AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene008318

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008318.t1 MTR_3g064840 97.425 466 3 5 1 461 1 462 0.0 908
MS.gene008318.t1 MTR_8g066310 48.837 215 71 6 257 451 157 352 2.44e-52 180
MS.gene008318.t1 MTR_6g071625 35.666 443 194 16 18 451 7 367 8.74e-50 174
MS.gene008318.t1 MTR_5g029470 50.000 222 67 8 255 453 201 401 6.47e-48 170
MS.gene008318.t1 MTR_1g021520 47.179 195 74 5 267 461 120 285 1.87e-41 149
MS.gene008318.t1 MTR_7g069660 64.179 67 23 1 266 332 65 130 3.41e-21 95.1
MS.gene008318.t1 MTR_0223s0040 65.517 58 20 0 272 329 17 74 2.25e-20 91.3
MS.gene008318.t1 MTR_1g112370 63.793 58 21 0 272 329 21 78 7.09e-20 90.9
MS.gene008318.t1 MTR_2g084230 65.574 61 21 0 272 332 96 156 1.34e-19 89.7
MS.gene008318.t1 MTR_2g023580 65.625 64 21 1 266 329 49 111 1.85e-19 87.8
MS.gene008318.t1 MTR_1g080330 43.860 114 48 3 253 352 143 254 1.92e-19 88.6
MS.gene008318.t1 MTR_2g084230 68.966 58 18 0 272 329 96 153 2.43e-19 89.7
MS.gene008318.t1 MTR_1g080330 43.860 114 48 3 253 352 143 254 2.92e-19 89.7
MS.gene008318.t1 MTR_8g086410 67.241 58 19 0 272 329 110 167 8.03e-19 89.0
MS.gene008318.t1 MTR_8g086410 67.241 58 19 0 272 329 108 165 8.61e-19 88.6
MS.gene008318.t1 MTR_7g093030 48.837 86 41 2 275 359 214 297 3.91e-18 86.3
MS.gene008318.t1 MTR_7g098250 50.000 86 43 0 274 359 263 348 5.63e-18 86.7
MS.gene008318.t1 MTR_7g093030 51.250 80 36 2 275 353 214 291 5.65e-18 84.7
MS.gene008318.t1 MTR_2g016220 62.295 61 23 0 272 332 88 148 1.46e-17 84.3
MS.gene008318.t1 MTR_2g016220 62.295 61 23 0 272 332 88 148 1.55e-17 84.3
MS.gene008318.t1 MTR_8g086410 64.286 56 20 0 272 327 110 165 5.36e-17 83.2
MS.gene008318.t1 MTR_7g115530 54.930 71 30 1 274 344 219 287 9.41e-17 82.0
MS.gene008318.t1 MTR_3g450310 58.929 56 23 0 274 329 20 75 1.47e-16 78.6
MS.gene008318.t1 MTR_7g115530 64.286 56 20 0 274 329 219 274 1.51e-16 80.5
MS.gene008318.t1 MTR_5g027440 67.925 53 17 0 274 326 26 78 3.22e-16 79.3
MS.gene008318.t1 MTR_7g115530 64.286 56 20 0 274 329 219 274 3.25e-16 80.1
MS.gene008318.t1 MTR_1g053835 57.377 61 26 0 275 335 260 320 4.06e-16 80.5
MS.gene008318.t1 MTR_7g115530 64.286 56 20 0 274 329 219 274 4.23e-16 80.5
MS.gene008318.t1 MTR_2g016220 58.462 65 23 1 272 332 88 152 1.17e-15 79.0
MS.gene008318.t1 MTR_7g088070 63.636 55 20 0 275 329 52 106 1.66e-15 77.0
MS.gene008318.t1 MTR_1g090670 54.930 71 31 1 274 344 45 114 1.79e-15 77.4
MS.gene008318.t1 MTR_7g088070 63.636 55 20 0 275 329 52 106 1.81e-15 77.0
MS.gene008318.t1 MTR_2g027800 54.286 70 31 1 274 343 40 108 1.95e-15 77.4
MS.gene008318.t1 MTR_2g027860 63.636 55 20 0 275 329 51 105 5.23e-15 76.3
MS.gene008318.t1 MTR_6g444980 51.429 70 34 0 274 343 36 105 5.24e-15 76.6
MS.gene008318.t1 MTR_6g444980 51.429 70 34 0 274 343 36 105 6.52e-15 76.6
MS.gene008318.t1 MTR_2g086450 58.929 56 23 0 274 329 46 101 1.03e-14 75.9
MS.gene008318.t1 MTR_2g027800 62.264 53 20 0 274 326 40 92 2.54e-14 73.9
MS.gene008318.t1 MTR_7g115530 60.000 55 22 0 274 328 219 273 3.30e-14 73.6
MS.gene008318.t1 MTR_7g115530 66.000 50 17 0 274 323 219 268 4.63e-14 72.8
MS.gene008318.t1 MTR_6g032990 54.237 59 27 0 274 332 43 101 5.03e-14 73.9
MS.gene008318.t1 MTR_5g041350 52.632 57 27 0 274 330 16 72 6.44e-14 73.2
MS.gene008318.t1 MTR_4g081710 54.386 57 26 0 274 330 18 74 1.81e-13 71.6
MS.gene008318.t1 MTR_1g053830 49.180 61 31 0 275 335 20 80 4.24e-13 65.5
MS.gene008318.t1 MTR_1g053800 37.615 109 52 3 275 367 179 287 1.10e-12 69.3
MS.gene008318.t1 MTR_7g068600 43.373 83 44 1 275 354 15 97 2.33e-12 67.0
MS.gene008318.t1 MTR_4g113140 48.529 68 35 0 272 339 234 301 1.66e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008318.t1 AT5G16560 40.122 491 173 17 1 458 1 403 1.04e-80 256
MS.gene008318.t1 AT1G32240 59.627 161 41 4 233 389 186 326 1.56e-49 173
MS.gene008318.t1 AT1G32240 57.225 173 48 5 223 389 174 326 3.99e-49 172
MS.gene008318.t1 AT4G17695 34.000 350 131 13 113 454 62 319 7.39e-40 146
MS.gene008318.t1 AT5G42630 72.727 88 24 0 268 355 100 187 2.94e-36 133
MS.gene008318.t1 AT5G42630 72.727 88 24 0 268 355 100 187 1.15e-35 133
MS.gene008318.t1 AT2G38300 33.838 198 100 6 253 447 38 207 1.23e-21 96.3
MS.gene008318.t1 AT2G40260 33.047 233 111 7 235 461 62 255 4.64e-20 92.4
MS.gene008318.t1 AT4G04605 67.241 58 19 0 272 329 13 70 4.88e-20 89.0
MS.gene008318.t1 AT2G02060 65.625 64 20 1 273 334 29 92 9.75e-20 89.0
MS.gene008318.t1 AT2G02060 65.625 64 20 1 273 334 29 92 9.75e-20 89.0
MS.gene008318.t1 AT1G14600 66.102 59 20 0 273 331 23 81 2.11e-19 88.2
MS.gene008318.t1 AT4G04580 59.322 59 24 0 274 332 15 73 3.28e-18 82.4
MS.gene008318.t1 AT2G42660 66.071 56 19 0 274 329 51 106 1.35e-17 82.8
MS.gene008318.t1 AT4G04555 58.621 58 24 0 272 329 13 70 1.81e-17 78.2
MS.gene008318.t1 AT5G45580 54.430 79 26 2 248 326 8 76 2.42e-17 82.4
MS.gene008318.t1 AT5G45580 67.925 53 17 0 274 326 8 60 4.50e-17 81.3
MS.gene008318.t1 AT4G28610 58.730 63 26 0 275 337 227 289 5.51e-16 80.1
MS.gene008318.t1 AT2G01060 63.636 55 20 0 275 329 17 71 2.83e-15 76.6
MS.gene008318.t1 AT3G12730 60.714 56 22 0 274 329 24 79 3.38e-15 75.5
MS.gene008318.t1 AT1G32240 54.651 86 28 3 308 389 1 79 4.38e-15 72.8
MS.gene008318.t1 AT3G04450 55.714 70 30 1 261 329 225 294 5.82e-15 75.9
MS.gene008318.t1 AT5G29000 55.385 65 29 0 275 339 233 297 7.20e-15 75.9
MS.gene008318.t1 AT4G13640 62.264 53 20 0 274 326 38 90 7.67e-15 75.5
MS.gene008318.t1 AT4G13640 62.264 53 20 0 274 326 38 90 7.83e-15 75.5
MS.gene008318.t1 AT1G79430 50.704 71 35 0 274 344 35 105 9.05e-15 75.9
MS.gene008318.t1 AT5G29000 63.636 55 20 0 275 329 190 244 1.02e-14 75.9
MS.gene008318.t1 AT5G29000 63.636 55 20 0 275 329 190 244 1.02e-14 75.9
MS.gene008318.t1 AT3G04450 55.714 70 30 1 261 329 225 294 1.19e-14 76.3
MS.gene008318.t1 AT3G04450 55.714 70 30 1 261 329 185 254 1.31e-14 75.9
MS.gene008318.t1 AT3G04450 55.714 70 30 1 261 329 185 254 1.31e-14 75.9
MS.gene008318.t1 AT3G24120 55.000 60 27 0 274 333 42 101 1.39e-14 74.7
MS.gene008318.t1 AT3G24120 55.000 60 27 0 274 333 42 101 1.40e-14 74.7
MS.gene008318.t1 AT5G29000 63.636 55 20 0 275 329 233 287 1.50e-14 75.9
MS.gene008318.t1 AT5G18240 52.308 65 31 0 274 338 46 110 1.79e-14 75.5
MS.gene008318.t1 AT5G18240 52.308 65 31 0 274 338 46 110 1.79e-14 75.5
MS.gene008318.t1 AT5G06800 56.364 55 24 0 275 329 194 248 1.85e-14 73.9
MS.gene008318.t1 AT5G18240 52.308 65 31 0 274 338 46 110 1.91e-14 75.5
MS.gene008318.t1 AT5G18240 52.308 65 31 0 274 338 46 110 1.93e-14 75.5
MS.gene008318.t1 AT5G18240 52.308 65 31 0 274 338 46 110 1.93e-14 75.5
MS.gene008318.t1 AT3G04030 49.231 65 33 0 274 338 46 110 3.86e-14 74.3
MS.gene008318.t1 AT5G06800 40.698 86 48 2 275 359 194 277 3.95e-14 74.3
MS.gene008318.t1 AT5G06800 37.079 89 52 1 275 359 194 282 4.38e-14 73.9
MS.gene008318.t1 AT3G04030 49.231 65 33 0 274 338 46 110 4.45e-14 74.3
MS.gene008318.t1 AT2G20400 57.812 64 27 0 275 338 233 296 5.37e-14 73.9
MS.gene008318.t1 AT2G20400 57.143 63 27 0 275 337 233 295 9.18e-14 73.2
MS.gene008318.t1 AT3G13040 61.818 55 21 0 275 329 243 297 2.51e-13 72.0
MS.gene008318.t1 AT3G13040 61.818 55 21 0 275 329 243 297 2.51e-13 72.0
MS.gene008318.t1 AT3G13040 61.818 55 21 0 275 329 243 297 2.51e-13 72.0
MS.gene008318.t1 AT2G06020 47.436 78 40 1 249 326 63 139 2.91e-13 70.9
MS.gene008318.t1 AT1G69580 50.877 57 28 0 274 330 35 91 3.11e-12 68.2
MS.gene008318.t1 AT2G03500 45.652 92 44 2 267 358 227 312 3.21e-12 68.6
MS.gene008318.t1 AT1G69580 50.877 57 28 0 274 330 35 91 3.40e-12 67.8
MS.gene008318.t1 AT3G04030 47.692 65 33 1 274 338 46 109 1.04e-11 67.0
MS.gene008318.t1 AT1G68670 43.678 87 47 1 272 358 214 298 2.15e-11 65.5
MS.gene008318.t1 AT5G58080 37.405 131 68 6 272 390 193 321 4.61e-11 65.5

Find 92 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTCCATGGCTGGTAAAA+AGG 0.206571 3.1:-54343245 None:intergenic
GTTCATGCTGTTGAGCTTCT+TGG 0.223702 3.1:+54343637 MS.gene008318:CDS
GTACTTGTCCATCGCATTCT+TGG 0.279145 3.1:-54343598 None:intergenic
AGAATTATGAGGTTCATAAT+TGG 0.296903 3.1:-54342900 None:intergenic
CACATGAATCACATAAATTA+TGG 0.301972 3.1:+54343136 MS.gene008318:CDS
CATCATCATCACTCACACTA+TGG 0.323012 3.1:+54343490 MS.gene008318:CDS
GAAGGAGACGGAGTTGAATT+AGG 0.345696 3.1:-54343310 None:intergenic
CCACCATTGCTTCCAATTTG+TGG 0.346594 3.1:-54344953 None:intergenic
GGTGTTGTTGATGTTGAAAT+TGG 0.348173 3.1:-54342806 None:intergenic
ACTCATCCACCAACACTCTA+TGG 0.365181 3.1:+54345038 MS.gene008318:CDS
ATTTGATGTCCTCCTGATAT+TGG 0.366341 3.1:-54347090 None:intergenic
GACAAACCTGCAGCTTCTTC+AGG 0.367603 3.1:+54344548 MS.gene008318:CDS
GAGGATGATGTGCCACAAAT+TGG 0.387455 3.1:+54344941 MS.gene008318:CDS
TGGTGATATAAACACATCTT+TGG 0.387535 3.1:-54343283 None:intergenic
CCAAGCTTGGAGTTCACATT+AGG 0.389593 3.1:+54348008 MS.gene008318:CDS
TGTCCTTTGCCATTCCAATC+TGG 0.391114 3.1:-54348035 None:intergenic
TAATCCATATCTTGCTGTAT+TGG 0.398561 3.1:-54345016 None:intergenic
TTTGGACTTGTTTGTGGCCA+TGG 0.402795 3.1:-54347027 None:intergenic
TTCCAATCACAACCAATATC+AGG 0.403005 3.1:+54347078 MS.gene008318:CDS
ATCAGGAGGACATCAAATTC+AGG 0.406345 3.1:+54347095 MS.gene008318:CDS
TCTCTTGAATGTTCCATGGC+TGG 0.423245 3.1:-54343253 None:intergenic
CTCCTGATATTGGTTGTGAT+TGG 0.426736 3.1:-54347080 None:intergenic
TAATTCTTCAAGAACAACTT+TGG 0.432310 3.1:+54342916 MS.gene008318:CDS
TAGACTGGAATCCCTTTGAT+TGG 0.435250 3.1:-54343205 None:intergenic
TAGACCAATACAGCAAGATA+TGG 0.437170 3.1:+54345012 MS.gene008318:CDS
ATCAGTTCCAATACTGACTT+TGG 0.438924 3.1:-54344000 None:intergenic
CTCTATGGAGTAATTCTTCA+AGG 0.442637 3.1:+54345053 MS.gene008318:CDS
CTGAAACCATCTATGTCGTT+TGG 0.446505 3.1:-54347045 None:intergenic
TTAGGCCTTTCAGATGGATC+TGG 0.451188 3.1:+54344917 MS.gene008318:intron
TCACATTAGGCATACCAGAT+TGG 0.452124 3.1:+54348021 MS.gene008318:CDS
GTTATTAAACCTTGTGGCTA+CGG 0.456769 3.1:-54343428 None:intergenic
ACAAGTCCAAACGACATAGA+TGG 0.458406 3.1:+54347039 MS.gene008318:CDS
ATGTCGTTTGGACTTGTTTG+TGG 0.463624 3.1:-54347033 None:intergenic
CACTCACACTATGGGAGTGT+TGG 0.469128 3.1:+54343499 MS.gene008318:CDS
CAGCTCAAGAACAATTTGTC+AGG 0.473778 3.1:+54347963 MS.gene008318:CDS
GCTCACACTGAACTATCTCT+TGG 0.484804 3.1:+54342950 MS.gene008318:CDS
CCTAATGTGAACTCCAAGCT+TGG 0.485539 3.1:-54348008 None:intergenic
GGTTGTGATTGGAAGATAGT+TGG 0.486453 3.1:-54347069 None:intergenic
CATGCTGTTGAGCTTCTTGG+TGG 0.491060 3.1:+54343640 MS.gene008318:CDS
AGAGGTGAAGATGACGAAGA+AGG 0.493765 3.1:-54343328 None:intergenic
ATACAATACATACCTGCAAA+TGG 0.497480 3.1:-54344059 None:intergenic
TCTATAAGCCGCAGAGCCAC+TGG 0.501461 3.1:-54343401 None:intergenic
GTTGTTCTTGAAGAATTATG+AGG 0.504302 3.1:-54342911 None:intergenic
CTAATGTGAACTCCAAGCTT+GGG 0.507483 3.1:-54348007 None:intergenic
AAAGTCAGTATTGGAACTGA+TGG 0.515750 3.1:+54344002 MS.gene008318:CDS
TTCAATGAAAATCCCTTCCA+AGG 0.520306 3.1:-54342783 None:intergenic
AGCAACACCAAAGTCAGTAT+TGG 0.520531 3.1:+54343993 MS.gene008318:CDS
AAGCATCCATGATGAGATCA+AGG 0.522822 3.1:+54343536 MS.gene008318:CDS
CTAAAGAAGATGCCCTTGGA+AGG 0.522865 3.1:+54342770 None:intergenic
CACTATGGGAGTGTTGGACT+TGG 0.532107 3.1:+54343505 MS.gene008318:CDS
AGTGAGGAAAATGAGCTTGT+TGG 0.536485 3.1:-54343048 None:intergenic
ATTACTCCATAGAGTGTTGG+TGG 0.540356 3.1:-54345044 None:intergenic
GAAGAATTAGAAGTACTTGG+TGG 0.543073 3.1:-54342854 None:intergenic
GGTTGTTGTTGATGTTGTTG+TGG 0.543246 3.1:-54343004 None:intergenic
AATGAACGGTTATGATAGAC+TGG 0.547430 3.1:-54343220 None:intergenic
ATCATCATCACTCACACTAT+GGG 0.548466 3.1:+54343491 MS.gene008318:CDS
AAGGGTTAAGACCAATCAAA+GGG 0.548805 3.1:+54343194 MS.gene008318:CDS
AGAGTGTAAGAACCCAAGCT+TGG 0.553018 3.1:+54347995 MS.gene008318:CDS
AAAGAAGAATTAGAAGTACT+TGG 0.553090 3.1:-54342857 None:intergenic
TGATGATGATGGTGGTGCAA+TGG 0.555394 3.1:-54343475 None:intergenic
TTATGAGGTTCATAATTGGA+TGG 0.559155 3.1:-54342896 None:intergenic
GAAGGGTTAAGACCAATCAA+AGG 0.563565 3.1:+54343193 MS.gene008318:CDS
TAAAGAAGATGCCCTTGGAA+GGG 0.566491 3.1:+54342771 None:intergenic
GTTGGATTAGGCCTTTCAGA+TGG 0.566808 3.1:+54344911 MS.gene008318:intron
CCACAAATTGGAAGCAATGG+TGG 0.568581 3.1:+54344953 MS.gene008318:CDS
GAATTACCTGAAGAAGCTGC+AGG 0.569581 3.1:-54344554 None:intergenic
AGGTTCGTTATTAAACCTTG+TGG 0.572358 3.1:-54343434 None:intergenic
GTGTCATCAACATCATCAGA+AGG 0.572682 3.1:+54343175 MS.gene008318:CDS
GGATATTGATGAGATTTGAA+AGG 0.577391 3.1:-54343454 None:intergenic
CTTATGTGAAGAGAAAGATC+AGG 0.587834 3.1:-54342830 None:intergenic
AGAATTACTCCATAGAGTGT+TGG 0.593216 3.1:-54345047 None:intergenic
GTGCCACAAATTGGAAGCAA+TGG 0.595960 3.1:+54344950 MS.gene008318:CDS
GAAGATGACGAAGAAGGAGA+CGG 0.598612 3.1:-54343322 None:intergenic
CAGCATGAACAAATCTAGCA+TGG 0.601911 3.1:-54343624 None:intergenic
ATTAAACCTTGTGGCTACGG+CGG 0.603335 3.1:-54343425 None:intergenic
ATACCAGATTGGAATGGCAA+AGG 0.624282 3.1:+54348032 MS.gene008318:CDS
TGAGAGCACCAAGAATGCGA+TGG 0.625062 3.1:+54343590 MS.gene008318:CDS
CCTCTCCAGATCCATCTGAA+AGG 0.630610 3.1:-54344922 None:intergenic
TTGTTGTGATGTTGAAAGTG+AGG 0.638425 3.1:-54343064 None:intergenic
TCAATGAAAATCCCTTCCAA+GGG 0.641425 3.1:-54342782 None:intergenic
TGTCATCAACATCATCAGAA+GGG 0.646503 3.1:+54343176 MS.gene008318:CDS
ATTGGAACTGATGGATGTGA+AGG 0.646666 3.1:+54344011 MS.gene008318:CDS
TTTAAACTCCAGTGGCTCTG+CGG 0.648557 3.1:+54343393 MS.gene008318:CDS
CCTTTCAGATGGATCTGGAG+AGG 0.652978 3.1:+54344922 MS.gene008318:CDS
TTAGGCATACCAGATTGGAA+TGG 0.661276 3.1:+54348026 MS.gene008318:CDS
ATAGAGCCGCCGTAGCCACA+AGG 0.664238 3.1:+54343419 MS.gene008318:CDS
ATGTGAAGAGAAAGATCAGG+TGG 0.665926 3.1:-54342827 None:intergenic
GTGAGTGATGATGATGATGG+TGG 0.675410 3.1:-54343483 None:intergenic
ACGGAGTTGAATTAGGCATG+TGG 0.690652 3.1:-54343303 None:intergenic
CAATCACAACCAATATCAGG+AGG 0.694629 3.1:+54347081 MS.gene008318:CDS
AGTGTGAGTGATGATGATGA+TGG 0.709391 3.1:-54343486 None:intergenic
TGATCAGTAGTAGAGAACCA+TGG 0.715843 3.1:+54347010 MS.gene008318:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTAATAAATTTATTTT+TGG + chr3.1:54344871-54344890 MS.gene008318:intron 0.0%
!! ATATATCTTATTATACAAAT+AGG + chr3.1:54344397-54344416 MS.gene008318:intron 10.0%
!! GTAACATATAAATTTATAAA+TGG + chr3.1:54345825-54345844 MS.gene008318:intron 10.0%
!!! AATATTATTTTTCCAATAAT+TGG - chr3.1:54346774-54346793 None:intergenic 10.0%
!!! GAAATCTAAAATTAAATTAA+AGG + chr3.1:54347526-54347545 MS.gene008318:intron 10.0%
!!! TTATATATGTTTTTTAAAGT+TGG + chr3.1:54345658-54345677 MS.gene008318:intron 10.0%
!!! TTTAATTTTAGATTTCATTT+TGG - chr3.1:54347522-54347541 None:intergenic 10.0%
!!! TTTTCTTCTTTTAAATTTTT+TGG + chr3.1:54343697-54343716 MS.gene008318:intron 10.0%
!!! TTTTTATATATATGTTTAAG+AGG - chr3.1:54344774-54344793 None:intergenic 10.0%
!!! TTTTTTATGAAGAATAAAAA+GGG + chr3.1:54345256-54345275 MS.gene008318:intron 10.0%
!! AAAAAAATGTGAAAAGAATA+AGG - chr3.1:54344693-54344712 None:intergenic 15.0%
!! AAATATCTTGATTACTATAA+AGG - chr3.1:54346337-54346356 None:intergenic 15.0%
!! ATATATAAAAAATTTAAGCC+AGG - chr3.1:54344811-54344830 None:intergenic 15.0%
!! ATATGAAATTGAAATGAAAT+TGG + chr3.1:54344095-54344114 MS.gene008318:intron 15.0%
!! ATCTTAATATTTGTAACTTA+AGG + chr3.1:54347410-54347429 MS.gene008318:intron 15.0%
!! CTTCAAATTAATTTAAACTT+AGG - chr3.1:54346122-54346141 None:intergenic 15.0%
!! GAAACCTAAAATTAATTTAA+GGG - chr3.1:54347211-54347230 None:intergenic 15.0%
!! GAGTAATTATAAATTAATGT+TGG + chr3.1:54344893-54344912 MS.gene008318:intron 15.0%
!! GTAATTATTAGACTAATTAA+GGG - chr3.1:54344608-54344627 None:intergenic 15.0%
!! TATAAATTGTTAATGTTACT+TGG - chr3.1:54345643-54345662 None:intergenic 15.0%
!! TATCAAAAACAAAATAAAGA+AGG - chr3.1:54346189-54346208 None:intergenic 15.0%
!! TATGAAATTGAAATGAAATT+GGG + chr3.1:54344096-54344115 MS.gene008318:intron 15.0%
!! TGAAAAAAGTTTATAAATTC+TGG + chr3.1:54346818-54346837 MS.gene008318:intron 15.0%
!! TGAAACCTAAAATTAATTTA+AGG - chr3.1:54347212-54347231 None:intergenic 15.0%
!! TTAAAAGAAGAAAATTAAAG+TGG - chr3.1:54343691-54343710 None:intergenic 15.0%
!! TTATAAATTAATGTTGGATT+AGG + chr3.1:54344899-54344918 MS.gene008318:intron 15.0%
!!! AAGATATTTTAAAAATTGAG+AGG + chr3.1:54346348-54346367 MS.gene008318:intron 15.0%
!!! CTTAATTAGTCTAATAATTA+CGG + chr3.1:54344607-54344626 MS.gene008318:intron 15.0%
!!! CTTTTTTATGAAGAATAAAA+AGG + chr3.1:54345255-54345274 MS.gene008318:intron 15.0%
!!! TAATTGAAAGCATTTTTTTT+TGG - chr3.1:54347751-54347770 None:intergenic 15.0%
!!! TCTTTTAAATTTTTTGGATA+CGG + chr3.1:54343703-54343722 MS.gene008318:intron 15.0%
!! AAACCTAACAAATTCTAATA+TGG + chr3.1:54345878-54345897 MS.gene008318:intron 20.0%
!! AACATATGGTAATAATTTCA+TGG - chr3.1:54345938-54345957 None:intergenic 20.0%
!! AATACATAGTCAATATATGA+AGG - chr3.1:54345617-54345636 None:intergenic 20.0%
!! AATATATGAAGGACTTAATT+TGG - chr3.1:54345606-54345625 None:intergenic 20.0%
!! AATCTAATACAGTTGTAAAA+TGG - chr3.1:54343741-54343760 None:intergenic 20.0%
!! AATGAAACGAAAAAAACTTA+AGG - chr3.1:54347302-54347321 None:intergenic 20.0%
!! ACAAAATAAAGAAGGTTTAT+AGG - chr3.1:54346181-54346200 None:intergenic 20.0%
!! AGATATTTCATGTTTACTTA+AGG - chr3.1:54346511-54346530 None:intergenic 20.0%
!! ATATATGAAGGACTTAATTT+GGG - chr3.1:54345605-54345624 None:intergenic 20.0%
!! ATTATATTAGAATAACCATG+TGG + chr3.1:54346008-54346027 MS.gene008318:intron 20.0%
!! CAAAAGTAAATAAACAAAGT+CGG - chr3.1:54345178-54345197 None:intergenic 20.0%
!! CAAGTATATGATATATTGAT+AGG - chr3.1:54346671-54346690 None:intergenic 20.0%
!! CGTAATTATTAGACTAATTA+AGG - chr3.1:54344609-54344628 None:intergenic 20.0%
!! CTATAATTGAAATCTGTTTA+TGG - chr3.1:54345718-54345737 None:intergenic 20.0%
!! GGAAAAATAATATTCTACAT+TGG + chr3.1:54346780-54346799 MS.gene008318:intron 20.0%
!! TAAGTGGAAATTTAAGTAAA+GGG - chr3.1:54345978-54345997 None:intergenic 20.0%
!! TATAATTCGTGTAATTTAAG+TGG - chr3.1:54345994-54346013 None:intergenic 20.0%
!! TCCTAATATTACAAATTTCA+AGG + chr3.1:54345511-54345530 MS.gene008318:intron 20.0%
!! TTAAGTGGAAATTTAAGTAA+AGG - chr3.1:54345979-54345998 None:intergenic 20.0%
!! TTATTACCATATGTTGTATT+TGG + chr3.1:54345943-54345962 MS.gene008318:intron 20.0%
!! TTCACATATATAGACTTTAA+AGG - chr3.1:54344733-54344752 None:intergenic 20.0%
!!! AAGTTTTTTTCGTTTCATTT+TGG + chr3.1:54347303-54347322 MS.gene008318:intron 20.0%
!!! ACATTTTAGTTTATCATTTC+GGG + chr3.1:54347378-54347397 MS.gene008318:intron 20.0%
!!! ATACACCTTTTTTTTTTTGA+GGG + chr3.1:54346148-54346167 MS.gene008318:intron 20.0%
!!! ATTGTTGTTGTTATTATGTT+TGG + chr3.1:54343920-54343939 MS.gene008318:intron 20.0%
!!! CTTTTGCTTTTATTTTTTGA+TGG - chr3.1:54346058-54346077 None:intergenic 20.0%
!!! GACATTTTAGTTTATCATTT+CGG + chr3.1:54347377-54347396 MS.gene008318:intron 20.0%
!!! TAATTTAGATGGTGAATTTT+AGG + chr3.1:54343970-54343989 MS.gene008318:intron 20.0%
!!! TAGTCCCTTAAATTAATTTT+AGG + chr3.1:54347204-54347223 MS.gene008318:intron 20.0%
!!! TATACACCTTTTTTTTTTTG+AGG + chr3.1:54346147-54346166 MS.gene008318:intron 20.0%
!!! TATGTTTGGTGTTATATTAT+AGG + chr3.1:54343934-54343953 MS.gene008318:intron 20.0%
!!! TCAAAAAAAAAAAGGTGTAT+AGG - chr3.1:54346148-54346167 None:intergenic 20.0%
!!! TGATGCAATTTTTTTTTTCT+TGG + chr3.1:54346960-54346979 MS.gene008318:intron 20.0%
! AAAAAATTGCATCAGTTCAA+TGG - chr3.1:54346954-54346973 None:intergenic 25.0%
! AAATTTAAGCCAGGTAATTA+AGG - chr3.1:54344802-54344821 None:intergenic 25.0%
! AAGGTACAAAAGATATACAA+AGG - chr3.1:54345340-54345359 None:intergenic 25.0%
! AATTAAGTAGTAAGCTAAGA+AGG + chr3.1:54344190-54344209 MS.gene008318:intron 25.0%
! AATTTCTTGTGTTGAAATTG+TGG + chr3.1:54344443-54344462 MS.gene008318:intron 25.0%
! ACATTTCCAAATACAACATA+TGG - chr3.1:54345952-54345971 None:intergenic 25.0%
! ACTTTCCCTCAAAAAAAAAA+AGG - chr3.1:54346156-54346175 None:intergenic 25.0%
! AGAATTATGAGGTTCATAAT+TGG - chr3.1:54342903-54342922 None:intergenic 25.0%
! CACATGAATCACATAAATTA+TGG + chr3.1:54343136-54343155 MS.gene008318:CDS 25.0%
! CATGTATAGTTGTAATACAT+AGG + chr3.1:54346703-54346722 MS.gene008318:intron 25.0%
! CCATTAATGAATTTCAATTC+AGG + chr3.1:54347613-54347632 MS.gene008318:intron 25.0%
! CCTGAATTGAAATTCATTAA+TGG - chr3.1:54347616-54347635 None:intergenic 25.0%
! GAAATATATTCGAGTGTAAT+TGG + chr3.1:54346626-54346645 MS.gene008318:intron 25.0%
! GACTAATTAAGGGAAAAAAA+TGG - chr3.1:54344598-54344617 None:intergenic 25.0%
! GAGAAAAATGTTTACTTTCA+TGG - chr3.1:54343666-54343685 None:intergenic 25.0%
! GCCTTGAAATTTGTAATATT+AGG - chr3.1:54345515-54345534 None:intergenic 25.0%
! GTCTAACGTTTGTAATTTAA+GGG - chr3.1:54347270-54347289 None:intergenic 25.0%
! TAAAATTTGCATTAATCACG+AGG - chr3.1:54344363-54344382 None:intergenic 25.0%
! TAATTCTTCAAGAACAACTT+TGG + chr3.1:54342916-54342935 MS.gene008318:CDS 25.0%
! TATAGTGTTACACTTCATAT+TGG + chr3.1:54345733-54345752 MS.gene008318:intron 25.0%
! TCAAGATCCATATCAATATT+CGG - chr3.1:54345556-54345575 None:intergenic 25.0%
! TCTCATTAAGTAAACATTAG+TGG + chr3.1:54346562-54346581 MS.gene008318:intron 25.0%
! TGTCTAACGTTTGTAATTTA+AGG - chr3.1:54347271-54347290 None:intergenic 25.0%
! TTTGGCTAATGTAATTTAGA+TGG + chr3.1:54343959-54343978 MS.gene008318:intron 25.0%
!! ACTTAACCTTTACGATTTTT+AGG - chr3.1:54347728-54347747 None:intergenic 25.0%
!! AGATTGATTTAGATTCAAAG+AGG + chr3.1:54346076-54346095 MS.gene008318:intron 25.0%
!! CATTTTCCTAAAAATCGTAA+AGG + chr3.1:54347719-54347738 MS.gene008318:intron 25.0%
!! GATAAGTTGACAATATAATC+TGG + chr3.1:54345782-54345801 MS.gene008318:intron 25.0%
!! GATTGATTTAGATTCAAAGA+GGG + chr3.1:54346077-54346096 MS.gene008318:intron 25.0%
!! GGTGTTATATTATAGGTATT+TGG + chr3.1:54343941-54343960 MS.gene008318:intron 25.0%
!! TATATATGTGAACACTTTTG+AGG + chr3.1:54344741-54344760 MS.gene008318:intron 25.0%
!! TGTCAACTTATCAACTATTT+TGG - chr3.1:54345774-54345793 None:intergenic 25.0%
!!! AAAGAAGAATTAGAAGTACT+TGG - chr3.1:54342860-54342879 None:intergenic 25.0%
!!! CATTTTAGTTTATCATTTCG+GGG + chr3.1:54347379-54347398 MS.gene008318:intron 25.0%
!!! CTTGTTGGTTTTGATAATAA+GGG - chr3.1:54343036-54343055 None:intergenic 25.0%
!!! CTTTACGATTTTTAGGAAAA+TGG - chr3.1:54347721-54347740 None:intergenic 25.0%
!!! TATTTACTTTTGCTTTTGCA+TGG + chr3.1:54345186-54345205 MS.gene008318:intron 25.0%
!!! TTTTAGGAAAATGGTCAATA+TGG - chr3.1:54347712-54347731 None:intergenic 25.0%
!!! TTTTGATAATAAGGGTTATG+TGG - chr3.1:54343028-54343047 None:intergenic 25.0%
AAAATTCCACCTTAATTACC+TGG + chr3.1:54344790-54344809 MS.gene008318:intron 30.0%
AAGAATAAAAAGGGTTCTTG+TGG + chr3.1:54345265-54345284 MS.gene008318:intron 30.0%
AAGGCTCATAATAGTAAGTT+TGG + chr3.1:54346604-54346623 MS.gene008318:intron 30.0%
AATGACAGACAGTAGTTAAT+AGG - chr3.1:54346437-54346456 None:intergenic 30.0%
AATTTAAACTTAGGTGCAAG+AGG - chr3.1:54346113-54346132 None:intergenic 30.0%
ATACAATACATACCTGCAAA+TGG - chr3.1:54344062-54344081 None:intergenic 30.0%
ATGAAGGATTGTTGCATTAT+TGG - chr3.1:54344315-54344334 None:intergenic 30.0%
ATTTAAACTTAGGTGCAAGA+GGG - chr3.1:54346112-54346131 None:intergenic 30.0%
CAAGATCCATATCAATATTC+GGG - chr3.1:54345555-54345574 None:intergenic 30.0%
CATTAAGTAAACATTAGTGG+TGG + chr3.1:54346565-54346584 MS.gene008318:intron 30.0%
CTAATGATTGTTTCCATTAC+AGG + chr3.1:54347926-54347945 MS.gene008318:intron 30.0%
GATTACTATAAAGGTAGAAC+TGG - chr3.1:54346328-54346347 None:intergenic 30.0%
GCTAATAAGGTTGTAAATGA+AGG - chr3.1:54344331-54344350 None:intergenic 30.0%
GGATATTGATGAGATTTGAA+AGG - chr3.1:54343457-54343476 None:intergenic 30.0%
GTCCAACATTCATAACTTAA+GGG + chr3.1:54347442-54347461 MS.gene008318:intron 30.0%
GTTGTTCTTGAAGAATTATG+AGG - chr3.1:54342914-54342933 None:intergenic 30.0%
TAGTTGTAATACATAGGCTT+AGG + chr3.1:54346709-54346728 MS.gene008318:intron 30.0%
TCATAACCCGAATATTGATA+TGG + chr3.1:54345546-54345565 MS.gene008318:intron 30.0%
TGGTGATATAAACACATCTT+TGG - chr3.1:54343286-54343305 None:intergenic 30.0%
TGTACAAGTTTGTAGCTTAA+GGG + chr3.1:54347495-54347514 MS.gene008318:intron 30.0%
TGTCCAACATTCATAACTTA+AGG + chr3.1:54347441-54347460 MS.gene008318:intron 30.0%
TTATGAGGTTCATAATTGGA+TGG - chr3.1:54342899-54342918 None:intergenic 30.0%
TTGCACAAATCAAGAAATAG+TGG + chr3.1:54345682-54345701 MS.gene008318:intron 30.0%
TTGTACAAGTTTGTAGCTTA+AGG + chr3.1:54347494-54347513 MS.gene008318:intron 30.0%
! ACCTCTAAAAAATAGTCTAC+AGG + chr3.1:54345901-54345920 MS.gene008318:intron 30.0%
! GGTCCATATTAGAATTTGTT+AGG - chr3.1:54345884-54345903 None:intergenic 30.0%
! GTCAATTTTCAGATCAAAGA+GGG + chr3.1:54344981-54345000 MS.gene008318:CDS 30.0%
! TAATCCATATCTTGCTGTAT+TGG - chr3.1:54345019-54345038 None:intergenic 30.0%
! TACAAGCTAGTTTCTTAAGT+TGG - chr3.1:54347479-54347498 None:intergenic 30.0%
! TCTTTTGTACCTTAGTGATT+TGG + chr3.1:54345347-54345366 MS.gene008318:intron 30.0%
! TTTTTCTCTTGAATGTTCCA+TGG - chr3.1:54343260-54343279 None:intergenic 30.0%
!! CTTCATAAAAAAGAGTGTTG+TGG - chr3.1:54345248-54345267 None:intergenic 30.0%
!! TTGGGTTTTATGTAATCTAC+AGG - chr3.1:54345587-54345606 None:intergenic 30.0%
!!! ACCTGTAGACTATTTTTTAG+AGG - chr3.1:54345905-54345924 None:intergenic 30.0%
!!! CTTGGAAGAAATTTTAGTTG+TGG + chr3.1:54342968-54342987 MS.gene008318:CDS 30.0%
!!! GCTTGTTGGTTTTGATAATA+AGG - chr3.1:54343037-54343056 None:intergenic 30.0%
AAGGGTTAAGACCAATCAAA+GGG + chr3.1:54343194-54343213 MS.gene008318:CDS 35.0%
AATGAACGGTTATGATAGAC+TGG - chr3.1:54343223-54343242 None:intergenic 35.0%
ACTGGAGTTTAAAAACGACA+TGG - chr3.1:54343386-54343405 None:intergenic 35.0%
AGAATTACTCCATAGAGTGT+TGG - chr3.1:54345050-54345069 None:intergenic 35.0%
AGGCATGTCTTTCTCTTATT+AGG + chr3.1:54346368-54346387 MS.gene008318:intron 35.0%
AGGTTCGTTATTAAACCTTG+TGG - chr3.1:54343437-54343456 None:intergenic 35.0%
ATAATTGGAGATGCTCTTGA+TGG - chr3.1:54346759-54346778 None:intergenic 35.0%
ATAGCCAATGAAGAAGAAAG+TGG + chr3.1:54344123-54344142 MS.gene008318:intron 35.0%
ATCATCATCACTCACACTAT+GGG + chr3.1:54343491-54343510 MS.gene008318:CDS 35.0%
ATTTGATGTCCTCCTGATAT+TGG - chr3.1:54347093-54347112 None:intergenic 35.0%
CAAAAACCTTGATCTCATCA+TGG - chr3.1:54343545-54343564 None:intergenic 35.0%
CAAAACAGTTCATGCATGTT+TGG + chr3.1:54346914-54346933 MS.gene008318:intron 35.0%
CAAACATACACACAAGTCAA+AGG - chr3.1:54345489-54345508 None:intergenic 35.0%
CAGTGAATGAATGAATGTGT+GGG + chr3.1:54344148-54344167 MS.gene008318:intron 35.0%
CTCTATGGAGTAATTCTTCA+AGG + chr3.1:54345053-54345072 MS.gene008318:CDS 35.0%
CTGGAGTTTAAAAACGACAT+GGG - chr3.1:54343385-54343404 None:intergenic 35.0%
CTTATGTGAAGAGAAAGATC+AGG - chr3.1:54342833-54342852 None:intergenic 35.0%
GTAATACATAGGCTTAGGAT+TGG + chr3.1:54346714-54346733 MS.gene008318:intron 35.0%
GTCCCTTAAGTTATGAATGT+TGG - chr3.1:54347447-54347466 None:intergenic 35.0%
GTTATTAAACCTTGTGGCTA+CGG - chr3.1:54343431-54343450 None:intergenic 35.0%
TAAGTAAACATTAGTGGTGG+TGG + chr3.1:54346568-54346587 MS.gene008318:intron 35.0%
TAATCGAATGCTCATTCGTT+AGG + chr3.1:54345411-54345430 MS.gene008318:intron 35.0%
TAGACCAATACAGCAAGATA+TGG + chr3.1:54345012-54345031 MS.gene008318:CDS 35.0%
TCAATGAAAATCCCTTCCAA+GGG - chr3.1:54342785-54342804 None:intergenic 35.0%
TCATGTAAAAAGCCATTTGC+AGG + chr3.1:54344047-54344066 MS.gene008318:CDS 35.0%
TGCTCATTCGTTAGGATAAA+TGG + chr3.1:54345419-54345438 MS.gene008318:intron 35.0%
TGTCATCAACATCATCAGAA+GGG + chr3.1:54343176-54343195 MS.gene008318:CDS 35.0%
TTACTATTATGAGCCTTGCA+TGG - chr3.1:54346601-54346620 None:intergenic 35.0%
TTCAATGAAAATCCCTTCCA+AGG - chr3.1:54342786-54342805 None:intergenic 35.0%
TTGTTGTGATGTTGAAAGTG+AGG - chr3.1:54343067-54343086 None:intergenic 35.0%
TTTAAGCCAGGTAATTAAGG+TGG - chr3.1:54344799-54344818 None:intergenic 35.0%
TTTGAATCACACTCCTGTAA+TGG - chr3.1:54347942-54347961 None:intergenic 35.0%
! AAAGTCAGTATTGGAACTGA+TGG + chr3.1:54344002-54344021 MS.gene008318:CDS 35.0%
! CGTCAATTTTCAGATCAAAG+AGG + chr3.1:54344980-54344999 MS.gene008318:CDS 35.0%
! CTTCTTTTTGTCGGCAATTT+AGG - chr3.1:54343568-54343587 None:intergenic 35.0%
! TTTGTACCTTAGTGATTTGG+TGG + chr3.1:54345350-54345369 MS.gene008318:intron 35.0%
!! ATCAGTTCCAATACTGACTT+TGG - chr3.1:54344003-54344022 None:intergenic 35.0%
!! GAAGAATTAGAAGTACTTGG+TGG - chr3.1:54342857-54342876 None:intergenic 35.0%
!! GAGGTTGATGTTTGCTAATA+AGG - chr3.1:54344344-54344363 None:intergenic 35.0%
!! GGTGTTGTTGATGTTGAAAT+TGG - chr3.1:54342809-54342828 None:intergenic 35.0%
!! TCAAGAGCATCTCCAATTAT+TGG + chr3.1:54346759-54346778 MS.gene008318:intron 35.0%
!! TGCATGAACTGTTTTGTTGA+TGG - chr3.1:54346910-54346929 None:intergenic 35.0%
!!! ATGTCGTTTTTAAACTCCAG+TGG + chr3.1:54343385-54343404 MS.gene008318:CDS 35.0%
AAGCATCCATGATGAGATCA+AGG + chr3.1:54343536-54343555 MS.gene008318:CDS 40.0%
AATGAATGAATGTGTGGGAG+TGG + chr3.1:54344153-54344172 MS.gene008318:intron 40.0%
ACAAGTCCAAACGACATAGA+TGG + chr3.1:54347039-54347058 MS.gene008318:CDS 40.0%
ACCAATCCACCAAATCACTA+AGG - chr3.1:54345359-54345378 None:intergenic 40.0%
AGCAACACCAAAGTCAGTAT+TGG + chr3.1:54343993-54344012 MS.gene008318:CDS 40.0%
AGTGAGGAAAATGAGCTTGT+TGG - chr3.1:54343051-54343070 None:intergenic 40.0%
ATACCAGATTGGAATGGCAA+AGG + chr3.1:54348032-54348051 MS.gene008318:CDS 40.0%
ATCAGGAGGACATCAAATTC+AGG + chr3.1:54347095-54347114 MS.gene008318:CDS 40.0%
ATGTGAAGAGAAAGATCAGG+TGG - chr3.1:54342830-54342849 None:intergenic 40.0%
ATGTTCCATGGCTGGTAAAA+AGG - chr3.1:54343248-54343267 None:intergenic 40.0%
CAATCACAACCAATATCAGG+AGG + chr3.1:54347081-54347100 MS.gene008318:CDS 40.0%
CAGCATGAACAAATCTAGCA+TGG - chr3.1:54343627-54343646 None:intergenic 40.0%
CAGCTCAAGAACAATTTGTC+AGG + chr3.1:54347963-54347982 MS.gene008318:CDS 40.0%
CATCATCATCACTCACACTA+TGG + chr3.1:54343490-54343509 MS.gene008318:CDS 40.0%
CTAATGTGAACTCCAAGCTT+GGG - chr3.1:54348010-54348029 None:intergenic 40.0%
CTGAAACCATCTATGTCGTT+TGG - chr3.1:54347048-54347067 None:intergenic 40.0%
CTGGTAAAAAGGGGAATGAA+CGG - chr3.1:54343237-54343256 None:intergenic 40.0%
CTTGTGAGAGTGAGACTATT+AGG + chr3.1:54343863-54343882 MS.gene008318:intron 40.0%
GAAGGGTTAAGACCAATCAA+AGG + chr3.1:54343193-54343212 MS.gene008318:CDS 40.0%
GCAGTGAATGAATGAATGTG+TGG + chr3.1:54344147-54344166 MS.gene008318:intron 40.0%
GTGTCATCAACATCATCAGA+AGG + chr3.1:54343175-54343194 MS.gene008318:CDS 40.0%
TAGACTGGAATCCCTTTGAT+TGG - chr3.1:54343208-54343227 None:intergenic 40.0%
TCACATTAGGCATACCAGAT+TGG + chr3.1:54348021-54348040 MS.gene008318:CDS 40.0%
TGAGAGTGAGACTATTAGGT+GGG + chr3.1:54343867-54343886 MS.gene008318:intron 40.0%
TGATCAGTAGTAGAGAACCA+TGG + chr3.1:54347010-54347029 MS.gene008318:intron 40.0%
TGCACCACTTTCTTCTTCAT+TGG - chr3.1:54344130-54344149 None:intergenic 40.0%
TGTTCCATGGCTGGTAAAAA+GGG - chr3.1:54343247-54343266 None:intergenic 40.0%
TTAGGCATACCAGATTGGAA+TGG + chr3.1:54348026-54348045 MS.gene008318:CDS 40.0%
! AGTGTGAGTGATGATGATGA+TGG - chr3.1:54343489-54343508 None:intergenic 40.0%
! ATGTCGTTTGGACTTGTTTG+TGG - chr3.1:54347036-54347055 None:intergenic 40.0%
! ATTGGAACTGATGGATGTGA+AGG + chr3.1:54344011-54344030 MS.gene008318:CDS 40.0%
! CTCCTGATATTGGTTGTGAT+TGG - chr3.1:54347083-54347102 None:intergenic 40.0%
! GCTCTCATGCTTCTTTTTGT+CGG - chr3.1:54343577-54343596 None:intergenic 40.0%
! GGTTGTTGTTGATGTTGTTG+TGG - chr3.1:54343007-54343026 None:intergenic 40.0%
!! AAAAAAGAGTGTTGTGGACG+TGG - chr3.1:54345242-54345261 None:intergenic 40.0%
!! AAAAAGAGTGTTGTGGACGT+GGG - chr3.1:54345241-54345260 None:intergenic 40.0%
!! ACCTTAGTGATTTGGTGGAT+TGG + chr3.1:54345355-54345374 MS.gene008318:intron 40.0%
!! AGGCTTAGGATTGGTTTAAG+TGG + chr3.1:54346723-54346742 MS.gene008318:intron 40.0%
!! ATTACTCCATAGAGTGTTGG+TGG - chr3.1:54345047-54345066 None:intergenic 40.0%
ACCACAAGGATTTCACCACA+TGG - chr3.1:54346026-54346045 None:intergenic 45.0%
ACCATGTGGTGAAATCCTTG+TGG + chr3.1:54346022-54346041 MS.gene008318:intron 45.0%
ACGGAGTTGAATTAGGCATG+TGG - chr3.1:54343306-54343325 None:intergenic 45.0%
ACTCATCCACCAACACTCTA+TGG + chr3.1:54345038-54345057 MS.gene008318:CDS 45.0%
AGAGGTGAAGATGACGAAGA+AGG - chr3.1:54343331-54343350 None:intergenic 45.0%
AGAGTGTAAGAACCCAAGCT+TGG + chr3.1:54347995-54348014 MS.gene008318:CDS 45.0%
ATCAGAGACTGTGTCATGTC+TGG - chr3.1:54344237-54344256 None:intergenic 45.0%
ATTAAACCTTGTGGCTACGG+CGG - chr3.1:54343428-54343447 None:intergenic 45.0%
CCAAGCTTGGAGTTCACATT+AGG + chr3.1:54348008-54348027 MS.gene008318:CDS 45.0%
CCACAAATTGGAAGCAATGG+TGG + chr3.1:54344953-54344972 MS.gene008318:CDS 45.0%
CCACCATTGCTTCCAATTTG+TGG - chr3.1:54344956-54344975 None:intergenic 45.0%
CCTAATGTGAACTCCAAGCT+TGG - chr3.1:54348011-54348030 None:intergenic 45.0%
GAAGATGACGAAGAAGGAGA+CGG - chr3.1:54343325-54343344 None:intergenic 45.0%
GAAGGAGACGGAGTTGAATT+AGG - chr3.1:54343313-54343332 None:intergenic 45.0%
GAATTACCTGAAGAAGCTGC+AGG - chr3.1:54344557-54344576 None:intergenic 45.0%
GAGGATGATGTGCCACAAAT+TGG + chr3.1:54344941-54344960 MS.gene008318:CDS 45.0%
GATGGAAAATCACGACCACA+AGG - chr3.1:54346040-54346059 None:intergenic 45.0%
GCTCACACTGAACTATCTCT+TGG + chr3.1:54342950-54342969 MS.gene008318:CDS 45.0%
GTACTTGTCCATCGCATTCT+TGG - chr3.1:54343601-54343620 None:intergenic 45.0%
GTGAGAGTGAGACTATTAGG+TGG + chr3.1:54343866-54343885 MS.gene008318:intron 45.0%
GTGCCACAAATTGGAAGCAA+TGG + chr3.1:54344950-54344969 MS.gene008318:CDS 45.0%
GTTCATGCTGTTGAGCTTCT+TGG + chr3.1:54343637-54343656 MS.gene008318:CDS 45.0%
GTTCCATGGCTGGTAAAAAG+GGG - chr3.1:54343246-54343265 None:intergenic 45.0%
TCTCTTGAATGTTCCATGGC+TGG - chr3.1:54343256-54343275 None:intergenic 45.0%
TGTCCTTTGCCATTCCAATC+TGG - chr3.1:54348038-54348057 None:intergenic 45.0%
TTAGGCCTTTCAGATGGATC+TGG + chr3.1:54344917-54344936 MS.gene008318:intron 45.0%
! ATTCCCCTTTTTACCAGCCA+TGG + chr3.1:54343240-54343259 MS.gene008318:CDS 45.0%
! GTTGGATTAGGCCTTTCAGA+TGG + chr3.1:54344911-54344930 MS.gene008318:intron 45.0%
! TTTAAACTCCAGTGGCTCTG+CGG + chr3.1:54343393-54343412 MS.gene008318:CDS 45.0%
! TTTGGACTTGTTTGTGGCCA+TGG - chr3.1:54347030-54347049 None:intergenic 45.0%
!! GTAAACATTAGTGGTGGTGG+AGG + chr3.1:54346571-54346590 MS.gene008318:intron 45.0%
!! GTGAGTGATGATGATGATGG+TGG - chr3.1:54343486-54343505 None:intergenic 45.0%
!! TGATGATGATGGTGGTGCAA+TGG - chr3.1:54343478-54343497 None:intergenic 45.0%
!!! AAAAAAATTGTATTTAATTT+AGG + chr3.1:54347166-54347185 MS.gene008318:intron 5.0%
!!! ATTAAATACAATTTTTTTTT+TGG - chr3.1:54347164-54347183 None:intergenic 5.0%
AAACCCCCTGCAGCTATGTA+GGG - chr3.1:54343358-54343377 None:intergenic 50.0%
CATGCTGTTGAGCTTCTTGG+TGG + chr3.1:54343640-54343659 MS.gene008318:CDS 50.0%
CCTCTCCAGATCCATCTGAA+AGG - chr3.1:54344925-54344944 None:intergenic 50.0%
CCTTTCAGATGGATCTGGAG+AGG + chr3.1:54344922-54344941 MS.gene008318:CDS 50.0%
GACAAACCTGCAGCTTCTTC+AGG + chr3.1:54344548-54344567 MS.gene008318:CDS 50.0%
TAAACCCCCTGCAGCTATGT+AGG - chr3.1:54343359-54343378 None:intergenic 50.0%
TTTCCCCCTACATAGCTGCA+GGG + chr3.1:54343350-54343369 MS.gene008318:CDS 50.0%
! CACTCACACTATGGGAGTGT+TGG + chr3.1:54343499-54343518 MS.gene008318:CDS 50.0%
!! CACTATGGGAGTGTTGGACT+TGG + chr3.1:54343505-54343524 MS.gene008318:CDS 50.0%
!! TGAGAGCACCAAGAATGCGA+TGG + chr3.1:54343590-54343609 MS.gene008318:CDS 50.0%
AACCCCCTGCAGCTATGTAG+GGG - chr3.1:54343357-54343376 None:intergenic 55.0%
CTTTCCCCCTACATAGCTGC+AGG + chr3.1:54343349-54343368 MS.gene008318:CDS 55.0%
GCAGCTATGTAGGGGGAAAG+AGG - chr3.1:54343349-54343368 None:intergenic 55.0%
TCTATAAGCCGCAGAGCCAC+TGG - chr3.1:54343404-54343423 None:intergenic 55.0%
TGGTGGAGGCTTACCATGCA+AGG + chr3.1:54346585-54346604 MS.gene008318:intron 55.0%
TTCCCCCTACATAGCTGCAG+GGG + chr3.1:54343351-54343370 MS.gene008318:CDS 55.0%
ACCCCCTGCAGCTATGTAGG+GGG - chr3.1:54343356-54343375 None:intergenic 60.0%
ATAGAGCCGCCGTAGCCACA+AGG + chr3.1:54343419-54343438 MS.gene008318:CDS 60.0%
TCCCCCTACATAGCTGCAGG+GGG + chr3.1:54343352-54343371 MS.gene008318:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 54342779 54348064 54342779 ID=MS.gene008318
chr3.1 mRNA 54342779 54348064 54342779 ID=MS.gene008318.t1;Parent=MS.gene008318
chr3.1 exon 54342779 54343670 54342779 ID=MS.gene008318.t1.exon1;Parent=MS.gene008318.t1
chr3.1 CDS 54342779 54343670 54342779 ID=cds.MS.gene008318.t1;Parent=MS.gene008318.t1
chr3.1 exon 54343992 54344068 54343992 ID=MS.gene008318.t1.exon2;Parent=MS.gene008318.t1
chr3.1 CDS 54343992 54344068 54343992 ID=cds.MS.gene008318.t1;Parent=MS.gene008318.t1
chr3.1 exon 54344524 54344569 54344524 ID=MS.gene008318.t1.exon3;Parent=MS.gene008318.t1
chr3.1 CDS 54344524 54344569 54344524 ID=cds.MS.gene008318.t1;Parent=MS.gene008318.t1
chr3.1 exon 54344921 54345074 54344921 ID=MS.gene008318.t1.exon4;Parent=MS.gene008318.t1
chr3.1 CDS 54344921 54345074 54344921 ID=cds.MS.gene008318.t1;Parent=MS.gene008318.t1
chr3.1 exon 54347017 54347116 54347017 ID=MS.gene008318.t1.exon5;Parent=MS.gene008318.t1
chr3.1 CDS 54347017 54347116 54347017 ID=cds.MS.gene008318.t1;Parent=MS.gene008318.t1
chr3.1 exon 54347948 54348064 54347948 ID=MS.gene008318.t1.exon6;Parent=MS.gene008318.t1
chr3.1 CDS 54347948 54348064 54347948 ID=cds.MS.gene008318.t1;Parent=MS.gene008318.t1
Gene Sequence

>MS.gene008318

ATGCCCTTGGAAGGGATTTTCATTGAACCAATTTCAACATCAACAACACCACCTGATCTTTCTCTTCACATAAGTCCACCAAGTACTTCTAATTCTTCTTTGATTAACACAACTCAACCATCCAATTATGAACCTCATAATTCTTCAAGAACAACTTTGGCTCAAGCTCAAGCTCACACTGAACTATCTCTTGGAAGAAATTTTAGTTGTGGTGCTCAAGAACAACCACAACAACATCAACAACAACCACATAACCCTTATTATCAAAACCAACAAGCTCATTTTCCTCACTTTCAACATCACAACAATCACAGCTCTACAACAACAACAACAAGTACTACAACAAATTCTTCAAGTCACATGAATCACATAAATTATGGTGTTTCATTGCTTGATGTGTCATCAACATCATCAGAAGGGTTAAGACCAATCAAAGGGATTCCAGTCTATCATAACCGTTCATTCCCCTTTTTACCAGCCATGGAACATTCAAGAGAAAAAGATCCAAAGATGTGTTTATATCACCACATGCCTAATTCAACTCCGTCTCCTTCTTCGTCATCTTCACCTCTTTCCCCCTACATAGCTGCAGGGGGTTTAGATCCCATGTCGTTTTTAAACTCCAGTGGCTCTGCGGCTTATAGAGCCGCCGTAGCCACAAGGTTTAATAACGAACCTTTCAAATCTCATCAATATCCATTGCACCACCATCATCATCATCACTCACACTATGGGAGTGTTGGACTTGGTAGCTCAGAAGCATCCATGATGAGATCAAGGTTTTTGCCTAAATTGCCGACAAAAAGAAGCATGAGAGCACCAAGAATGCGATGGACAAGTACACTCCATGCTAGATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGTAAACATTTTTCTCTTCCACTTTAATTTTCTTCTTTTAAATTTTTTGGATACGGTAATATTAATGACCATTTTACAACTGTATTAGATTTGATCTTCGTCTTTTGAGATTACAAAATATTTATCATATTTTTTATAAAAGTAATTAATTTTTTTCTTAAATAATAAAAGAAAGAGTGTTGTTTACTTGTTACTTGTGAGAGTGAGACTATTAGGTGGGTATTATGTTAAATATTTAGTTTTTAATTTTATTGTTGTTGTTATTATGTTTGGTGTTATATTATAGGTATTTGGCTAATGTAATTTAGATGGTGAATTTTAGGAGCAACACCAAAGTCAGTATTGGAACTGATGGATGTGAAGGATCTCACATTAGCTCATGTAAAAAGCCATTTGCAGGTATGTATTGTATGCATCTATCTACTATATGAAATTGAAATGAAATTGGGCACAATAGCCAATGAAGAAGAAAGTGGTGCAGTGAATGAATGAATGTGTGGGAGTGGATAGTAGTAGTAGTAATTAAGTAGTAAGCTAAGAAGGAGACTTTATCATCTGAGACGACCAGACATGACACAGTCTCTGATTATAGTCATAGAAAGAGAGAGAAAACTGACAACAACAAATAAAAGTCATCATTTTCCAATAATGCAACAATCCTTCATTTACAACCTTATTAGCAAACATCAACCTCGTGATTAATGCAAATTTTATACAGTATATTTTTATATATCTTATTATACAAATAGGTTTATTTTTTATATTTTCATACTAATTTCTTGTGTTGAAATTGTGGAAGTATCTTTGTAATTAGTATAAAATGTTTGTTTTGTTTTGTGATTTGTTCTTCACAGATGTATCGAACTGTTAAGACAACTGACAAACCTGCAGCTTCTTCAGGTAATTCGTATTGCTCAATCTTCAACCATTTTTTTCCCTTAATTAGTCTAATAATTACGGATGTATTAATTTCTCTTGTTTTTATAGAGAATGTCATCACTTGTGAGTTGTGACTTACTACCTTATTCTTTTCACATTTTTTTTTACTGTTATTTTTCTACCTTTAAAGTCTATATATGTGAACACTTTTGAGGCTTTTTGCCTCTTAAACATATATATAAAAATTCCACCTTAATTACCTGGCTTAAATTTTTTATATATAAAATTATGAAGCAAGATGTGTGCATGCATGTACTTTACATTAATTAATAAATTTATTTTTGGAGTAATTATAAATTAATGTTGGATTAGGCCTTTCAGATGGATCTGGAGAGGATGATGTGCCACAAATTGGAAGCAATGGTGGAATTCGTCAATTTTCAGATCAAAGAGGGCTAACAGATAGACCAATACAGCAAGATATGGATTACTCATCCACCAACACTCTATGGAGTAATTCTTCAAGGTAACATTATTTTTCAATGTTACTATTTTTCTAAATTTTGAAGTACATATGTTTTATGTGCTTATATAGATGTACATATTTAATTATTTTTTTTTTGTCACCGACTTTGTTTATTTACTTTTGCTTTTGCATGGAGTATCTCTTGTATAAAAATCAATGCAAACCCACGTCCACAACACTCTTTTTTATGAAGAATAAAAAGGGTTCTTGTGGCAGCTTTTGCTTTAAACTTGTGTGTTTCATTTTCTTCTTTCTTTTCTTTCCTTTGTATATCTTTTGTACCTTAGTGATTTGGTGGATTGGTGAATTCATATAACAAAAGAATGCTACAAGACATAATCGAATGCTCATTCGTTAGGATAAATGGAAAGCAACACAAAGCTTCAGTAATTTGCTTTTTTTTTTCTTCTTCCTTTGACTTGTGTGTATGTTTGTCTCCTAATATTACAAATTTCAAGGCTAATTATTTGATCATAACCCGAATATTGATATGGATCTTGATTTCTGCACCTGTAGATTACATAAAACCCAAATTAAGTCCTTCATATATTGACTATGTATTCTTCCAAGTAACATTAACAATTTATATATGTTTTTTAAAGTTGGTTTGCACAAATCAAGAAATAGTGGTAACTAAATACCATAAACAGATTTCAATTATAGTGTTACACTTCATATTGGCTCACTCTAGTAAGTCCAAAATAGTTGATAAGTTGACAATATAATCTGGAAAAAGAAAATATAGTAAATGTAACATATAAATTTATAAATGGTACATAAACAAAAATATATTTTTCATTATAAAACCTAACAAATTCTAATATGGACCTCTAAAAAATAGTCTACAGGTAAATGTGCATCCATGAAATTATTACCATATGTTGTATTTGGAAATGTGCACCCTTTACTTAAATTTCCACTTAAATTACACGAATTATATTAGAATAACCATGTGGTGAAATCCTTGTGGTCGTGATTTTCCATCAAAAAATAAAAGCAAAAGATTGATTTAGATTCAAAGAGGGTTAACTTGACCCTCTTGCACCTAAGTTTAAATTAATTTGAAGTAGCCTATACACCTTTTTTTTTTTGAGGGAAAGTAGCCTATAAACCTTCTTTATTTTGTTTTTGATAAACAAATCTTGATTTAAGTTTTTGTCTTTGAGCTACTTTATGTAAAAATCTTACTTACAGTTAACTATTTTGATGTTGACACTCGACATTCTCTGCAATAATCTAAATTCATATGTCCAGTTCTACCTTTATAGTAATCAAGATATTTTAAAAATTGAGAGGCATGTCTTTCTCTTATTAGGTAATATCTTGATATAAATATATATTAAAACTTATACAGTAACACCTATTAACTACTGTCTGTCATTTTTAGTCTAAAAAAAAAAAATCTACTGTTTGTCATGATTAAAAAAACATTACCTTAAGTAAACATGAAATATCTCATTGTGACACAAACAAATTATCACTACAATTCTCATTAAGTAAACATTAGTGGTGGTGGAGGCTTACCATGCAAGGCTCATAATAGTAAGTTTGGAAATATATTCGAGTGTAATTGGCATTTTAGCATGTGACTTGCCTATCAATATATCATATACTTGAATCAGTGCTTACATGTATAGTTGTAATACATAGGCTTAGGATTGGTTTAAGTGGTACATTTAATCCATCAAGAGCATCTCCAATTATTGGAAAAATAATATTCTACATTGGAAAAGTGATAAAGACTGAAAAAAGTTTATAAATTCTGGAGTGTGATCGTACTTGAATTGTATCTATACTAAAGACATAGATGTATAGTGAAGTTTTGCACACTGCCATCAACAAAACAGTTCATGCATGTTTGGTATACATAAAGAATCCATTGAACTGATGCAATTTTTTTTTTCTTGGTTGTGTCATTTCATCTTAATTAAATTATGATCAGTAGTAGAGAACCATGGCCACAAACAAGTCCAAACGACATAGATGGTTTCAGACCAACTATCTTCCAATCACAACCAATATCAGGAGGACATCAAATTCAGGTATAACTAATGAGTTTAATATATTTGTTATCATTAATTTGTAACCAAAAAAAAAATTGTATTTAATTTAGGCTTAAATTATATTTTTAGTCCCTTAAATTAATTTTAGGTTTCACTTTAGTCTCTTAATTTTTTTTGTTTTATTTTGATCCCTTAAATTACAAACGTTAGACAATTTTGTTCCTTAAGTTTTTTTCGTTTCATTTTGGTTGCTTAACTAACAAATATTAGATAATTTGATATTTAAGTTACAAATTTTAGACATTTTAGTTTATCATTTCGGGGATCAAAATATCTTAATATTTGTAACTTAAGGAACAAAAATGTCCAACATTCATAACTTAAGGGACTAAAACGAACCAACTTAAGAAACTAGCTTGTACAAGTTTGTAGCTTAAGGGACCAAAATGAAATCTAAAATTAAATTAAAGGACTAAAAATATAATTTAGCATATAATTTATGTACATTTTCAATTAAGTTTTTTACACATACTATCCATTAATGAATTTCAATTCAGGTCGAATCGATTAAGAGTATTCGAGCTCGATCTTTAGTAGTGACTATTCTTAAACAAATTATTCTAGTTGAATTCCATATTGACCATTTTCCTAAAAATCGTAAAGGTTAAGTCCAAAAAAAAATGCTTTCAATTATGTATATATATATTGCTACATCATTTAATAAATATATCAAGTTATGTATTTTTAAATTTATTGAATGTTGTGACAACAGTAAATCTTATAGACTGTTTTAGCATGATGTTGCATACAAATTAGTTTTTATTTTTATTTTTATATTATCTCATTTACTAATGATTGTTTCCATTACAGGAGTGTGATTCAAATCAGCTCAAGAACAATTTGTCAGGATCTAATTTAGAGTGTAAGAACCCAAGCTTGGAGTTCACATTAGGCATACCAGATTGGAATGGCAAAGGACAAGCTTAA
Protein sequence

>MS.gene008318.t1

MPLEGIFIEPISTSTTPPDLSLHISPPSTSNSSLINTTQPSNYEPHNSSRTTLAQAQAHTELSLGRNFSCGAQEQPQQHQQQPHNPYYQNQQAHFPHFQHHNNHSSTTTTTSTTTNSSSHMNHINYGVSLLDVSSTSSEGLRPIKGIPVYHNRSFPFLPAMEHSREKDPKMCLYHHMPNSTPSPSSSSSPLSPYIAAGGLDPMSFLNSSGSAAYRAAVATRFNNEPFKSHQYPLHHHHHHHSHYGSVGLGSSEASMMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDVPQIGSNGGIRQFSDQRGLTDRPIQQDMDYSSTNTLWSNSSSSREPWPQTSPNDIDGFRPTIFQSQPISGGHQIQECDSNQLKNNLSGSNLECKNPSLEFTLGIPDWNGKGQA