Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008086.t1 | XP_003600855.1 | 87.6 | 290 | 32 | 1 | 99 | 388 | 92 | 377 | 3.90E-105 | 391.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008086.t1 | Q9SB42 | 32.9 | 243 | 130 | 8 | 160 | 384 | 141 | 368 | 1.5e-17 | 92.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008086.t1 | G7JAP2 | 87.6 | 290 | 32 | 1 | 99 | 388 | 92 | 377 | 2.8e-105 | 391.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene008086.t1 | TF | GeBP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008086.t1 | MTR_3g070120 | 89.691 | 388 | 29 | 3 | 1 | 388 | 1 | 377 | 0.0 | 575 |
| MS.gene008086.t1 | MTR_2g010790 | 36.103 | 349 | 168 | 16 | 55 | 373 | 82 | 405 | 3.46e-37 | 139 |
| MS.gene008086.t1 | MTR_1g081580 | 35.294 | 119 | 73 | 2 | 135 | 250 | 73 | 190 | 2.96e-14 | 73.9 |
| MS.gene008086.t1 | MTR_7g114600 | 33.036 | 112 | 67 | 2 | 160 | 263 | 111 | 222 | 3.43e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008086.t1 | AT4G25210 | 33.438 | 317 | 163 | 13 | 93 | 384 | 75 | 368 | 1.13e-25 | 107 |
| MS.gene008086.t1 | AT4G00390 | 35.556 | 225 | 112 | 9 | 58 | 268 | 56 | 261 | 2.06e-25 | 106 |
| MS.gene008086.t1 | AT1G11510 | 36.150 | 213 | 114 | 6 | 56 | 260 | 40 | 238 | 3.35e-25 | 105 |
| MS.gene008086.t1 | AT1G61730 | 35.784 | 204 | 99 | 7 | 72 | 258 | 66 | 254 | 1.81e-24 | 103 |
| MS.gene008086.t1 | AT1G11510 | 43.182 | 132 | 64 | 3 | 132 | 260 | 86 | 209 | 1.05e-21 | 95.1 |
| MS.gene008086.t1 | AT4G01260 | 35.135 | 185 | 99 | 6 | 83 | 255 | 33 | 208 | 3.25e-20 | 90.9 |
| MS.gene008086.t1 | AT4G00250 | 31.739 | 230 | 126 | 6 | 50 | 274 | 26 | 229 | 6.27e-20 | 90.1 |
| MS.gene008086.t1 | AT2G25650 | 30.573 | 157 | 101 | 2 | 162 | 315 | 67 | 218 | 9.43e-16 | 78.6 |
| MS.gene008086.t1 | AT4G00238 | 31.176 | 170 | 110 | 3 | 59 | 222 | 34 | 202 | 1.47e-15 | 77.8 |
| MS.gene008086.t1 | AT5G14280 | 41.748 | 103 | 55 | 2 | 153 | 250 | 52 | 154 | 1.21e-14 | 74.3 |
| MS.gene008086.t1 | AT1G66420 | 30.882 | 136 | 90 | 1 | 116 | 251 | 43 | 174 | 4.22e-14 | 72.4 |
| MS.gene008086.t1 | AT1G44810 | 32.544 | 169 | 85 | 6 | 84 | 251 | 70 | 210 | 4.23e-14 | 72.8 |
| MS.gene008086.t1 | AT4G00270 | 33.929 | 112 | 71 | 1 | 162 | 270 | 66 | 177 | 5.43e-13 | 69.7 |
| MS.gene008086.t1 | AT2G01370 | 35.714 | 98 | 62 | 1 | 154 | 250 | 74 | 171 | 7.54e-13 | 68.6 |
| MS.gene008086.t1 | AT5G28040 | 30.387 | 181 | 101 | 8 | 105 | 271 | 79 | 248 | 7.46e-12 | 67.0 |
| MS.gene008086.t1 | AT5G28040 | 30.387 | 181 | 101 | 8 | 105 | 271 | 79 | 248 | 7.46e-12 | 67.0 |
| MS.gene008086.t1 | AT3G04930 | 35.577 | 104 | 57 | 5 | 160 | 255 | 138 | 239 | 2.24e-11 | 65.5 |
| MS.gene008086.t1 | AT3G04930 | 35.714 | 98 | 54 | 4 | 160 | 250 | 138 | 233 | 2.67e-11 | 65.5 |
Find 92 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCTGCTGAATTGTTCT+TGG | 0.198495 | 3.3:+61349776 | None:intergenic |
| ATTCAATGCATCCCTTATTT+TGG | 0.209798 | 3.3:+61348855 | None:intergenic |
| AGGAAACAGCTACCAAAATA+AGG | 0.258688 | 3.3:-61348867 | MS.gene008086:CDS |
| GAAGAGAATGGGAAAGTTAA+TGG | 0.265828 | 3.3:-61349201 | MS.gene008086:CDS |
| TCTTCTGCTGAATTGTTCTT+GGG | 0.288899 | 3.3:+61349777 | None:intergenic |
| GGAGGATACTGGTTTGAGTT+TGG | 0.293728 | 3.3:-61349046 | MS.gene008086:CDS |
| TTGAGCTTTCGAAGAAGATT+TGG | 0.299730 | 3.3:-61349254 | MS.gene008086:CDS |
| GTTGATTTCACTGCCAAATC+AGG | 0.313777 | 3.3:-61349453 | MS.gene008086:CDS |
| TGAGCTTTCGAAGAAGATTT+GGG | 0.331143 | 3.3:-61349253 | MS.gene008086:CDS |
| TAGGGTTTGTTCAATGGGTT+TGG | 0.338716 | 3.3:+61349695 | None:intergenic |
| TGCTGAATTGTTCTTGGGGT+TGG | 0.342217 | 3.3:+61349782 | None:intergenic |
| AGCGAGGACAACTAAGAAAT+TGG | 0.352971 | 3.3:-61349136 | MS.gene008086:CDS |
| AGTAGGATCATTCCCTGATT+TGG | 0.362230 | 3.3:+61349440 | None:intergenic |
| AGCAGCCGGTTCCTTCTTCC+CGG | 0.367777 | 3.3:+61349173 | None:intergenic |
| GGCAGGTGGTATGGAGGGTT+TGG | 0.368058 | 3.3:+61349662 | None:intergenic |
| AAAACCACCAATGGTGAATC+AGG | 0.369727 | 3.3:+61349105 | None:intergenic |
| TCCATACCACCTGCCAGATC+TGG | 0.378422 | 3.3:-61349654 | MS.gene008086:CDS |
| AGGACGTTTGGTTCCAGATC+TGG | 0.379033 | 3.3:+61349641 | None:intergenic |
| ATCAATTGCGCGATAAGGTT+CGG | 0.379484 | 3.3:-61349356 | MS.gene008086:CDS |
| GAATTCATCATCAAGCCATT+AGG | 0.384003 | 3.3:-61348836 | None:intergenic |
| TCCAGATCTGGCAGGTGGTA+TGG | 0.387320 | 3.3:+61349653 | None:intergenic |
| GTCTTTGACGGCGGCGGTGG+CGG | 0.397838 | 3.3:+61349965 | None:intergenic |
| GCTTGATCAATTGCGCGATA+AGG | 0.398297 | 3.3:-61349361 | MS.gene008086:CDS |
| TAAGTACAGAATTGCTGAAA+TGG | 0.402227 | 3.3:-61348920 | MS.gene008086:CDS |
| CTCTTCACCACATCTATAAC+CGG | 0.406554 | 3.3:+61348997 | None:intergenic |
| CGGTGGTGGGTCGTCTTTGA+CGG | 0.412587 | 3.3:+61349953 | None:intergenic |
| CTTCTTCTTGTTCTTCTCCT+CGG | 0.418262 | 3.3:+61349575 | None:intergenic |
| GGAATCAAAGAAGGGTGAAT+TGG | 0.425083 | 3.3:-61348956 | MS.gene008086:CDS |
| GCGGCTGCTTTCTTAGCAGC+CGG | 0.430843 | 3.3:+61349159 | None:intergenic |
| GATGAGGTTGCAATTCTTCA+AGG | 0.431860 | 3.3:-61349480 | MS.gene008086:CDS |
| GTCGTCTTTGACGGCGGCGG+TGG | 0.432622 | 3.3:+61349962 | None:intergenic |
| TTGTTATTGTCATCCTCCTC+CGG | 0.454682 | 3.3:+61349543 | None:intergenic |
| AAGAGAATGGGAAAGTTAAT+GGG | 0.461323 | 3.3:-61349200 | MS.gene008086:CDS |
| ATTGAACAAACCCTAAAATC+AGG | 0.464800 | 3.3:-61349687 | MS.gene008086:CDS |
| GGAAACAGCTACCAAAATAA+GGG | 0.466999 | 3.3:-61348866 | MS.gene008086:CDS |
| AGGAAGGTGGACCGTGGTAA+TGG | 0.469415 | 3.3:-61349072 | MS.gene008086:CDS |
| GGTAATGGAAAGGAGGATAC+TGG | 0.473524 | 3.3:-61349057 | MS.gene008086:CDS |
| GAAGGCCGGGAAGAAGGAAC+CGG | 0.476484 | 3.3:-61349178 | MS.gene008086:CDS |
| CTCCTCTACCGGCTTCGAAA+AGG | 0.495702 | 3.3:+61349284 | None:intergenic |
| GCGATAAGGTTCGGAGGTTG+AGG | 0.498254 | 3.3:-61349347 | MS.gene008086:CDS |
| AAAGCCGATAGATGCTTAGT+AGG | 0.500619 | 3.3:+61349423 | None:intergenic |
| TCAAACATTGTCTCCTCTAC+CGG | 0.506681 | 3.3:+61349273 | None:intergenic |
| TGGTGGGTCGTCTTTGACGG+CGG | 0.508266 | 3.3:+61349956 | None:intergenic |
| CGAGGAGAAGAACAAGAAGA+AGG | 0.508520 | 3.3:-61349574 | MS.gene008086:CDS |
| TTTGAGAATAAATGTAAGAG+TGG | 0.508621 | 3.3:-61349318 | MS.gene008086:CDS |
| CAAGAAGAAGGAGAAAGAGC+CGG | 0.511218 | 3.3:-61349562 | MS.gene008086:CDS |
| GTCGATCGAGGAATCAAAGA+AGG | 0.512248 | 3.3:-61348965 | MS.gene008086:CDS |
| TCGAAGAAGATTTGGGGTGG+TGG | 0.514670 | 3.3:-61349246 | MS.gene008086:CDS |
| GGGAAAGTTAATGGGAAGGC+CGG | 0.514683 | 3.3:-61349192 | MS.gene008086:CDS |
| TTAATGAAGGTGAAGAGAAT+GGG | 0.515992 | 3.3:-61349212 | MS.gene008086:CDS |
| TAATGGGAAGGCCGGGAAGA+AGG | 0.516314 | 3.3:-61349184 | MS.gene008086:CDS |
| CTTCTGCTGAATTGTTCTTG+GGG | 0.519445 | 3.3:+61349778 | None:intergenic |
| GGTTATAGATGTGGTGAAGA+GGG | 0.520148 | 3.3:-61348995 | MS.gene008086:CDS |
| AGATGTGGTGAAGAGGGGAG+TGG | 0.520696 | 3.3:-61348989 | MS.gene008086:CDS |
| GTTAATGAAGGTGAAGAGAA+TGG | 0.522303 | 3.3:-61349213 | MS.gene008086:CDS |
| GGAGCCTGATTCACCATTGG+TGG | 0.527617 | 3.3:-61349109 | MS.gene008086:CDS |
| AGATCTGGCAGGTGGTATGG+AGG | 0.532827 | 3.3:+61349656 | None:intergenic |
| GAAGGAGAAAGAGCCGGAGG+AGG | 0.534312 | 3.3:-61349556 | MS.gene008086:CDS |
| TTGATTTCACTGCCAAATCA+GGG | 0.541120 | 3.3:-61349452 | MS.gene008086:CDS |
| GTTTATGCAGAAAACTGAGT+TGG | 0.544369 | 3.3:-61348893 | MS.gene008086:CDS |
| GAAGAAACTTCATCAGAAGC+AGG | 0.546123 | 3.3:-61349894 | MS.gene008086:CDS |
| TGGGTCGTCTTTGACGGCGG+CGG | 0.548251 | 3.3:+61349959 | None:intergenic |
| CGGTTATAGATGTGGTGAAG+AGG | 0.554197 | 3.3:-61348996 | MS.gene008086:CDS |
| TTGAGAATAAATGTAAGAGT+GGG | 0.554852 | 3.3:-61349317 | MS.gene008086:CDS |
| TGATCCTACTAAGCATCTAT+CGG | 0.559423 | 3.3:-61349427 | MS.gene008086:CDS |
| GCAGAAAACTGAGTTGGCTA+AGG | 0.559486 | 3.3:-61348887 | MS.gene008086:CDS |
| ATGAGGTTGCAATTCTTCAA+GGG | 0.562519 | 3.3:-61349479 | MS.gene008086:CDS |
| GACAACTAAGAAATTGGTGA+TGG | 0.569729 | 3.3:-61349130 | MS.gene008086:CDS |
| GATCTGGCAGGTGGTATGGA+GGG | 0.572933 | 3.3:+61349657 | None:intergenic |
| GATGGAGCCTGATTCACCAT+TGG | 0.580880 | 3.3:-61349112 | MS.gene008086:CDS |
| GAAGAAGGAGAAAGAGCCGG+AGG | 0.582776 | 3.3:-61349559 | MS.gene008086:CDS |
| GGAAAGTTAATGGGAAGGCC+GGG | 0.583565 | 3.3:-61349191 | MS.gene008086:CDS |
| CGTTTGGTTCCAGATCTGGC+AGG | 0.590921 | 3.3:+61349645 | None:intergenic |
| GAAGCAGGTTCTTCATCTGA+AGG | 0.592880 | 3.3:-61349879 | MS.gene008086:CDS |
| CTTTCGAAGAAGATTTGGGG+TGG | 0.593102 | 3.3:-61349249 | MS.gene008086:CDS |
| GGTAAAGTTGATGTTAATGA+AGG | 0.597345 | 3.3:-61349225 | MS.gene008086:CDS |
| GTTATAGATGTGGTGAAGAG+GGG | 0.624491 | 3.3:-61348994 | MS.gene008086:CDS |
| CTAAGAAAGCAGCCGCAGCG+AGG | 0.632166 | 3.3:-61349152 | MS.gene008086:CDS |
| TTGGTTCCAGATCTGGCAGG+TGG | 0.633072 | 3.3:+61349648 | None:intergenic |
| GGTGGACCGTGGTAATGGAA+AGG | 0.637313 | 3.3:-61349067 | MS.gene008086:CDS |
| TATCCTCCTTTCCATTACCA+CGG | 0.639577 | 3.3:+61349061 | None:intergenic |
| GAGCTTTCGAAGAAGATTTG+GGG | 0.640229 | 3.3:-61349252 | MS.gene008086:CDS |
| GAATGGGAAAGTTAATGGGA+AGG | 0.645155 | 3.3:-61349196 | MS.gene008086:CDS |
| GAGGGGAGTGGAGTCGATCG+AGG | 0.647001 | 3.3:-61348977 | MS.gene008086:CDS |
| TTTGAAGGAAAATAGGAAGG+TGG | 0.647969 | 3.3:-61349085 | MS.gene008086:CDS |
| TCGATCGAGGAATCAAAGAA+GGG | 0.651934 | 3.3:-61348964 | MS.gene008086:CDS |
| GGACCGTGGTAATGGAAAGG+AGG | 0.655825 | 3.3:-61349064 | MS.gene008086:CDS |
| TTTCTTAGTTGTCCTCGCTG+CGG | 0.659586 | 3.3:+61349140 | None:intergenic |
| AATTGCGCGATAAGGTTCGG+AGG | 0.671494 | 3.3:-61349353 | MS.gene008086:CDS |
| GCAGGTTCTTCATCTGAAGG+AGG | 0.673317 | 3.3:-61349876 | MS.gene008086:CDS |
| TCTACCGGCTTCGAAAAGGT+AGG | 0.695810 | 3.3:+61349288 | None:intergenic |
| GAAAATAGGAAGGTGGACCG+TGG | 0.713258 | 3.3:-61349078 | MS.gene008086:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTGAGAATAAATGTAAGAGT+GGG | - | chr3.3:61349501-61349520 | MS.gene008086:CDS | 25.0% |
| ! | TTTGAGAATAAATGTAAGAG+TGG | - | chr3.3:61349500-61349519 | MS.gene008086:CDS | 25.0% |
| AAGAGAATGGGAAAGTTAAT+GGG | - | chr3.3:61349618-61349637 | MS.gene008086:CDS | 30.0% | |
| ATTGAACAAACCCTAAAATC+AGG | - | chr3.3:61349131-61349150 | MS.gene008086:CDS | 30.0% | |
| GAATAAAAAGAAAACAACCG+AGG | - | chr3.3:61349226-61349245 | MS.gene008086:CDS | 30.0% | |
| TAAGTACAGAATTGCTGAAA+TGG | - | chr3.3:61349898-61349917 | MS.gene008086:CDS | 30.0% | |
| TTAATGAAGGTGAAGAGAAT+GGG | - | chr3.3:61349606-61349625 | MS.gene008086:CDS | 30.0% | |
| ! | TGAAATGATTCATTTTGAGC+CGG | - | chr3.3:61349802-61349821 | MS.gene008086:CDS | 30.0% |
| !! | ATTCAATGCATCCCTTATTT+TGG | + | chr3.3:61349966-61349985 | None:intergenic | 30.0% |
| !! | GGTAAAGTTGATGTTAATGA+AGG | - | chr3.3:61349593-61349612 | MS.gene008086:CDS | 30.0% |
| !!! | GAACTGACTTTTTCACAATT+TGG | + | chr3.3:61349424-61349443 | None:intergenic | 30.0% |
| !!! | GATTTTAGGGTTTGTTCAAT+GGG | + | chr3.3:61349131-61349150 | None:intergenic | 30.0% |
| !!! | TGATTTTAGGGTTTGTTCAA+TGG | + | chr3.3:61349132-61349151 | None:intergenic | 30.0% |
| AGGAAACAGCTACCAAAATA+AGG | - | chr3.3:61349951-61349970 | MS.gene008086:CDS | 35.0% | |
| ATCTTCTGCTGAATTGTTCT+TGG | + | chr3.3:61349045-61349064 | None:intergenic | 35.0% | |
| ATGAGGTTGCAATTCTTCAA+GGG | - | chr3.3:61349339-61349358 | MS.gene008086:CDS | 35.0% | |
| GAAGAGAATGGGAAAGTTAA+TGG | - | chr3.3:61349617-61349636 | MS.gene008086:CDS | 35.0% | |
| GACAACTAAGAAATTGGTGA+TGG | - | chr3.3:61349688-61349707 | MS.gene008086:CDS | 35.0% | |
| GGAAACAGCTACCAAAATAA+GGG | - | chr3.3:61349952-61349971 | MS.gene008086:CDS | 35.0% | |
| GTTAATGAAGGTGAAGAGAA+TGG | - | chr3.3:61349605-61349624 | MS.gene008086:CDS | 35.0% | |
| GTTTATGCAGAAAACTGAGT+TGG | - | chr3.3:61349925-61349944 | MS.gene008086:CDS | 35.0% | |
| TCTTCTGCTGAATTGTTCTT+GGG | + | chr3.3:61349044-61349063 | None:intergenic | 35.0% | |
| TGAGCTTTCGAAGAAGATTT+GGG | - | chr3.3:61349565-61349584 | MS.gene008086:CDS | 35.0% | |
| TGATCCTACTAAGCATCTAT+CGG | - | chr3.3:61349391-61349410 | MS.gene008086:CDS | 35.0% | |
| TTGAGCTTTCGAAGAAGATT+TGG | - | chr3.3:61349564-61349583 | MS.gene008086:CDS | 35.0% | |
| TTGATTTCACTGCCAAATCA+GGG | - | chr3.3:61349366-61349385 | MS.gene008086:CDS | 35.0% | |
| TTTGAAGGAAAATAGGAAGG+TGG | - | chr3.3:61349733-61349752 | MS.gene008086:CDS | 35.0% | |
| ! | TGTTCGATTTTGTCTTCTTG+CGG | + | chr3.3:61348888-61348907 | None:intergenic | 35.0% |
| ! | TTTTCCTTCAAAACCACCAA+TGG | + | chr3.3:61349725-61349744 | None:intergenic | 35.0% |
| !! | AGGTGGATTTTGTTCTTCTT+CGG | + | chr3.3:61348991-61349010 | None:intergenic | 35.0% |
| !!! | GGTTTTGAAGGAAAATAGGA+AGG | - | chr3.3:61349730-61349749 | MS.gene008086:CDS | 35.0% |
| !!! | TGGTGGTTTTGAAGGAAAAT+AGG | - | chr3.3:61349726-61349745 | MS.gene008086:CDS | 35.0% |
| !!! | TGTTCAATGGGTTTGGTTTT+TGG | + | chr3.3:61349119-61349138 | None:intergenic | 35.0% |
| AAAACCACCAATGGTGAATC+AGG | + | chr3.3:61349716-61349735 | None:intergenic | 40.0% | |
| AAAGCCGATAGATGCTTAGT+AGG | + | chr3.3:61349398-61349417 | None:intergenic | 40.0% | |
| AGCGAGGACAACTAAGAAAT+TGG | - | chr3.3:61349682-61349701 | MS.gene008086:CDS | 40.0% | |
| AGTAGGATCATTCCCTGATT+TGG | + | chr3.3:61349381-61349400 | None:intergenic | 40.0% | |
| ATCAATTGCGCGATAAGGTT+CGG | - | chr3.3:61349462-61349481 | MS.gene008086:CDS | 40.0% | |
| CTCTTCACCACATCTATAAC+CGG | + | chr3.3:61349824-61349843 | None:intergenic | 40.0% | |
| CTTCTGCTGAATTGTTCTTG+GGG | + | chr3.3:61349043-61349062 | None:intergenic | 40.0% | |
| CTTCTTCTTGTTCTTCTCCT+CGG | + | chr3.3:61349246-61349265 | None:intergenic | 40.0% | |
| GAAGAAACTTCATCAGAAGC+AGG | - | chr3.3:61348924-61348943 | MS.gene008086:CDS | 40.0% | |
| GAATGGGAAAGTTAATGGGA+AGG | - | chr3.3:61349622-61349641 | MS.gene008086:CDS | 40.0% | |
| GAGCTTTCGAAGAAGATTTG+GGG | - | chr3.3:61349566-61349585 | MS.gene008086:CDS | 40.0% | |
| GATGAGGTTGCAATTCTTCA+AGG | - | chr3.3:61349338-61349357 | MS.gene008086:CDS | 40.0% | |
| GGAATCAAAGAAGGGTGAAT+TGG | - | chr3.3:61349862-61349881 | MS.gene008086:CDS | 40.0% | |
| GGTTATAGATGTGGTGAAGA+GGG | - | chr3.3:61349823-61349842 | MS.gene008086:CDS | 40.0% | |
| GTTATAGATGTGGTGAAGAG+GGG | - | chr3.3:61349824-61349843 | MS.gene008086:CDS | 40.0% | |
| TATCCTCCTTTCCATTACCA+CGG | + | chr3.3:61349760-61349779 | None:intergenic | 40.0% | |
| TCAAACATTGTCTCCTCTAC+CGG | + | chr3.3:61349548-61349567 | None:intergenic | 40.0% | |
| TCGATCGAGGAATCAAAGAA+GGG | - | chr3.3:61349854-61349873 | MS.gene008086:CDS | 40.0% | |
| ! | GTCGTTTCAGAGAGTTTTCA+CGG | - | chr3.3:61349310-61349329 | MS.gene008086:CDS | 40.0% |
| ! | GTTGATTTCACTGCCAAATC+AGG | - | chr3.3:61349365-61349384 | MS.gene008086:CDS | 40.0% |
| ! | TAGGGTTTGTTCAATGGGTT+TGG | + | chr3.3:61349126-61349145 | None:intergenic | 40.0% |
| ! | TTGTTATTGTCATCCTCCTC+CGG | + | chr3.3:61349278-61349297 | None:intergenic | 40.0% |
| ! | TTTTGAGCCGGTTATAGATG+TGG | - | chr3.3:61349814-61349833 | MS.gene008086:CDS | 40.0% |
| !! | AGGGTTTGGTTCCTGATTTT+AGG | + | chr3.3:61349145-61349164 | None:intergenic | 40.0% |
| !! | GGGTTTGGTTCCTGATTTTA+GGG | + | chr3.3:61349144-61349163 | None:intergenic | 40.0% |
| !!! | TCAATGGGTTTGGTTTTTGG+AGG | + | chr3.3:61349116-61349135 | None:intergenic | 40.0% |
| !!! | TTCACCATTGGTGGTTTTGA+AGG | - | chr3.3:61349718-61349737 | MS.gene008086:CDS | 40.0% |
| !!! | TTGTTCTTGGGGTTGGTTTT+CGG | + | chr3.3:61349032-61349051 | None:intergenic | 40.0% |
| CAAGAAGAAGGAGAAAGAGC+CGG | - | chr3.3:61349256-61349275 | MS.gene008086:CDS | 45.0% | |
| CGAGGAGAAGAACAAGAAGA+AGG | - | chr3.3:61349244-61349263 | MS.gene008086:CDS | 45.0% | |
| CGGTTATAGATGTGGTGAAG+AGG | - | chr3.3:61349822-61349841 | MS.gene008086:CDS | 45.0% | |
| CTTTCGAAGAAGATTTGGGG+TGG | - | chr3.3:61349569-61349588 | MS.gene008086:CDS | 45.0% | |
| GAAGCAGGTTCTTCATCTGA+AGG | - | chr3.3:61348939-61348958 | MS.gene008086:CDS | 45.0% | |
| GCTTGATCAATTGCGCGATA+AGG | - | chr3.3:61349457-61349476 | MS.gene008086:CDS | 45.0% | |
| GTCGATCGAGGAATCAAAGA+AGG | - | chr3.3:61349853-61349872 | MS.gene008086:CDS | 45.0% | |
| TGCTGAATTGTTCTTGGGGT+TGG | + | chr3.3:61349039-61349058 | None:intergenic | 45.0% | |
| TTTCTTAGTTGTCCTCGCTG+CGG | + | chr3.3:61349681-61349700 | None:intergenic | 45.0% | |
| ! | AGTTTTCACGGAGGATGATG+AGG | - | chr3.3:61349322-61349341 | MS.gene008086:CDS | 45.0% |
| ! | ATTTTGTCTTCTTGCGGTGG+TGG | + | chr3.3:61348882-61348901 | None:intergenic | 45.0% |
| ! | GCAGAAAACTGAGTTGGCTA+AGG | - | chr3.3:61349931-61349950 | MS.gene008086:CDS | 45.0% |
| ! | GTTTCAGAGAGTTTTCACGG+AGG | - | chr3.3:61349313-61349332 | MS.gene008086:CDS | 45.0% |
| ! | TCGATTTTGTCTTCTTGCGG+TGG | + | chr3.3:61348885-61348904 | None:intergenic | 45.0% |
| ! | TTTTGTCTTCTTGCGGTGGT+GGG | + | chr3.3:61348881-61348900 | None:intergenic | 45.0% |
| !! | GGAGGATACTGGTTTGAGTT+TGG | - | chr3.3:61349772-61349791 | MS.gene008086:CDS | 45.0% |
| !! | GGTAATGGAAAGGAGGATAC+TGG | - | chr3.3:61349761-61349780 | MS.gene008086:CDS | 45.0% |
| !! | GTTGTTTTCAGCAGGACGTT+TGG | + | chr3.3:61349192-61349211 | None:intergenic | 45.0% |
| !! | TTCGGAGGTGGAGTTGTTTT+TGG | + | chr3.3:61349014-61349033 | None:intergenic | 45.0% |
| !!! | ATGGGTTTGGTTTTTGGAGG+AGG | + | chr3.3:61349113-61349132 | None:intergenic | 45.0% |
| AATTGCGCGATAAGGTTCGG+AGG | - | chr3.3:61349465-61349484 | MS.gene008086:CDS | 50.0% | |
| GAAAATAGGAAGGTGGACCG+TGG | - | chr3.3:61349740-61349759 | MS.gene008086:CDS | 50.0% | |
| GATGGAGCCTGATTCACCAT+TGG | - | chr3.3:61349706-61349725 | MS.gene008086:CDS | 50.0% | |
| GCAGGTTCTTCATCTGAAGG+AGG | - | chr3.3:61348942-61348961 | MS.gene008086:CDS | 50.0% | |
| GGAAAGTTAATGGGAAGGCC+GGG | - | chr3.3:61349627-61349646 | MS.gene008086:CDS | 50.0% | |
| GGGAAAGTTAATGGGAAGGC+CGG | - | chr3.3:61349626-61349645 | MS.gene008086:CDS | 50.0% | |
| ! | AGGACGTTTGGTTCCAGATC+TGG | + | chr3.3:61349180-61349199 | None:intergenic | 50.0% |
| ! | GACTCCTACCTTTTCGAAGC+CGG | - | chr3.3:61349526-61349545 | MS.gene008086:CDS | 50.0% |
| ! | TACCTTTTCGAAGCCGGTAG+AGG | - | chr3.3:61349532-61349551 | MS.gene008086:CDS | 50.0% |
| ! | TCGAAGAAGATTTGGGGTGG+TGG | - | chr3.3:61349572-61349591 | MS.gene008086:CDS | 50.0% |
| !! | TCTACCGGCTTCGAAAAGGT+AGG | + | chr3.3:61349533-61349552 | None:intergenic | 50.0% |
| !! | TTCGCGTCGTTGTTTTCAGC+AGG | + | chr3.3:61349200-61349219 | None:intergenic | 50.0% |
| !!! | GGAGGTGGAGTTGTTTTTGG+AGG | + | chr3.3:61349011-61349030 | None:intergenic | 50.0% |
| !!! | GGTGGAGTTGTTTTTGGAGG+TGG | + | chr3.3:61349008-61349027 | None:intergenic | 50.0% |
| !!! | TTCTTGGGGTTGGTTTTCGG+AGG | + | chr3.3:61349029-61349048 | None:intergenic | 50.0% |
| AGATCTGGCAGGTGGTATGG+AGG | + | chr3.3:61349165-61349184 | None:intergenic | 55.0% | |
| AGATGTGGTGAAGAGGGGAG+TGG | - | chr3.3:61349829-61349848 | MS.gene008086:CDS | 55.0% | |
| AGGAAGGTGGACCGTGGTAA+TGG | - | chr3.3:61349746-61349765 | MS.gene008086:CDS | 55.0% | |
| GAAGAAGGAGAAAGAGCCGG+AGG | - | chr3.3:61349259-61349278 | MS.gene008086:CDS | 55.0% | |
| GATCTGGCAGGTGGTATGGA+GGG | + | chr3.3:61349164-61349183 | None:intergenic | 55.0% | |
| GCGATAAGGTTCGGAGGTTG+AGG | - | chr3.3:61349471-61349490 | MS.gene008086:CDS | 55.0% | |
| GGAGCCTGATTCACCATTGG+TGG | - | chr3.3:61349709-61349728 | MS.gene008086:CDS | 55.0% | |
| TAATGGGAAGGCCGGGAAGA+AGG | - | chr3.3:61349634-61349653 | MS.gene008086:CDS | 55.0% | |
| TCCAGATCTGGCAGGTGGTA+TGG | + | chr3.3:61349168-61349187 | None:intergenic | 55.0% | |
| TCCATACCACCTGCCAGATC+TGG | - | chr3.3:61349164-61349183 | MS.gene008086:CDS | 55.0% | |
| TTGGTTCCAGATCTGGCAGG+TGG | + | chr3.3:61349173-61349192 | None:intergenic | 55.0% | |
| ! | CGTTTGGTTCCAGATCTGGC+AGG | + | chr3.3:61349176-61349195 | None:intergenic | 55.0% |
| !! | CTCCTCTACCGGCTTCGAAA+AGG | + | chr3.3:61349537-61349556 | None:intergenic | 55.0% |
| !! | GGACCGTGGTAATGGAAAGG+AGG | - | chr3.3:61349754-61349773 | MS.gene008086:CDS | 55.0% |
| !! | GGTGGACCGTGGTAATGGAA+AGG | - | chr3.3:61349751-61349770 | MS.gene008086:CDS | 55.0% |
| !!! | TTGGGGTTGGTTTTCGGAGG+TGG | + | chr3.3:61349026-61349045 | None:intergenic | 55.0% |
| CTAAGAAAGCAGCCGCAGCG+AGG | - | chr3.3:61349666-61349685 | MS.gene008086:CDS | 60.0% | |
| GAAGGAGAAAGAGCCGGAGG+AGG | - | chr3.3:61349262-61349281 | MS.gene008086:CDS | 60.0% | |
| GAAGGCCGGGAAGAAGGAAC+CGG | - | chr3.3:61349640-61349659 | MS.gene008086:CDS | 60.0% | |
| GGCAGGTGGTATGGAGGGTT+TGG | + | chr3.3:61349159-61349178 | None:intergenic | 60.0% | |
| ! | AGCAGCCGGTTCCTTCTTCC+CGG | + | chr3.3:61349648-61349667 | None:intergenic | 60.0% |
| ! | GCGGCTGCTTTCTTAGCAGC+CGG | + | chr3.3:61349662-61349681 | None:intergenic | 60.0% |
| ! | TGGTGGGTCGTCTTTGACGG+CGG | + | chr3.3:61348865-61348884 | None:intergenic | 60.0% |
| !! | CGGTGGTGGGTCGTCTTTGA+CGG | + | chr3.3:61348868-61348887 | None:intergenic | 60.0% |
| GAGGGGAGTGGAGTCGATCG+AGG | - | chr3.3:61349841-61349860 | MS.gene008086:CDS | 65.0% | |
| TGGGTCGTCTTTGACGGCGG+CGG | + | chr3.3:61348862-61348881 | None:intergenic | 65.0% | |
| GTCGTCTTTGACGGCGGCGG+TGG | + | chr3.3:61348859-61348878 | None:intergenic | 70.0% | |
| GTCTTTGACGGCGGCGGTGG+CGG | + | chr3.3:61348856-61348875 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 61348837 | 61350003 | 61348837 | ID=MS.gene008086 |
| chr3.3 | mRNA | 61348837 | 61350003 | 61348837 | ID=MS.gene008086.t1;Parent=MS.gene008086 |
| chr3.3 | exon | 61348837 | 61350003 | 61348837 | ID=MS.gene008086.t1.exon1;Parent=MS.gene008086.t1 |
| chr3.3 | CDS | 61348837 | 61350003 | 61348837 | ID=cds.MS.gene008086.t1;Parent=MS.gene008086.t1 |
| Gene Sequence |
| Protein sequence |
