AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene008233

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008233.t1 MTR_4g102720 50.877 171 51 1 1 171 1 138 2.78e-54 181
MS.gene008233.t1 MTR_0402s0040 29.111 450 217 10 7 450 26 379 3.84e-46 167
MS.gene008233.t1 MTR_7g074790 45.402 174 76 2 2 174 5 160 3.46e-42 149
MS.gene008233.t1 MTR_5g039760 40.341 176 79 3 2 175 5 156 1.49e-36 133
MS.gene008233.t1 MTR_7g061980 52.212 113 53 1 4 115 7 119 7.81e-34 124
MS.gene008233.t1 MTR_5g015480 44.800 125 66 2 7 128 56 180 7.02e-21 92.4
MS.gene008233.t1 MTR_2g070590 39.048 105 61 2 7 108 17 121 2.27e-17 78.6
MS.gene008233.t1 MTR_0558s0020 31.633 196 106 7 3 175 35 225 2.80e-17 82.4
MS.gene008233.t1 MTR_1g083640 32.143 196 105 7 3 175 50 240 5.10e-17 81.6
MS.gene008233.t1 MTR_2g099430 44.828 87 47 1 30 115 26 112 5.67e-17 77.0
MS.gene008233.t1 MTR_2g014100 31.122 196 107 7 3 175 43 233 2.43e-16 79.0
MS.gene008233.t1 MTR_6g017200 44.304 79 43 1 7 84 58 136 3.60e-16 76.3
MS.gene008233.t1 MTR_1g057920 44.304 79 43 1 7 84 34 112 9.36e-15 71.2
MS.gene008233.t1 MTR_6g090505 24.342 304 165 8 36 276 5 306 3.73e-14 73.9
MS.gene008233.t1 MTR_6g051425 29.121 182 116 5 6 176 13 192 7.56e-14 72.8
MS.gene008233.t1 MTR_1g008290 36.283 113 69 2 64 176 9 118 9.81e-14 68.9
MS.gene008233.t1 MTR_7g113010 38.095 126 63 2 7 130 457 569 1.34e-13 73.6
MS.gene008233.t1 MTR_1g070355 28.500 200 123 5 13 206 80 265 2.70e-13 72.4
MS.gene008233.t1 MTR_4g069880 46.875 64 34 0 2 65 5 68 8.84e-13 63.5
MS.gene008233.t1 MTR_0337s0060 29.577 142 95 3 221 360 14 152 2.94e-12 66.6
MS.gene008233.t1 MTR_4g067290 36.220 127 72 4 6 130 55 174 3.23e-12 66.6
MS.gene008233.t1 MTR_4g067290 37.500 104 62 3 6 107 55 157 4.57e-12 66.2
MS.gene008233.t1 MTR_4g067290 36.220 127 72 4 6 130 75 194 5.57e-12 66.2
MS.gene008233.t1 MTR_4g067290 36.220 127 72 4 6 130 115 234 7.53e-12 66.6
MS.gene008233.t1 MTR_4g067290 37.500 104 62 3 6 107 75 177 8.27e-12 65.9
MS.gene008233.t1 MTR_4g067290 37.500 104 62 3 6 107 73 175 8.94e-12 65.5
MS.gene008233.t1 MTR_2g098920 36.893 103 62 3 6 106 79 180 1.07e-11 65.5
MS.gene008233.t1 MTR_1g013060 29.480 173 113 3 2 166 19 190 5.47e-11 62.8
MS.gene008233.t1 MTR_4g040430 29.586 169 95 6 3 152 34 197 6.63e-11 62.0
MS.gene008233.t1 MTR_1g019850 31.579 133 83 2 7 137 70 196 9.60e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008233.t1 AT3G22170 30.537 298 182 6 155 444 382 662 2.01e-34 137
MS.gene008233.t1 AT3G22170 30.537 298 182 6 155 444 382 662 2.01e-34 137
MS.gene008233.t1 AT4G15090 29.167 264 181 2 176 439 390 647 8.59e-32 129
MS.gene008233.t1 AT4G15090 25.758 198 131 5 4 198 48 232 4.12e-13 72.0
MS.gene008233.t1 AT4G15090 29.167 264 181 2 176 439 390 647 8.59e-32 129
MS.gene008233.t1 AT4G15090 25.758 198 131 5 4 198 48 232 4.12e-13 72.0
MS.gene008233.t1 AT4G15090 29.167 264 181 2 176 439 390 647 8.59e-32 129
MS.gene008233.t1 AT4G15090 25.758 198 131 5 4 198 48 232 4.12e-13 72.0
MS.gene008233.t1 AT4G15090 29.167 264 181 2 176 439 390 647 8.59e-32 129
MS.gene008233.t1 AT4G15090 25.758 198 131 5 4 198 48 232 4.12e-13 72.0
MS.gene008233.t1 AT4G15090 29.167 264 181 2 176 439 390 647 8.59e-32 129
MS.gene008233.t1 AT4G15090 25.758 198 131 5 4 198 48 232 4.12e-13 72.0
MS.gene008233.t1 AT4G38170 29.066 289 188 6 175 457 178 455 1.21e-31 127
MS.gene008233.t1 AT4G38180 34.071 226 141 3 176 397 414 635 9.84e-31 126
MS.gene008233.t1 AT4G38180 34.722 216 122 5 4 213 70 272 4.62e-25 109
MS.gene008233.t1 AT1G76320 28.621 290 191 5 155 442 310 585 4.26e-28 118
MS.gene008233.t1 AT1G76320 27.528 178 112 7 11 185 1 164 3.59e-11 65.9
MS.gene008233.t1 AT1G76320 28.621 290 191 5 155 442 310 585 4.31e-28 118
MS.gene008233.t1 AT1G76320 27.528 178 112 7 11 185 1 164 3.56e-11 65.9
MS.gene008233.t1 AT1G76320 28.621 290 191 5 155 442 310 585 4.31e-28 118
MS.gene008233.t1 AT1G76320 27.528 178 112 7 11 185 1 164 3.56e-11 65.9
MS.gene008233.t1 AT4G19990 31.660 259 162 4 177 429 339 588 4.56e-28 118
MS.gene008233.t1 AT4G19990 31.660 259 162 4 177 429 339 588 4.56e-28 118
MS.gene008233.t1 AT4G19990 31.660 259 162 4 177 429 282 531 5.94e-28 117
MS.gene008233.t1 AT1G76320 28.621 290 191 5 155 442 310 585 6.35e-28 117
MS.gene008233.t1 AT1G76320 27.528 178 112 7 11 185 1 164 3.46e-11 65.9
MS.gene008233.t1 AT4G19990 31.660 259 162 4 177 429 339 588 6.52e-28 117
MS.gene008233.t1 AT4G19990 31.660 259 162 4 177 429 339 588 6.52e-28 117
MS.gene008233.t1 AT4G19990 31.660 259 162 4 177 429 353 602 6.70e-28 117
MS.gene008233.t1 AT4G19990 31.660 259 162 4 177 429 339 588 7.47e-28 117
MS.gene008233.t1 AT1G80010 27.526 287 193 8 176 451 435 717 2.96e-27 115
MS.gene008233.t1 AT2G27110 28.195 266 184 4 176 440 361 620 2.58e-26 113
MS.gene008233.t1 AT2G27110 28.195 266 184 4 176 440 361 620 2.58e-26 113
MS.gene008233.t1 AT2G27110 28.195 266 184 4 176 440 216 475 2.83e-26 112
MS.gene008233.t1 AT5G18960 28.975 283 185 7 176 451 511 784 2.80e-25 109
MS.gene008233.t1 AT5G18960 28.975 283 185 7 176 451 511 784 2.80e-25 109
MS.gene008233.t1 AT3G06250 29.329 283 184 7 176 451 487 760 6.14e-25 108
MS.gene008233.t1 AT3G06250 29.329 283 184 7 176 451 487 760 6.14e-25 108
MS.gene008233.t1 AT3G06250 29.329 283 184 7 176 451 487 760 6.14e-25 108
MS.gene008233.t1 AT2G32250 23.944 284 210 2 177 460 294 571 9.97e-24 105
MS.gene008233.t1 AT2G32250 25.000 264 192 2 177 440 294 551 1.07e-23 105
MS.gene008233.t1 AT2G32250 24.906 265 193 2 176 440 334 592 1.09e-23 105
MS.gene008233.t1 AT2G32250 24.906 265 193 2 176 440 334 592 1.09e-23 105
MS.gene008233.t1 AT2G32250 24.906 265 193 2 176 440 334 592 1.09e-23 105
MS.gene008233.t1 AT2G32250 24.906 265 193 2 176 440 334 592 1.19e-23 104
MS.gene008233.t1 AT2G32250 24.906 265 193 2 176 440 334 592 1.19e-23 104
MS.gene008233.t1 AT2G32250 25.000 264 192 2 177 440 335 592 1.29e-23 104
MS.gene008233.t1 AT1G52520 24.101 278 197 3 186 451 420 695 3.34e-21 97.4
MS.gene008233.t1 AT1G10240 26.667 225 150 5 178 397 394 608 8.80e-18 86.7
MS.gene008233.t1 AT1G10240 26.667 225 150 5 178 397 394 608 8.80e-18 86.7
MS.gene008233.t1 AT5G28530 23.729 236 170 5 177 411 347 573 2.47e-13 72.8
MS.gene008233.t1 AT5G28530 29.825 171 112 5 5 168 53 222 8.32e-13 70.9
MS.gene008233.t1 AT5G28530 23.529 238 172 5 175 411 408 636 3.15e-13 72.4
MS.gene008233.t1 AT5G28530 29.825 171 112 5 5 168 53 222 7.99e-13 71.2
MS.gene008233.t1 AT5G28530 29.825 171 112 5 5 168 53 222 7.79e-13 71.2
MS.gene008233.t1 AT5G28530 24.153 236 165 6 177 411 347 569 1.07e-12 70.5
MS.gene008233.t1 AT5G28530 29.825 171 112 5 5 168 53 222 8.69e-13 70.9
MS.gene008233.t1 AT5G28530 23.950 238 167 6 175 411 408 632 1.41e-12 70.5
MS.gene008233.t1 AT5G28530 29.825 171 112 5 5 168 53 222 8.69e-13 70.9
MS.gene008233.t1 AT5G28530 23.950 238 167 6 175 411 408 632 1.41e-12 70.5
MS.gene008233.t1 AT3G59470 40.777 103 58 3 6 106 69 170 2.11e-11 64.7
MS.gene008233.t1 AT3G59470 40.777 103 58 3 6 106 69 170 2.11e-11 64.7
MS.gene008233.t1 AT3G59470 40.777 103 58 3 6 106 81 182 3.16e-11 64.3

Find 72 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCACCTCTTTAAAATATA+AGG 0.176322 3.1:-55519711 None:intergenic
TCTGAACACCATACTTTATA+AGG 0.212221 3.1:-55519140 None:intergenic
TGTCGTAAATTTGAGATCTT+TGG 0.224323 3.1:+55519627 MS.gene008233:CDS
TTGAAGATGCTTGGGAGTTC+TGG 0.234863 3.1:+55518101 MS.gene008233:CDS
GACAACATATGAGTTGTTTC+TGG 0.253501 3.1:-55518379 None:intergenic
AAATTTGTCCCCGCTTTATT+AGG 0.254015 3.1:+55519823 MS.gene008233:CDS
CCGAAAACCATATCTACTTT+TGG 0.265147 3.1:-55518073 None:intergenic
TTAAGAAACTCAACAGCTTC+TGG 0.265886 3.1:-55519870 None:intergenic
TATTGCTAAGAAAAGGAATA+TGG 0.279134 3.1:+55519554 MS.gene008233:CDS
TACGGTGGTAAGGTTGGATT+TGG 0.293440 3.1:+55518130 MS.gene008233:CDS
ATCTCCAGCACAATGTTATA+AGG 0.298579 3.1:+55519800 MS.gene008233:CDS
CCTTGCTTCACAATTTGTTC+TGG 0.300300 3.1:-55518281 None:intergenic
CTTAAAAGTCTTCATTCATA+TGG 0.313141 3.1:+55519668 MS.gene008233:CDS
ATGAAGAAGACTTTGACATT+AGG 0.337357 3.1:+55519219 MS.gene008233:CDS
ATGGTTCAGTTTCTTCTTGT+AGG 0.346032 3.1:+55518185 MS.gene008233:CDS
TGTACAGTATAAAGGAGAAA+TGG 0.347671 3.1:+55519184 MS.gene008233:CDS
ACATCCCTCCTTATAAAGTA+TGG 0.358569 3.1:+55519132 MS.gene008233:CDS
TAAGGAAGTTGCTGATGAAT+TGG 0.363801 3.1:+55519890 MS.gene008233:CDS
TGAAGAAGACTTTGACATTA+GGG 0.366463 3.1:+55519220 MS.gene008233:CDS
ACGGTGGTAAGGTTGGATTT+GGG 0.383690 3.1:+55518131 MS.gene008233:CDS
ATGGCAAGTGACCTTCGATT+TGG 0.384310 3.1:+55519581 MS.gene008233:CDS
TTTGTTCTGGTCTCTAGTCT+TGG 0.387348 3.1:-55518268 None:intergenic
TTGGAAGCCAAAAGTAGATA+TGG 0.391013 3.1:+55518066 MS.gene008233:CDS
GCAAAGAATGTACAGTATAA+AGG 0.392434 3.1:+55519176 MS.gene008233:CDS
TCGGTAGCTTTGAAGATGCT+TGG 0.398691 3.1:+55518092 MS.gene008233:CDS
CGGTAGCTTTGAAGATGCTT+GGG 0.400248 3.1:+55518093 MS.gene008233:CDS
GATACAAGATGAATGAAGAT+TGG 0.401677 3.1:+55518047 None:intergenic
AGCAGGAGGCAGAACTAACT+TGG 0.405107 3.1:+55518501 MS.gene008233:CDS
AGAAGCTGTTGAGTTTCTTA+AGG 0.410867 3.1:+55519872 MS.gene008233:CDS
GACTTTAAGAAATGCATGTA+TGG 0.419899 3.1:+55519075 MS.gene008233:intron
GTACAGTATAAAGGAGAAAT+GGG 0.433816 3.1:+55519185 MS.gene008233:CDS
GTAAGGTTGGATTTGGGGTG+AGG 0.435582 3.1:+55518137 MS.gene008233:CDS
AAGAACAATTTGAAGATGGT+TGG 0.449713 3.1:+55519109 MS.gene008233:CDS
CTTATGTTATTGCTAAGAAA+AGG 0.455599 3.1:+55519547 MS.gene008233:CDS
AGTAGAGCTTCACAAACTAT+TGG 0.464878 3.1:+55519747 MS.gene008233:CDS
CTCTTTAAAATATAAGGCTC+TGG 0.465021 3.1:-55519705 None:intergenic
AGGTTTGTTTGCTGCAAAGA+AGG 0.468354 3.1:+55518205 MS.gene008233:CDS
ACAAATTGTGAAGCAAGGTT+AGG 0.474466 3.1:+55518286 MS.gene008233:CDS
GAATACGAGTTCTTCAGTCT+TGG 0.477905 3.1:-55519402 None:intergenic
CGGTGGTAAGGTTGGATTTG+GGG 0.479970 3.1:+55518132 MS.gene008233:CDS
ATTTCCTTATAACATTGTGC+TGG 0.482058 3.1:-55519804 None:intergenic
ATTGCTAAGAAAAGGAATAT+GGG 0.487709 3.1:+55519555 MS.gene008233:CDS
TGGGAGTTCTGGAAAACTTA+CGG 0.491418 3.1:+55518112 MS.gene008233:CDS
TAGTCATGTTGCAGAAGACT+TGG 0.491651 3.1:+55519773 MS.gene008233:CDS
GAATGTGGATGGAAAATTGA+TGG 0.494783 3.1:+55518315 MS.gene008233:CDS
CTGGAAAACTTACGGTGGTA+AGG 0.495710 3.1:+55518120 MS.gene008233:CDS
CAAACAACTTATACTCATGT+TGG 0.498723 3.1:-55519479 None:intergenic
AGAAAAGGAATATGGGAGAA+TGG 0.505198 3.1:+55519562 MS.gene008233:CDS
GATGAAGAACAATTTGAAGA+TGG 0.510431 3.1:+55519105 MS.gene008233:CDS
AATAGTAGGAGTATAAAGCT+TGG 0.523378 3.1:-55519445 None:intergenic
TATGTTGTCTTCTCAACGAA+AGG 0.532534 3.1:+55518393 MS.gene008233:CDS
AAAACTTACGGTGGTAAGGT+TGG 0.535426 3.1:+55518124 MS.gene008233:CDS
CGATTTCCTTTGTTGTACAC+CGG 0.540939 3.1:-55518458 None:intergenic
TGTGACGATCCTAATAAAGC+GGG 0.542482 3.1:-55519832 None:intergenic
TTAGGACTTAAGAATGTGGA+TGG 0.548535 3.1:+55518304 MS.gene008233:CDS
GATTTACTGAGTAAAGAAGC+AGG 0.550187 3.1:+55518484 MS.gene008233:CDS
AAGATGTTGTAGAAGAAAAG+CGG 0.551004 3.1:+55519337 MS.gene008233:CDS
GAACACCATACTTTATAAGG+AGG 0.576736 3.1:-55519137 None:intergenic
TTTATTAGGATCGTCACAGA+AGG 0.594701 3.1:+55519837 MS.gene008233:CDS
GCAAATGTAACTCGTGGTTG+TGG 0.597490 3.1:-55518357 None:intergenic
AACACCATACTTTATAAGGA+GGG 0.603443 3.1:-55519136 None:intergenic
GCAGGAGGCAGAACTAACTT+GGG 0.606477 3.1:+55518502 MS.gene008233:CDS
CCAGAACAAATTGTGAAGCA+AGG 0.610911 3.1:+55518281 MS.gene008233:CDS
CTGTGACGATCCTAATAAAG+CGG 0.623114 3.1:-55519833 None:intergenic
ATTGAACTAGCTGATAATGC+CGG 0.634362 3.1:+55518439 MS.gene008233:CDS
ATAATGCCGGTGTACAACAA+AGG 0.648238 3.1:+55518452 MS.gene008233:CDS
TTTCTGGCAAATGTAACTCG+TGG 0.662245 3.1:-55518363 None:intergenic
AGCATGCTTTGTGAAAAGCA+TGG 0.679180 3.1:+55519503 MS.gene008233:CDS
AAGGTTAGGACTTAAGAATG+TGG 0.679784 3.1:+55518300 MS.gene008233:CDS
GTGACGATCCTAATAAAGCG+GGG 0.705450 3.1:-55519831 None:intergenic
TTACTGAGTAAAGAAGCAGG+AGG 0.758361 3.1:+55518487 MS.gene008233:CDS
GAGTTCTGGAAAACTTACGG+TGG 0.762461 3.1:+55518115 MS.gene008233:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAAAATTTTATGAGTA+AGG + chr3.1:55519281-55519300 MS.gene008233:CDS 10.0%
!! AAAAAAAAGAGAAAGAAGTT+TGG + chr3.1:55518558-55518577 MS.gene008233:CDS 20.0%
!!! TTGATTGATTACAGTTATTT+TGG + chr3.1:55518712-55518731 MS.gene008233:intron 20.0%
! ACACTTAGGAAATTTAATGA+AGG + chr3.1:55519032-55519051 MS.gene008233:intron 25.0%
! ACTTAGGAAATTTAATGAAG+GGG + chr3.1:55519034-55519053 MS.gene008233:intron 25.0%
! AGATTATACACACAGAAAAA+AGG + chr3.1:55518162-55518181 MS.gene008233:CDS 25.0%
! ATTGCTAAGAAAAGGAATAT+GGG + chr3.1:55519555-55519574 MS.gene008233:CDS 25.0%
! CAAAATGGAATTAAACACTT+AGG + chr3.1:55519018-55519037 MS.gene008233:intron 25.0%
! CACTTAGGAAATTTAATGAA+GGG + chr3.1:55519033-55519052 MS.gene008233:intron 25.0%
! CTTAAAAGTCTTCATTCATA+TGG + chr3.1:55519668-55519687 MS.gene008233:CDS 25.0%
! CTTATGTTATTGCTAAGAAA+AGG + chr3.1:55519547-55519566 MS.gene008233:CDS 25.0%
! TATTGCTAAGAAAAGGAATA+TGG + chr3.1:55519554-55519573 MS.gene008233:CDS 25.0%
! TGGAATAAGTCAAAAATAGT+AGG - chr3.1:55519462-55519481 None:intergenic 25.0%
!! AAATTTTATGAGTAAGGACT+TGG + chr3.1:55519287-55519306 MS.gene008233:CDS 25.0%
AACACCATACTTTATAAGGA+GGG - chr3.1:55519139-55519158 None:intergenic 30.0%
AAGAACAATTTGAAGATGGT+TGG + chr3.1:55519109-55519128 MS.gene008233:CDS 30.0%
AAGATGTTGTAGAAGAAAAG+CGG + chr3.1:55519337-55519356 MS.gene008233:CDS 30.0%
ATGAAGAAGACTTTGACATT+AGG + chr3.1:55519219-55519238 MS.gene008233:CDS 30.0%
ATGGTGTTCAGAAAAATGAT+TGG + chr3.1:55519151-55519170 MS.gene008233:CDS 30.0%
ATTTCCTTATAACATTGTGC+TGG - chr3.1:55519807-55519826 None:intergenic 30.0%
CAAACAACTTATACTCATGT+TGG - chr3.1:55519482-55519501 None:intergenic 30.0%
CTTAGGAAATTTAATGAAGG+GGG + chr3.1:55519035-55519054 MS.gene008233:intron 30.0%
GATGAAGAACAATTTGAAGA+TGG + chr3.1:55519105-55519124 MS.gene008233:CDS 30.0%
GCAAAGAATGTACAGTATAA+AGG + chr3.1:55519176-55519195 MS.gene008233:CDS 30.0%
GTACAGTATAAAGGAGAAAT+GGG + chr3.1:55519185-55519204 MS.gene008233:CDS 30.0%
TACTGATCAAGACAAATCAA+TGG + chr3.1:55518933-55518952 MS.gene008233:intron 30.0%
TATACACACAGAAAAAAGGA+TGG + chr3.1:55518166-55518185 MS.gene008233:CDS 30.0%
TCTGAACACCATACTTTATA+AGG - chr3.1:55519143-55519162 None:intergenic 30.0%
TGAAGAAGACTTTGACATTA+GGG + chr3.1:55519220-55519239 MS.gene008233:CDS 30.0%
TGTACAGTATAAAGGAGAAA+TGG + chr3.1:55519184-55519203 MS.gene008233:CDS 30.0%
! AATAGTAGGAGTATAAAGCT+TGG - chr3.1:55519448-55519467 None:intergenic 30.0%
! CCAAAAGTAGATATGGTTTT+CGG + chr3.1:55518073-55518092 MS.gene008233:CDS 30.0%
! GACTTTAAGAAATGCATGTA+TGG + chr3.1:55519075-55519094 MS.gene008233:intron 30.0%
! TGTATTCTTTTCCAAATCGA+AGG - chr3.1:55519595-55519614 None:intergenic 30.0%
! TGTCGTAAATTTGAGATCTT+TGG + chr3.1:55519627-55519646 MS.gene008233:CDS 30.0%
!! AGCCTTATATTTTAAAGAGG+TGG + chr3.1:55519709-55519728 MS.gene008233:CDS 30.0%
!! CAGAGCCTTATATTTTAAAG+AGG + chr3.1:55519706-55519725 MS.gene008233:CDS 30.0%
!! CTCTTTAAAATATAAGGCTC+TGG - chr3.1:55519708-55519727 None:intergenic 30.0%
!! GTCCACCTCTTTAAAATATA+AGG - chr3.1:55519714-55519733 None:intergenic 30.0%
!!! TCTTCAGTCTTGGAATTTTT+TGG - chr3.1:55519395-55519414 None:intergenic 30.0%
AAGGTTAGGACTTAAGAATG+TGG + chr3.1:55518300-55518319 MS.gene008233:CDS 35.0%
ACAAATTGTGAAGCAAGGTT+AGG + chr3.1:55518286-55518305 MS.gene008233:CDS 35.0%
ACATCCCTCCTTATAAAGTA+TGG + chr3.1:55519132-55519151 MS.gene008233:CDS 35.0%
AGAAAAGGAATATGGGAGAA+TGG + chr3.1:55519562-55519581 MS.gene008233:CDS 35.0%
AGAAAGAAGTTTGGTACAAG+GGG + chr3.1:55518567-55518586 MS.gene008233:intron 35.0%
AGAAGCTGTTGAGTTTCTTA+AGG + chr3.1:55519872-55519891 MS.gene008233:CDS 35.0%
AGAGAAAGAAGTTTGGTACA+AGG + chr3.1:55518565-55518584 MS.gene008233:intron 35.0%
AGTAGAGCTTCACAAACTAT+TGG + chr3.1:55519747-55519766 MS.gene008233:CDS 35.0%
ATCTCCAGCACAATGTTATA+AGG + chr3.1:55519800-55519819 MS.gene008233:CDS 35.0%
ATGGTTCAGTTTCTTCTTGT+AGG + chr3.1:55518185-55518204 MS.gene008233:CDS 35.0%
CAATATCTAGCTGATAAGCA+TGG - chr3.1:55518651-55518670 None:intergenic 35.0%
GAACACCATACTTTATAAGG+AGG - chr3.1:55519140-55519159 None:intergenic 35.0%
GAATGTGGATGGAAAATTGA+TGG + chr3.1:55518315-55518334 MS.gene008233:CDS 35.0%
GAGAAAGAAGTTTGGTACAA+GGG + chr3.1:55518566-55518585 MS.gene008233:intron 35.0%
GATTTACTGAGTAAAGAAGC+AGG + chr3.1:55518484-55518503 MS.gene008233:CDS 35.0%
TAAGGAAGTTGCTGATGAAT+TGG + chr3.1:55519890-55519909 MS.gene008233:CDS 35.0%
TATGTTGTCTTCTCAACGAA+AGG + chr3.1:55518393-55518412 MS.gene008233:CDS 35.0%
TGATAAGCATGGTAGAAAGT+TGG - chr3.1:55518640-55518659 None:intergenic 35.0%
TTAAGAAACTCAACAGCTTC+TGG - chr3.1:55519873-55519892 None:intergenic 35.0%
TTAGGACTTAAGAATGTGGA+TGG + chr3.1:55518304-55518323 MS.gene008233:CDS 35.0%
TTGGAAGCCAAAAGTAGATA+TGG + chr3.1:55518066-55518085 MS.gene008233:CDS 35.0%
TTTATTAGGATCGTCACAGA+AGG + chr3.1:55519837-55519856 MS.gene008233:CDS 35.0%
! AAATTTGTCCCCGCTTTATT+AGG + chr3.1:55519823-55519842 MS.gene008233:CDS 35.0%
! ATCAGATCACCAATGTGTTT+TGG + chr3.1:55518674-55518693 MS.gene008233:intron 35.0%
! ATTGAACTAGCTGATAATGC+CGG + chr3.1:55518439-55518458 MS.gene008233:CDS 35.0%
! CCGAAAACCATATCTACTTT+TGG - chr3.1:55518076-55518095 None:intergenic 35.0%
! GACAACATATGAGTTGTTTC+TGG - chr3.1:55518382-55518401 None:intergenic 35.0%
! TCAGATCACCAATGTGTTTT+GGG + chr3.1:55518675-55518694 MS.gene008233:intron 35.0%
!!! ATTGATGGTGCATGATTTTG+TGG + chr3.1:55518330-55518349 MS.gene008233:CDS 35.0%
AAAACTTACGGTGGTAAGGT+TGG + chr3.1:55518124-55518143 MS.gene008233:CDS 40.0%
ACATAAACCATGGTAAGCTC+CGG - chr3.1:55518983-55519002 None:intergenic 40.0%
AGCATGCTTTGTGAAAAGCA+TGG + chr3.1:55519503-55519522 MS.gene008233:CDS 40.0%
ATAATGCCGGTGTACAACAA+AGG + chr3.1:55518452-55518471 MS.gene008233:CDS 40.0%
CAAAAATTACAGCTCCTCGA+TGG - chr3.1:55518816-55518835 None:intergenic 40.0%
CCAGAACAAATTGTGAAGCA+AGG + chr3.1:55518281-55518300 MS.gene008233:CDS 40.0%
CTGTGACGATCCTAATAAAG+CGG - chr3.1:55519836-55519855 None:intergenic 40.0%
CTTACCATGGTTTATGTACG+TGG + chr3.1:55518986-55519005 MS.gene008233:intron 40.0%
GAATACGAGTTCTTCAGTCT+TGG - chr3.1:55519405-55519424 None:intergenic 40.0%
TAGTCATGTTGCAGAAGACT+TGG + chr3.1:55519773-55519792 MS.gene008233:CDS 40.0%
TGTGACGATCCTAATAAAGC+GGG - chr3.1:55519835-55519854 None:intergenic 40.0%
TTACTGAGTAAAGAAGCAGG+AGG + chr3.1:55518487-55518506 MS.gene008233:CDS 40.0%
TTTGTTCTGGTCTCTAGTCT+TGG - chr3.1:55518271-55518290 None:intergenic 40.0%
! AGGTTTGTTTGCTGCAAAGA+AGG + chr3.1:55518205-55518224 MS.gene008233:CDS 40.0%
! CATCGAGGAGCTGTAATTTT+TGG + chr3.1:55518814-55518833 MS.gene008233:intron 40.0%
! CCTTGCTTCACAATTTGTTC+TGG - chr3.1:55518284-55518303 None:intergenic 40.0%
! CGATTTCCTTTGTTGTACAC+CGG - chr3.1:55518461-55518480 None:intergenic 40.0%
! GTTTTATGATCTCGCTTGTC+TGG - chr3.1:55518241-55518260 None:intergenic 40.0%
! TTTCTGGCAAATGTAACTCG+TGG - chr3.1:55518366-55518385 None:intergenic 40.0%
!! TGGGAGTTCTGGAAAACTTA+CGG + chr3.1:55518112-55518131 MS.gene008233:CDS 40.0%
AAACTGCTGAGTCATACGAG+TGG + chr3.1:55518857-55518876 MS.gene008233:intron 45.0%
AAATTACAGCTCCTCGATGG+TGG - chr3.1:55518813-55518832 None:intergenic 45.0%
AAGAAGTTTGGTACAAGGGG+AGG + chr3.1:55518570-55518589 MS.gene008233:intron 45.0%
AATCCCGAGATGATTGCTAG+TGG - chr3.1:55518787-55518806 None:intergenic 45.0%
ACGGTGGTAAGGTTGGATTT+GGG + chr3.1:55518131-55518150 MS.gene008233:CDS 45.0%
ACGTGGCACTTGATGCAAAA+TGG + chr3.1:55519003-55519022 MS.gene008233:intron 45.0%
AGACCACTAGCAATCATCTC+GGG + chr3.1:55518781-55518800 MS.gene008233:intron 45.0%
AGCATCTGCCCAAAACACAT+TGG - chr3.1:55518686-55518705 None:intergenic 45.0%
AGTGCCACGTACATAAACCA+TGG - chr3.1:55518993-55519012 None:intergenic 45.0%
ATGGCAAGTGACCTTCGATT+TGG + chr3.1:55519581-55519600 MS.gene008233:CDS 45.0%
CAGACCACTAGCAATCATCT+CGG + chr3.1:55518780-55518799 MS.gene008233:intron 45.0%
CATAAACCATGGTAAGCTCC+GGG - chr3.1:55518982-55519001 None:intergenic 45.0%
CTGGAAAACTTACGGTGGTA+AGG + chr3.1:55518120-55518139 MS.gene008233:CDS 45.0%
GCAAATGTAACTCGTGGTTG+TGG - chr3.1:55518360-55518379 None:intergenic 45.0%
GTGACGATCCTAATAAAGCG+GGG - chr3.1:55519834-55519853 None:intergenic 45.0%
TACGGTGGTAAGGTTGGATT+TGG + chr3.1:55518130-55518149 MS.gene008233:CDS 45.0%
TTGAAGATGCTTGGGAGTTC+TGG + chr3.1:55518101-55518120 MS.gene008233:CDS 45.0%
! GATGGTGCATGATTTTGTGG+AGG + chr3.1:55518333-55518352 MS.gene008233:CDS 45.0%
!! AATGGCAAAAGCATTAGCCG+AGG + chr3.1:55518951-55518970 MS.gene008233:intron 45.0%
!! ATGTGTTTTGGGCAGATGCT+AGG + chr3.1:55518686-55518705 MS.gene008233:intron 45.0%
!! CGGTAGCTTTGAAGATGCTT+GGG + chr3.1:55518093-55518112 MS.gene008233:CDS 45.0%
!! GAGTTCTGGAAAACTTACGG+TGG + chr3.1:55518115-55518134 MS.gene008233:CDS 45.0%
!! TCGGTAGCTTTGAAGATGCT+TGG + chr3.1:55518092-55518111 MS.gene008233:CDS 45.0%
AGCAGGAGGCAGAACTAACT+TGG + chr3.1:55518501-55518520 MS.gene008233:CDS 50.0%
CGGTGGTAAGGTTGGATTTG+GGG + chr3.1:55518132-55518151 MS.gene008233:CDS 50.0%
GCAGGAGGCAGAACTAACTT+GGG + chr3.1:55518502-55518521 MS.gene008233:CDS 50.0%
TCGGGATTTAACCACCATCG+AGG + chr3.1:55518799-55518818 MS.gene008233:intron 50.0%
! GTAAGGTTGGATTTGGGGTG+AGG + chr3.1:55518137-55518156 MS.gene008233:CDS 50.0%
AGTTTGGTACAAGGGGAGGC+TGG + chr3.1:55518574-55518593 MS.gene008233:intron 55.0%
GCATTAGCCGAGGTTATGCC+CGG + chr3.1:55518961-55518980 MS.gene008233:intron 55.0%
GTAAGCTCCGGGCATAACCT+CGG - chr3.1:55518971-55518990 None:intergenic 55.0%
GTTATGCCCGGAGCTTACCA+TGG + chr3.1:55518973-55518992 MS.gene008233:intron 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 55518055 55519953 55518055 ID=MS.gene008233
chr3.1 mRNA 55518055 55519953 55518055 ID=MS.gene008233.t1;Parent=MS.gene008233
chr3.1 exon 55518055 55518579 55518055 ID=MS.gene008233.t1.exon1;Parent=MS.gene008233.t1
chr3.1 CDS 55518055 55518579 55518055 ID=cds.MS.gene008233.t1;Parent=MS.gene008233.t1
chr3.1 exon 55519084 55519953 55519084 ID=MS.gene008233.t1.exon2;Parent=MS.gene008233.t1
chr3.1 CDS 55519084 55519953 55519084 ID=cds.MS.gene008233.t1;Parent=MS.gene008233.t1
Gene Sequence

>MS.gene008233

ATGAATGAAGATTGGAAGCCAAAAGTAGATATGGTTTTCGGTAGCTTTGAAGATGCTTGGGAGTTCTGGAAAACTTACGGTGGTAAGGTTGGATTTGGGGTGAGGAAAGATTATACACACAGAAAAAAGGATGGTTCAGTTTCTTCTTGTAGGTTTGTTTGCTGCAAAGAAGGCATACGAAAGCCAGACAAGCGAGATCATAAAACAAAGAATCCAAGACTAGAGACCAGAACAAATTGTGAAGCAAGGTTAGGACTTAAGAATGTGGATGGAAAATTGATGGTGCATGATTTTGTGGAGGACCACAACCACGAGTTACATTTGCCAGAAACAACTCATATGTTGTCTTCTCAACGAAAGGTTTCTGAAATTCAATGTCAACAAATTGAACTAGCTGATAATGCCGGTGTACAACAAAGGAAATCGTTTGATTTACTGAGTAAAGAAGCAGGAGGCAGAACTAACTTGGGTTTTATTCGTCTTGATCAAAAGAATTATCTTCGAAAAAAAAGAGAAAGAAGTTTGGTACAAGGGGAGGCTGGCTATTTACTGCAATACTTTCAAAGAAAGTCAATAGAAAATCCAACTTTCTACCATGCTTATCAGCTAGATATTGAAGATCAGATCACCAATGTGTTTTGGGCAGATGCTAGGATGTTGATTGATTACAGTTATTTTGGTGATGTTGTTTCTCTTGATTCAACATATTGCACAAATAGTTCACACAGACCACTAGCAATCATCTCGGGATTTAACCACCATCGAGGAGCTGTAATTTTTGGAGCTGCATTATTATATGATGAAACTGCTGAGTCATACGAGTGGCTCTTTGAGACATTTCTAGAAGCACATAAGCAGAAAATGACTCAAACAGTTTTTACTGATCAAGACAAATCAATGGCAAAAGCATTAGCCGAGGTTATGCCCGGAGCTTACCATGGTTTATGTACGTGGCACTTGATGCAAAATGGAATTAAACACTTAGGAAATTTAATGAAGGGGGAATCTTATTTTCTTACTGACTTTAAGAAATGCATGTATGGTTATGAAGATGAAGAACAATTTGAAGATGGTTGGACATCCCTCCTTATAAAGTATGGTGTTCAGAAAAATGATTGGTTGCAAAGAATGTACAGTATAAAGGAGAAATGGGCATCTTGTTACATGAAGAAGACTTTGACATTAGGGATGCGAAGCACTCAACTTAGTGAAAGCGTGAATGCAGATATTAAAAATTTTATGAGTAAGGACTTGGATTTAATTAAATTTTTTGAGCGTTTTGAAGATGTTGTAGAAGAAAAGCGGTATAAAGAATTGAAGTGTGAATTTGAAGCACGCCAAAAAATTCCAAGACTGAAGAACTCGTATTCTGATATTTTGCAACAAGTGTCCAAGCTTTATACTCCTACTATTTTTGACTTATTCCAACATGAGTATAAGTTGTTTGAAGCATGCTTTGTGAAAAGCATGGACATACAAACATCATCATCTACTTATGTTATTGCTAAGAAAAGGAATATGGGAGAATGGCAAGTGACCTTCGATTTGGAAAAGAATACAATTTGTTGCTCTTGTCGTAAATTTGAGATCTTTGGCATACTTTGTTGTCATTGCTTAAAAGTCTTCATTCATATGGACGTTACTTCAGTGCCAGAGCCTTATATTTTAAAGAGGTGGACAAAGATAGCAAGAAGTAGAGCTTCACAAACTATTGGTGTTAGTCATGTTGCAGAAGACTTGGATTTATCTCCAGCACAATGTTATAAGGAAATTTGTCCCCGCTTTATTAGGATCGTCACAGAAGGATGTAGAAGTCCAGAAGCTGTTGAGTTTCTTAAGGAAGTTGCTGATGAATTGGATGAGCAAATGTTGAAGTTTCAAAATATGCAAATTAAGTAG
Protein sequence

>MS.gene008233.t1

MNEDWKPKVDMVFGSFEDAWEFWKTYGGKVGFGVRKDYTHRKKDGSVSSCRFVCCKEGIRKPDKRDHKTKNPRLETRTNCEARLGLKNVDGKLMVHDFVEDHNHELHLPETTHMLSSQRKVSEIQCQQIELADNAGVQQRKSFDLLSKEAGGRTNLGFIRLDQKNYLRKKRERSLKCMYGYEDEEQFEDGWTSLLIKYGVQKNDWLQRMYSIKEKWASCYMKKTLTLGMRSTQLSESVNADIKNFMSKDLDLIKFFERFEDVVEEKRYKELKCEFEARQKIPRLKNSYSDILQQVSKLYTPTIFDLFQHEYKLFEACFVKSMDIQTSSSTYVIAKKRNMGEWQVTFDLEKNTICCSCRKFEIFGILCCHCLKVFIHMDVTSVPEPYILKRWTKIARSRASQTIGVSHVAEDLDLSPAQCYKEICPRFIRIVTEGCRSPEAVEFLKEVADELDEQMLKFQNMQIK