-45 | 144 |
| MS.gene008011.t1 | AT2G23660 | 56.731 | 104 | 45 | 0 | 6 | 109 | 3 | 106 | 1.91e-42 | 143 |
| MS.gene008011.t1 | AT2G23660 | 56.731 | 104 | 45 | 0 | 6 | 109 | 3 | 106 | 1.91e-42 | 143 |
| MS.gene008011.t1 | AT2G23660 | 56.731 | 104 | 45 | 0 | 6 | 109 | 3 | 106 | 1.91e-42 | 143 |
| MS.gene008011.t1 | AT3G11090 | 56.000 | 125 | 53 | 1 | 5 | 127 | 8 | 132 | 2.95e-42 | 138 |
| MS.gene008011.t1 | AT5G66870 | 52.000 | 125 | 60 | 0 | 4 | 128 | 3 | 127 | 1.62e-41 | 141 |
| MS.gene008011.t1 | AT1G65620 | 61.905 | 105 | 40 | 0 | 4 | 108 | 5 | 109 | 5.70e-39 | 131 |
| MS.gene008011.t1 | AT1G65620 | 61.905 | 105 | 40 | 0 | 4 | 108 | 5 | 109 | 5.70e-39 | 131 |
| MS.gene008011.t1 | AT1G65620 | 61.905 | 105 | 40 | 0 | 4 | 108 | 5 | 109 | 5.70e-39 | 131 |
| MS.gene008011.t1 | AT1G65620 | 61.905 | 105 | 40 | 0 | 4 | 108 | 5 | 109 | 5.70e-39 | 131 |
| MS.gene008011.t1 | AT1G65620 | 61.905 | 105 | 40 | 0 | 4 | 108 | 5 | 109 | 5.70e-39 | 131 |
| MS.gene008011.t1 | AT4G00210 | 54.310 | 116 | 49 | 2 | 1 | 112 | 1 | 116 | 2.25e-37 | 127 |
| MS.gene008011.t1 | AT3G03760 | 55.769 | 104 | 45 | 1 | 7 | 109 | 50 | 153 | 7.75e-37 | 128 |
| MS.gene008011.t1 | AT2G42430 | 57.547 | 106 | 44 | 1 | 4 | 108 | 11 | 116 | 8.91e-37 | 127 |
| MS.gene008011.t1 | AT2G45410 | 57.282 | 103 | 43 | 1 | 11 | 112 | 19 | 121 | 2.11e-34 | 119 |
| MS.gene008011.t1 | AT2G42440 | 46.269 | 134 | 66 | 3 | 7 | 139 | 6 | 134 | 3.23e-34 | 120 |
| MS.gene008011.t1 | AT3G58190 | 54.639 | 97 | 43 | 1 | 8 | 103 | 11 | 107 | 3.54e-33 | 117 |
| MS.gene008011.t1 | AT2G31310 | 50.926 | 108 | 51 | 2 | 1 | 107 | 1 | 107 | 1.64e-32 | 114 |
| MS.gene008011.t1 | AT2G45420 | 51.923 | 104 | 49 | 1 | 11 | 113 | 40 | 143 | 1.73e-32 | 116 |
| MS.gene008011.t1 | AT4G00220 | 52.885 | 104 | 48 | 1 | 11 | 113 | 20 | 123 | 4.21e-32 | 114 |
| MS.gene008011.t1 | AT3G50510 | 43.902 | 123 | 67 | 1 | 6 | 126 | 10 | 132 | 2.36e-30 | 109 |
| MS.gene008011.t1 | AT3G50510 | 43.902 | 123 | 67 | 1 | 6 | 126 | 10 | 132 | 2.36e-30 | 109 |
| MS.gene008011.t1 | AT5G06080 | 51.376 | 109 | 47 | 2 | 7 | 114 | 6 | 109 | 7.38e-30 | 107 |
| MS.gene008011.t1 | AT5G35900 | 36.429 | 140 | 71 | 2 | 9 | 148 | 6 | 127 | 6.27e-26 | 98.2 |
| MS.gene008011.t1 | AT1G72980 | 38.525 | 122 | 74 | 1 | 3 | 123 | 8 | 129 | 4.93e-25 | 95.9 |
| MS.gene008011.t1 | AT3G47870 | 37.037 | 108 | 68 | 0 | 1 | 108 | 29 | 136 | 2.63e-24 | 96.3 |
| MS.gene008011.t1 | AT3G13850 | 35.537 | 121 | 74 | 1 | 9 | 125 | 37 | 157 | 2.42e-23 | 92.8 |
| MS.gene008011.t1 | AT1G06280 | 49.351 | 77 | 39 | 0 | 9 | 85 | 25 | 101 | 8.38e-21 | 84.7 |
| MS.gene008011.t1 | AT4G22700 | 35.821 | 134 | 72 | 4 | 9 | 141 | 6 | 126 | 3.45e-18 | 77.8 |
| MS.gene008011.t1 | AT2G19820 | 38.542 | 96 | 58 | 1 | 7 | 101 | 11 | 106 | 7.45e-17 | 72.4 |
| MS.gene008011.t1 | AT5G15060 | 40.000 | 80 | 44 | 2 | 3 | 79 | 12 | 90 | 4.95e-14 | 65.5 |
| MS.gene008011.t1 | AT1G36000 | 29.885 | 87 | 61 | 0 | 8 | 94 | 9 | 95 | 1.80e-12 | 61.2 |
| MS.gene008011.t1 | AT3G27940 | 36.364 | 66 | 42 | 0 | 7 | 72 | 4 | 69 | 3.06e-11 | 58.5 |
| MS.gene008011.t1 | AT3G27940 | 36.364 | 66 | 42 | 0 | 7 | 72 | 4 | 69 | 3.06e-11 | 58.5 |
| MS.gene008011.t1 | AT3G27940 | 36.364 | 66 | 42 | 0 | 7 | 72 | 4 | 69 | 3.06e-11 | 58.5 |
Find 21 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTAGCACAACGGCGTCTA+AGG | 0.285930 | 3.3:-62243503 | None:intergenic |
| GCATCAGCTCTTTGTTGAAT+AGG | 0.314081 | 3.3:-62244156 | None:intergenic |
| AGAGTTAAGGACCCTGTTTA+TGG | 0.329312 | 3.3:+62244210 | MS.gene008011:CDS |
| GGATCATGTGAAGGGAAATA+AGG | 0.350330 | 3.3:-62243540 | None:intergenic |
| GTTGATCATCATGTTTCATC+TGG | 0.388561 | 3.3:-62244320 | None:intergenic |
| GCTCCAACACAACCATAAAC+AGG | 0.400328 | 3.3:-62244222 | None:intergenic |
| GCATTTGAAGCTCAGAAACT+TGG | 0.418459 | 3.3:-62244263 | None:intergenic |
| TGAAGCAAATGCAAGAGTTA+AGG | 0.446961 | 3.3:+62244197 | MS.gene008011:CDS |
| TGAATTACATTGCTTGAAGA+AGG | 0.450118 | 3.3:-62244411 | None:intergenic |
| GACCCTGTTTATGGTTGTGT+TGG | 0.463653 | 3.3:+62244219 | MS.gene008011:CDS |
| GATCATAAGATTTATGATCA+AGG | 0.495019 | 3.3:-62244368 | None:intergenic |
| CCTTAGACGCCGTTGTGCTA+AGG | 0.517412 | 3.3:+62243503 | MS.gene008011:CDS |
| GAAGGAAAGTTGAAATACTG+AGG | 0.552181 | 3.3:-62244393 | None:intergenic |
| ATCATAAGATTTATGATCAA+GGG | 0.554510 | 3.3:-62244367 | None:intergenic |
| CAATGTTAGCAAAATGCTCC+AGG | 0.562470 | 3.3:+62243602 | MS.gene008011:CDS |
| AAAATTTGCAATTGTTCACA+AGG | 0.564865 | 3.3:+62243566 | MS.gene008011:CDS |
| AGGAGTTTGCATGAAGCACA+AGG | 0.592427 | 3.3:-62243483 | None:intergenic |
| GAGTTTGCATGAAGCACAAG+GGG | 0.629954 | 3.3:-62243481 | None:intergenic |
| CTCCAACACAACCATAAACA+GGG | 0.642977 | 3.3:-62244221 | None:intergenic |
| GGAGTTTGCATGAAGCACAA+GGG | 0.671143 | 3.3:-62243482 | None:intergenic |
| AGATACAATCCTTAGCACAA+CGG | 0.718268 | 3.3:-62243512 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATGCAATTTTCTTATT+GGG | + | chr3.3:62244037-62244056 | MS.gene008011:intron | 15.0% |
| !!! | AACTTTTTTTTGTTAAAGAA+AGG | + | chr3.3:62244094-62244113 | MS.gene008011:intron | 15.0% |
| !!! | TCGTTTTTAAAATAGAATAT+TGG | - | chr3.3:62243981-62244000 | None:intergenic | 15.0% |
| !! | AAATGATATGACATTAAACA+TGG | - | chr3.3:62243913-62243932 | None:intergenic | 20.0% |
| !! | ATCATAAGATTTATGATCAA+GGG | - | chr3.3:62244370-62244389 | None:intergenic | 20.0% |
| !! | ATGTCATATCATTTAACAAT+TGG | + | chr3.3:62243919-62243938 | MS.gene008011:intron | 20.0% |
| !!! | AAAACTTCGATTTTAAAATG+TGG | - | chr3.3:62243777-62243796 | None:intergenic | 20.0% |
| !!! | AAGTTTTTCTTTTTCTTTCA+AGG | - | chr3.3:62243653-62243672 | None:intergenic | 20.0% |
| !!! | CAAAAATGCAATTTTCTTAT+TGG | + | chr3.3:62244036-62244055 | MS.gene008011:intron | 20.0% |
| !!! | TGAACAATTGCAAATTTTTT+AGG | - | chr3.3:62243564-62243583 | None:intergenic | 20.0% |
| !!! | TTTTTGTTAAAGAAAGGAAA+TGG | + | chr3.3:62244100-62244119 | MS.gene008011:intron | 20.0% |
| ! | AAAATTTGCAATTGTTCACA+AGG | + | chr3.3:62243566-62243585 | MS.gene008011:CDS | 25.0% |
| ! | CAGATATTTGTTTCAAAAAG+TGG | - | chr3.3:62243950-62243969 | None:intergenic | 25.0% |
| ! | GATCATAAGATTTATGATCA+AGG | - | chr3.3:62244371-62244390 | None:intergenic | 25.0% |
| !! | AGAACAAAAGTACAATTAAG+CGG | - | chr3.3:62243725-62243744 | None:intergenic | 25.0% |
| !! | ATTTCTTGATTTTGCATTAG+AGG | - | chr3.3:62244345-62244364 | None:intergenic | 25.0% |
| !!! | AATTTTTTAGGATCATGTGA+AGG | - | chr3.3:62243552-62243571 | None:intergenic | 25.0% |
| !!! | ATTTTTTAGGATCATGTGAA+GGG | - | chr3.3:62243551-62243570 | None:intergenic | 25.0% |
| GACTTATTGTACAATGCTAT+AGG | + | chr3.3:62244128-62244147 | MS.gene008011:intron | 30.0% | |
| TGAATTACATTGCTTGAAGA+AGG | - | chr3.3:62244414-62244433 | None:intergenic | 30.0% | |
| !!! | GTATAAGAGAGCGTTATTTT+AGG | + | chr3.3:62243681-62243700 | MS.gene008011:intron | 30.0% |
| !!! | TATTGGGTTTTGAGTTTTGA+CGG | + | chr3.3:62244053-62244072 | MS.gene008011:intron | 30.0% |
| !!! | TTTTGAGTTTTGACGGTTTT+GGG | + | chr3.3:62244060-62244079 | MS.gene008011:intron | 30.0% |
| AGATACAATCCTTAGCACAA+CGG | - | chr3.3:62243515-62243534 | None:intergenic | 35.0% | |
| ATTTGTTTCAAAAAGTGGCG+TGG | - | chr3.3:62243945-62243964 | None:intergenic | 35.0% | |
| CACCATTAGAGCAAAAATCT+GGG | - | chr3.3:62243839-62243858 | None:intergenic | 35.0% | |
| GAAGGAAAGTTGAAATACTG+AGG | - | chr3.3:62244396-62244415 | None:intergenic | 35.0% | |
| GTTGATCATCATGTTTCATC+TGG | - | chr3.3:62244323-62244342 | None:intergenic | 35.0% | |
| TGAAGCAAATGCAAGAGTTA+AGG | + | chr3.3:62244197-62244216 | MS.gene008011:CDS | 35.0% | |
| TTAGAGCAAAAATCTGGGTT+AGG | - | chr3.3:62243834-62243853 | None:intergenic | 35.0% | |
| ! | AACCCAGATTTTTGCTCTAA+TGG | + | chr3.3:62243834-62243853 | MS.gene008011:intron | 35.0% |
| ! | GCAATTGTTCACAAGGTTTT+TGG | + | chr3.3:62243573-62243592 | MS.gene008011:CDS | 35.0% |
| ! | TATCAAACTCGTTGCAGTTT+TGG | + | chr3.3:62243807-62243826 | MS.gene008011:intron | 35.0% |
| !!! | GATGACTATTTTTGTGAACG+CGG | + | chr3.3:62243999-62244018 | MS.gene008011:intron | 35.0% |
| !!! | GTTTTGAGTTTTGACGGTTT+TGG | + | chr3.3:62244059-62244078 | MS.gene008011:intron | 35.0% |
| AGAGTTAAGGACCCTGTTTA+TGG | + | chr3.3:62244210-62244229 | MS.gene008011:CDS | 40.0% | |
| CAATGTTAGCAAAATGCTCC+AGG | + | chr3.3:62243602-62243621 | MS.gene008011:CDS | 40.0% | |
| CCACCATTAGAGCAAAAATC+TGG | - | chr3.3:62243840-62243859 | None:intergenic | 40.0% | |
| CTCCAACACAACCATAAACA+GGG | - | chr3.3:62244224-62244243 | None:intergenic | 40.0% | |
| GCATCAGCTCTTTGTTGAAT+AGG | - | chr3.3:62244159-62244178 | None:intergenic | 40.0% | |
| GGATCATGTGAAGGGAAATA+AGG | - | chr3.3:62243543-62243562 | None:intergenic | 40.0% | |
| ! | CCAGATTTTTGCTCTAATGG+TGG | + | chr3.3:62243837-62243856 | MS.gene008011:intron | 40.0% |
| ! | GAGCATTTTGCTAACATTGC+TGG | - | chr3.3:62243601-62243620 | None:intergenic | 40.0% |
| ! | GCATTTGAAGCTCAGAAACT+TGG | - | chr3.3:62244266-62244285 | None:intergenic | 40.0% |
| ! | TCAAGGAAGCATAGAAAGTG+TGG | - | chr3.3:62243636-62243655 | None:intergenic | 40.0% |
| !! | TTTTTGCTCTAATGGTGGTG+TGG | + | chr3.3:62243842-62243861 | MS.gene008011:intron | 40.0% |
| !!! | GCTCAGAAACTTGGTTTTGA+AGG | - | chr3.3:62244257-62244276 | None:intergenic | 40.0% |
| !!! | TTGACGGTTTTGGGTGAAAA+TGG | + | chr3.3:62244069-62244088 | MS.gene008011:intron | 40.0% |
| AGGAGTTTGCATGAAGCACA+AGG | - | chr3.3:62243486-62243505 | None:intergenic | 45.0% | |
| GACCCTGTTTATGGTTGTGT+TGG | + | chr3.3:62244219-62244238 | MS.gene008011:CDS | 45.0% | |
| GAGTTTGCATGAAGCACAAG+GGG | - | chr3.3:62243484-62243503 | None:intergenic | 45.0% | |
| GCTCCAACACAACCATAAAC+AGG | - | chr3.3:62244225-62244244 | None:intergenic | 45.0% | |
| GGAGTTTGCATGAAGCACAA+GGG | - | chr3.3:62243485-62243504 | None:intergenic | 45.0% | |
| ! | GAAAGTGTGGATGAAGTACC+TGG | - | chr3.3:62243623-62243642 | None:intergenic | 45.0% |
| CCTTAGACGCCGTTGTGCTA+AGG | + | chr3.3:62243503-62243522 | MS.gene008011:CDS | 55.0% | |
| CCTTAGCACAACGGCGTCTA+AGG | - | chr3.3:62243506-62243525 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 62243462 | 62244467 | 62243462 | ID=MS.gene008011 |
| chr3.3 | mRNA | 62243462 | 62244467 | 62243462 | ID=MS.gene008011.t1;Parent=MS.gene008011 |
| chr3.3 | exon | 62243462 | 62243623 | 62243462 | ID=MS.gene008011.t1.exon1;Parent=MS.gene008011.t1 |
| chr3.3 | CDS | 62243462 | 62243623 | 62243462 | ID=cds.MS.gene008011.t1;Parent=MS.gene008011.t1 |
| chr3.3 | exon | 62244150 | 62244467 | 62244150 | ID=MS.gene008011.t1.exon2;Parent=MS.gene008011.t1 |
| chr3.3 | CDS | 62244150 | 62244467 | 62244150 | ID=cds.MS.gene008011.t1;Parent=MS.gene008011.t1 |
| Gene Sequence |
| Protein sequence |
