Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008305.t1 | XP_024635654.1 | 92.6 | 242 | 15 | 1 | 1 | 239 | 1 | 242 | 5.50E-118 | 433.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008305.t1 | Q9FJK3 | 56.2 | 219 | 83 | 3 | 1 | 206 | 1 | 219 | 1.1e-55 | 218.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008305.t1 | G7J8R0 | 92.6 | 242 | 15 | 1 | 1 | 239 | 1 | 242 | 3.9e-118 | 433.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene008305.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008305.t1 | MTR_3g065100 | 92.562 | 242 | 15 | 1 | 1 | 239 | 1 | 242 | 5.27e-157 | 435 |
| MS.gene008305.t1 | MTR_3g466980 | 54.357 | 241 | 83 | 4 | 1 | 234 | 1 | 221 | 3.46e-83 | 248 |
| MS.gene008305.t1 | MTR_8g036130 | 56.735 | 245 | 95 | 6 | 1 | 235 | 1 | 244 | 1.58e-79 | 239 |
| MS.gene008305.t1 | MTR_4g032620 | 50.424 | 236 | 108 | 4 | 1 | 235 | 1 | 228 | 1.20e-75 | 229 |
| MS.gene008305.t1 | MTR_4g031910 | 49.383 | 243 | 98 | 6 | 1 | 235 | 1 | 226 | 5.92e-64 | 199 |
| MS.gene008305.t1 | MTR_4g032290 | 51.440 | 243 | 95 | 8 | 1 | 235 | 1 | 228 | 4.47e-58 | 184 |
| MS.gene008305.t1 | MTR_3g466830 | 51.899 | 158 | 76 | 0 | 3 | 160 | 2 | 159 | 1.15e-54 | 173 |
| MS.gene008305.t1 | MTR_4g032260 | 61.290 | 155 | 59 | 1 | 1 | 154 | 1 | 155 | 9.56e-54 | 171 |
| MS.gene008305.t1 | MTR_4g063790 | 52.532 | 158 | 74 | 1 | 1 | 157 | 1 | 158 | 1.01e-52 | 168 |
| MS.gene008305.t1 | MTR_2g035610 | 68.033 | 122 | 39 | 0 | 1 | 122 | 1 | 122 | 1.29e-51 | 164 |
| MS.gene008305.t1 | MTR_3g466890 | 49.682 | 157 | 79 | 0 | 3 | 159 | 2 | 158 | 7.90e-49 | 158 |
| MS.gene008305.t1 | MTR_3g467080 | 49.032 | 155 | 78 | 1 | 1 | 154 | 1 | 155 | 1.14e-48 | 157 |
| MS.gene008305.t1 | MTR_5g047580 | 50.000 | 156 | 77 | 1 | 1 | 156 | 1 | 155 | 9.66e-47 | 152 |
| MS.gene008305.t1 | MTR_5g075380 | 42.593 | 162 | 93 | 0 | 1 | 162 | 1 | 162 | 7.10e-46 | 150 |
| MS.gene008305.t1 | MTR_3g031100 | 40.782 | 179 | 101 | 2 | 1 | 178 | 1 | 175 | 4.88e-43 | 146 |
| MS.gene008305.t1 | MTR_2g016210 | 41.294 | 201 | 106 | 3 | 1 | 197 | 1 | 193 | 1.38e-42 | 145 |
| MS.gene008305.t1 | MTR_1g077390 | 46.497 | 157 | 83 | 1 | 1 | 157 | 1 | 156 | 4.60e-42 | 140 |
| MS.gene008305.t1 | MTR_1g090697 | 42.949 | 156 | 88 | 1 | 1 | 156 | 1 | 155 | 5.49e-41 | 138 |
| MS.gene008305.t1 | MTR_7g011950 | 50.318 | 157 | 77 | 1 | 1 | 157 | 1 | 156 | 6.20e-41 | 138 |
| MS.gene008305.t1 | MTR_1g084950 | 50.000 | 156 | 77 | 1 | 1 | 156 | 1 | 155 | 4.42e-40 | 135 |
| MS.gene008305.t1 | MTR_1g077320 | 50.318 | 157 | 77 | 1 | 1 | 157 | 1 | 156 | 6.62e-40 | 135 |
| MS.gene008305.t1 | MTR_3g031240 | 40.123 | 162 | 96 | 1 | 1 | 161 | 1 | 162 | 2.97e-39 | 134 |
| MS.gene008305.t1 | MTR_4g028720 | 48.408 | 157 | 80 | 1 | 1 | 157 | 1 | 156 | 4.71e-38 | 130 |
| MS.gene008305.t1 | MTR_1g090710 | 40.127 | 157 | 92 | 2 | 1 | 156 | 1 | 156 | 6.25e-37 | 127 |
| MS.gene008305.t1 | MTR_1g090783 | 42.384 | 151 | 86 | 1 | 3 | 153 | 2 | 151 | 6.27e-37 | 127 |
| MS.gene008305.t1 | MTR_3g466900 | 45.312 | 128 | 70 | 0 | 32 | 159 | 2 | 129 | 2.89e-36 | 125 |
| MS.gene008305.t1 | MTR_3g465410 | 46.923 | 130 | 68 | 1 | 29 | 157 | 1 | 130 | 3.36e-36 | 125 |
| MS.gene008305.t1 | MTR_2g035580 | 43.506 | 154 | 87 | 0 | 1 | 154 | 1 | 154 | 6.68e-36 | 125 |
| MS.gene008305.t1 | MTR_1g077300 | 48.408 | 157 | 78 | 2 | 1 | 157 | 1 | 154 | 1.00e-34 | 122 |
| MS.gene008305.t1 | MTR_3g466930 | 45.312 | 128 | 70 | 0 | 32 | 159 | 2 | 129 | 1.67e-34 | 120 |
| MS.gene008305.t1 | MTR_5g047560 | 41.026 | 156 | 75 | 2 | 1 | 156 | 1 | 139 | 9.28e-31 | 111 |
| MS.gene008305.t1 | MTR_4g028800 | 69.444 | 72 | 20 | 1 | 1 | 72 | 1 | 70 | 3.42e-28 | 102 |
| MS.gene008305.t1 | MTR_7g055800 | 47.899 | 119 | 34 | 2 | 1 | 119 | 1 | 91 | 3.64e-28 | 103 |
| MS.gene008305.t1 | MTR_7g055790 | 51.351 | 111 | 36 | 1 | 1 | 111 | 59 | 151 | 1.62e-25 | 98.2 |
| MS.gene008305.t1 | MTR_4g084780 | 94.000 | 50 | 3 | 0 | 74 | 123 | 1 | 50 | 2.30e-25 | 97.8 |
| MS.gene008305.t1 | MTR_6g018920 | 29.630 | 243 | 133 | 9 | 1 | 233 | 1 | 215 | 1.42e-24 | 100 |
| MS.gene008305.t1 | MTR_4g019670 | 38.462 | 117 | 72 | 0 | 3 | 119 | 6 | 122 | 7.23e-24 | 99.8 |
| MS.gene008305.t1 | MTR_7g106510 | 38.525 | 122 | 72 | 1 | 1 | 119 | 1 | 122 | 2.56e-23 | 98.2 |
| MS.gene008305.t1 | MTR_7g055940 | 45.283 | 106 | 30 | 2 | 1 | 106 | 1 | 78 | 8.65e-22 | 86.3 |
| MS.gene008305.t1 | MTR_1g114730 | 27.049 | 244 | 140 | 8 | 1 | 234 | 1 | 216 | 5.69e-21 | 90.1 |
| MS.gene008305.t1 | MTR_3g093900 | 27.564 | 156 | 113 | 0 | 3 | 158 | 6 | 161 | 3.37e-20 | 89.4 |
| MS.gene008305.t1 | MTR_6g005450 | 27.572 | 243 | 140 | 8 | 1 | 234 | 1 | 216 | 3.64e-20 | 88.2 |
| MS.gene008305.t1 | MTR_2g035590 | 50.562 | 89 | 43 | 1 | 74 | 161 | 1 | 89 | 2.19e-19 | 80.5 |
| MS.gene008305.t1 | MTR_6g005440 | 26.087 | 184 | 120 | 5 | 1 | 178 | 1 | 174 | 5.31e-16 | 76.3 |
| MS.gene008305.t1 | MTR_2g049610 | 24.686 | 239 | 165 | 7 | 1 | 237 | 1 | 226 | 4.79e-13 | 67.0 |
| MS.gene008305.t1 | MTR_4g045977 | 24.623 | 199 | 132 | 5 | 1 | 189 | 1 | 191 | 1.45e-12 | 66.6 |
| MS.gene008305.t1 | MTR_4g107170 | 26.627 | 169 | 113 | 4 | 1 | 166 | 1 | 161 | 6.36e-12 | 63.9 |
| MS.gene008305.t1 | MTR_5g041650 | 33.333 | 96 | 64 | 0 | 1 | 96 | 38 | 133 | 9.68e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008305.t1 | AT5G48670 | 56.164 | 219 | 83 | 3 | 1 | 206 | 1 | 219 | 1.29e-70 | 219 |
| MS.gene008305.t1 | AT1G65300 | 43.678 | 174 | 98 | 0 | 3 | 176 | 2 | 175 | 6.57e-51 | 167 |
| MS.gene008305.t1 | AT1G65330 | 47.778 | 180 | 92 | 1 | 3 | 180 | 2 | 181 | 8.66e-51 | 167 |
| MS.gene008305.t1 | AT5G26630 | 47.120 | 191 | 99 | 1 | 1 | 191 | 1 | 189 | 2.65e-48 | 159 |
| MS.gene008305.t1 | AT3G05860 | 51.007 | 149 | 73 | 0 | 1 | 149 | 1 | 149 | 3.41e-48 | 158 |
| MS.gene008305.t1 | AT3G05860 | 44.505 | 182 | 96 | 2 | 1 | 177 | 1 | 182 | 4.32e-48 | 159 |
| MS.gene008305.t1 | AT3G05860 | 41.709 | 199 | 111 | 2 | 1 | 194 | 1 | 199 | 9.22e-48 | 159 |
| MS.gene008305.t1 | AT5G26650 | 44.654 | 159 | 88 | 0 | 4 | 162 | 2 | 160 | 1.18e-43 | 151 |
| MS.gene008305.t1 | AT5G27960 | 44.025 | 159 | 89 | 0 | 4 | 162 | 2 | 160 | 1.21e-42 | 147 |
| MS.gene008305.t1 | AT1G31630 | 42.405 | 158 | 90 | 1 | 3 | 160 | 2 | 158 | 1.07e-41 | 145 |
| MS.gene008305.t1 | AT5G27810 | 66.667 | 93 | 31 | 0 | 29 | 121 | 1 | 93 | 5.05e-40 | 134 |
| MS.gene008305.t1 | AT1G31640 | 41.875 | 160 | 92 | 1 | 3 | 162 | 2 | 160 | 6.56e-39 | 140 |
| MS.gene008305.t1 | AT2G28700 | 35.714 | 182 | 108 | 4 | 1 | 176 | 1 | 179 | 6.60e-34 | 124 |
| MS.gene008305.t1 | AT5G26580 | 39.375 | 160 | 83 | 1 | 1 | 160 | 1 | 146 | 4.57e-32 | 120 |
| MS.gene008305.t1 | AT1G22590 | 35.714 | 154 | 96 | 1 | 1 | 154 | 1 | 151 | 1.71e-26 | 100 |
| MS.gene008305.t1 | AT2G40210 | 43.902 | 123 | 69 | 0 | 1 | 123 | 1 | 123 | 4.03e-24 | 99.4 |
| MS.gene008305.t1 | AT5G06500 | 37.815 | 119 | 74 | 0 | 1 | 119 | 1 | 119 | 9.80e-22 | 90.5 |
| MS.gene008305.t1 | AT5G55690 | 28.365 | 208 | 113 | 4 | 1 | 187 | 1 | 193 | 1.75e-17 | 79.7 |
| MS.gene008305.t1 | AT5G55690 | 28.365 | 208 | 113 | 4 | 1 | 187 | 1 | 193 | 1.75e-17 | 79.7 |
| MS.gene008305.t1 | AT5G58890 | 30.625 | 160 | 96 | 3 | 1 | 154 | 1 | 151 | 1.32e-13 | 69.3 |
| MS.gene008305.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 3.12e-11 | 62.0 |
| MS.gene008305.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 3.12e-11 | 62.0 |
| MS.gene008305.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 3.12e-11 | 62.0 |
| MS.gene008305.t1 | AT1G77950 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 3.12e-11 | 62.0 |
| MS.gene008305.t1 | AT5G35120 | 32.967 | 91 | 61 | 0 | 84 | 174 | 1 | 91 | 6.73e-11 | 58.2 |
Find 57 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCCATTCTCTTCAATCTT+AGG | 0.228194 | 3.1:+54546464 | None:intergenic |
| TCTATTATCCTTTCTTTGTT+TGG | 0.241148 | 3.1:+54546697 | None:intergenic |
| GATTTGGCCAAAACCCATTT+GGG | 0.290435 | 3.1:+54546318 | None:intergenic |
| ATGCTTATATTGTGCATAAC+TGG | 0.326699 | 3.1:+54546629 | None:intergenic |
| GAAGAAAGGTCTAATGAAAA+AGG | 0.328619 | 3.1:-54546930 | MS.gene008305:CDS |
| CATGGTTGATTTGAATGATA+TGG | 0.333296 | 3.1:-54546609 | MS.gene008305:CDS |
| GAGTCATGGTCAACATGTTT+TGG | 0.338044 | 3.1:-54546438 | MS.gene008305:CDS |
| CACCACCATGACTAGGAAAA+AGG | 0.339147 | 3.1:-54547008 | None:intergenic |
| GGATTTGGCCAAAACCCATT+TGG | 0.342692 | 3.1:+54546317 | None:intergenic |
| GAATAATAGTGGTGGGGATC+AGG | 0.379125 | 3.1:-54546366 | MS.gene008305:CDS |
| GAGGTTTGGCCGTCTCCTTT+AGG | 0.389676 | 3.1:-54546836 | MS.gene008305:CDS |
| TGGGGATCAGGCACCTCCTA+TGG | 0.395072 | 3.1:-54546354 | MS.gene008305:CDS |
| AATGGTCGTAGCACCAACTA+TGG | 0.416139 | 3.1:-54546501 | MS.gene008305:CDS |
| ACCTCTGGTTGAGGATCATA+AGG | 0.423494 | 3.1:+54546854 | None:intergenic |
| ATGATCCTCAACCAGAGGTT+TGG | 0.426927 | 3.1:-54546850 | MS.gene008305:CDS |
| AGTATTTGAAAGATATCAAT+AGG | 0.431729 | 3.1:-54546571 | MS.gene008305:CDS |
| CTGGATCAGCACTAAGGTAC+TGG | 0.473176 | 3.1:+54546648 | None:intergenic |
| GCACCAACTATGGTGGCTAA+TGG | 0.475430 | 3.1:-54546491 | MS.gene008305:CDS |
| AAAGGAGACGGCCAAACCTC+TGG | 0.476094 | 3.1:+54546839 | None:intergenic |
| GTCTCCTTTAGGAGTTCAAA+GGG | 0.477655 | 3.1:-54546825 | MS.gene008305:CDS |
| CGTCTCCTTTAGGAGTTCAA+AGG | 0.479690 | 3.1:-54546826 | MS.gene008305:CDS |
| ATGAACTTGATGAATAATAG+TGG | 0.484658 | 3.1:-54546377 | MS.gene008305:CDS |
| GGAAGGCAACATTCAAGAAA+AGG | 0.489208 | 3.1:-54546952 | MS.gene008305:CDS |
| TCAATTGACCAAACAAAGAA+AGG | 0.490968 | 3.1:-54546705 | MS.gene008305:CDS |
| TTTGAGGCAGCGGATTCAAA+AGG | 0.492900 | 3.1:-54546735 | MS.gene008305:CDS |
| GGAGGGTTGAAATGTTGAGC+AGG | 0.493102 | 3.1:-54546550 | MS.gene008305:CDS |
| AGGTCAAGGTCAAACTCAAA+TGG | 0.513312 | 3.1:-54546519 | MS.gene008305:CDS |
| AGCACCCTTTGAACTCCTAA+AGG | 0.514637 | 3.1:+54546821 | None:intergenic |
| GTTGAAATGTTGAGCAGGAA+TGG | 0.522645 | 3.1:-54546545 | MS.gene008305:CDS |
| GTACCTAAGATTGAAGAGAA+TGG | 0.524167 | 3.1:-54546467 | MS.gene008305:CDS |
| GGGGATCAGGCACCTCCTAT+GGG | 0.527561 | 3.1:-54546353 | MS.gene008305:CDS |
| ACTCCATTAGCCACCATAGT+TGG | 0.543974 | 3.1:+54546488 | None:intergenic |
| TTTGAAAGATATCAATAGGA+GGG | 0.549226 | 3.1:-54546567 | MS.gene008305:CDS |
| AGCAGGAATGGTCAAGGTCA+AGG | 0.553703 | 3.1:-54546533 | MS.gene008305:CDS |
| GAGAATGGACAAGGGAGTCA+TGG | 0.556512 | 3.1:-54546452 | MS.gene008305:CDS |
| ACATTCAAGAAAAGGAAGAA+AGG | 0.560908 | 3.1:-54546944 | MS.gene008305:CDS |
| TCATCACCACCACCATGACT+AGG | 0.561427 | 3.1:-54547015 | None:intergenic |
| AATGAACGACTCTGCAAGGA+AGG | 0.561741 | 3.1:-54546969 | MS.gene008305:CDS |
| GACGGCCAAACCTCTGGTTG+AGG | 0.565198 | 3.1:+54546845 | None:intergenic |
| GGATTGACATTTCCCATAGG+AGG | 0.571905 | 3.1:+54546341 | None:intergenic |
| TCATAATGAACGACTCTGCA+AGG | 0.586799 | 3.1:-54546973 | MS.gene008305:CDS |
| ATTTGGCCAAAACCCATTTG+GGG | 0.587386 | 3.1:+54546319 | None:intergenic |
| TTTGGCCAAAACCCATTTGG+GGG | 0.595235 | 3.1:+54546320 | None:intergenic |
| ATTTGAAAGATATCAATAGG+AGG | 0.602830 | 3.1:-54546568 | MS.gene008305:CDS |
| TCCTTATGATCCTCAACCAG+AGG | 0.603338 | 3.1:-54546855 | MS.gene008305:CDS |
| GCATAACTGGATCAGCACTA+AGG | 0.605501 | 3.1:+54546642 | None:intergenic |
| AACTTGATGAATAATAGTGG+TGG | 0.606524 | 3.1:-54546374 | MS.gene008305:CDS |
| AAGATTGAAGAGAATGGACA+AGG | 0.608283 | 3.1:-54546461 | MS.gene008305:CDS |
| AGTGAACTCAGTACTCTATG+TGG | 0.630043 | 3.1:-54546905 | MS.gene008305:CDS |
| CTTTGAACTCCTAAAGGAGA+CGG | 0.641014 | 3.1:+54546827 | None:intergenic |
| AGTTATGCACAATATAAGCA+TGG | 0.643634 | 3.1:-54546627 | MS.gene008305:CDS |
| TTGATTTGAATGATATGGCA+TGG | 0.644556 | 3.1:-54546604 | MS.gene008305:CDS |
| ATGTTGAGCAGGAATGGTCA+AGG | 0.649347 | 3.1:-54546539 | MS.gene008305:CDS |
| GGTCGTAGCACCAACTATGG+TGG | 0.652064 | 3.1:-54546498 | MS.gene008305:CDS |
| ACTTGATGAATAATAGTGGT+GGG | 0.652318 | 3.1:-54546373 | MS.gene008305:CDS |
| CTTGATGAATAATAGTGGTG+GGG | 0.669667 | 3.1:-54546372 | MS.gene008305:CDS |
| AGATTGAAGAGAATGGACAA+GGG | 0.691703 | 3.1:-54546460 | MS.gene008305:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTATTTGAAAGATATCAAT+AGG | - | chr3.1:54546734-54546753 | MS.gene008305:CDS | 20.0% |
| ! | ATGAACTTGATGAATAATAG+TGG | - | chr3.1:54546928-54546947 | MS.gene008305:CDS | 25.0% |
| ! | ATTTGAAAGATATCAATAGG+AGG | - | chr3.1:54546737-54546756 | MS.gene008305:CDS | 25.0% |
| ! | TCTATTATCCTTTCTTTGTT+TGG | + | chr3.1:54546611-54546630 | None:intergenic | 25.0% |
| ! | TTTGAAAGATATCAATAGGA+GGG | - | chr3.1:54546738-54546757 | MS.gene008305:CDS | 25.0% |
| AACTTGATGAATAATAGTGG+TGG | - | chr3.1:54546931-54546950 | MS.gene008305:CDS | 30.0% | |
| ACATTCAAGAAAAGGAAGAA+AGG | - | chr3.1:54546361-54546380 | MS.gene008305:CDS | 30.0% | |
| ACTTGATGAATAATAGTGGT+GGG | - | chr3.1:54546932-54546951 | MS.gene008305:CDS | 30.0% | |
| AGTTATGCACAATATAAGCA+TGG | - | chr3.1:54546678-54546697 | MS.gene008305:CDS | 30.0% | |
| ATGCTTATATTGTGCATAAC+TGG | + | chr3.1:54546679-54546698 | None:intergenic | 30.0% | |
| ATTGGAACAAAGCAAAAAGA+TGG | - | chr3.1:54546531-54546550 | MS.gene008305:CDS | 30.0% | |
| GAAGAAAGGTCTAATGAAAA+AGG | - | chr3.1:54546375-54546394 | MS.gene008305:CDS | 30.0% | |
| TCAATTGACCAAACAAAGAA+AGG | - | chr3.1:54546600-54546619 | MS.gene008305:CDS | 30.0% | |
| ! | TTGATTTGAATGATATGGCA+TGG | - | chr3.1:54546701-54546720 | MS.gene008305:CDS | 30.0% |
| !! | CATGGTTGATTTGAATGATA+TGG | - | chr3.1:54546696-54546715 | MS.gene008305:CDS | 30.0% |
| !! | TTTTTGCTTTGTTCCAATTC+AGG | + | chr3.1:54546529-54546548 | None:intergenic | 30.0% |
| AAGATTGAAGAGAATGGACA+AGG | - | chr3.1:54546844-54546863 | MS.gene008305:CDS | 35.0% | |
| AGATTGAAGAGAATGGACAA+GGG | - | chr3.1:54546845-54546864 | MS.gene008305:CDS | 35.0% | |
| CTTGATGAATAATAGTGGTG+GGG | - | chr3.1:54546933-54546952 | MS.gene008305:CDS | 35.0% | |
| GTACCTAAGATTGAAGAGAA+TGG | - | chr3.1:54546838-54546857 | MS.gene008305:CDS | 35.0% | |
| TGTCCATTCTCTTCAATCTT+AGG | + | chr3.1:54546844-54546863 | None:intergenic | 35.0% | |
| ! | GTTCCAATTCAGGCATTTTT+CGG | + | chr3.1:54546519-54546538 | None:intergenic | 35.0% |
| !! | ACATGTTTTGGACATGAACA+TGG | - | chr3.1:54546879-54546898 | MS.gene008305:CDS | 35.0% |
| !!! | TGAACCAAGAGAGTTTTTTG+AGG | - | chr3.1:54546554-54546573 | MS.gene008305:CDS | 35.0% |
| AGGTCAAGGTCAAACTCAAA+TGG | - | chr3.1:54546786-54546805 | MS.gene008305:CDS | 40.0% | |
| AGTGAACTCAGTACTCTATG+TGG | - | chr3.1:54546400-54546419 | MS.gene008305:CDS | 40.0% | |
| ATTTGGCCAAAACCCATTTG+GGG | + | chr3.1:54546989-54547008 | None:intergenic | 40.0% | |
| CTTTGAACTCCTAAAGGAGA+CGG | + | chr3.1:54546481-54546500 | None:intergenic | 40.0% | |
| GAAATGTCAATCCCCCAAAT+GGG | - | chr3.1:54546974-54546993 | MS.gene008305:CDS | 40.0% | |
| GATTTGGCCAAAACCCATTT+GGG | + | chr3.1:54546990-54547009 | None:intergenic | 40.0% | |
| GGAAGGCAACATTCAAGAAA+AGG | - | chr3.1:54546353-54546372 | MS.gene008305:CDS | 40.0% | |
| GTTCCGAAAAATGCCTGAAT+TGG | - | chr3.1:54546513-54546532 | MS.gene008305:CDS | 40.0% | |
| GTTGAAATGTTGAGCAGGAA+TGG | - | chr3.1:54546760-54546779 | MS.gene008305:CDS | 40.0% | |
| TCATAATGAACGACTCTGCA+AGG | - | chr3.1:54546332-54546351 | MS.gene008305:CDS | 40.0% | |
| ! | GAGTCATGGTCAACATGTTT+TGG | - | chr3.1:54546867-54546886 | MS.gene008305:CDS | 40.0% |
| ! | GTCTCCTTTAGGAGTTCAAA+GGG | - | chr3.1:54546480-54546499 | MS.gene008305:CDS | 40.0% |
| !!! | AAGAGAGTTTTTTGAGGCAG+CGG | - | chr3.1:54546560-54546579 | MS.gene008305:CDS | 40.0% |
| AATGAACGACTCTGCAAGGA+AGG | - | chr3.1:54546336-54546355 | MS.gene008305:CDS | 45.0% | |
| AATGGTCGTAGCACCAACTA+TGG | - | chr3.1:54546804-54546823 | MS.gene008305:CDS | 45.0% | |
| ACCTCTGGTTGAGGATCATA+AGG | + | chr3.1:54546454-54546473 | None:intergenic | 45.0% | |
| ACTCCATTAGCCACCATAGT+TGG | + | chr3.1:54546820-54546839 | None:intergenic | 45.0% | |
| AGCACCCTTTGAACTCCTAA+AGG | + | chr3.1:54546487-54546506 | None:intergenic | 45.0% | |
| ATGATCCTCAACCAGAGGTT+TGG | - | chr3.1:54546455-54546474 | MS.gene008305:CDS | 45.0% | |
| ATGTTGAGCAGGAATGGTCA+AGG | - | chr3.1:54546766-54546785 | MS.gene008305:CDS | 45.0% | |
| GCATAACTGGATCAGCACTA+AGG | + | chr3.1:54546666-54546685 | None:intergenic | 45.0% | |
| GCTGCCTCAAAAAACTCTCT+TGG | + | chr3.1:54546561-54546580 | None:intergenic | 45.0% | |
| GGAAATGTCAATCCCCCAAA+TGG | - | chr3.1:54546973-54546992 | MS.gene008305:CDS | 45.0% | |
| GGATTGACATTTCCCATAGG+AGG | + | chr3.1:54546967-54546986 | None:intergenic | 45.0% | |
| GGATTTGGCCAAAACCCATT+TGG | + | chr3.1:54546991-54547010 | None:intergenic | 45.0% | |
| TCCTTATGATCCTCAACCAG+AGG | - | chr3.1:54546450-54546469 | MS.gene008305:CDS | 45.0% | |
| TTTGGCCAAAACCCATTTGG+GGG | + | chr3.1:54546988-54547007 | None:intergenic | 45.0% | |
| ! | CGTCTCCTTTAGGAGTTCAA+AGG | - | chr3.1:54546479-54546498 | MS.gene008305:CDS | 45.0% |
| ! | GAATAATAGTGGTGGGGATC+AGG | - | chr3.1:54546939-54546958 | MS.gene008305:CDS | 45.0% |
| ! | TTTGAGGCAGCGGATTCAAA+AGG | - | chr3.1:54546570-54546589 | MS.gene008305:CDS | 45.0% |
| !! | TCAATCCCCCAAATGGGTTT+TGG | - | chr3.1:54546980-54546999 | MS.gene008305:CDS | 45.0% |
| AGCAGGAATGGTCAAGGTCA+AGG | - | chr3.1:54546772-54546791 | MS.gene008305:CDS | 50.0% | |
| CTGGATCAGCACTAAGGTAC+TGG | + | chr3.1:54546660-54546679 | None:intergenic | 50.0% | |
| GAGAATGGACAAGGGAGTCA+TGG | - | chr3.1:54546853-54546872 | MS.gene008305:CDS | 50.0% | |
| GCACCAACTATGGTGGCTAA+TGG | - | chr3.1:54546814-54546833 | MS.gene008305:CDS | 50.0% | |
| GGAGGGTTGAAATGTTGAGC+AGG | - | chr3.1:54546755-54546774 | MS.gene008305:CDS | 50.0% | |
| GGGGGATTGACATTTCCCAT+AGG | + | chr3.1:54546970-54546989 | None:intergenic | 50.0% | |
| AAAGGAGACGGCCAAACCTC+TGG | + | chr3.1:54546469-54546488 | None:intergenic | 55.0% | |
| GAGGTTTGGCCGTCTCCTTT+AGG | - | chr3.1:54546469-54546488 | MS.gene008305:CDS | 55.0% | |
| GGTCGTAGCACCAACTATGG+TGG | - | chr3.1:54546807-54546826 | MS.gene008305:CDS | 55.0% | |
| GACGGCCAAACCTCTGGTTG+AGG | + | chr3.1:54546463-54546482 | None:intergenic | 60.0% | |
| GGGGATCAGGCACCTCCTAT+GGG | - | chr3.1:54546952-54546971 | MS.gene008305:CDS | 60.0% | |
| TGGGGATCAGGCACCTCCTA+TGG | - | chr3.1:54546951-54546970 | MS.gene008305:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 54546304 | 54547023 | 54546304 | ID=MS.gene008305 |
| chr3.1 | mRNA | 54546304 | 54547023 | 54546304 | ID=MS.gene008305.t1;Parent=MS.gene008305 |
| chr3.1 | exon | 54546304 | 54547023 | 54546304 | ID=MS.gene008305.t1.exon1;Parent=MS.gene008305.t1 |
| chr3.1 | CDS | 54546304 | 54547023 | 54546304 | ID=cds.MS.gene008305.t1;Parent=MS.gene008305.t1 |
| Gene Sequence |
| Protein sequence |
