Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008169.t1 | XP_024632961.1 | 84.9 | 800 | 93 | 4 | 1 | 772 | 1 | 800 | 0.00E+00 | 1357.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008169.t1 | Q9SZL8 | 27.0 | 636 | 394 | 11 | 32 | 665 | 70 | 637 | 5.7e-64 | 247.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008169.t1 | D3YBB9 | 77.0 | 774 | 158 | 4 | 1 | 764 | 49 | 812 | 0.0e+00 | 1196.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene008169.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008169.t1 | MTR_0558s0020 | 87.838 | 296 | 35 | 1 | 1 | 295 | 1 | 296 | 0.0 | 550 |
MS.gene008169.t1 | MTR_1g083640 | 83.451 | 284 | 31 | 1 | 1 | 268 | 1 | 284 | 6.54e-173 | 498 |
MS.gene008169.t1 | MTR_8g446020 | 73.898 | 295 | 38 | 1 | 1 | 295 | 1 | 256 | 2.20e-152 | 444 |
MS.gene008169.t1 | MTR_6g090505 | 83.966 | 237 | 38 | 0 | 65 | 301 | 1 | 237 | 6.10e-143 | 425 |
MS.gene008169.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 396 | 495 | 230 | 306 | 3.66e-34 | 135 |
MS.gene008169.t1 | MTR_6g090505 | 75.510 | 49 | 12 | 0 | 567 | 615 | 314 | 362 | 9.10e-11 | 64.7 |
MS.gene008169.t1 | MTR_2g014100 | 82.449 | 245 | 34 | 1 | 1 | 236 | 1 | 245 | 5.67e-142 | 418 |
MS.gene008169.t1 | MTR_0337s0040 | 72.031 | 261 | 33 | 2 | 1 | 260 | 1 | 222 | 4.73e-124 | 371 |
MS.gene008169.t1 | MTR_3g008240 | 84.729 | 203 | 30 | 1 | 1 | 202 | 1 | 203 | 1.96e-118 | 355 |
MS.gene008169.t1 | MTR_4g040430 | 84.158 | 202 | 28 | 1 | 1 | 202 | 1 | 198 | 5.59e-118 | 354 |
MS.gene008169.t1 | MTR_0337s0060 | 58.861 | 316 | 30 | 4 | 447 | 759 | 21 | 239 | 1.45e-108 | 331 |
MS.gene008169.t1 | MTR_5g071590 | 73.889 | 180 | 34 | 2 | 1 | 167 | 1 | 180 | 7.69e-90 | 280 |
MS.gene008169.t1 | MTR_1g055240 | 88.028 | 142 | 17 | 0 | 91 | 232 | 3 | 144 | 7.70e-87 | 271 |
MS.gene008169.t1 | MTR_0019s0290 | 82.237 | 152 | 27 | 0 | 82 | 233 | 9 | 160 | 6.17e-86 | 269 |
MS.gene008169.t1 | MTR_3g028680 | 81.013 | 158 | 27 | 1 | 618 | 772 | 1 | 158 | 6.20e-84 | 265 |
MS.gene008169.t1 | MTR_2g067090 | 78.065 | 155 | 31 | 1 | 621 | 772 | 99 | 253 | 3.16e-75 | 246 |
MS.gene008169.t1 | MTR_4g133495 | 62.088 | 182 | 43 | 2 | 576 | 754 | 88 | 246 | 4.13e-66 | 221 |
MS.gene008169.t1 | MTR_4g133340 | 62.088 | 182 | 43 | 2 | 576 | 754 | 88 | 246 | 4.13e-66 | 221 |
MS.gene008169.t1 | MTR_1281s0010 | 81.651 | 109 | 20 | 0 | 19 | 127 | 1 | 109 | 6.07e-57 | 190 |
MS.gene008169.t1 | MTR_6g051425 | 32.075 | 318 | 185 | 6 | 40 | 341 | 22 | 324 | 1.19e-38 | 147 |
MS.gene008169.t1 | MTR_4g008820 | 83.750 | 80 | 12 | 1 | 1 | 79 | 125 | 204 | 1.78e-31 | 131 |
MS.gene008169.t1 | MTR_8g046060 | 77.273 | 88 | 11 | 2 | 1 | 79 | 91 | 178 | 3.66e-31 | 122 |
MS.gene008169.t1 | MTR_2g067130 | 62.963 | 81 | 24 | 2 | 695 | 772 | 46 | 123 | 5.38e-22 | 93.6 |
MS.gene008169.t1 | MTR_1g070355 | 26.852 | 324 | 216 | 6 | 41 | 362 | 80 | 384 | 2.47e-19 | 92.8 |
MS.gene008169.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 49 | 233 | 40 | 205 | 2.07e-14 | 77.0 |
MS.gene008169.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 1.48e-13 | 67.0 |
MS.gene008169.t1 | MTR_4g035820 | 22.414 | 290 | 192 | 7 | 17 | 299 | 61 | 324 | 7.76e-13 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008169.t1 | AT4G38180 | 27.769 | 641 | 383 | 13 | 32 | 665 | 70 | 637 | 1.18e-70 | 247 |
MS.gene008169.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.13e-59 | 216 |
MS.gene008169.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.13e-59 | 216 |
MS.gene008169.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.13e-59 | 216 |
MS.gene008169.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.13e-59 | 216 |
MS.gene008169.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.13e-59 | 216 |
MS.gene008169.t1 | AT2G27110 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 1.04e-53 | 200 |
MS.gene008169.t1 | AT2G27110 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 1.04e-53 | 200 |
MS.gene008169.t1 | AT2G27110 | 27.308 | 509 | 313 | 11 | 213 | 719 | 36 | 489 | 5.23e-53 | 196 |
MS.gene008169.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 4.47e-52 | 194 |
MS.gene008169.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 4.47e-52 | 194 |
MS.gene008169.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 4.47e-52 | 194 |
MS.gene008169.t1 | AT1G76320 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 2.94e-50 | 187 |
MS.gene008169.t1 | AT1G76320 | 24.332 | 674 | 418 | 17 | 50 | 719 | 12 | 597 | 1.22e-49 | 187 |
MS.gene008169.t1 | AT1G76320 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.45e-49 | 186 |
MS.gene008169.t1 | AT1G76320 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.45e-49 | 186 |
MS.gene008169.t1 | AT3G22170 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 8.68e-48 | 182 |
MS.gene008169.t1 | AT3G22170 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 8.68e-48 | 182 |
MS.gene008169.t1 | AT5G18960 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 1.99e-46 | 178 |
MS.gene008169.t1 | AT5G18960 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 1.99e-46 | 178 |
MS.gene008169.t1 | AT4G38170 | 24.532 | 481 | 295 | 13 | 235 | 703 | 24 | 448 | 8.50e-44 | 167 |
MS.gene008169.t1 | AT1G10240 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 5.94e-42 | 163 |
MS.gene008169.t1 | AT1G10240 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 5.94e-42 | 163 |
MS.gene008169.t1 | AT5G28530 | 24.100 | 639 | 388 | 17 | 40 | 660 | 60 | 619 | 7.62e-42 | 163 |
MS.gene008169.t1 | AT5G28530 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 7.13e-41 | 160 |
MS.gene008169.t1 | AT5G28530 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 7.13e-41 | 160 |
MS.gene008169.t1 | AT2G32250 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.13e-39 | 157 |
MS.gene008169.t1 | AT2G32250 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.50e-39 | 157 |
MS.gene008169.t1 | AT2G32250 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.50e-39 | 157 |
MS.gene008169.t1 | AT2G32250 | 23.758 | 745 | 431 | 21 | 4 | 743 | 10 | 622 | 1.80e-39 | 157 |
MS.gene008169.t1 | AT2G32250 | 23.758 | 745 | 431 | 21 | 4 | 743 | 10 | 622 | 1.80e-39 | 157 |
MS.gene008169.t1 | AT2G32250 | 23.758 | 745 | 431 | 21 | 4 | 743 | 10 | 622 | 1.80e-39 | 157 |
MS.gene008169.t1 | AT2G32250 | 23.588 | 708 | 407 | 18 | 41 | 743 | 3 | 581 | 7.26e-39 | 155 |
MS.gene008169.t1 | AT2G32250 | 23.588 | 708 | 407 | 18 | 41 | 743 | 3 | 581 | 8.55e-39 | 154 |
MS.gene008169.t1 | AT1G80010 | 23.758 | 644 | 386 | 23 | 41 | 662 | 101 | 661 | 3.41e-36 | 146 |
MS.gene008169.t1 | AT1G52520 | 22.080 | 625 | 407 | 16 | 41 | 662 | 91 | 638 | 1.77e-33 | 138 |
MS.gene008169.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 2.45e-27 | 119 |
MS.gene008169.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 2.10e-12 | 71.2 |
MS.gene008169.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 2.76e-27 | 119 |
MS.gene008169.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 2.44e-12 | 71.2 |
MS.gene008169.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.78e-27 | 119 |
MS.gene008169.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.29e-12 | 71.2 |
MS.gene008169.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.78e-27 | 119 |
MS.gene008169.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.29e-12 | 71.2 |
MS.gene008169.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.83e-27 | 119 |
MS.gene008169.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.35e-12 | 71.2 |
MS.gene008169.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.95e-27 | 118 |
MS.gene008169.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.28e-12 | 71.2 |
MS.gene008169.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.95e-27 | 118 |
MS.gene008169.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.28e-12 | 71.2 |
MS.gene008169.t1 | AT5G28530 | 21.781 | 629 | 352 | 20 | 40 | 660 | 60 | 556 | 1.53e-22 | 103 |
MS.gene008169.t1 | AT5G28530 | 21.622 | 629 | 349 | 21 | 40 | 660 | 60 | 552 | 7.44e-22 | 101 |
Find 116 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 3.4:-69033007 | MS.gene008169:CDS |
TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 3.4:-69033316 | MS.gene008169:CDS |
AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 3.4:+69032181 | None:intergenic |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 3.4:-69033049 | MS.gene008169:CDS |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 3.4:-69034100 | MS.gene008169:CDS |
TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 3.4:-69033597 | MS.gene008169:intron |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 3.4:-69033564 | MS.gene008169:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 3.4:+69033470 | None:intergenic |
TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 3.4:+69032187 | None:intergenic |
AATCAGATTTCGACTACAAT+TGG | 0.318540 | 3.4:-69033275 | MS.gene008169:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 3.4:-69032335 | MS.gene008169:CDS |
ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 3.4:+69033452 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 3.4:+69034050 | None:intergenic |
GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 3.4:-69032752 | MS.gene008169:CDS |
TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 3.4:-69033175 | MS.gene008169:CDS |
CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 3.4:-69032343 | MS.gene008169:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 3.4:-69034043 | MS.gene008169:intron |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 3.4:-69034051 | MS.gene008169:CDS |
GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 3.4:-69033176 | MS.gene008169:CDS |
GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 3.4:+69032459 | None:intergenic |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 3.4:+69034580 | None:intergenic |
AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 3.4:-69032195 | MS.gene008169:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 3.4:+69032205 | None:intergenic |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 3.4:-69032875 | MS.gene008169:CDS |
GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 3.4:-69032310 | MS.gene008169:CDS |
TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 3.4:-69034809 | MS.gene008169:CDS |
CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 3.4:-69032627 | MS.gene008169:CDS |
GATTATGATCTTCAAACCTT+GGG | 0.413114 | 3.4:+69032704 | None:intergenic |
ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 3.4:-69034738 | MS.gene008169:CDS |
CGATTATGATCTTCAAACCT+TGG | 0.425681 | 3.4:+69032703 | None:intergenic |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 3.4:-69034403 | MS.gene008169:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 3.4:-69034521 | MS.gene008169:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 3.4:+69033459 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 3.4:-69034538 | MS.gene008169:CDS |
CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 3.4:+69032526 | None:intergenic |
CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | 3.4:-69034655 | MS.gene008169:CDS |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 3.4:-69034373 | MS.gene008169:CDS |
ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 3.4:-69034884 | MS.gene008169:CDS |
TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 3.4:-69033385 | MS.gene008169:CDS |
GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 3.4:-69033221 | MS.gene008169:CDS |
ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 3.4:-69032626 | MS.gene008169:CDS |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 3.4:-69034689 | MS.gene008169:CDS |
GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 3.4:-69032669 | MS.gene008169:CDS |
GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 3.4:-69034328 | MS.gene008169:CDS |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 3.4:+69032873 | None:intergenic |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 3.4:+69034544 | None:intergenic |
TTTAATTATGCATATAACAC+TGG | 0.485542 | 3.4:-69034751 | MS.gene008169:CDS |
CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 3.4:-69032234 | MS.gene008169:CDS |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 3.4:-69034260 | MS.gene008169:CDS |
CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 3.4:+69034433 | None:intergenic |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 3.4:-69034695 | MS.gene008169:CDS |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 3.4:-69032859 | MS.gene008169:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 3.4:+69033584 | None:intergenic |
ATCAGATTTCGACTACAATT+GGG | 0.491708 | 3.4:-69033274 | MS.gene008169:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 3.4:-69034247 | MS.gene008169:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 3.4:-69033035 | MS.gene008169:CDS |
GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 3.4:+69032955 | None:intergenic |
GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 3.4:-69034341 | MS.gene008169:CDS |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 3.4:+69034155 | None:intergenic |
GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 3.4:-69032235 | MS.gene008169:CDS |
AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 3.4:+69034445 | None:intergenic |
CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 3.4:-69033188 | MS.gene008169:CDS |
ATCATAATCGACTTGATGAA+AGG | 0.507955 | 3.4:-69032690 | MS.gene008169:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 3.4:+69034289 | None:intergenic |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 3.4:-69033016 | MS.gene008169:CDS |
ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 3.4:-69033170 | MS.gene008169:CDS |
TGTCTATAAGATATATAAGT+GGG | 0.514682 | 3.4:-69034485 | MS.gene008169:CDS |
GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 3.4:+69032710 | None:intergenic |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 3.4:+69033067 | None:intergenic |
TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 3.4:-69034644 | MS.gene008169:CDS |
TCATAATCGACTTGATGAAA+GGG | 0.526860 | 3.4:-69032689 | MS.gene008169:CDS |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 3.4:+69032878 | None:intergenic |
AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 3.4:-69032670 | MS.gene008169:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 3.4:+69033072 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 3.4:-69032858 | MS.gene008169:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 3.4:-69034643 | MS.gene008169:CDS |
CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 3.4:-69034819 | MS.gene008169:CDS |
ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 3.4:+69033439 | None:intergenic |
CTGAAATCCACCATGAATGT+TGG | 0.557140 | 3.4:-69032469 | MS.gene008169:CDS |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 3.4:-69034193 | MS.gene008169:CDS |
TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 3.4:-69034860 | MS.gene008169:CDS |
GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 3.4:-69034325 | MS.gene008169:CDS |
TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 3.4:-69032383 | MS.gene008169:CDS |
ATGTCTATAAGATATATAAG+TGG | 0.572287 | 3.4:-69034486 | MS.gene008169:CDS |
GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 3.4:+69032954 | None:intergenic |
TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 3.4:+69032223 | None:intergenic |
TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 3.4:+69032933 | None:intergenic |
ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 3.4:-69034895 | MS.gene008169:CDS |
TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 3.4:-69034334 | MS.gene008169:CDS |
TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 3.4:-69032342 | MS.gene008169:CDS |
ACCATATACACAGACCAGGC+TGG | 0.590176 | 3.4:-69033453 | MS.gene008169:CDS |
ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 3.4:-69032347 | MS.gene008169:CDS |
TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 3.4:-69032720 | MS.gene008169:CDS |
TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 3.4:+69032267 | None:intergenic |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 3.4:-69034254 | MS.gene008169:CDS |
AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 3.4:-69034340 | MS.gene008169:CDS |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 3.4:-69034251 | MS.gene008169:CDS |
ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 3.4:-69032380 | MS.gene008169:CDS |
ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 3.4:-69032957 | MS.gene008169:CDS |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 3.4:-69032872 | MS.gene008169:CDS |
TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | 3.4:+69032435 | None:intergenic |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 3.4:+69034595 | None:intergenic |
AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 3.4:+69033219 | None:intergenic |
GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 3.4:-69034320 | MS.gene008169:CDS |
ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 3.4:+69032705 | None:intergenic |
GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 3.4:-69033384 | MS.gene008169:CDS |
TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 3.4:+69032462 | None:intergenic |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 3.4:-69033034 | MS.gene008169:CDS |
GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 3.4:+69032484 | None:intergenic |
TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 3.4:+69032913 | None:intergenic |
GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 3.4:-69032358 | MS.gene008169:CDS |
CATGTCGACATAAGAAACCC+CGG | 0.663279 | 3.4:+69032608 | None:intergenic |
TCAAACCATATACACAGACC+AGG | 0.671057 | 3.4:-69033457 | MS.gene008169:CDS |
TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 3.4:-69032625 | MS.gene008169:CDS |
ATGTTGATAATGATAATGAG+AGG | 0.683310 | 3.4:-69032774 | MS.gene008169:CDS |
TGTTGATAATGATAATGAGA+GGG | 0.689129 | 3.4:-69032773 | MS.gene008169:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACCATAATTATAGTTTAA+TGG | + | chr3.4:69034668-69034687 | None:intergenic | 15.0% |
!! | AAACCATTAAACTATAATTA+TGG | - | chr3.4:69034662-69034681 | MS.gene008169:CDS | 15.0% |
!!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr3.4:69034421-69034440 | MS.gene008169:CDS | 15.0% |
!! | ATGTCTATAAGATATATAAG+TGG | - | chr3.4:69031990-69032009 | MS.gene008169:intron | 20.0% |
!! | CAATTCACAAAATAAGAAAT+CGG | - | chr3.4:69031781-69031800 | MS.gene008169:intron | 20.0% |
!! | TGTCTATAAGATATATAAGT+GGG | - | chr3.4:69031991-69032010 | MS.gene008169:intron | 20.0% |
!! | TTTAATTATGCATATAACAC+TGG | - | chr3.4:69031725-69031744 | MS.gene008169:intron | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr3.4:69032608-69032627 | MS.gene008169:CDS | 20.0% |
!!! | ACGCATTTATTACTATATTT+TGG | - | chr3.4:69034592-69034611 | MS.gene008169:CDS | 20.0% |
!!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr3.4:69033230-69033249 | MS.gene008169:CDS | 20.0% |
!!! | CTATACATTTTCACATTTTT+TGG | - | chr3.4:69034564-69034583 | MS.gene008169:CDS | 20.0% |
!!! | TGAATGTTTATATTGATTGA+AGG | - | chr3.4:69032580-69032599 | MS.gene008169:CDS | 20.0% |
! | AAAACACCTTGAAAAACATT+CGG | + | chr3.4:69033068-69033087 | None:intergenic | 25.0% |
! | AAACCAAATTAACAGTCTAA+TGG | + | chr3.4:69034625-69034644 | None:intergenic | 25.0% |
! | AAACCATTAGACTGTTAATT+TGG | - | chr3.4:69034619-69034638 | MS.gene008169:CDS | 25.0% |
! | AATTCTTGATTGTTATGCAT+TGG | - | chr3.4:69034519-69034538 | MS.gene008169:CDS | 25.0% |
! | ACAAAATAAGAAATCGGATA+AGG | - | chr3.4:69031787-69031806 | MS.gene008169:intron | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | - | chr3.4:69032425-69032444 | MS.gene008169:CDS | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | + | chr3.4:69032451-69032470 | None:intergenic | 25.0% |
! | CATAATAGTATTTGAAGGAA+AGG | + | chr3.4:69033601-69033620 | None:intergenic | 25.0% |
! | CATTTAGTGATAAAGAATCA+TGG | - | chr3.4:69031657-69031676 | MS.gene008169:intron | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | - | chr3.4:69033427-69033446 | MS.gene008169:CDS | 25.0% |
! | TGAAAATTCAGTTATTGATG+CGG | - | chr3.4:69031616-69031635 | MS.gene008169:intron | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | - | chr3.4:69032498-69032517 | MS.gene008169:CDS | 25.0% |
! | TGAATAAATGAAAAGCAAGA+TGG | + | chr3.4:69033566-69033585 | None:intergenic | 25.0% |
! | TGATGCTTTAACTAAAAAAG+CGG | - | chr3.4:69034452-69034471 | MS.gene008169:CDS | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | - | chr3.4:69033601-69033620 | MS.gene008169:intron | 25.0% |
! | TTTCGATGAGTTAACTAATT+TGG | - | chr3.4:69033160-69033179 | MS.gene008169:CDS | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | - | chr3.4:69032600-69032619 | MS.gene008169:CDS | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | - | chr3.4:69032856-69032875 | MS.gene008169:CDS | 25.0% |
!! | TTGGTTTGAATATTATCTTC+TGG | - | chr3.4:69034538-69034557 | MS.gene008169:CDS | 25.0% |
!! | TTTTCAATTACTGAGTTAAG+TGG | - | chr3.4:69034696-69034715 | MS.gene008169:CDS | 25.0% |
!!! | ATGTTGATAATGATAATGAG+AGG | - | chr3.4:69033702-69033721 | MS.gene008169:intron | 25.0% |
!!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr3.4:69031777-69031796 | None:intergenic | 25.0% |
!!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr3.4:69032607-69032626 | MS.gene008169:CDS | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr3.4:69032103-69032122 | MS.gene008169:intron | 25.0% |
!!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr3.4:69033234-69033253 | MS.gene008169:CDS | 25.0% |
!!! | TGTTGATAATGATAATGAGA+GGG | - | chr3.4:69033703-69033722 | MS.gene008169:intron | 25.0% |
AAACACATATGATCTTTCCA+TGG | + | chr3.4:69032671-69032690 | None:intergenic | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | - | chr3.4:69031833-69031852 | MS.gene008169:intron | 30.0% | |
AACAATAAATATCGGCCATT+AGG | - | chr3.4:69032433-69032452 | MS.gene008169:CDS | 30.0% | |
AAGAAAGACCAAATCCAATT+AGG | - | chr3.4:69034281-69034300 | MS.gene008169:CDS | 30.0% | |
AATCAGATTTCGACTACAAT+TGG | - | chr3.4:69033201-69033220 | MS.gene008169:CDS | 30.0% | |
AGAACATCTTATGAAGTGAT+GGG | - | chr3.4:69032136-69032155 | MS.gene008169:intron | 30.0% | |
ATATTAACTTCATCTGAGAG+TGG | - | chr3.4:69031581-69031600 | MS.gene008169:intron | 30.0% | |
ATCAGATTTCGACTACAATT+GGG | - | chr3.4:69033202-69033221 | MS.gene008169:CDS | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | + | chr3.4:69032895-69032914 | None:intergenic | 30.0% | |
ATTATGATCTTCAAACCTTG+GGG | + | chr3.4:69033774-69033793 | None:intergenic | 30.0% | |
CAACAAGATTATGCTCTATT+TGG | - | chr3.4:69032376-69032395 | MS.gene008169:CDS | 30.0% | |
CGTTATGTTTGTAACAAAGA+AGG | - | chr3.4:69031821-69031840 | MS.gene008169:intron | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | + | chr3.4:69033606-69033625 | None:intergenic | 30.0% | |
CTGGTATATGTGTGTTAATT+TGG | - | chr3.4:69032537-69032556 | MS.gene008169:CDS | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | - | chr3.4:69033604-69033623 | MS.gene008169:intron | 30.0% | |
GAGAATGCAAAGAAAAATCT+CGG | - | chr3.4:69033116-69033135 | MS.gene008169:CDS | 30.0% | |
GATTATGATCTTCAAACCTT+GGG | + | chr3.4:69033775-69033794 | None:intergenic | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | + | chr3.4:69032429-69032448 | None:intergenic | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | - | chr3.4:69031922-69031941 | MS.gene008169:intron | 30.0% | |
TAAAGAATCATGGAAGTCTT+TGG | - | chr3.4:69031667-69031686 | MS.gene008169:intron | 30.0% | |
TAAAGAATCGAACAAGTGAA+TGG | + | chr3.4:69033412-69033431 | None:intergenic | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | - | chr3.4:69031832-69031851 | MS.gene008169:intron | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | + | chr3.4:69032304-69032323 | None:intergenic | 30.0% | |
TGGTGTATACTTGTTTACTA+CGG | + | chr3.4:69033546-69033565 | None:intergenic | 30.0% | |
TTCTTTGACCTAATTGGATT+TGG | + | chr3.4:69034292-69034311 | None:intergenic | 30.0% | |
TTTAAGTCCGAAAATCGAAA+AGG | + | chr3.4:69032190-69032209 | None:intergenic | 30.0% | |
TTTCTATTTACACAGCACAA+TGG | - | chr3.4:69032815-69032834 | MS.gene008169:CDS | 30.0% | |
! | AAATGCTCTGGTTTATGTAA+TGG | + | chr3.4:69032034-69032053 | None:intergenic | 30.0% |
! | AGCTGGAATATATTTGAAGT+TGG | - | chr3.4:69031955-69031974 | MS.gene008169:intron | 30.0% |
! | CAAAGTTTTCACAATTGAGA+AGG | - | chr3.4:69033661-69033680 | MS.gene008169:intron | 30.0% |
! | GAATCTTCCTTTTCGATTTT+CGG | - | chr3.4:69032180-69032199 | MS.gene008169:CDS | 30.0% |
! | GCATCTGAAATATTTCTCAA+CGG | - | chr3.4:69034118-69034137 | MS.gene008169:CDS | 30.0% |
! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr3.4:69033009-69033028 | None:intergenic | 30.0% |
! | TCAATTCCGAATGTTTTTCA+AGG | - | chr3.4:69033059-69033078 | MS.gene008169:CDS | 30.0% |
! | TCAGTTTTCAATTCAATGAG+TGG | + | chr3.4:69034840-69034859 | None:intergenic | 30.0% |
! | TGAGGCTTTAACAAATTAAG+CGG | - | chr3.4:69034390-69034409 | MS.gene008169:CDS | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr3.4:69034274-69034293 | None:intergenic | 30.0% |
!! | ACATGTTTTCAAGATTTTGG+AGG | - | chr3.4:69033886-69033905 | MS.gene008169:intron | 30.0% |
!! | ATCATAATCGACTTGATGAA+AGG | - | chr3.4:69033786-69033805 | MS.gene008169:intron | 30.0% |
!! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr3.4:69032512-69032531 | MS.gene008169:CDS | 30.0% |
!! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr3.4:69034166-69034185 | MS.gene008169:CDS | 30.0% |
!! | TCATAATCGACTTGATGAAA+GGG | - | chr3.4:69033787-69033806 | MS.gene008169:intron | 30.0% |
!! | TCGACATGTTTTCAAGATTT+TGG | - | chr3.4:69033883-69033902 | MS.gene008169:intron | 30.0% |
!!! | AAGACATAGCCAGTATTTTT+TGG | - | chr3.4:69032338-69032357 | MS.gene008169:CDS | 30.0% |
!!! | AGACATAGCCAGTATTTTTT+GGG | - | chr3.4:69032339-69032358 | MS.gene008169:CDS | 30.0% |
!!! | CTGCACAATATGTTTTAAAG+CGG | - | chr3.4:69033951-69033970 | MS.gene008169:intron | 30.0% |
!!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr3.4:69033071-69033090 | MS.gene008169:CDS | 30.0% |
ACATTATGGTTCAGAGAATG+AGG | - | chr3.4:69033441-69033460 | MS.gene008169:CDS | 35.0% | |
ATAACACTGGATTCTCTGTT+AGG | - | chr3.4:69031738-69031757 | MS.gene008169:intron | 35.0% | |
CATAAATTCCAAGGCAAGAT+AGG | + | chr3.4:69032638-69032657 | None:intergenic | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | - | chr3.4:69033442-69033461 | MS.gene008169:CDS | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | - | chr3.4:69032073-69032092 | MS.gene008169:intron | 35.0% | |
CGATTATGATCTTCAAACCT+TGG | + | chr3.4:69033776-69033795 | None:intergenic | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | - | chr3.4:69031921-69031940 | MS.gene008169:intron | 35.0% | |
CTCATTCAAATCGTATGCAT+TGG | - | chr3.4:69033288-69033307 | MS.gene008169:CDS | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | - | chr3.4:69031916-69031935 | MS.gene008169:intron | 35.0% | |
GAAGCAAAAGAAAGATGATG+AGG | - | chr3.4:69034372-69034391 | MS.gene008169:CDS | 35.0% | |
GACAGAAATTCCTTATAGCT+CGG | - | chr3.4:69034347-69034366 | MS.gene008169:CDS | 35.0% | |
GAGAACATCTTATGAAGTGA+TGG | - | chr3.4:69032135-69032154 | MS.gene008169:intron | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | - | chr3.4:69031858-69031877 | MS.gene008169:intron | 35.0% | |
TCTAATGACAACTCGTCAAA+AGG | - | chr3.4:69032216-69032235 | MS.gene008169:CDS | 35.0% | |
TGTACAGAGCATAAATTCCA+AGG | + | chr3.4:69032647-69032666 | None:intergenic | 35.0% | |
TTCTCATACTCAACAAGAAC+TGG | + | chr3.4:69031899-69031918 | None:intergenic | 35.0% | |
! | CATCGTAAGAGTGTGTTATT+TGG | - | chr3.4:69032912-69032931 | MS.gene008169:CDS | 35.0% |
! | GAGGCTTTAACAAATTAAGC+GGG | - | chr3.4:69034391-69034410 | MS.gene008169:CDS | 35.0% |
! | GGTTTCGAATGTTGATGTTT+TGG | - | chr3.4:69033724-69033743 | MS.gene008169:intron | 35.0% |
! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr3.4:69033371-69033390 | MS.gene008169:CDS | 35.0% |
! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr3.4:69032518-69032537 | MS.gene008169:CDS | 35.0% |
! | TTTTAATGGAAGGCCTACTT+CGG | - | chr3.4:69033244-69033263 | MS.gene008169:CDS | 35.0% |
! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr3.4:69033084-69033103 | MS.gene008169:CDS | 35.0% |
!! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr3.4:69034220-69034239 | None:intergenic | 35.0% |
!! | CGCTTTAAAACATATTGTGC+AGG | + | chr3.4:69033953-69033972 | None:intergenic | 35.0% |
!! | TATGCATTGGTCTTCAGTTT+GGG | - | chr3.4:69033301-69033320 | MS.gene008169:CDS | 35.0% |
!! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr3.4:69033893-69033912 | MS.gene008169:intron | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | - | chr3.4:69032955-69032974 | MS.gene008169:CDS | 35.0% |
!!! | CACAATATGTTTTAAAGCGG+TGG | - | chr3.4:69033954-69033973 | MS.gene008169:intron | 35.0% |
AATCGAACAAGTGAATGGTC+TGG | + | chr3.4:69033407-69033426 | None:intergenic | 40.0% | |
ACCTATGATCTTTGCATAGC+TGG | + | chr3.4:69032765-69032784 | None:intergenic | 40.0% | |
AGTCGCTTCTTTGACCTAAT+TGG | + | chr3.4:69034298-69034317 | None:intergenic | 40.0% | |
ATCTGAGAGTGGACAATTGA+CGG | - | chr3.4:69031592-69031611 | MS.gene008169:intron | 40.0% | |
ATGAGGAGGACACAACAAAA+GGG | - | chr3.4:69033618-69033637 | MS.gene008169:intron | 40.0% | |
ATGTCGTATGTTTGAGAACC+GGG | - | chr3.4:69033850-69033869 | MS.gene008169:intron | 40.0% | |
ATTTATGCTCTGTACAGCCA+TGG | - | chr3.4:69032651-69032670 | MS.gene008169:CDS | 40.0% | |
ATTTCTCAACGGTGTTCTTG+AGG | - | chr3.4:69034129-69034148 | MS.gene008169:CDS | 40.0% | |
CATGTCGTATGTTTGAGAAC+CGG | - | chr3.4:69033849-69033868 | MS.gene008169:intron | 40.0% | |
CTGAAATCCACCATGAATGT+TGG | - | chr3.4:69034007-69034026 | MS.gene008169:intron | 40.0% | |
GATTTCAGCTTATCGACAGA+CGG | + | chr3.4:69033995-69034014 | None:intergenic | 40.0% | |
GTCAATTCTGATGTAATGCG+CGG | - | chr3.4:69034783-69034802 | MS.gene008169:CDS | 40.0% | |
GTCTTTAGTGCCAACATTCA+TGG | + | chr3.4:69034020-69034039 | None:intergenic | 40.0% | |
TATGAGGAGGACACAACAAA+AGG | - | chr3.4:69033617-69033636 | MS.gene008169:intron | 40.0% | |
TCAAACCATATACACAGACC+AGG | - | chr3.4:69033019-69033038 | MS.gene008169:CDS | 40.0% | |
TCCAGCTATGCAAAGATCAT+AGG | - | chr3.4:69032761-69032780 | MS.gene008169:CDS | 40.0% | |
TCCATCTGCCCAAAAAATAC+TGG | + | chr3.4:69032350-69032369 | None:intergenic | 40.0% | |
TGGTCTGTGTATATGGTTTG+AGG | + | chr3.4:69033020-69033039 | None:intergenic | 40.0% | |
TTCATTTCAGCTGCCTTTCT+TGG | - | chr3.4:69032879-69032898 | MS.gene008169:CDS | 40.0% | |
TTGAAGAAAACCTTTCCCCA+AGG | - | chr3.4:69033756-69033775 | MS.gene008169:intron | 40.0% | |
TTTAGTGCCAACATTCATGG+TGG | + | chr3.4:69034017-69034036 | None:intergenic | 40.0% | |
TTTGCTTCTTCCGAGCTATA+AGG | + | chr3.4:69034360-69034379 | None:intergenic | 40.0% | |
! | TCATGCTGAGTTGGACTTTA+AGG | - | chr3.4:69033469-69033488 | MS.gene008169:CDS | 40.0% |
! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr3.4:69034212-69034231 | None:intergenic | 40.0% |
!! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr3.4:69033896-69033915 | MS.gene008169:intron | 40.0% |
!! | GTATGCATTGGTCTTCAGTT+TGG | - | chr3.4:69033300-69033319 | MS.gene008169:CDS | 40.0% |
!! | TCACATGTTGGCCTGTTTTT+AGG | + | chr3.4:69031872-69031891 | None:intergenic | 40.0% |
!! | TCTTATGAAGTGATGGGTCA+AGG | - | chr3.4:69032142-69032161 | MS.gene008169:intron | 40.0% |
AACTCGTCAAAAGGAGATGG+TGG | - | chr3.4:69032225-69032244 | MS.gene008169:CDS | 45.0% | |
AATGAAGCTCTCTCGAAACC+AGG | - | chr3.4:69032283-69032302 | MS.gene008169:CDS | 45.0% | |
AGAACTGGACTGTCACATGT+TGG | + | chr3.4:69031884-69031903 | None:intergenic | 45.0% | |
AGCCACTTAAAGTCCGAAGT+AGG | + | chr3.4:69033260-69033279 | None:intergenic | 45.0% | |
ATCCCAACAGTCAGCTTATG+CGG | - | chr3.4:69033519-69033538 | MS.gene008169:CDS | 45.0% | |
CATGTCGACATAAGAAACCC+CGG | + | chr3.4:69033871-69033890 | None:intergenic | 45.0% | |
CTCAAGTAGCACAAATGCTC+TGG | + | chr3.4:69032046-69032065 | None:intergenic | 45.0% | |
CTGTCTGTGAACCATCTGTT+GGG | - | chr3.4:69034242-69034261 | MS.gene008169:CDS | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | - | chr3.4:69031926-69031945 | MS.gene008169:intron | 45.0% | |
GACAACTCGTCAAAAGGAGA+TGG | - | chr3.4:69032222-69032241 | MS.gene008169:CDS | 45.0% | |
GAGGGATAATCATGCTGAGT+TGG | - | chr3.4:69033460-69033479 | MS.gene008169:CDS | 45.0% | |
GATCTTCAAACCTTGGGGAA+AGG | + | chr3.4:69033769-69033788 | None:intergenic | 45.0% | |
TGTCGTATGTTTGAGAACCG+GGG | - | chr3.4:69033851-69033870 | MS.gene008169:intron | 45.0% | |
TGTCTTCTGCAGCATCAACT+TGG | + | chr3.4:69032324-69032343 | None:intergenic | 45.0% | |
TGTTCTTGAGGCAGGGAAAA+AGG | - | chr3.4:69034141-69034160 | MS.gene008169:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | + | chr3.4:69031935-69031954 | None:intergenic | 45.0% | |
TTGATATCGTTGCGCTTCAG+TGG | + | chr3.4:69034044-69034063 | None:intergenic | 45.0% | |
! | GTGAGGTCACATTTTACAGC+TGG | - | chr3.4:69033323-69033342 | MS.gene008169:CDS | 45.0% |
!! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr3.4:69033306-69033325 | MS.gene008169:CDS | 45.0% |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr3.4:69031938-69031957 | MS.gene008169:intron | 45.0% |
!!! | GCCAGTATTTTTTGGGCAGA+TGG | - | chr3.4:69032346-69032365 | MS.gene008169:CDS | 45.0% |
ACCAGCCTGGTCTGTGTATA+TGG | + | chr3.4:69033027-69033046 | None:intergenic | 50.0% | |
ACCATATACACAGACCAGGC+TGG | - | chr3.4:69033023-69033042 | MS.gene008169:CDS | 50.0% | |
AGGGTTGTCACAGTCGACAT+TGG | - | chr3.4:69033806-69033825 | MS.gene008169:intron | 50.0% | |
GACCGCATAAGCTGACTGTT+GGG | + | chr3.4:69033524-69033543 | None:intergenic | 50.0% | |
GCTGTCTGTGAACCATCTGT+TGG | - | chr3.4:69034241-69034260 | MS.gene008169:CDS | 50.0% | |
GGCCTACTTCGGACTTTAAG+TGG | - | chr3.4:69033255-69033274 | MS.gene008169:CDS | 50.0% | |
GGGTTGTCACAGTCGACATT+GGG | - | chr3.4:69033807-69033826 | MS.gene008169:intron | 50.0% | |
GGTCTTTGCTCATGGCACAT+GGG | - | chr3.4:69033092-69033111 | MS.gene008169:CDS | 50.0% | |
TACACGTGTTTGCGCAGATG+CGG | - | chr3.4:69034093-69034112 | MS.gene008169:CDS | 50.0% | |
TCAACGGTGTTCTTGAGGCA+GGG | - | chr3.4:69034134-69034153 | MS.gene008169:CDS | 50.0% | |
TGGGTGATCCTATCTTGCCT+TGG | - | chr3.4:69032627-69032646 | MS.gene008169:CDS | 50.0% | |
TGGTCTTTGCTCATGGCACA+TGG | - | chr3.4:69033091-69033110 | MS.gene008169:CDS | 50.0% | |
! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr3.4:69034256-69034275 | None:intergenic | 50.0% |
!! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr3.4:69032148-69032167 | MS.gene008169:intron | 50.0% |
ACTTCAACAACGCACCAGCC+TGG | + | chr3.4:69033040-69033059 | None:intergenic | 55.0% | |
CTCAACGGTGTTCTTGAGGC+AGG | - | chr3.4:69034133-69034152 | MS.gene008169:CDS | 55.0% | |
GGACCGCATAAGCTGACTGT+TGG | + | chr3.4:69033525-69033544 | None:intergenic | 55.0% | |
TGAGGCAGGGAAAAAGGCAG+AGG | - | chr3.4:69034147-69034166 | MS.gene008169:CDS | 55.0% | |
! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr3.4:69032229-69032248 | MS.gene008169:CDS | 55.0% |
!! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr3.4:69032151-69032170 | MS.gene008169:intron | 55.0% |
ACGTGTTTGCGCAGATGCGG+AGG | - | chr3.4:69034096-69034115 | MS.gene008169:CDS | 60.0% | |
GGGTCAAGGAGTTGGAGGCA+CGG | - | chr3.4:69032156-69032175 | MS.gene008169:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 69031572 | 69034926 | 69031572 | ID=MS.gene008169 |
chr3.4 | mRNA | 69031572 | 69034926 | 69031572 | ID=MS.gene008169.t1;Parent=MS.gene008169 |
chr3.4 | exon | 69034044 | 69034926 | 69034044 | ID=MS.gene008169.t1.exon1;Parent=MS.gene008169.t1 |
chr3.4 | CDS | 69034044 | 69034926 | 69034044 | ID=cds.MS.gene008169.t1;Parent=MS.gene008169.t1 |
chr3.4 | exon | 69032176 | 69033609 | 69032176 | ID=MS.gene008169.t1.exon2;Parent=MS.gene008169.t1 |
chr3.4 | CDS | 69032176 | 69033609 | 69032176 | ID=cds.MS.gene008169.t1;Parent=MS.gene008169.t1 |
chr3.4 | exon | 69031572 | 69031591 | 69031572 | ID=MS.gene008169.t1.exon3;Parent=MS.gene008169.t1 |
chr3.4 | CDS | 69031572 | 69031591 | 69031572 | ID=cds.MS.gene008169.t1;Parent=MS.gene008169.t1 |
Gene Sequence |
Protein sequence |