AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00817


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00817.t1 MTR_2g023580 91.630 227 18 1 12 238 13 238 8.10e-155 429
MS.gene00817.t1 MTR_7g069660 82.609 69 12 0 42 110 59 127 7.48e-35 127
MS.gene00817.t1 MTR_1g112370 79.412 68 14 0 45 112 13 80 4.92e-34 125
MS.gene00817.t1 MTR_2g084230 66.265 83 28 0 42 124 85 167 3.36e-33 122
MS.gene00817.t1 MTR_0223s0040 78.788 66 14 0 45 110 9 74 3.77e-33 121
MS.gene00817.t1 MTR_2g084230 66.265 83 28 0 42 124 85 167 6.12e-33 123
MS.gene00817.t1 MTR_8g086410 80.000 65 13 0 46 110 101 165 5.48e-32 121
MS.gene00817.t1 MTR_8g086410 80.000 65 13 0 46 110 103 167 5.74e-32 121
MS.gene00817.t1 MTR_8g086410 72.222 72 13 1 46 110 103 174 2.06e-29 114
MS.gene00817.t1 MTR_2g016220 72.464 69 19 0 46 114 81 149 2.85e-29 113
MS.gene00817.t1 MTR_2g016220 72.464 69 19 0 46 114 81 149 3.34e-29 113
MS.gene00817.t1 MTR_2g016220 68.493 73 19 1 46 114 81 153 3.98e-27 107
MS.gene00817.t1 MTR_3g450310 55.714 70 31 0 46 115 11 80 4.49e-23 93.2
MS.gene00817.t1 MTR_1g021520 65.672 67 22 1 45 110 116 182 1.15e-21 91.3
MS.gene00817.t1 MTR_7g098250 43.243 111 57 2 28 132 231 341 3.99e-21 91.7
MS.gene00817.t1 MTR_6g071625 57.143 70 30 0 53 122 201 270 7.86e-21 90.1
MS.gene00817.t1 MTR_8g066310 67.241 58 19 0 53 110 172 229 1.40e-20 89.4
MS.gene00817.t1 MTR_7g115530 57.971 69 27 1 55 121 219 287 2.18e-20 87.8
MS.gene00817.t1 MTR_5g029470 58.333 72 29 1 48 118 212 283 3.04e-20 89.0
MS.gene00817.t1 MTR_7g115530 57.971 69 27 1 55 121 219 287 5.64e-20 87.4
MS.gene00817.t1 MTR_1g080330 64.286 56 20 0 55 110 176 231 5.89e-20 86.7
MS.gene00817.t1 MTR_1g080330 64.286 56 20 0 55 110 176 231 6.99e-20 87.8
MS.gene00817.t1 MTR_7g115530 57.971 69 27 1 55 121 219 287 8.20e-20 87.8
MS.gene00817.t1 MTR_3g064840 64.062 64 22 1 48 110 267 330 8.80e-20 87.8
MS.gene00817.t1 MTR_7g115530 64.286 56 20 0 55 110 219 274 2.03e-19 85.9
MS.gene00817.t1 MTR_7g115530 65.385 52 18 0 55 106 219 270 2.96e-18 82.0
MS.gene00817.t1 MTR_7g115530 68.000 50 16 0 55 104 219 268 4.26e-18 81.3
MS.gene00817.t1 MTR_7g088070 46.154 104 53 2 46 149 42 142 4.69e-18 81.3
MS.gene00817.t1 MTR_6g032990 64.151 53 19 0 55 107 43 95 5.50e-18 82.4
MS.gene00817.t1 MTR_7g093030 56.944 72 29 1 50 121 208 277 6.11e-18 81.3
MS.gene00817.t1 MTR_7g093030 60.656 61 24 0 50 110 208 268 1.08e-17 81.3
MS.gene00817.t1 MTR_5g027440 62.069 58 22 0 50 107 21 78 1.19e-17 80.1
MS.gene00817.t1 MTR_1g090670 63.158 57 21 0 55 111 45 101 1.50e-17 80.1
MS.gene00817.t1 MTR_2g027800 63.158 57 21 0 55 111 40 96 1.95e-17 80.1
MS.gene00817.t1 MTR_7g088070 45.283 106 55 2 46 149 42 146 2.10e-17 79.3
MS.gene00817.t1 MTR_2g086450 62.264 53 20 0 55 107 46 98 3.73e-17 80.1
MS.gene00817.t1 MTR_5g041350 53.333 60 28 0 55 114 16 75 5.94e-17 79.0
MS.gene00817.t1 MTR_2g027800 64.151 53 19 0 55 107 40 92 7.75e-17 78.2
MS.gene00817.t1 MTR_1g053830 50.746 67 33 0 44 110 8 74 9.29e-17 73.6
MS.gene00817.t1 MTR_1g053835 59.091 66 25 1 56 121 260 323 1.13e-16 78.6
MS.gene00817.t1 MTR_2g027860 65.455 55 19 0 56 110 51 105 2.60e-16 77.0
MS.gene00817.t1 MTR_6g444980 45.556 90 42 2 55 138 36 124 3.17e-16 77.0
MS.gene00817.t1 MTR_6g444980 45.556 90 42 2 55 138 36 124 3.31e-16 77.0
MS.gene00817.t1 MTR_4g081710 50.000 64 31 1 55 118 18 80 2.62e-15 74.3
MS.gene00817.t1 MTR_4g086835 50.000 68 34 0 40 107 260 327 1.65e-14 72.4
MS.gene00817.t1 MTR_1g053800 58.491 53 22 0 56 108 179 231 7.67e-14 70.1
MS.gene00817.t1 MTR_7g068600 61.818 55 18 1 56 107 15 69 2.56e-13 67.4
MS.gene00817.t1 MTR_4g086835 50.000 68 33 1 40 107 260 326 4.02e-13 68.6
MS.gene00817.t1 MTR_4g113140 57.692 52 22 0 56 107 237 288 1.01e-12 67.4
MS.gene00817.t1 MTR_2g450070 54.545 55 24 1 53 107 212 265 1.90e-12 66.6
MS.gene00817.t1 MTR_2g450070 54.545 55 24 1 53 107 212 265 2.01e-12 66.6
MS.gene00817.t1 MTR_7g093010 35.556 135 64 4 14 132 171 298 3.17e-12 65.5
MS.gene00817.t1 MTR_4g064730 47.126 87 42 4 22 107 100 183 1.10e-11 63.5
MS.gene00817.t1 MTR_1g093080 51.923 52 25 0 56 107 213 264 6.36e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00817.t1 AT2G38300 56.667 120 48 2 30 145 30 149 1.02e-34 127
MS.gene00817.t1 AT4G04605 53.636 110 46 2 41 149 1 106 6.20e-34 122
MS.gene00817.t1 AT2G02060 83.871 62 10 0 46 107 21 82 9.28e-33 119
MS.gene00817.t1 AT2G02060 83.871 62 10 0 46 107 21 82 9.28e-33 119
MS.gene00817.t1 AT2G42660 46.809 141 70 2 46 185 42 178 2.79e-31 115
MS.gene00817.t1 AT2G40260 63.529 85 31 0 33 117 61 145 4.35e-31 118
MS.gene00817.t1 AT1G14600 79.032 62 13 0 46 107 15 76 1.86e-29 111
MS.gene00817.t1 AT4G04555 57.534 73 31 0 41 113 1 73 3.41e-25 95.9
MS.gene00817.t1 AT4G04580 48.864 88 42 1 41 128 1 85 4.67e-24 94.7
MS.gene00817.t1 AT4G17695 50.526 95 40 1 16 110 133 220 6.55e-23 95.1
MS.gene00817.t1 AT5G42630 68.966 58 18 0 53 110 104 161 5.52e-22 90.9
MS.gene00817.t1 AT5G42630 68.966 58 18 0 53 110 104 161 6.47e-22 91.7
MS.gene00817.t1 AT1G32240 58.333 72 29 1 48 118 206 277 4.13e-20 88.2
MS.gene00817.t1 AT1G32240 64.062 64 22 1 48 110 206 269 4.53e-20 88.2
MS.gene00817.t1 AT5G16560 64.062 64 22 1 48 110 212 275 5.46e-20 88.2
MS.gene00817.t1 AT4G28610 65.455 55 19 0 56 110 227 281 1.02e-18 84.7
MS.gene00817.t1 AT5G29000 65.455 55 19 0 56 110 190 244 1.10e-18 84.3
MS.gene00817.t1 AT5G29000 65.455 55 19 0 56 110 190 244 1.10e-18 84.3
MS.gene00817.t1 AT5G29000 65.455 55 19 0 56 110 233 287 1.16e-18 83.6
MS.gene00817.t1 AT5G29000 65.455 55 19 0 56 110 233 287 1.34e-18 84.3
MS.gene00817.t1 AT3G04450 61.818 55 21 0 56 110 240 294 2.05e-18 82.8
MS.gene00817.t1 AT3G04450 61.818 55 21 0 56 110 200 254 2.19e-18 83.6
MS.gene00817.t1 AT3G04450 61.818 55 21 0 56 110 200 254 2.19e-18 83.6
MS.gene00817.t1 AT3G04450 61.818 55 21 0 56 110 240 294 2.68e-18 83.6
MS.gene00817.t1 AT5G45580 58.730 63 26 0 50 112 3 65 3.46e-18 81.3
MS.gene00817.t1 AT5G45580 58.730 63 26 0 50 112 19 81 3.69e-18 81.6
MS.gene00817.t1 AT3G13040 49.383 81 41 0 56 136 243 323 1.21e-17 81.6
MS.gene00817.t1 AT3G13040 49.383 81 41 0 56 136 243 323 1.21e-17 81.6
MS.gene00817.t1 AT3G13040 49.383 81 41 0 56 136 243 323 1.21e-17 81.6
MS.gene00817.t1 AT2G20400 63.636 55 20 0 56 110 233 287 2.93e-17 80.5
MS.gene00817.t1 AT2G20400 63.636 55 20 0 56 110 233 287 2.95e-17 80.5
MS.gene00817.t1 AT3G04030 60.377 53 21 0 55 107 46 98 3.42e-17 80.1
MS.gene00817.t1 AT5G18240 62.264 53 20 0 55 107 46 98 4.04e-17 80.1
MS.gene00817.t1 AT5G18240 62.264 53 20 0 55 107 46 98 4.04e-17 80.1
MS.gene00817.t1 AT3G04030 60.377 53 21 0 55 107 46 98 4.24e-17 79.7
MS.gene00817.t1 AT5G18240 62.264 53 20 0 55 107 46 98 4.71e-17 79.7
MS.gene00817.t1 AT5G18240 62.264 53 20 0 55 107 46 98 4.71e-17 79.7
MS.gene00817.t1 AT5G18240 62.264 53 20 0 55 107 46 98 4.90e-17 79.7
MS.gene00817.t1 AT3G12730 59.649 57 23 0 55 111 24 80 7.91e-17 77.0
MS.gene00817.t1 AT2G01060 65.455 55 19 0 56 110 17 71 1.17e-16 77.4
MS.gene00817.t1 AT2G06020 52.542 59 28 0 49 107 81 139 1.80e-16 77.4
MS.gene00817.t1 AT5G06800 42.727 110 55 3 28 132 169 275 3.03e-16 77.4
MS.gene00817.t1 AT5G06800 49.398 83 39 2 28 110 169 248 3.09e-16 76.3
MS.gene00817.t1 AT4G13640 56.140 57 25 0 55 111 38 94 4.23e-16 76.3
MS.gene00817.t1 AT4G13640 56.140 57 25 0 55 111 38 94 4.23e-16 76.3
MS.gene00817.t1 AT3G24120 56.140 57 25 0 55 111 42 98 4.45e-16 76.3
MS.gene00817.t1 AT3G24120 56.140 57 25 0 55 111 42 98 4.68e-16 75.9
MS.gene00817.t1 AT1G79430 57.895 57 24 0 55 111 35 91 6.26e-16 76.3
MS.gene00817.t1 AT5G06800 49.398 83 39 2 28 110 169 248 1.47e-15 75.5
MS.gene00817.t1 AT1G69580 58.491 53 22 0 55 107 35 87 5.46e-15 73.6
MS.gene00817.t1 AT1G69580 58.491 53 22 0 55 107 35 87 5.48e-15 73.6
MS.gene00817.t1 AT3G04030 58.491 53 21 1 55 107 46 97 1.40e-14 72.8
MS.gene00817.t1 AT3G62670 35.849 106 56 3 52 145 209 314 9.74e-14 70.1
MS.gene00817.t1 AT2G03500 57.692 52 22 0 56 107 235 286 1.09e-12 67.0
MS.gene00817.t1 AT5G59570 55.357 56 24 1 52 107 139 193 1.80e-12 65.9
MS.gene00817.t1 AT5G59570 55.357 56 24 1 52 107 139 193 1.80e-12 65.9
MS.gene00817.t1 AT5G44190 46.269 67 35 1 53 119 146 211 2.02e-12 66.2
MS.gene00817.t1 AT1G25550 55.769 52 23 0 56 107 211 262 2.34e-12 65.9
MS.gene00817.t1 AT5G44190 46.269 67 35 1 53 119 146 211 2.73e-12 65.9
MS.gene00817.t1 AT4G37180 50.847 59 29 0 49 107 205 263 3.20e-12 65.5
MS.gene00817.t1 AT4G37180 50.847 59 29 0 49 107 212 270 4.07e-12 65.5
MS.gene00817.t1 AT3G46640 54.545 55 24 1 53 107 143 196 8.99e-12 63.9
MS.gene00817.t1 AT3G46640 54.545 55 24 1 53 107 143 196 8.99e-12 63.9
MS.gene00817.t1 AT2G40970 37.500 96 55 2 53 144 104 198 9.04e-12 63.5
MS.gene00817.t1 AT3G46640 54.545 55 24 1 53 107 143 196 1.34e-11 63.5
MS.gene00817.t1 AT1G25550 51.923 52 25 0 56 107 211 262 5.86e-11 61.2
MS.gene00817.t1 AT1G68670 53.846 52 24 0 56 107 217 268 6.32e-11 61.6
MS.gene00817.t1 AT4G37180 49.123 57 29 0 49 105 205 261 9.55e-11 60.8

Find 0 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGAAATTTCAAAATTTTA+GGG + 14702:12137-12156 MS.gene00817:intergenic 10.0%
!!! GAAATAAATTTTAATCAATA+AGG + 14702:14795-14814 MS.gene00817:intergenic 10.0%
!!! TAAATGTATATTTTTTTAAC+AGG + 14702:13237-13256 MS.gene00817:intergenic 10.0%
!! AAATAAAGGACTATTTAAAT+AGG + 14702:14263-14282 MS.gene00817:intergenic 15.0%
!! AATATTGAATAAAAGAACTA+GGG + 14702:11691-11710 MS.gene00817:intergenic 15.0%
!! CAAAAAAAAAAACTTACAAA+AGG + 14702:14057-14076 MS.gene00817:intergenic 15.0%
!! TAAAAAAACGAACATAAATA+AGG + 14702:12075-12094 MS.gene00817:intergenic 15.0%
!! TAATATTGAATAAAAGAACT+AGG + 14702:11692-11711 MS.gene00817:intergenic 15.0%
!! TATGAAATAAACATGTAAAT+AGG + 14702:14116-14135 MS.gene00817:intergenic 15.0%
!! TATTTATATAAACTACTTTG+AGG - 14702:13872-13891 MS.gene00817:intron 15.0%
!! TTTATAAAAGTTTGTGTATT+TGG - 14702:12734-12753 MS.gene00817:CDS 15.0%
!!! ATGATTTTTTTAATAGTAGA+TGG + 14702:11812-11831 MS.gene00817:intergenic 15.0%
!!! ATTTTAGGGAAAAAAAAATT+TGG + 14702:12123-12142 MS.gene00817:intergenic 15.0%
!!! CATTGAAATTTCAAAATTTT+AGG + 14702:12138-12157 MS.gene00817:intergenic 15.0%
!!! CTTTTGTAAGTTTTTTTTTT+TGG - 14702:14055-14074 MS.gene00817:intron 15.0%
!!! TAAGGGAAAATATATTTTAT+TGG + 14702:14777-14796 MS.gene00817:intergenic 15.0%
!!! TATTAATCAAACATTTTTAG+TGG + 14702:12013-12032 MS.gene00817:intergenic 15.0%
!! AATACATTAGACATATTGTT+TGG - 14702:12313-12332 MS.gene00817:intron 20.0%
!! AATAGAACAAAACAAGAAAT+AGG - 14702:12402-12421 MS.gene00817:intron 20.0%
!! ACGATAAAAAAAAGAAAGTT+TGG + 14702:13534-13553 MS.gene00817:intergenic 20.0%
!! ACTTATTTAAGTAAATAGCT+CGG + 14702:14410-14429 MS.gene00817:intergenic 20.0%
!! ATAAGAGCAAATATGTTAAA+CGG + 14702:14749-14768 MS.gene00817:intergenic 20.0%
!! ATGAATTGTAAAACTAACTT+TGG + 14702:11915-11934 MS.gene00817:intergenic 20.0%
!! GGTATTACTAATATTAATTG+TGG - 14702:12203-12222 MS.gene00817:intron 20.0%
!! GTTATTAAATGATTGAATGT+TGG + 14702:14522-14541 MS.gene00817:intergenic 20.0%
!! TCTAAATAGTGAAATTTGAT+TGG - 14702:12912-12931 MS.gene00817:intron 20.0%
!! TTAACATATTTGCTCTTATT+TGG - 14702:14750-14769 MS.gene00817:intron 20.0%
!! TTACAATTCATGAATATCAA+GGG - 14702:11924-11943 MS.gene00817:intron 20.0%
!! TTTACAATTCATGAATATCA+AGG - 14702:11923-11942 MS.gene00817:intron 20.0%
!!! AAAAATACATCATTTTGTGT+TGG - 14702:12513-12532 MS.gene00817:intron 20.0%
!!! AAGACTTACAAATTTTTTGT+AGG + 14702:14020-14039 MS.gene00817:intergenic 20.0%
!!! AATCAAACTTTTAAATAGAC+TGG + 14702:14082-14101 MS.gene00817:intergenic 20.0%
!!! ACAAAATGATGTATTTTTCT+AGG + 14702:12511-12530 MS.gene00817:intergenic 20.0%
!!! CTTTACAATGCATATAATTT+TGG - 14702:13633-13652 MS.gene00817:intron 20.0%
!!! GAAGTAGAATTTTTTATTAC+AGG - 14702:12627-12646 MS.gene00817:intron 20.0%
!!! TGACTTGAAAACATTATTTT+TGG - 14702:11848-11867 MS.gene00817:intron 20.0%
!!! TTTTGAATTGATTTTGTCTT+CGG - 14702:14580-14599 MS.gene00817:CDS 20.0%
! AAAAAAATGTGTTTGTGTGT+TGG + 14702:13922-13941 MS.gene00817:intergenic 25.0%
! ATATGTATGCTTGTATTACA+GGG - 14702:11883-11902 MS.gene00817:intron 25.0%
! ATTGAGGTCTATAATTTCTT+TGG + 14702:12591-12610 MS.gene00817:intergenic 25.0%
! ATTTCTCTCTTAATTATTCC+AGG - 14702:13657-13676 MS.gene00817:intron 25.0%
! CATAGTATTAGTATGTAGAA+AGG + 14702:13841-13860 MS.gene00817:intergenic 25.0%
! CATATTCAAAAAACTGTTTC+AGG + 14702:13010-13029 MS.gene00817:intergenic 25.0%
! CATTATGATATGTGATTCAA+TGG - 14702:13285-13304 MS.gene00817:intron 25.0%
! CTAGTGATAATTAATATGTG+TGG + 14702:14644-14663 MS.gene00817:intergenic 25.0%
! CTTATTTAAGTAAATAGCTC+GGG + 14702:14409-14428 MS.gene00817:intergenic 25.0%
! GACTATTTAAATAGGCTTTA+AGG + 14702:14255-14274 MS.gene00817:intergenic 25.0%
! TACAATTCATGAATATCAAG+GGG - 14702:11925-11944 MS.gene00817:intron 25.0%
! TAGATGATAACAGATAGATA+GGG + 14702:13067-13086 MS.gene00817:intergenic 25.0%
! TATATGTATGCTTGTATTAC+AGG - 14702:11882-11901 MS.gene00817:intron 25.0%
! TCAAGTAACAACTCAAATAA+AGG + 14702:14277-14296 MS.gene00817:intergenic 25.0%
! TCAAGTCAAATTAACAACAA+AGG + 14702:11836-11855 MS.gene00817:intergenic 25.0%
! TCTTTGTAAATGGAAGAAAT+AGG - 14702:12281-12300 MS.gene00817:intron 25.0%
! TTATATCTTCGAATCTTTGT+TGG + 14702:14945-14964 MS.gene00817:intergenic 25.0%
! TTGAATCACATATCATAATG+TGG + 14702:13285-13304 MS.gene00817:intergenic 25.0%
! TTGAGGTCTATAATTTCTTT+GGG + 14702:12590-12609 MS.gene00817:intergenic 25.0%
! TTTCTCTCTTAATTATTCCA+GGG - 14702:13658-13677 MS.gene00817:intron 25.0%
!! AAATGATTGAATGTTGGTTA+AGG + 14702:14516-14535 MS.gene00817:intergenic 25.0%
!! AATGATTGAATGTTGGTTAA+GGG + 14702:14515-14534 MS.gene00817:intergenic 25.0%
!! ATACTTTATCAAGTCTTATC+CGG - 14702:13157-13176 MS.gene00817:intron 25.0%
!! TACTTTATCAAGTCTTTTTG+TGG - 14702:13128-13147 MS.gene00817:intron 25.0%
!! TATGTTCCTCAAACAATTTT+TGG - 14702:13026-13045 MS.gene00817:CDS 25.0%
!!! AGTTTTAAAAAAGTGTTCTG+AGG + 14702:12670-12689 MS.gene00817:intergenic 25.0%
!!! ATTTTTCTAGGAACAAAATC+TGG + 14702:12499-12518 MS.gene00817:intergenic 25.0%
!!! TACCACGTTTATTTTTATTG+AGG + 14702:12607-12626 MS.gene00817:intergenic 25.0%
!!! TTACAAATTTTTTGTAGGTC+AGG + 14702:14015-14034 MS.gene00817:intergenic 25.0%
!!! TTCCTCTCTTCTTTTATTTA+CGG - 14702:13553-13572 MS.gene00817:intron 25.0%
AAACATGTAAATAGGCTTTC+AGG + 14702:14108-14127 MS.gene00817:intergenic 30.0%
AAAGATTCGAAGATATAACC+AGG - 14702:14947-14966 MS.gene00817:CDS 30.0%
AAATGCATGTTATCATGTCA+CGG - 14702:12243-12262 MS.gene00817:intron 30.0%
AATCCCATCAAATGAATGTA+AGG + 14702:14844-14863 MS.gene00817:intergenic 30.0%
ATAACAGATAGATAGGGAAT+AGG + 14702:13061-13080 MS.gene00817:intergenic 30.0%
CAATCAATTGTGATCTGTAA+TGG - 14702:13722-13741 MS.gene00817:intron 30.0%
CATATTGTTTGGTACAATAG+AGG - 14702:12324-12343 MS.gene00817:intron 30.0%
CATGTATGCATCTTTGTAAA+TGG - 14702:12271-12290 MS.gene00817:intron 30.0%
CCTTAAAGTGAAATAGACTA+AGG + 14702:14232-14251 MS.gene00817:intergenic 30.0%
CCTTAGTCTATTTCACTTTA+AGG - 14702:14229-14248 MS.gene00817:intron 30.0%
CTAGATGATAACAGATAGAT+AGG + 14702:13068-13087 MS.gene00817:intergenic 30.0%
GACCTCAATAAAAATAAACG+TGG - 14702:12602-12621 MS.gene00817:intron 30.0%
GTTTGGAGAATTACATTCTT+TGG + 14702:13517-13536 MS.gene00817:intergenic 30.0%
TATGTATGCTTGTATTACAG+GGG - 14702:11884-11903 MS.gene00817:intron 30.0%
TGACCTTACATTCATTTGAT+GGG - 14702:14838-14857 MS.gene00817:CDS 30.0%
TTGACCTTACATTCATTTGA+TGG - 14702:14837-14856 MS.gene00817:CDS 30.0%
TTGTTGGTCAACAAAATTGT+AGG + 14702:13962-13981 MS.gene00817:intergenic 30.0%
! ACCTTGCCTTATTAATAAAC+AGG - 14702:14449-14468 MS.gene00817:intron 30.0%
! CAATTTTGTTGACCAACAAT+AGG - 14702:13963-13982 MS.gene00817:intron 30.0%
!! AGTTTGTGTATTTGGTGTAT+CGG - 14702:12742-12761 MS.gene00817:CDS 30.0%
AAACAAGAGCAGATGATTGA+AGG - 14702:12182-12201 MS.gene00817:intron 35.0%
AAAGCATACGAAGCTTGATA+TGG + 14702:14372-14391 MS.gene00817:intergenic 35.0%
AAGTCGCCAAAAATTGTTTG+AGG + 14702:13035-13054 MS.gene00817:intergenic 35.0%
ATTATTCCAGGGATGCTTAT+TGG - 14702:13669-13688 MS.gene00817:intron 35.0%
ATTTACGTACTTGAACAGTC+TGG + 14702:13799-13818 MS.gene00817:intergenic 35.0%
CAATGTTATTGCAGATGTAC+AGG - 14702:12153-12172 MS.gene00817:intron 35.0%
CACCGTAAATAAAAGAAGAG+AGG + 14702:13558-13577 MS.gene00817:intergenic 35.0%
CCTTAAAGTCTATTTCACGA+AGG - 14702:14187-14206 MS.gene00817:intron 35.0%
CCTTCGTGAAATAGACTTTA+AGG + 14702:14190-14209 MS.gene00817:intergenic 35.0%
GCCTGTTTATTAATAAGGCA+AGG + 14702:14453-14472 MS.gene00817:intergenic 35.0%
GGCTTGCCTGTTTATTAATA+AGG + 14702:14458-14477 MS.gene00817:intergenic 35.0%
GTGATAGAAGAAGTGGAATT+GGG + 14702:13900-13919 MS.gene00817:intergenic 35.0%
TAATGTGTGTTGTGTTAGTG+TGG - 14702:14687-14706 MS.gene00817:intron 35.0%
TAGAAAGGAGACTAATTGAG+AGG + 14702:13826-13845 MS.gene00817:intergenic 35.0%
TCTGATGAGAATCTAAACGA+CGG + 14702:11531-11550 MS.gene00817:intergenic 35.0%
! ACTTTTCTCTATCTTGGTCA+CGG + 14702:12460-12479 MS.gene00817:intergenic 35.0%
! ATCCTCTTTGATGGTATTCT+CGG - 14702:13770-13789 MS.gene00817:intron 35.0%
! TATTGGCTAGAGTCTTTCAA+TGG - 14702:13686-13705 MS.gene00817:intron 35.0%
!! CTCTCTTCTTTTATTTACGG+TGG - 14702:13556-13575 MS.gene00817:intron 35.0%
!! GTTTGTGTATTTGGTGTATC+GGG - 14702:12743-12762 MS.gene00817:CDS 35.0%
!! TAAGGTAATTAGCTTGCAAG+AGG + 14702:12057-12076 MS.gene00817:intergenic 35.0%
!! TCTTTTTGCTATGTGACTGA+TGG - 14702:13096-13115 MS.gene00817:intron 35.0%
!! TGAATTGATTTTGTCTTCGG+AGG - 14702:14583-14602 MS.gene00817:CDS 35.0%
!!! GACGTTACTTTTCTCTATCT+TGG + 14702:12466-12485 MS.gene00817:intergenic 35.0%
AAGCAAATCCTATCAGCACA+AGG + 14702:13187-13206 MS.gene00817:intergenic 40.0%
AGAGAGACATCATTTGTGTC+TGG + 14702:15030-15049 MS.gene00817:intergenic 40.0%
ATGTTCGATCAAAGTTGCCT+CGG - 14702:11590-11609 MS.gene00817:intron 40.0%
CACACTTACATCCTCTTTGA+TGG - 14702:13761-13780 MS.gene00817:intron 40.0%
CAGATAGTAGCTTGGAACAA+GGG + 14702:13486-13505 MS.gene00817:intergenic 40.0%
CCAAGCTACTATCTGAATCA+TGG - 14702:13491-13510 MS.gene00817:intron 40.0%
CCATGATTCAGATAGTAGCT+TGG + 14702:13494-13513 MS.gene00817:intergenic 40.0%
GACTAAGGTCTTACAGTGAT+AGG + 14702:14217-14236 MS.gene00817:intergenic 40.0%
GAGTCTTTCAATGGAACTCA+AGG - 14702:13695-13714 MS.gene00817:intron 40.0%
GGCAACTTTGATCGAACATA+AGG + 14702:11589-11608 MS.gene00817:intergenic 40.0%
GGTGATAGAAGAAGTGGAAT+TGG + 14702:13901-13920 MS.gene00817:intergenic 40.0%
TAGGTGTACGTAAGCATAAC+TGG - 14702:12421-12440 MS.gene00817:intron 40.0%
TCAGATAGTAGCTTGGAACA+AGG + 14702:13487-13506 MS.gene00817:intergenic 40.0%
TCTTCTTCTTCTCCTACTAG+CGG - 14702:11457-11476 MS.gene00817:CDS 40.0%
TGAAAAGTTCGCACATCAGA+AGG + 14702:11508-11527 MS.gene00817:intergenic 40.0%
TTCGAAGATATAACCAGGAG+AGG - 14702:14952-14971 MS.gene00817:CDS 40.0%
TTTACCAGCTGCAAAGAGAA+AGG - 14702:13418-13437 MS.gene00817:intron 40.0%
! ATTGAATGTTGGTTAAGGGC+GGG + 14702:14511-14530 MS.gene00817:intergenic 40.0%
! GATTGAATGTTGGTTAAGGG+CGG + 14702:14512-14531 MS.gene00817:intergenic 40.0%
! GTGGCTTTTGACATGAGATA+TGG + 14702:11955-11974 MS.gene00817:intergenic 40.0%
!! GAATCTTTGTTGGTCGCTTT+TGG + 14702:14935-14954 MS.gene00817:intergenic 40.0%
!! TGAAGAGAAAGAGTACCTGA+AGG + 14702:11977-11996 MS.gene00817:intergenic 40.0%
!! TGTGTTGGTGATAGAAGAAG+TGG + 14702:13907-13926 MS.gene00817:intergenic 40.0%
ACAAAGCAACGGTGAAGATC+TGG + 14702:11628-11647 MS.gene00817:intergenic 45.0%
AGCTGCAAAGAGAAAGGACA+TGG - 14702:13424-13443 MS.gene00817:intron 45.0%
AGGCTCAGACCTATCAAAGT+CGG + 14702:13995-14014 MS.gene00817:intergenic 45.0%
AGGTCAGATCCGACTTTGAT+AGG - 14702:13983-14002 MS.gene00817:intron 45.0%
AGTCGGATCTGACCTATTGT+TGG + 14702:13978-13997 MS.gene00817:intergenic 45.0%
ATAGGTCATACGGGCCTATA+AGG + 14702:14487-14506 MS.gene00817:intergenic 45.0%
ATGTCCTTTCTCTTTGCAGC+TGG + 14702:13425-13444 MS.gene00817:intergenic 45.0%
CTCCGAGAATACCATCAAAG+AGG + 14702:13775-13794 MS.gene00817:intergenic 45.0%
CTTGCAAGAGGTGGAAAGAA+TGG + 14702:12045-12064 MS.gene00817:intergenic 45.0%
GAACTGCATGCACAAAGCAA+CGG + 14702:11639-11658 MS.gene00817:intergenic 45.0%
GCACATCAGAAGGTTGTGAA+GGG + 14702:11498-11517 MS.gene00817:intergenic 45.0%
GCTTTGTGCATGCAGTTCAA+AGG - 14702:11641-11660 MS.gene00817:intron 45.0%
TAGGTCATACGGGCCTATAA+GGG + 14702:14486-14505 MS.gene00817:intergenic 45.0%
TCATGTCAAAAGCCACCTTC+AGG - 14702:11959-11978 MS.gene00817:intron 45.0%
! CTCTTTGATGGTATTCTCGG+AGG - 14702:13773-13792 MS.gene00817:intron 45.0%
! GGTGCTTTTAGACTCATCTC+TGG + 14702:11556-11575 MS.gene00817:intergenic 45.0%
! TCATTCCGTTTTGCTCCTCA+GGG - 14702:14907-14926 MS.gene00817:CDS 45.0%
! TTCATTCCGTTTTGCTCCTC+AGG - 14702:14906-14925 MS.gene00817:CDS 45.0%
!! AGAGAAAGAGTACCTGAAGG+TGG + 14702:11974-11993 MS.gene00817:intergenic 45.0%
!! GATGAGTCTAAAAGCACCTG+TGG - 14702:11558-11577 MS.gene00817:CDS 45.0%
!! GGTAATTAGCTTGCAAGAGG+TGG + 14702:12054-12073 MS.gene00817:intergenic 45.0%
!! AGAAATTTAAATTAAAAAAT+AGG + 14702:11726-11745 MS.gene00817:intergenic 5.0%
!!! AAATAAATTTTAATCAATAA+GGG + 14702:14794-14813 MS.gene00817:intergenic 5.0%
AAGGGCGGGAATAGGTCATA+CGG + 14702:14497-14516 MS.gene00817:intergenic 50.0%
ATTCACTCTCTCTCCTCTCC+TGG + 14702:14968-14987 MS.gene00817:intergenic 50.0%
CATGCAGTTCAAAGGCTTGG+AGG - 14702:11649-11668 MS.gene00817:intron 50.0%
CCTATCAGCACAAGGTGTAC+CGG + 14702:13179-13198 MS.gene00817:intergenic 50.0%
CGAACATAAGGTCTCACCAC+AGG + 14702:11577-11596 MS.gene00817:intergenic 50.0%
CGCACATCAGAAGGTTGTGA+AGG + 14702:11499-11518 MS.gene00817:intergenic 50.0%
CTCTAGCCAATAAGCATCCC+TGG + 14702:13678-13697 MS.gene00817:intergenic 50.0%
GTGCATGCAGTTCAAAGGCT+TGG - 14702:11646-11665 MS.gene00817:intron 50.0%
TACGGGCCTATAAGGGTCTA+CGG + 14702:14479-14498 MS.gene00817:intergenic 50.0%
TTCTCCTACTAGCGGAGTTG+TGG - 14702:11465-11484 MS.gene00817:CDS 50.0%
! CATTCCGTTTTGCTCCTCAG+GGG - 14702:14908-14927 MS.gene00817:CDS 50.0%
! TGTTGGTTAAGGGCGGGAAT+AGG + 14702:14505-14524 MS.gene00817:intergenic 50.0%
!! ACCTCCTGAGCTTGTTGATG+GGG + 14702:15007-15026 MS.gene00817:intergenic 50.0%
!! GACCTCCTGAGCTTGTTGAT+GGG + 14702:15008-15027 MS.gene00817:intergenic 50.0%
AGGGCGGGAATAGGTCATAC+GGG + 14702:14496-14515 MS.gene00817:intergenic 55.0%
CAAAGTTGCCTCGGCTTCGT+TGG - 14702:11599-11618 MS.gene00817:intron 55.0%
CTGTCCCCATCAACAAGCTC+AGG - 14702:15000-15019 MS.gene00817:CDS 55.0%
GGCAAGCCGTAGACCCTTAT+AGG - 14702:14470-14489 MS.gene00817:intron 55.0%
GTAGCTTGGAACAAGGGCTG+AGG + 14702:13480-13499 MS.gene00817:intergenic 55.0%
GTGTCCACAACTCCGCTAGT+AGG + 14702:11472-11491 MS.gene00817:intergenic 55.0%
TCCCCATCAACAAGCTCAGG+AGG - 14702:15003-15022 MS.gene00817:CDS 55.0%
TGGTCCCCTGAGGAGCAAAA+CGG + 14702:14915-14934 MS.gene00817:intergenic 55.0%
! CCGGTACACCTTGTGCTGAT+AGG - 14702:13176-13195 MS.gene00817:intron 55.0%
!! GGACCTCCTGAGCTTGTTGA+TGG + 14702:15009-15028 MS.gene00817:intergenic 55.0%
GCTTGGAACAAGGGCTGAGG+AGG + 14702:13477-13496 MS.gene00817:intergenic 60.0%
TCTGGTGTCCAACGAAGCCG+AGG + 14702:11610-11629 MS.gene00817:intergenic 60.0%
!!! TGGTCGCTTTTGGTCCCCTG+AGG + 14702:14925-14944 MS.gene00817:intergenic 60.0%


Chromosome Type Strat End Strand Name
14702 gene 11445 15068 11445 ID=MS.gene00817
14702 mRNA 11445 15068 11445 ID=MS.gene00817.t1;Parent=MS.gene00817
14702 exon 14834 15068 14834 ID=MS.gene00817.t1.exon1;Parent=MS.gene00817.t1
14702 CDS 14834 15068 14834 ID=cds.MS.gene00817.t1;Parent=MS.gene00817.t1
14702 exon 14533 14609 14533 ID=MS.gene00817.t1.exon2;Parent=MS.gene00817.t1
14702 CDS 14533 14609 14533 ID=cds.MS.gene00817.t1;Parent=MS.gene00817.t1
14702 exon 14310 14346 14310 ID=MS.gene00817.t1.exon3;Parent=MS.gene00817.t1
14702 CDS 14310 14346 14310 ID=cds.MS.gene00817.t1;Parent=MS.gene00817.t1
14702 exon 12991 13087 12991 ID=MS.gene00817.t1.exon4;Parent=MS.gene00817.t1
14702 CDS 12991 13087 12991 ID=cds.MS.gene00817.t1;Parent=MS.gene00817.t1
14702 exon 12705 12834 12705 ID=MS.gene00817.t1.exon5;Parent=MS.gene00817.t1
14702 CDS 12705 12834 12705 ID=cds.MS.gene00817.t1;Parent=MS.gene00817.t1
14702 exon 11445 11585 11445 ID=MS.gene00817.t1.exon6;Parent=MS.gene00817.t1
14702 CDS 11445 11585 11445 ID=cds.MS.gene00817.t1;Parent=MS.gene00817.t1
Gene Sequence

>MS.gene00817

ATGTCTTCATCTTCTTCTTCTTCTCCTACTAGCGGAGTTGTGGACACTAACCCTTCACAACCTTCTGATGTGCGAACTTTTCACCGTCGTTTAGATTCTCATCAGACTCCAGAGATGAGTCTAAAAGCACCTGTGGTGAGACCTTATGTTCGATCAAAGTTGCCTCGGCTTCGTTGGACACCAGATCTTCACCGTTGCTTTGTGCATGCAGTTCAAAGGCTTGGAGGAGAAGAGAGTAAGCTACCCTAGTTCTTTTATTCAATATTATATACTTAGATCCTATTTTTTAATTTAAATTTCTCTCTCTATATATAATAATCACAAGTGATTGATCATGTCTTAAAAAAATCTTGACTTTCAATTGCCATCTACTATTAAAAAAATCATTCCTTTGTTGTTAATTTGACTTGAAAACATTATTTTTGGTTTTAATAATTTATATGTATGCTTGTATTACAGGGGCTACACCAAAGTTAGTTTTACAATTCATGAATATCAAGGGGCTTACCATATCTCATGTCAAAAGCCACCTTCAGGTACTCTTTCTCTTCATCTAAATAATTAACCACTAAAAATGTTTGATTAATAAAAAAAAAACCATTCTTTCCACCTCTTGCAAGCTAATTACCTTATTTATGTTCGTTTTTTTAAATAAATAAAAATAATAATTTTGTACCAAATTTTTTTTTCCCTAAAATTTTGAAATTTCAATGTTATTGCAGATGTACAGGAGCATGAAACAAGAGCAGATGATTGAAGGTATTACTAATATTAATTGTGGTGTAGTACTGTTTAATTAAATGCATGTTATCATGTCACGGAAACACATGTATGCATCTTTGTAAATGGAAGAAATAGGTTGATGAAGAATACATTAGACATATTGTTTGGTACAATAGAGGAAATTTTAGATCTGTGAATACATCTATATTTAGTGACACATTATGCGAAGAAAATAATAGAACAAAACAAGAAATAGGTGTACGTAAGCATAACTGGTTGATTCTTTATTCCGTGACCAAGATAGAGAAAAGTAACGTCAAATATTCTTCCAGATTTTGTTCCTAGAAAAATACATCATTTTGTGTTGGACTGCTACTCTACTTTCGTCATATCAGAGTTGTCTCACGCTGAAATTTTTTCCCAAAGAAATTATAGACCTCAATAAAAATAAACGTGGTAGAAGTAGAATTTTTTATTACAGGAAAAAGTTAACGAGTGTCCTCAGAACACTTTTTTAAAACTTTAGATGATATGTTTCAAAAAAAAAAAAATTTAGACTGTAAGTTTTTATAAAAGTTTGTGTATTTGGTGTATCGGGAATTGAAATATTTGACTTTATTACAGAATAATTAATTAAAATACTTTGTGTATTTTAACTTTGATGAATATGTTATTTTTATGTAGATATTCAGTTTCATACTTTAGATAAGTCAAGATATTATTTTCTAAAATGTTTACAAAATATCTAAATAGTGAAATTTGATTGGATGTTTGTATAAAATTATTTTACACTATTAGTGTTTACAAATTAAAATTTACATATATAAATTATGATAGTTCCTGAAACAGTTTTTTGAATATGTTCCTCAAACAATTTTTGGCGACTTAATCCTATTCCCTATCTATCTGTTATCATCTAGATTGTTTCTCTTTTTGCTATGTGACTGATGGTTATAATTATACTTTATCAAGTCTTTTTGTGGTTACATATACTTTATCAAGTCTTATCCGGTACACCTTGTGCTGATAGGATTTGCTTCAGTTGTTTAACATATTTCTCTTTTTGCCTGTTAAAAAAATATACATTTAGTGCTTGAAACATCTTTACAAATATCCACATTATGATATGTGATTCAATGGATGTAAAATAATTACAATGACAGTCTAACACTGCATGCATACAAATTAAATTCATAATTTATCTTATAACATCAGAATTGTAATAGAGTAATTTGATATAAATTTATATATTTACCAGCTGCAAAGAGAAAGGACATGGCAGCTGATTTATCAGTTTCAGCAATCTCCTCCTCAGCCCTTGTTCCAAGCTACTATCTGAATCATGGCCAAAGAATGTAATTCTCCAAACTTTCTTTTTTTTATCGTTCCTCTCTTCTTTTATTTACGGTGGCTATAATTCTTTGAACTTTATATTTTGCATTATAATTTCAGAATTTTATCTCTTCTTTACAATGCATATAATTTTGGAATTTCTCTCTTAATTATTCCAGGGATGCTTATTGGCTAGAGTCTTTCAATGGAACTCAAGGTAATCAATCAATTGTGATCTGTAATGGAGATGAGCAGAAGATGCACACTTACATCCTCTTTGATGGTATTCTCGGAGGCCAGACTGTTCAAGTACGTAAATCATTCCTCTCAATTAGTCTCCTTTCTACATACTAATACTATGTTGAGATAAAATATTTATATAAACTACTTTGAGGATCCCAATTCCACTTCTTCTATCACCAACACACAAACACATTTTTTTTTTTAAAATCGTTGTATCCTACAATTTTGTTGACCAACAATAGGTCAGATCCGACTTTGATAGGTCTGAGCCTGACCTACAAAAAATTTGTAAGTCTTAGTATGACTTATGACCTTTTGTAAGTTTTTTTTTTTGGTCCAGTCTATTTAAAAGTTTGATTAAACCTGAAAGCCTATTTACATGTTTATTTCATATTAAAGTCGTTAAATAATCTAATTTATCAACTTCTAAATAGACTCAACAAGCCTTAAAGTCTATTTCACGAAGGCTTACCTATCACTGTAAGACCTTAGTCTATTTCACTTTAAGGCCTTAAAGCCTATTTAAATAGTCCTTTATTTGAGTTGTTACTTGATTTTTATGTTAAATATAAATTCTATTTTGATAAAAGTAAAAATAAGTTTTAATAAAATGCATAAGCATGTCACCATATCAAGCTTCGTATGCTTTTTTGATAGTCTAAGCCCGAGCTATTTACTTAAATAAGTTTTTTTTTTTAAAGTCTAAACCTTGCCTTATTAATAAACAGGCAAGCCGTAGACCCTTATAGGCCCGTATGACCTATTCCCGCCCTTAACCAACATTCAATCATTTAATAACATGTTTTGTATTTATTTATTATGAAGATAATTTTTAAATTTTGAATTGATTTTGTCTTCGGAGGACAATTTTTTTTCTTTCTTTCTTTCTATTTTTGAACCACACATATTAATTATCACTAGTGTGTTATTTATTTATTTATTTATAATGTGTGTTGTGTTAGTGTGGTGTTGAATGTGTGACATCAAATATTACTATAATATTCCGTTTAACATATTTGCTCTTATTTGGTCCAATAAAATATATTTTCCCTTATTGATTAAAATTTATTTCAAATTGATTGCACTAAATTATATTGACCTTACATTCATTTGATGGGATTGAGTGAAAGTGTGTGTGCAAGAAATGCTACAAAACAATAATATTCATTCCGTTTTGCTCCTCAGGGGACCAAAAGCGACCAACAAAGATTCGAAGATATAACCAGGAGAGGAGAGAGAGTGAATGAAGACACAGTTCTGTCCCCATCAACAAGCTCAGGAGGTCCAGACACAAATGATGTCTCTCTTGAGCTCAAACTCAACTGA

Protein sequence

>MS.gene00817.t1

MSSSSSSSPTSGVVDTNPSQPSDVRTFHRRLDSHQTPEMSLKAPVVRPYVRSKLPRLRWTPDLHRCFVHAVQRLGGEERATPKLVLQFMNIKGLTISHVKSHLQMYRSMKQEQMIEAAKRKDMAADLSVSAISSSALVPSYYLNHGQRMDAYWLESFNGTQGNQSIVICNGDEQKMHTYILFDGILGGQTVQGTKSDQQRFEDITRRGERVNEDTVLSPSTSSGGPDTNDVSLELKLN