Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008283.t1 | KEH21988.1 | 53.8 | 223 | 53 | 3 | 33 | 252 | 1 | 176 | 1.20E-33 | 153.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008283.t1 | Q0HA25 | 76.9 | 39 | 9 | 0 | 1 | 39 | 54 | 92 | 1.7e-09 | 64.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008283.t1 | A0A072TYR1 | 53.8 | 223 | 53 | 3 | 33 | 252 | 1 | 176 | 8.5e-34 | 153.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene008283.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008283.t1 | MTR_7g028855 | 60.000 | 225 | 40 | 5 | 33 | 254 | 1 | 178 | 1.36e-71 | 226 |
| MS.gene008283.t1 | MTR_7g446480 | 60.963 | 187 | 29 | 3 | 33 | 219 | 1 | 143 | 4.12e-61 | 195 |
| MS.gene008283.t1 | MTR_7g446520 | 58.480 | 171 | 36 | 2 | 88 | 258 | 15 | 150 | 5.22e-57 | 185 |
| MS.gene008283.t1 | MTR_8g467420 | 44.000 | 75 | 42 | 0 | 181 | 255 | 63 | 137 | 2.23e-18 | 80.1 |
| MS.gene008283.t1 | MTR_3g088615 | 100.000 | 32 | 0 | 0 | 1 | 32 | 54 | 85 | 3.32e-16 | 74.7 |
| MS.gene008283.t1 | MTR_1g029670 | 84.375 | 32 | 5 | 0 | 1 | 32 | 54 | 85 | 4.93e-13 | 66.2 |
| MS.gene008283.t1 | MTR_6g072520 | 46.667 | 120 | 44 | 3 | 33 | 151 | 1 | 101 | 1.22e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATGACTTTACGGATTT+TGG | 0.057115 | 3.1:-54758235 | MS.gene008283:CDS |
| GTTAAGGTTGATTGATATTC+TGG | 0.185755 | 3.1:-54759136 | MS.gene008283:intron |
| CATTAACTGCTGAAGGAATA+AGG | 0.236547 | 3.1:-54757772 | MS.gene008283:CDS |
| GAGCCTCTGGGAAAACATTA+TGG | 0.280281 | 3.1:-54759101 | MS.gene008283:CDS |
| AGTGATGATGGTGGTTGTTC+TGG | 0.317361 | 3.1:-54758007 | MS.gene008283:CDS |
| AAACAACAACAATGACTTTA+CGG | 0.325210 | 3.1:-54758242 | MS.gene008283:CDS |
| CTGTTAGGAAGAGTGATATT+AGG | 0.340554 | 3.1:-54757679 | MS.gene008283:CDS |
| GACAGATACCAGAGAGCCTC+TGG | 0.368842 | 3.1:-54759114 | MS.gene008283:CDS |
| GGTACACCGGAACATGATTA+CGG | 0.407134 | 3.1:-54758214 | MS.gene008283:CDS |
| AGCATTTATCAAGGTTAGAT+AGG | 0.409294 | 3.1:-54757588 | None:intergenic |
| TGCTGAAGGAATAAGGGAAA+TGG | 0.412429 | 3.1:-54757765 | MS.gene008283:CDS |
| GCTGATAGATATGATGAAAC+TGG | 0.418978 | 3.1:-54758040 | MS.gene008283:CDS |
| GATTATAGTGCTGGTGATAA+AGG | 0.421954 | 3.1:-54757983 | MS.gene008283:CDS |
| ATTAACTGCTGAAGGAATAA+GGG | 0.439851 | 3.1:-54757771 | MS.gene008283:CDS |
| GAGAGAAGAAGCATTTATCA+AGG | 0.445750 | 3.1:-54757597 | MS.gene008283:CDS |
| GATATTAGGCGCAATGTTAA+CGG | 0.449906 | 3.1:-54757665 | MS.gene008283:CDS |
| TGAGGCAGTATCTATGCAAT+AGG | 0.454261 | 3.1:-54757631 | MS.gene008283:CDS |
| TATAAGTACGGTAAGTGTAA+AGG | 0.460291 | 3.1:-54757707 | MS.gene008283:CDS |
| AGCCTCTGGGAAAACATTAT+GGG | 0.461122 | 3.1:-54759100 | MS.gene008283:CDS |
| AAACATATCCGATGATTGTT+GGG | 0.461967 | 3.1:-54758165 | MS.gene008283:CDS |
| ATAAGTGCTTACGTGGTTGA+AGG | 0.463991 | 3.1:+54759241 | None:intergenic |
| TGTAGTTGTTGGTGAGGAAA+TGG | 0.464499 | 3.1:-54757807 | MS.gene008283:CDS |
| GAAACATATCCGATGATTGT+TGG | 0.469215 | 3.1:-54758166 | MS.gene008283:CDS |
| TGATTACGGTTCTACGGATG+TGG | 0.481654 | 3.1:-54758200 | MS.gene008283:CDS |
| GAAGATGATAATGTAGTTGT+TGG | 0.483174 | 3.1:-54757818 | MS.gene008283:CDS |
| TGTTCTGGTGATTATAGTGC+TGG | 0.489646 | 3.1:-54757992 | MS.gene008283:CDS |
| GCAGTATCTATGCAATAGGC+AGG | 0.492780 | 3.1:-54757627 | MS.gene008283:CDS |
| GTAGAACCGTAATCATGTTC+CGG | 0.492886 | 3.1:+54758208 | None:intergenic |
| TACCATGACCTTCATTATCA+TGG | 0.501933 | 3.1:+54757864 | None:intergenic |
| ATAAATTCATTAACTGCTGA+AGG | 0.519495 | 3.1:-54757779 | MS.gene008283:CDS |
| GGAACATGATTACGGTTCTA+CGG | 0.552732 | 3.1:-54758206 | MS.gene008283:CDS |
| ACACCACTCCCAACAATCAT+CGG | 0.562059 | 3.1:+54758157 | None:intergenic |
| AGTGAAGGCCATGATAATGA+AGG | 0.569097 | 3.1:-54757872 | MS.gene008283:CDS |
| GTAGATGATGATGACAATGA+TGG | 0.572452 | 3.1:-54758106 | MS.gene008283:CDS |
| GGTGATGAAGGTGAAGGTGA+TGG | 0.578030 | 3.1:-54757926 | MS.gene008283:CDS |
| GATGAAAGTCAAGGTGATGA+AGG | 0.579998 | 3.1:-54757938 | MS.gene008283:CDS |
| AGTATCTATGCAATAGGCAG+GGG | 0.585986 | 3.1:-54757625 | MS.gene008283:CDS |
| GGTGATAAAGGTGAAGATGA+TGG | 0.589452 | 3.1:-54757971 | MS.gene008283:CDS |
| CAGTATCTATGCAATAGGCA+GGG | 0.594663 | 3.1:-54757626 | MS.gene008283:CDS |
| GGCCATGATAATGAAGGTCA+TGG | 0.596256 | 3.1:-54757866 | MS.gene008283:CDS |
| TAAGTGCTTACGTGGTTGAA+GGG | 0.600831 | 3.1:+54759242 | None:intergenic |
| GGTGAAGGTGATGGAGGTGA+AGG | 0.600974 | 3.1:-54757917 | MS.gene008283:CDS |
| GGAGACAATGAAAGTGATGA+TGG | 0.609236 | 3.1:-54758019 | MS.gene008283:CDS |
| ACAGATACCAGAGAGCCTCT+GGG | 0.613351 | 3.1:-54759113 | MS.gene008283:CDS |
| GATGAAGGTGAAGGTGATGG+AGG | 0.613749 | 3.1:-54757923 | MS.gene008283:CDS |
| AATGAAGGTCATGGTAGTGA+AGG | 0.627821 | 3.1:-54757857 | MS.gene008283:CDS |
| TAGATGATGATGACAATGAT+GGG | 0.643158 | 3.1:-54758105 | MS.gene008283:CDS |
| GATGACAATGATGGGAGTCA+TGG | 0.643643 | 3.1:-54758097 | MS.gene008283:CDS |
| TATCCGATGATTGTTGGGAG+TGG | 0.653545 | 3.1:-54758160 | MS.gene008283:CDS |
| TGATAATGTAGTTGTTGGTG+AGG | 0.656667 | 3.1:-54757813 | MS.gene008283:CDS |
| ATTATGGGATGCTAAGCATG+AGG | 0.675018 | 3.1:-54759085 | MS.gene008283:intron |
| TTAACGGTGAGATTGTAATG+AGG | 0.680367 | 3.1:-54757649 | MS.gene008283:CDS |
| AGTCAAGGTGATGAAGGTGA+AGG | 0.696692 | 3.1:-54757932 | MS.gene008283:CDS |
| GACAATGAAAGTGATGATGG+TGG | 0.706532 | 3.1:-54758016 | MS.gene008283:CDS |
| GTATCTATGCAATAGGCAGG+GGG | 0.707463 | 3.1:-54757624 | MS.gene008283:CDS |
| AGTGAATGTGATGAAAGTCA+AGG | 0.717258 | 3.1:-54757947 | MS.gene008283:CDS |
| AGTGAAGATGATGAAAGTGA+AGG | 0.718504 | 3.1:-54757887 | MS.gene008283:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTTTTGTTTTGTTA+AGG | - | chr3.1:54757696-54757715 | MS.gene008283:CDS | 10.0% |
| !!! | TACAATTTTTATTATAAGTA+CGG | - | chr3.1:54759129-54759148 | MS.gene008283:CDS | 10.0% |
| !!! | AATTGATTTTTAAAAACAGA+AGG | + | chr3.1:54758032-54758051 | None:intergenic | 15.0% |
| !!! | TGCAATTAAAATTAGTTTAA+GGG | + | chr3.1:54758002-54758021 | None:intergenic | 15.0% |
| !!! | TTTAAATTTTGTATTCTAGA+TGG | - | chr3.1:54758582-54758601 | MS.gene008283:intron | 15.0% |
| !!! | TTTTTGTTTTTCTTTTGTTA+GGG | - | chr3.1:54757652-54757671 | MS.gene008283:CDS | 15.0% |
| !!! | TTTTTTGTTTTTCTTTTGTT+AGG | - | chr3.1:54757651-54757670 | MS.gene008283:CDS | 15.0% |
| !! | AACAAAAAAGTTTCAAAGAA+AGG | + | chr3.1:54757640-54757659 | None:intergenic | 20.0% |
| !! | GAAATCAAATACGAAAATTA+GGG | - | chr3.1:54758352-54758371 | MS.gene008283:intron | 20.0% |
| !! | TATTACATGCAGAAAAAAAT+AGG | + | chr3.1:54758308-54758327 | None:intergenic | 20.0% |
| !! | TTATGGTTTATATCTTCATT+TGG | - | chr3.1:54758525-54758544 | MS.gene008283:intron | 20.0% |
| !!! | GTGCAATTAAAATTAGTTTA+AGG | + | chr3.1:54758003-54758022 | None:intergenic | 20.0% |
| !!! | TTTTCTGCATGTAATATTAT+CGG | - | chr3.1:54758312-54758331 | MS.gene008283:intron | 20.0% |
| ! | AAACAACAACAATGACTTTA+CGG | - | chr3.1:54758606-54758625 | MS.gene008283:intron | 25.0% |
| ! | AAATACGAAAATTAGGGATT+AGG | - | chr3.1:54758358-54758377 | MS.gene008283:intron | 25.0% |
| ! | AATACGAAAATTAGGGATTA+GGG | - | chr3.1:54758359-54758378 | MS.gene008283:intron | 25.0% |
| ! | ATAAATTCATTAACTGCTGA+AGG | - | chr3.1:54759069-54759088 | MS.gene008283:intron | 25.0% |
| ! | CGAAATCAAATACGAAAATT+AGG | - | chr3.1:54758351-54758370 | MS.gene008283:intron | 25.0% |
| ! | TTAGTCATGTTATATGGTAA+TGG | - | chr3.1:54757924-54757943 | MS.gene008283:CDS | 25.0% |
| ! | TTTCTGCATGTAATATTATC+GGG | - | chr3.1:54758313-54758332 | MS.gene008283:intron | 25.0% |
| !! | TGTTTAGTGTTCATTGATTA+TGG | - | chr3.1:54758508-54758527 | MS.gene008283:intron | 25.0% |
| !!! | AGTTTTTGATTTGCTGATTA+GGG | - | chr3.1:54758410-54758429 | MS.gene008283:intron | 25.0% |
| !!! | TAGTTTTTGATTTGCTGATT+AGG | - | chr3.1:54758409-54758428 | MS.gene008283:intron | 25.0% |
| !!! | TTAGGATTGAGTAGTTTTAT+TGG | - | chr3.1:54758484-54758503 | MS.gene008283:intron | 25.0% |
| AAACATATCCGATGATTGTT+GGG | - | chr3.1:54758683-54758702 | MS.gene008283:intron | 30.0% | |
| AACATATATAAGTGCTTACG+TGG | + | chr3.1:54757617-54757636 | None:intergenic | 30.0% | |
| AGGAGAAAGAAAAAGATGAA+GGG | + | chr3.1:54758133-54758152 | None:intergenic | 30.0% | |
| ATTAACTGCTGAAGGAATAA+GGG | - | chr3.1:54759077-54759096 | MS.gene008283:intron | 30.0% | |
| GAAAATTCTATTGTGAAGTC+AGG | - | chr3.1:54757846-54757865 | MS.gene008283:CDS | 30.0% | |
| TATAACATGACTAAAACACG+TGG | + | chr3.1:54757918-54757937 | None:intergenic | 30.0% | |
| TATAAGTACGGTAAGTGTAA+AGG | - | chr3.1:54759141-54759160 | MS.gene008283:intron | 30.0% | |
| TTACAATTAACTTTGCCTGA+AGG | + | chr3.1:54757974-54757993 | None:intergenic | 30.0% | |
| TTCAGTAGTGAATAGAACTT+AGG | - | chr3.1:54758466-54758485 | MS.gene008283:intron | 30.0% | |
| ! | AACAATGACTTTACGGATTT+TGG | - | chr3.1:54758613-54758632 | MS.gene008283:intron | 30.0% |
| ! | AATTTTACGAGGAATACTCA+AGG | - | chr3.1:54758775-54758794 | MS.gene008283:intron | 30.0% |
| ! | ATTTTACGAGGAATACTCAA+GGG | - | chr3.1:54758776-54758795 | MS.gene008283:intron | 30.0% |
| ! | GAAGATGATAATGTAGTTGT+TGG | - | chr3.1:54759030-54759049 | MS.gene008283:intron | 30.0% |
| ! | GATTAGGGTTTATCTCATTT+TGG | - | chr3.1:54758558-54758577 | MS.gene008283:intron | 30.0% |
| ! | GTTAAGGTTGATTGATATTC+TGG | - | chr3.1:54757712-54757731 | MS.gene008283:CDS | 30.0% |
| ! | TAGATGATGATGACAATGAT+GGG | - | chr3.1:54758743-54758762 | MS.gene008283:intron | 30.0% |
| !! | ATTTGGTTTGATCAGTGATT+AGG | - | chr3.1:54758542-54758561 | MS.gene008283:intron | 30.0% |
| !! | TAATATTATCGGGATTGGTT+AGG | - | chr3.1:54758323-54758342 | MS.gene008283:intron | 30.0% |
| !! | TTTGGTTTGATCAGTGATTA+GGG | - | chr3.1:54758543-54758562 | MS.gene008283:intron | 30.0% |
| !!! | CGTGTTTTAGTCATGTTATA+TGG | - | chr3.1:54757918-54757937 | MS.gene008283:CDS | 30.0% |
| AGGTTGAAATACGAATCCAA+GGG | + | chr3.1:54758255-54758274 | None:intergenic | 35.0% | |
| AGTGAAGATGATGAAAGTGA+AGG | - | chr3.1:54758961-54758980 | MS.gene008283:intron | 35.0% | |
| AGTGAATGTGATGAAAGTCA+AGG | - | chr3.1:54758901-54758920 | MS.gene008283:intron | 35.0% | |
| CATTAACTGCTGAAGGAATA+AGG | - | chr3.1:54759076-54759095 | MS.gene008283:intron | 35.0% | |
| CTGTTAGGAAGAGTGATATT+AGG | - | chr3.1:54759169-54759188 | MS.gene008283:intron | 35.0% | |
| GAAACATATCCGATGATTGT+TGG | - | chr3.1:54758682-54758701 | MS.gene008283:intron | 35.0% | |
| GAAAGAAAAAGATGAAGGGT+AGG | + | chr3.1:54758129-54758148 | None:intergenic | 35.0% | |
| GAGGAGAAAGAAAAAGATGA+AGG | + | chr3.1:54758134-54758153 | None:intergenic | 35.0% | |
| GATATTAGGCGCAATGTTAA+CGG | - | chr3.1:54759183-54759202 | MS.gene008283:intron | 35.0% | |
| GCATGTAATATTATCGGGAT+TGG | - | chr3.1:54758318-54758337 | MS.gene008283:intron | 35.0% | |
| GCTGATAGATATGATGAAAC+TGG | - | chr3.1:54758808-54758827 | MS.gene008283:intron | 35.0% | |
| TACCATGACCTTCATTATCA+TGG | + | chr3.1:54758987-54759006 | None:intergenic | 35.0% | |
| TAGTGATTAAGTAGATTCGC+TGG | - | chr3.1:54758443-54758462 | MS.gene008283:intron | 35.0% | |
| TTAACGGTGAGATTGTAATG+AGG | - | chr3.1:54759199-54759218 | MS.gene008283:intron | 35.0% | |
| ! | GTAGATGATGATGACAATGA+TGG | - | chr3.1:54758742-54758761 | MS.gene008283:intron | 35.0% |
| ! | TGATAATGTAGTTGTTGGTG+AGG | - | chr3.1:54759035-54759054 | MS.gene008283:intron | 35.0% |
| !! | GAGAGAAGAAGCATTTATCA+AGG | - | chr3.1:54759251-54759270 | MS.gene008283:intron | 35.0% |
| !! | GATTATAGTGCTGGTGATAA+AGG | - | chr3.1:54758865-54758884 | MS.gene008283:intron | 35.0% |
| !! | GTCATGTTATATGGTAATGG+CGG | - | chr3.1:54757927-54757946 | MS.gene008283:CDS | 35.0% |
| !! | TGATTTGCTGATTAGGGTTA+GGG | - | chr3.1:54758416-54758435 | MS.gene008283:intron | 35.0% |
| !! | TTGATTTGCTGATTAGGGTT+AGG | - | chr3.1:54758415-54758434 | MS.gene008283:intron | 35.0% |
| !!! | AGATTCGCTGCTTTTGATTA+CGG | - | chr3.1:54758383-54758402 | MS.gene008283:intron | 35.0% |
| !!! | AGTGTAAAGGTTTTGCTGTT+AGG | - | chr3.1:54759154-54759173 | MS.gene008283:intron | 35.0% |
| AGGCAAAATCCTACTATGGT+GGG | + | chr3.1:54758158-54758177 | None:intergenic | 40.0% | |
| AGTATCTATGCAATAGGCAG+GGG | - | chr3.1:54759223-54759242 | MS.gene008283:intron | 40.0% | |
| AGTCAGGCAAATGACTTCTT+CGG | - | chr3.1:54757862-54757881 | MS.gene008283:CDS | 40.0% | |
| ATAAGTGCTTACGTGGTTGA+AGG | + | chr3.1:54757610-54757629 | None:intergenic | 40.0% | |
| ATTATGGGATGCTAAGCATG+AGG | - | chr3.1:54757763-54757782 | MS.gene008283:CDS | 40.0% | |
| CAGTATCTATGCAATAGGCA+GGG | - | chr3.1:54759222-54759241 | MS.gene008283:intron | 40.0% | |
| CTTACCTAACTTCACAGTTG+AGG | + | chr3.1:54758275-54758294 | None:intergenic | 40.0% | |
| GAGGTTGAAATACGAATCCA+AGG | + | chr3.1:54758256-54758275 | None:intergenic | 40.0% | |
| GATGAAAGTCAAGGTGATGA+AGG | - | chr3.1:54758910-54758929 | MS.gene008283:intron | 40.0% | |
| GGAACATGATTACGGTTCTA+CGG | - | chr3.1:54758642-54758661 | MS.gene008283:intron | 40.0% | |
| GGAGACAATGAAAGTGATGA+TGG | - | chr3.1:54758829-54758848 | MS.gene008283:intron | 40.0% | |
| GGTGATAAAGGTGAAGATGA+TGG | - | chr3.1:54758877-54758896 | MS.gene008283:intron | 40.0% | |
| GTAGAACCGTAATCATGTTC+CGG | + | chr3.1:54758643-54758662 | None:intergenic | 40.0% | |
| TAAGTGCTTACGTGGTTGAA+GGG | + | chr3.1:54757609-54757628 | None:intergenic | 40.0% | |
| TCAACCTCAACTGTGAAGTT+AGG | - | chr3.1:54758268-54758287 | MS.gene008283:intron | 40.0% | |
| TGAGGCAGTATCTATGCAAT+AGG | - | chr3.1:54759217-54759236 | MS.gene008283:intron | 40.0% | |
| TGCTGAAGGAATAAGGGAAA+TGG | - | chr3.1:54759083-54759102 | MS.gene008283:intron | 40.0% | |
| TGTTCTGGTGATTATAGTGC+TGG | - | chr3.1:54758856-54758875 | MS.gene008283:intron | 40.0% | |
| TTGGAGGCAAAATCCTACTA+TGG | + | chr3.1:54758162-54758181 | None:intergenic | 40.0% | |
| ! | AAGGGTAGGTTTCTAAGAAC+AGG | + | chr3.1:54758115-54758134 | None:intergenic | 40.0% |
| ! | AATGAAGGTCATGGTAGTGA+AGG | - | chr3.1:54758991-54759010 | MS.gene008283:intron | 40.0% |
| ! | AGCCTCTGGGAAAACATTAT+GGG | - | chr3.1:54757748-54757767 | MS.gene008283:CDS | 40.0% |
| ! | AGGGTAGGTTTCTAAGAACA+GGG | + | chr3.1:54758114-54758133 | None:intergenic | 40.0% |
| ! | AGTGAAGGCCATGATAATGA+AGG | - | chr3.1:54758976-54758995 | MS.gene008283:intron | 40.0% |
| ! | ATCCCATAATGTTTTCCCAG+AGG | + | chr3.1:54757753-54757772 | None:intergenic | 40.0% |
| ! | GGAGTCATGGTAATTTTACG+AGG | - | chr3.1:54758764-54758783 | MS.gene008283:intron | 40.0% |
| ! | TGTAGTTGTTGGTGAGGAAA+TGG | - | chr3.1:54759041-54759060 | MS.gene008283:intron | 40.0% |
| ! | TTTCTAAGAACAGGGGAAGA+AGG | + | chr3.1:54758106-54758125 | None:intergenic | 40.0% |
| !! | CTTTACGGATTTTGGTACAC+CGG | - | chr3.1:54758621-54758640 | MS.gene008283:intron | 40.0% |
| !! | GACAATGAAAGTGATGATGG+TGG | - | chr3.1:54758832-54758851 | MS.gene008283:intron | 40.0% |
| ACACCACTCCCAACAATCAT+CGG | + | chr3.1:54758694-54758713 | None:intergenic | 45.0% | |
| AGTCAAGGTGATGAAGGTGA+AGG | - | chr3.1:54758916-54758935 | MS.gene008283:intron | 45.0% | |
| GAGGCAAAATCCTACTATGG+TGG | + | chr3.1:54758159-54758178 | None:intergenic | 45.0% | |
| GCAGTATCTATGCAATAGGC+AGG | - | chr3.1:54759221-54759240 | MS.gene008283:intron | 45.0% | |
| GGTACACCGGAACATGATTA+CGG | - | chr3.1:54758634-54758653 | MS.gene008283:intron | 45.0% | |
| GGTATGTACTGTGTTCCTTC+AGG | - | chr3.1:54757956-54757975 | MS.gene008283:CDS | 45.0% | |
| GTATCTATGCAATAGGCAGG+GGG | - | chr3.1:54759224-54759243 | MS.gene008283:intron | 45.0% | |
| TATCCGATGATTGTTGGGAG+TGG | - | chr3.1:54758688-54758707 | MS.gene008283:intron | 45.0% | |
| TGATTACGGTTCTACGGATG+TGG | - | chr3.1:54758648-54758667 | MS.gene008283:intron | 45.0% | |
| ! | AAATCCTACTATGGTGGGAG+AGG | + | chr3.1:54758153-54758172 | None:intergenic | 45.0% |
| ! | GAGCCTCTGGGAAAACATTA+TGG | - | chr3.1:54757747-54757766 | MS.gene008283:CDS | 45.0% |
| ! | GATGACAATGATGGGAGTCA+TGG | - | chr3.1:54758751-54758770 | MS.gene008283:intron | 45.0% |
| ! | GGCCATGATAATGAAGGTCA+TGG | - | chr3.1:54758982-54759001 | MS.gene008283:intron | 45.0% |
| ! | GGGTAGGTTTCTAAGAACAG+GGG | + | chr3.1:54758113-54758132 | None:intergenic | 45.0% |
| !! | AGTGATGATGGTGGTTGTTC+TGG | - | chr3.1:54758841-54758860 | MS.gene008283:intron | 45.0% |
| !! | ATATGGTAATGGCGGATGCA+TGG | - | chr3.1:54757935-54757954 | MS.gene008283:CDS | 45.0% |
| !! | TATATTTATAGTTAAATATT+TGG | - | chr3.1:54757824-54757843 | MS.gene008283:CDS | 5.0% |
| AAGGGCAACGATCGGGAAAA+GGG | + | chr3.1:54758191-54758210 | None:intergenic | 50.0% | |
| AAGGGCAACGATCGGGAAAT+AGG | + | chr3.1:54758237-54758256 | None:intergenic | 50.0% | |
| ACAGATACCAGAGAGCCTCT+GGG | - | chr3.1:54757735-54757754 | MS.gene008283:CDS | 50.0% | |
| ACGAATCCAAGGGCAACGAT+CGG | + | chr3.1:54758245-54758264 | None:intergenic | 50.0% | |
| AGGGCAACGATCGGGAAATA+GGG | + | chr3.1:54758236-54758255 | None:intergenic | 50.0% | |
| ATCGGGAAAAGGGTGGAGAT+TGG | + | chr3.1:54758181-54758200 | None:intergenic | 50.0% | |
| GGAAATAGGGTGGAGATTGG+AGG | + | chr3.1:54758223-54758242 | None:intergenic | 50.0% | |
| GGCGCGTTCGTATTAGTTGT+AGG | + | chr3.1:54757897-54757916 | None:intergenic | 50.0% | |
| GGTGATGAAGGTGAAGGTGA+TGG | - | chr3.1:54758922-54758941 | MS.gene008283:intron | 50.0% | |
| TATTTCCCGATCGTTGCCCT+TGG | - | chr3.1:54758236-54758255 | MS.gene008283:CDS | 50.0% | |
| TCGGGAAATAGGGTGGAGAT+TGG | + | chr3.1:54758226-54758245 | None:intergenic | 50.0% | |
| TGGGATGCTAAGCATGAGGT+AGG | - | chr3.1:54757767-54757786 | MS.gene008283:CDS | 50.0% | |
| TTCTCCTCTCCCACCATAGT+AGG | - | chr3.1:54758146-54758165 | MS.gene008283:CDS | 50.0% | |
| ! | ATGTTTTCCCAGAGGCTCTC+TGG | + | chr3.1:54757745-54757764 | None:intergenic | 50.0% |
| ! | GATGAAGGTGAAGGTGATGG+AGG | - | chr3.1:54758925-54758944 | MS.gene008283:intron | 50.0% |
| CGAATCCAAGGGCAACGATC+GGG | + | chr3.1:54758244-54758263 | None:intergenic | 55.0% | |
| GAAGGGCAACGATCGGGAAA+AGG | + | chr3.1:54758192-54758211 | None:intergenic | 55.0% | |
| GACAGATACCAGAGAGCCTC+TGG | - | chr3.1:54757734-54757753 | MS.gene008283:CDS | 55.0% | |
| GCAACGATCGGGAAATAGGG+TGG | + | chr3.1:54758233-54758252 | None:intergenic | 55.0% | |
| GGGAAAAGGGTGGAGATTGG+AGG | + | chr3.1:54758178-54758197 | None:intergenic | 55.0% | |
| !! | GGTGAAGGTGATGGAGGTGA+AGG | - | chr3.1:54758931-54758950 | MS.gene008283:intron | 55.0% |
| ACGACGGAAGGGCAACGATC+GGG | + | chr3.1:54758198-54758217 | None:intergenic | 60.0% | |
| AGATTGGAGGCGACGACGGA+AGG | + | chr3.1:54758210-54758229 | None:intergenic | 60.0% | |
| GACGACGGAAGGGCAACGAT+CGG | + | chr3.1:54758199-54758218 | None:intergenic | 60.0% | |
| GATTGGAGGCGACGACGGAA+GGG | + | chr3.1:54758209-54758228 | None:intergenic | 60.0% | |
| GGCAACGATCGGGAAAAGGG+TGG | + | chr3.1:54758188-54758207 | None:intergenic | 60.0% | |
| GTGGAGATTGGAGGCGACGA+CGG | + | chr3.1:54758214-54758233 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 54757589 | 54759281 | 54757589 | ID=MS.gene008283 |
| chr3.1 | mRNA | 54757589 | 54759281 | 54757589 | ID=MS.gene008283.t1;Parent=MS.gene008283 |
| chr3.1 | exon | 54759253 | 54759281 | 54759253 | ID=MS.gene008283.t1.exon1;Parent=MS.gene008283.t1 |
| chr3.1 | CDS | 54759253 | 54759281 | 54759253 | ID=cds.MS.gene008283.t1;Parent=MS.gene008283.t1 |
| chr3.1 | exon | 54759086 | 54759152 | 54759086 | ID=MS.gene008283.t1.exon2;Parent=MS.gene008283.t1 |
| chr3.1 | CDS | 54759086 | 54759152 | 54759086 | ID=cds.MS.gene008283.t1;Parent=MS.gene008283.t1 |
| chr3.1 | exon | 54757589 | 54758269 | 54757589 | ID=MS.gene008283.t1.exon3;Parent=MS.gene008283.t1 |
| chr3.1 | CDS | 54757589 | 54758269 | 54757589 | ID=cds.MS.gene008283.t1;Parent=MS.gene008283.t1 |
| Gene Sequence |
| Protein sequence |
