AlfalfaGEDB | MS.gene00817

M. sativa cultivar XinJiangDaYe / MS.gene00817

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00817.t1	XP_013462843.2	91.6	227	18	1	12	238	29	254	1.90E-110	408.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00817.t1	Q700D9	75.4	65	16	0	46	110	15	79	2.2e-22	107.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00817.t1	A0A072V6D0	89.0	237	25	1	2	238	3	238	6.7e-110	406.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene00817.t1	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00817.t1	MTR_2g023580	91.630	227	18	1	12	238	13	238	8.10e-155	429
MS.gene00817.t1	MTR_7g069660	82.609	69	12	0	42	110	59	127	7.48e-35	127
MS.gene00817.t1	MTR_1g112370	79.412	68	14	0	45	112	13	80	4.92e-34	125
MS.gene00817.t1	MTR_2g084230	66.265	83	28	0	42	124	85	167	3.36e-33	122
MS.gene00817.t1	MTR_0223s0040	78.788	66	14	0	45	110	9	74	3.77e-33	121
MS.gene00817.t1	MTR_2g084230	66.265	83	28	0	42	124	85	167	6.12e-33	123
MS.gene00817.t1	MTR_8g086410	80.000	65	13	0	46	110	101	165	5.48e-32	121
MS.gene00817.t1	MTR_8g086410	80.000	65	13	0	46	110	103	167	5.74e-32	121
MS.gene00817.t1	MTR_8g086410	72.222	72	13	1	46	110	103	174	2.06e-29	114
MS.gene00817.t1	MTR_2g016220	72.464	69	19	0	46	114	81	149	2.85e-29	113

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00817.t1	AT2G38300	56.667	120	48	2	30	145	30	149	1.02e-34	127
MS.gene00817.t1	AT4G04605	53.636	110	46	2	41	149	1	106	6.20e-34	122
MS.gene00817.t1	AT2G02060	83.871	62	10	0	46	107	21	82	9.28e-33	119
MS.gene00817.t1	AT2G02060	83.871	62	10	0	46	107	21	82	9.28e-33	119
MS.gene00817.t1	AT2G42660	46.809	141	70	2	46	185	42	178	2.79e-31	115
MS.gene00817.t1	AT2G40260	63.529	85	31	0	33	117	61	145	4.35e-31	118
MS.gene00817.t1	AT1G14600	79.032	62	13	0	46	107	15	76	1.86e-29	111
MS.gene00817.t1	AT4G04555	57.534	73	31	0	41	113	1	73	3.41e-25	95.9
MS.gene00817.t1	AT4G04580	48.864	88	42	1	41	128	1	85	4.67e-24	94.7
MS.gene00817.t1	AT4G17695	50.526	95	40	1	16	110	133	220	6.55e-23	95.1

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Find 0 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATGTAAATAGGCTTTC+AGG	+	14702:14108-14127	MS.gene00817:intergenic	30.0%
AAAGATTCGAAGATATAACC+AGG	-	14702:14947-14966	MS.gene00817:CDS	30.0%
AAATGCATGTTATCATGTCA+CGG	-	14702:12243-12262	MS.gene00817:intron	30.0%
AATCCCATCAAATGAATGTA+AGG	+	14702:14844-14863	MS.gene00817:intergenic	30.0%
ATAACAGATAGATAGGGAAT+AGG	+	14702:13061-13080	MS.gene00817:intergenic	30.0%
CAATCAATTGTGATCTGTAA+TGG	-	14702:13722-13741	MS.gene00817:intron	30.0%
CATATTGTTTGGTACAATAG+AGG	-	14702:12324-12343	MS.gene00817:intron	30.0%
CATGTATGCATCTTTGTAAA+TGG	-	14702:12271-12290	MS.gene00817:intron	30.0%
CCTTAAAGTGAAATAGACTA+AGG	+	14702:14232-14251	MS.gene00817:intergenic	30.0%
CCTTAGTCTATTTCACTTTA+AGG	-	14702:14229-14248	MS.gene00817:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
14702	gene	11445	15068	11445	ID=MS.gene00817
14702	mRNA	11445	15068	11445	ID=MS.gene00817.t1;Parent=MS.gene00817
14702	exon	14834	15068	14834	ID=MS.gene00817.t1.exon1;Parent=MS.gene00817.t1
14702	CDS	14834	15068	14834	ID=cds.MS.gene00817.t1;Parent=MS.gene00817.t1
14702	exon	14533	14609	14533	ID=MS.gene00817.t1.exon2;Parent=MS.gene00817.t1
14702	CDS	14533	14609	14533	ID=cds.MS.gene00817.t1;Parent=MS.gene00817.t1
14702	exon	14310	14346	14310	ID=MS.gene00817.t1.exon3;Parent=MS.gene00817.t1
14702	CDS	14310	14346	14310	ID=cds.MS.gene00817.t1;Parent=MS.gene00817.t1
14702	exon	12991	13087	12991	ID=MS.gene00817.t1.exon4;Parent=MS.gene00817.t1
14702	CDS	12991	13087	12991	ID=cds.MS.gene00817.t1;Parent=MS.gene00817.t1
14702	exon	12705	12834	12705	ID=MS.gene00817.t1.exon5;Parent=MS.gene00817.t1
14702	CDS	12705	12834	12705	ID=cds.MS.gene00817.t1;Parent=MS.gene00817.t1
14702	exon	11445	11585	11445	ID=MS.gene00817.t1.exon6;Parent=MS.gene00817.t1
14702	CDS	11445	11585	11445	ID=cds.MS.gene00817.t1;Parent=MS.gene00817.t1

Gene Sequence

>MS.gene00817

ATGTCTTCATCTTCTTCTTCTTCTCCTACTAGCGGAGTTGTGGACACTAACCCTTCACAACCTTCTGATGTGCGAACTTTTCACCGTCGTTTAGATTCTCATCAGACTCCAGAGATGAGTCTAAAAGCACCTGTGGTGAGACCTTATGTTCGATCAAAGTTGCCTCGGCTTCGTTGGACACCAGATCTTCACCGTTGCTTTGTGCATGCAGTTCAAAGGCTTGGAGGAGAAGAGAGTAAGCTACCCTAGTTCTTTTATTCAATATTATATACTTAGATCCTATTTTTTAATTTAAATTTCTCTCTCTATATATAATAATCACAAGTGATTGATCATGTCTTAAAAAAATCTTGACTTTCAATTGCCATCTACTATTAAAAAAATCATTCCTTTGTTGTTAATTTGACTTGAAAACATTATTTTTGGTTTTAATAATTTATATGTATGCTTGTATTACAGGGGCTACACCAAAGTTAGTTTTACAATTCATGAATATCAAGGGGCTTACCATATCTCATGTCAAAAGCCACCTTCAGGTACTCTTTCTCTTCATCTAAATAATTAACCACTAAAAATGTTTGATTAATAAAAAAAAAACCATTCTTTCCACCTCTTGCAAGCTAATTACCTTATTTATGTTCGTTTTTTTAAATAAATAAAAATAATAATTTTGTACCAAATTTTTTTTTCCCTAAAATTTTGAAATTTCAATGTTATTGCAGATGTACAGGAGCATGAAACAAGAGCAGATGATTGAAGGTATTACTAATATTAATTGTGGTGTAGTACTGTTTAATTAAATGCATGTTATCATGTCACGGAAACACATGTATGCATCTTTGTAAATGGAAGAAATAGGTTGATGAAGAATACATTAGACATATTGTTTGGTACAATAGAGGAAATTTTAGATCTGTGAATACATCTATATTTAGTGACACATTATGCGAAGAAAATAATAGAACAAAACAAGAAATAGGTGTACGTAAGCATAACTGGTTGATTCTTTATTCCGTGACCAAGATAGAGAAAAGTAACGTCAAATATTCTTCCAGATTTTGTTCCTAGAAAAATACATCATTTTGTGTTGGACTGCTACTCTACTTTCGTCATATCAGAGTTGTCTCACGCTGAAATTTTTTCCCAAAGAAATTATAGACCTCAATAAAAATAAACGTGGTAGAAGTAGAATTTTTTATTACAGGAAAAAGTTAACGAGTGTCCTCAGAACACTTTTTTAAAACTTTAGATGATATGTTTCAAAAAAAAAAAAATTTAGACTGTAAGTTTTTATAAAAGTTTGTGTATTTGGTGTATCGGGAATTGAAATATTTGACTTTATTACAGAATAATTAATTAAAATACTTTGTGTATTTTAACTTTGATGAATATGTTATTTTTATGTAGATATTCAGTTTCATACTTTAGATAAGTCAAGATATTATTTTCTAAAATGTTTACAAAATATCTAAATAGTGAAATTTGATTGGATGTTTGTATAAAATTATTTTACACTATTAGTGTTTACAAATTAAAATTTACATATATAAATTATGATAGTTCCTGAAACAGTTTTTTGAATATGTTCCTCAAACAATTTTTGGCGACTTAATCCTATTCCCTATCTATCTGTTATCATCTAGATTGTTTCTCTTTTTGCTATGTGACTGATGGTTATAATTATACTTTATCAAGTCTTTTTGTGGTTACATATACTTTATCAAGTCTTATCCGGTACACCTTGTGCTGATAGGATTTGCTTCAGTTGTTTAACATATTTCTCTTTTTGCCTGTTAAAAAAATATACATTTAGTGCTTGAAACATCTTTACAAATATCCACATTATGATATGTGATTCAATGGATGTAAAATAATTACAATGACAGTCTAACACTGCATGCATACAAATTAAATTCATAATTTATCTTATAACATCAGAATTGTAATAGAGTAATTTGATATAAATTTATATATTTACCAGCTGCAAAGAGAAAGGACATGGCAGCTGATTTATCAGTTTCAGCAATCTCCTCCTCAGCCCTTGTTCCAAGCTACTATCTGAATCATGGCCAAAGAATGTAATTCTCCAAACTTTCTTTTTTTTATCGTTCCTCTCTTCTTTTATTTACGGTGGCTATAATTCTTTGAACTTTATATTTTGCATTATAATTTCAGAATTTTATCTCTTCTTTACAATGCATATAATTTTGGAATTTCTCTCTTAATTATTCCAGGGATGCTTATTGGCTAGAGTCTTTCAATGGAACTCAAGGTAATCAATCAATTGTGATCTGTAATGGAGATGAGCAGAAGATGCACACTTACATCCTCTTTGATGGTATTCTCGGAGGCCAGACTGTTCAAGTACGTAAATCATTCCTCTCAATTAGTCTCCTTTCTACATACTAATACTATGTTGAGATAAAATATTTATATAAACTACTTTGAGGATCCCAATTCCACTTCTTCTATCACCAACACACAAACACATTTTTTTTTTTAAAATCGTTGTATCCTACAATTTTGTTGACCAACAATAGGTCAGATCCGACTTTGATAGGTCTGAGCCTGACCTACAAAAAATTTGTAAGTCTTAGTATGACTTATGACCTTTTGTAAGTTTTTTTTTTTGGTCCAGTCTATTTAAAAGTTTGATTAAACCTGAAAGCCTATTTACATGTTTATTTCATATTAAAGTCGTTAAATAATCTAATTTATCAACTTCTAAATAGACTCAACAAGCCTTAAAGTCTATTTCACGAAGGCTTACCTATCACTGTAAGACCTTAGTCTATTTCACTTTAAGGCCTTAAAGCCTATTTAAATAGTCCTTTATTTGAGTTGTTACTTGATTTTTATGTTAAATATAAATTCTATTTTGATAAAAGTAAAAATAAGTTTTAATAAAATGCATAAGCATGTCACCATATCAAGCTTCGTATGCTTTTTTGATAGTCTAAGCCCGAGCTATTTACTTAAATAAGTTTTTTTTTTTAAAGTCTAAACCTTGCCTTATTAATAAACAGGCAAGCCGTAGACCCTTATAGGCCCGTATGACCTATTCCCGCCCTTAACCAACATTCAATCATTTAATAACATGTTTTGTATTTATTTATTATGAAGATAATTTTTAAATTTTGAATTGATTTTGTCTTCGGAGGACAATTTTTTTTCTTTCTTTCTTTCTATTTTTGAACCACACATATTAATTATCACTAGTGTGTTATTTATTTATTTATTTATAATGTGTGTTGTGTTAGTGTGGTGTTGAATGTGTGACATCAAATATTACTATAATATTCCGTTTAACATATTTGCTCTTATTTGGTCCAATAAAATATATTTTCCCTTATTGATTAAAATTTATTTCAAATTGATTGCACTAAATTATATTGACCTTACATTCATTTGATGGGATTGAGTGAAAGTGTGTGTGCAAGAAATGCTACAAAACAATAATATTCATTCCGTTTTGCTCCTCAGGGGACCAAAAGCGACCAACAAAGATTCGAAGATATAACCAGGAGAGGAGAGAGAGTGAATGAAGACACAGTTCTGTCCCCATCAACAAGCTCAGGAGGTCCAGACACAAATGATGTCTCTCTTGAGCTCAAACTCAACTGA

Protein sequence

>MS.gene00817.t1

MSSSSSSSPTSGVVDTNPSQPSDVRTFHRRLDSHQTPEMSLKAPVVRPYVRSKLPRLRWTPDLHRCFVHAVQRLGGEERATPKLVLQFMNIKGLTISHVKSHLQMYRSMKQEQMIEAAKRKDMAADLSVSAISSSALVPSYYLNHGQRMDAYWLESFNGTQGNQSIVICNGDEQKMHTYILFDGILGGQTVQGTKSDQQRFEDITRRGERVNEDTVLSPSTSSGGPDTNDVSLELKLN