AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene008327

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008327.t1 MTR_3g075190 82.874 508 30 10 1 471 1 488 0.0 813
MS.gene008327.t1 MTR_4g104260 47.858 537 183 18 17 471 25 546 3.33e-148 435
MS.gene008327.t1 MTR_7g079840 32.153 339 167 9 174 461 27 353 4.99e-46 165
MS.gene008327.t1 MTR_7g079840 32.153 339 167 9 174 461 17 343 5.57e-46 165
MS.gene008327.t1 MTR_5g085200 30.259 347 156 14 174 466 44 358 5.90e-38 143
MS.gene008327.t1 MTR_4g119280 30.792 341 165 13 171 460 85 405 5.36e-28 117
MS.gene008327.t1 MTR_4g119280 27.762 353 184 13 172 469 41 377 2.34e-22 100
MS.gene008327.t1 MTR_2g019740 28.977 352 172 14 172 459 42 379 2.04e-24 106
MS.gene008327.t1 MTR_8g446930 27.869 366 154 14 174 458 138 474 6.83e-24 104
MS.gene008327.t1 MTR_8g446930 30.128 312 170 10 171 458 37 324 1.21e-23 102
MS.gene008327.t1 MTR_8g446930 43.011 93 42 2 372 458 23 110 1.01e-13 72.8
MS.gene008327.t1 MTR_1g088875 27.660 329 158 12 167 436 39 346 4.58e-23 100
MS.gene008327.t1 MTR_1g088875 49.351 77 33 1 388 458 90 166 3.83e-15 77.0
MS.gene008327.t1 MTR_1g088875 27.607 326 156 12 167 433 39 343 6.03e-23 100
MS.gene008327.t1 MTR_1g088875 49.351 77 33 1 388 458 90 166 3.53e-15 77.0
MS.gene008327.t1 MTR_1g088875 27.607 326 156 12 167 433 39 343 6.47e-23 100
MS.gene008327.t1 MTR_1g088875 49.351 77 33 1 388 458 90 166 4.10e-15 77.0
MS.gene008327.t1 MTR_4g119280 27.762 353 184 13 172 469 41 377 1.80e-22 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008327.t1 AT3G48440 40.487 452 189 14 53 462 9 422 3.20e-98 303
MS.gene008327.t1 AT5G63260 49.691 324 122 7 174 466 98 411 6.23e-91 283
MS.gene008327.t1 AT5G63260 47.353 340 122 8 174 466 98 427 1.20e-86 273
MS.gene008327.t1 AT3G02830 34.848 330 156 10 174 461 17 329 1.54e-47 168
MS.gene008327.t1 AT3G02830 34.848 330 156 10 174 461 37 349 1.55e-47 169
MS.gene008327.t1 AT5G16540 34.810 316 142 10 174 461 39 318 7.76e-46 164
MS.gene008327.t1 AT5G16540 34.810 316 142 10 174 461 18 297 9.26e-46 163
MS.gene008327.t1 AT2G47850 32.945 343 173 12 152 460 18 337 9.04e-42 154
MS.gene008327.t1 AT3G06410 33.138 341 162 11 172 457 49 378 3.30e-41 153
MS.gene008327.t1 AT3G06410 44.444 81 37 2 389 461 97 177 4.79e-14 74.7
MS.gene008327.t1 AT5G18550 33.531 337 161 12 172 457 14 338 5.02e-41 152
MS.gene008327.t1 AT5G18550 45.000 80 36 2 388 459 61 140 4.96e-15 77.4
MS.gene008327.t1 AT5G18550 47.436 78 35 1 387 458 14 91 6.98e-15 77.0
MS.gene008327.t1 AT5G18550 33.531 337 161 12 172 457 46 370 5.63e-41 152
MS.gene008327.t1 AT5G18550 45.000 80 36 2 388 459 93 172 3.20e-15 78.2
MS.gene008327.t1 AT5G18550 47.436 78 35 1 387 458 46 123 4.70e-15 77.8
MS.gene008327.t1 AT5G18550 33.531 337 161 12 172 457 46 370 5.87e-41 152
MS.gene008327.t1 AT5G18550 45.000 80 36 2 388 459 93 172 3.79e-15 77.8
MS.gene008327.t1 AT5G18550 47.436 78 35 1 387 458 46 123 5.57e-15 77.4
MS.gene008327.t1 AT2G47850 31.436 369 170 13 152 460 18 363 8.42e-41 152
MS.gene008327.t1 AT2G47850 31.436 369 170 13 152 460 18 363 8.42e-41 152
MS.gene008327.t1 AT1G04990 31.805 349 176 14 151 466 21 340 3.52e-39 146
MS.gene008327.t1 AT1G04990 31.805 349 176 14 151 466 21 340 3.52e-39 146
MS.gene008327.t1 AT1G04990 31.805 349 176 14 151 466 21 340 3.52e-39 146
MS.gene008327.t1 AT5G16540 32.911 316 141 11 174 461 39 311 1.03e-38 144
MS.gene008327.t1 AT5G18550 31.157 337 156 12 172 457 46 357 5.31e-34 133
MS.gene008327.t1 AT5G18550 45.000 80 36 2 388 459 93 172 3.02e-15 78.2
MS.gene008327.t1 AT5G18550 47.436 78 35 1 387 458 46 123 4.28e-15 77.8
MS.gene008327.t1 AT2G32930 29.167 360 171 13 152 463 19 342 2.95e-33 131
MS.gene008327.t1 AT2G32930 29.226 349 163 13 163 463 3 315 1.87e-32 128
MS.gene008327.t1 AT2G32930 28.889 360 168 13 152 463 19 338 1.62e-31 126
MS.gene008327.t1 AT1G04990 29.912 341 173 14 151 466 21 320 3.68e-31 124
MS.gene008327.t1 AT5G16540 32.292 288 131 10 174 433 18 269 4.69e-30 118
MS.gene008327.t1 AT5G16540 45.455 77 36 1 388 458 62 138 1.03e-14 74.7
MS.gene008327.t1 AT1G48195 61.039 77 24 1 387 457 4 80 8.47e-28 106
MS.gene008327.t1 AT3G12680 30.056 356 158 14 140 458 198 499 1.38e-27 115
MS.gene008327.t1 AT3G12680 42.529 87 39 3 384 462 217 300 9.63e-13 70.5
MS.gene008327.t1 AT1G04990 30.627 271 135 12 230 466 8 259 2.00e-27 112
MS.gene008327.t1 AT2G47850 34.387 253 104 13 238 460 21 241 4.52e-25 106
MS.gene008327.t1 AT2G47850 36.667 90 49 1 172 261 162 243 4.32e-11 64.7
MS.gene008327.t1 AT1G04990 28.626 262 132 12 230 466 8 239 1.16e-19 89.7

Find 113 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATATGGAATTTGCAAATT+TGG 0.116818 3.1:+54174189 MS.gene008327:CDS
TCAGGTTCACCAGGTCTTTC+TGG 0.127881 3.1:-54173964 None:intergenic
AAGACTGGAACTTGCAAATT+TGG 0.144169 3.1:+54171539 MS.gene008327:CDS
GGCAGGAGAAAGAGATGAAT+TGG 0.309939 3.1:+54171842 MS.gene008327:CDS
TGTAATGAGTGCACACATTC+TGG 0.330211 3.1:-54174164 None:intergenic
TTTAAGAAGAAACTGCATTC+AGG 0.330498 3.1:-54173982 None:intergenic
TATGACTCCACTTCAGGATA+TGG 0.341082 3.1:+54172899 MS.gene008327:CDS
TCCATTCCAATCAGAACTTC+GGG 0.344770 3.1:-54173050 None:intergenic
ACCTGGTTTCTTCTCCAAAC+AGG 0.348538 3.1:-54171584 None:intergenic
TGCACTCATTACAACCGATA+TGG 0.357948 3.1:+54174174 MS.gene008327:CDS
AAAGAACAGTCTTCAGCTTC+AGG 0.362830 3.1:-54171509 None:intergenic
TCAAGAATCTCAATCACATT+TGG 0.365366 3.1:+54170957 MS.gene008327:CDS
CAAATTTGCAAATTCCATAT+CGG 0.369456 3.1:-54174188 None:intergenic
TGACAGTATTATTCAAGATC+TGG 0.369833 3.1:+54172554 MS.gene008327:intron
GGTGGGTATGACTCCACTTC+AGG 0.373700 3.1:+54172893 MS.gene008327:CDS
GCAAGTTTAATCACCCTGTT+TGG 0.377149 3.1:+54171570 MS.gene008327:CDS
TGATTGAAATCTGAGGGTTC+AGG 0.385823 3.1:-54171027 None:intergenic
TTCTGATTGGAATGGATATC+AGG 0.393291 3.1:+54173057 MS.gene008327:CDS
AAGGCAGACCCTTGTTACTT+AGG 0.402185 3.1:-54174065 None:intergenic
CCTTGGCCTACCTATTCGTT+TGG 0.402338 3.1:+54172658 MS.gene008327:CDS
TAAGCATTCATTTCCATAGC+TGG 0.402830 3.1:-54173904 None:intergenic
GTTGGTGGAATTGATGATAA+AGG 0.406722 3.1:+54171263 MS.gene008327:CDS
CTTCTCCCCGAAGTTCTGAT+TGG 0.413563 3.1:+54173044 MS.gene008327:CDS
GATAACGTCCAGGCATAGTT+GGG 0.415107 3.1:-54174251 None:intergenic
CTTTCTGGAAACTCTTCAAC+TGG 0.426995 3.1:-54173949 None:intergenic
GAGGATGGAATTGAGGAAAA+AGG 0.428119 3.1:+54171099 MS.gene008327:CDS
TCAGGGTGATGATTGGAAAC+AGG 0.428596 3.1:-54171009 None:intergenic
GCTGGATTGTTCACGGCATA+TGG 0.429292 3.1:-54173886 None:intergenic
TGCTGTTCTAGAATCTGATA+AGG 0.429800 3.1:+54171154 MS.gene008327:CDS
AAAGCTTATACCAAACGAAT+AGG 0.433676 3.1:-54172668 None:intergenic
ATCTGCTGAAAACTTTCCTC+TGG 0.440653 3.1:-54172615 None:intergenic
CCCGATCCTACATCTGTTGG+TGG 0.446698 3.1:+54172875 MS.gene008327:CDS
AATTTCATCATCCAAAGAAC+CGG 0.447322 3.1:+54174019 MS.gene008327:CDS
TTCCATAGCTGGATTGTTCA+CGG 0.448442 3.1:-54173893 None:intergenic
CCCTTGTTACTTAGGTTGCA+TGG 0.450989 3.1:-54174057 None:intergenic
ATGATAATGTGGTGAGTGAT+TGG 0.454378 3.1:+54171414 MS.gene008327:CDS
ATCATAATTTCACCGACTCC+AGG 0.458700 3.1:+54173019 MS.gene008327:CDS
TCTTCAGCTTCAGGCCTCAA+TGG 0.459779 3.1:-54171500 None:intergenic
GAAAGCTGAGGATGGAATTG+AGG 0.460065 3.1:+54171092 MS.gene008327:CDS
ATCCATTCCAATCAGAACTT+CGG 0.470941 3.1:-54173051 None:intergenic
GATTGAAATCTGAGGGTTCA+GGG 0.471581 3.1:-54171026 None:intergenic
TGAGGGTTCAGGGTGATGAT+TGG 0.472905 3.1:-54171016 None:intergenic
TGATAACGTCCAGGCATAGT+TGG 0.473282 3.1:-54174252 None:intergenic
GAAATTATGATTGGCACAAA+AGG 0.475046 3.1:-54173007 None:intergenic
GACAGTATTATTCAAGATCT+GGG 0.475323 3.1:+54172555 MS.gene008327:intron
GAACTTCGGGGAGAAGCCCC+TGG 0.478122 3.1:-54173037 None:intergenic
TCTGAAGCTCATCATCAAGT+TGG 0.490964 3.1:-54171056 None:intergenic
CTGAAGCTCATCATCAAGTT+GGG 0.493894 3.1:-54171055 None:intergenic
GGTTGGAATGGTGATTATGA+TGG 0.504782 3.1:+54171383 MS.gene008327:CDS
GTCAATTGATTGAAATCTGA+GGG 0.505859 3.1:-54171033 None:intergenic
CCCTGTTTGGAGAAGAAACC+AGG 0.508022 3.1:+54171583 MS.gene008327:CDS
GGAATGGTGATTATGATGGT+TGG 0.520805 3.1:+54171387 MS.gene008327:CDS
GATTCTTGAGACGGTTCCAT+TGG 0.523606 3.1:-54170943 None:intergenic
GGAGTCGGTGAAATTATGAT+TGG 0.524224 3.1:-54173016 None:intergenic
TGATGAGCTTCAGAACAAGT+TGG 0.527576 3.1:+54171065 MS.gene008327:CDS
AGGAGAAAGAGATGAATTGG+AGG 0.535415 3.1:+54171845 MS.gene008327:CDS
CCCCGAAGTTCTGATTGGAA+TGG 0.535856 3.1:+54173049 MS.gene008327:CDS
ATGATGAAATTTGCAATCCC+CGG 0.536184 3.1:-54174007 None:intergenic
TTCATTACCATATCCTGAAG+TGG 0.539474 3.1:-54172906 None:intergenic
TCATAATTTCACCGACTCCA+GGG 0.539855 3.1:+54173020 MS.gene008327:CDS
TTGGATTTGAAAGCTGAGGA+TGG 0.550068 3.1:+54171084 MS.gene008327:CDS
CGGGGAGAAGCCCCTGGAGT+CGG 0.550896 3.1:-54173031 None:intergenic
TGTGATTGAGATTCTTGAGA+CGG 0.553755 3.1:-54170952 None:intergenic
CCACCAACAGATGTAGGATC+GGG 0.553976 3.1:-54172875 None:intergenic
TGCCGTGAACAATCCAGCTA+TGG 0.554540 3.1:+54173891 MS.gene008327:CDS
GCTGTTCTAGAATCTGATAA+GGG 0.555394 3.1:+54171155 MS.gene008327:CDS
CATCCCGATCCTACATCTGT+TGG 0.557948 3.1:+54172872 MS.gene008327:CDS
GGTCAATTGATTGAAATCTG+AGG 0.564111 3.1:-54171034 None:intergenic
GGGGCGGTAGGTTTATCGGG+TGG 0.565245 3.1:-54174230 None:intergenic
GATGATGATGATGGTTGGAA+TGG 0.568080 3.1:+54171371 MS.gene008327:CDS
CCCACCAACAGATGTAGGAT+CGG 0.569132 3.1:-54172876 None:intergenic
CAGGGTGATGATTGGAAACA+GGG 0.570519 3.1:-54171008 None:intergenic
TCATACCCACCAACAGATGT+AGG 0.575467 3.1:-54172881 None:intergenic
CTTATACCAAACGAATAGGT+AGG 0.578718 3.1:-54172664 None:intergenic
ATCTGCCACAGTATCTGAGA+AGG 0.580494 3.1:+54171313 MS.gene008327:CDS
CCTGGTTTCTTCTCCAAACA+GGG 0.582322 3.1:-54171583 None:intergenic
CAAGTTGGATTTGAAAGCTG+AGG 0.582725 3.1:+54171080 MS.gene008327:CDS
GATGATGATGATGAAGTTGG+TGG 0.584356 3.1:+54171248 MS.gene008327:CDS
CATAATTTCACCGACTCCAG+GGG 0.587604 3.1:+54173021 MS.gene008327:CDS
AAATAACTTACAGGTCTCAA+AGG 0.588071 3.1:-54174084 None:intergenic
AAACTGCATTCAGGTTCACC+AGG 0.589001 3.1:-54173973 None:intergenic
GAGGATTATTGATAACGTCC+AGG 0.591670 3.1:-54174261 None:intergenic
GAGTGATTGGATTGAGAATG+AGG 0.592997 3.1:+54171427 MS.gene008327:CDS
ACAGTATCTGAGAAGGGACA+AGG 0.594511 3.1:+54171320 MS.gene008327:CDS
GAGGAAAGATCAAGCCTGCA+AGG 0.598207 3.1:+54171864 MS.gene008327:CDS
GGGTGGTCATACTTACAAGC+TGG 0.604093 3.1:-54174213 None:intergenic
ACAGTATTATTCAAGATCTG+GGG 0.604261 3.1:+54172556 MS.gene008327:intron
CAGTATTATTCAAGATCTGG+GGG 0.613736 3.1:+54172557 MS.gene008327:intron
CCGATCCTACATCTGTTGGT+GGG 0.615395 3.1:+54172876 MS.gene008327:CDS
CCAAACGAATAGGTAGGCCA+AGG 0.617276 3.1:-54172658 None:intergenic
ATAACGTCCAGGCATAGTTG+GGG 0.620064 3.1:-54174250 None:intergenic
TCCATGCAACCTAAGTAACA+AGG 0.620612 3.1:+54174056 MS.gene008327:CDS
TATGTTGATGAAAGAAGCAA+TGG 0.625149 3.1:+54171461 MS.gene008327:CDS
ATTGAGAATGAGGTGGTGAG+TGG 0.632045 3.1:+54171437 MS.gene008327:CDS
TGTAAATTTGATCACACCAG+AGG 0.632238 3.1:+54172599 MS.gene008327:CDS
TTCACGGCATATGGTGAAGG+TGG 0.632618 3.1:-54173877 None:intergenic
TTGTCCCTTCTCAGATACTG+TGG 0.633350 3.1:-54171318 None:intergenic
GTTGATGAAAGAAGCAATGG+TGG 0.638205 3.1:+54171464 MS.gene008327:CDS
CAACTGGTGTATGCTTATGA+CGG 0.648143 3.1:-54173933 None:intergenic
TAACGTCCAGGCATAGTTGG+GGG 0.648794 3.1:-54174249 None:intergenic
TTGTTCACGGCATATGGTGA+AGG 0.648890 3.1:-54173880 None:intergenic
TCTGCCACAGTATCTGAGAA+GGG 0.649421 3.1:+54171314 MS.gene008327:CDS
GAAGAGTTTCCAGAAAGACC+TGG 0.657339 3.1:+54173955 MS.gene008327:CDS
CAGTATCTGAGAAGGGACAA+GGG 0.662707 3.1:+54171321 MS.gene008327:CDS
TGGTTGGAATGATGATAATG+TGG 0.669541 3.1:+54171403 MS.gene008327:CDS
CCATGCAACCTAAGTAACAA+GGG 0.677766 3.1:+54174057 MS.gene008327:CDS
TGATGAGAAAGTGAATGAGA+AGG 0.685115 3.1:+54171217 MS.gene008327:CDS
GAGCTGAACAGTATCCATTG+AGG 0.685815 3.1:+54171486 MS.gene008327:CDS
AGGGTGATGATTGGAAACAG+GGG 0.708922 3.1:-54171007 None:intergenic
TTGTTACTTAGGTTGCATGG+AGG 0.735521 3.1:-54174054 None:intergenic
CCATTCCAATCAGAACTTCG+GGG 0.758521 3.1:-54173049 None:intergenic
TGATTGGATTGAGAATGAGG+TGG 0.762353 3.1:+54171430 MS.gene008327:CDS
TTTCTGGTAGAAGACCATGG+GGG 0.864818 3.1:-54172968 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCATTATTATTATTTGT+GGG + chr3.1:54171642-54171661 MS.gene008327:intron 10.0%
!! TTATTCATTATTATTATTTG+TGG + chr3.1:54171641-54171660 MS.gene008327:intron 10.0%
!!! CTTTTAAAAAAACTAAATGA+AGG + chr3.1:54171806-54171825 MS.gene008327:intron 15.0%
!!! TGTACATTTTTTTATATCAT+CGG + chr3.1:54173118-54173137 MS.gene008327:intron 15.0%
!!! TTTTTTTTCCTTTCTTTTTA+GGG + chr3.1:54173355-54173374 MS.gene008327:intron 15.0%
!! AAATGCAAGTAATATACTTA+AGG + chr3.1:54173603-54173622 MS.gene008327:intron 20.0%
!! GTTATAATCTAAATAATAGC+AGG - chr3.1:54172501-54172520 None:intergenic 20.0%
!! TCATAAGAATAATTAACTGA+CGG - chr3.1:54173765-54173784 None:intergenic 20.0%
!! TGCATTCATTTATGTATATT+AGG + chr3.1:54171687-54171706 MS.gene008327:intron 20.0%
!!! AAACTTTTTTCTCTCTTTTT+AGG + chr3.1:54173327-54173346 MS.gene008327:intron 20.0%
!!! CTTTTTTTTCCTTTCTTTTT+AGG + chr3.1:54173354-54173373 MS.gene008327:intron 20.0%
!!! TTTGCTATATTGAAAAATGT+TGG + chr3.1:54172391-54172410 MS.gene008327:intron 20.0%
!!! TTTTTCTGACATAATTTACT+CGG - chr3.1:54172284-54172303 None:intergenic 20.0%
! AAATGTTAGATCAAAGAAAC+TGG - chr3.1:54174123-54174142 None:intergenic 25.0%
! AATAGAATGGATGTATATAC+TGG - chr3.1:54173395-54173414 None:intergenic 25.0%
! ATATCATAACATTAGGAAAC+AGG - chr3.1:54172535-54172554 None:intergenic 25.0%
! ATCAGAGTAAAATAACTTAC+AGG - chr3.1:54174096-54174115 None:intergenic 25.0%
! CAAAACAACAAATAATAGAG+AGG - chr3.1:54173704-54173723 None:intergenic 25.0%
! CAAATTTGCAAATTCCATAT+CGG - chr3.1:54174191-54174210 None:intergenic 25.0%
! GACATTGTATGATAGAAAAT+TGG - chr3.1:54173166-54173185 None:intergenic 25.0%
! GTATAGTTAATACTGAGTTA+TGG + chr3.1:54173243-54173262 MS.gene008327:intron 25.0%
! GTCAGTTAATTATTCTTATG+AGG + chr3.1:54173764-54173783 MS.gene008327:intron 25.0%
! TACTGTCATATCATAACATT+AGG - chr3.1:54172542-54172561 None:intergenic 25.0%
! TCTTATATGTTATAGCATAG+TGG + chr3.1:54172114-54172133 MS.gene008327:intron 25.0%
! TGCCTATACAAAATACAAAT+TGG - chr3.1:54173827-54173846 None:intergenic 25.0%
! TTAATATCTCGTGAAATTCA+GGG + chr3.1:54174141-54174160 MS.gene008327:intron 25.0%
! TTTAATATCTCGTGAAATTC+AGG + chr3.1:54174140-54174159 MS.gene008327:intron 25.0%
!! GACCAATTTGTATTTTGTAT+AGG + chr3.1:54173822-54173841 MS.gene008327:intron 25.0%
!! TGTTCTTTTTATCTTAAGAC+TGG + chr3.1:54171524-54171543 MS.gene008327:CDS 25.0%
!!! TAATTTTGAAAATACCTTGC+AGG - chr3.1:54171881-54171900 None:intergenic 25.0%
!!! TTGACTTTTAAGTAACTGAT+GGG - chr3.1:54173309-54173328 None:intergenic 25.0%
!!! TTTGACTTTTAAGTAACTGA+TGG - chr3.1:54173310-54173329 None:intergenic 25.0%
!!! TTTTTCAATATAGCAAAGCT+AGG - chr3.1:54172388-54172407 None:intergenic 25.0%
AAAAACACGGCTAAAATTTC+AGG - chr3.1:54172773-54172792 None:intergenic 30.0%
AAAACACGGCTAAAATTTCA+GGG - chr3.1:54172772-54172791 None:intergenic 30.0%
AAAAGAGACCCTAAAAAGAA+AGG - chr3.1:54173366-54173385 None:intergenic 30.0%
AAAGCTTATACCAAACGAAT+AGG - chr3.1:54172671-54172690 None:intergenic 30.0%
AAATAACTTACAGGTCTCAA+AGG - chr3.1:54174087-54174106 None:intergenic 30.0%
AATTTCATCATCCAAAGAAC+CGG + chr3.1:54174019-54174038 MS.gene008327:CDS 30.0%
ACAGTATTATTCAAGATCTG+GGG + chr3.1:54172556-54172575 MS.gene008327:intron 30.0%
AGAATAATTAACTGACGGAA+AGG - chr3.1:54173760-54173779 None:intergenic 30.0%
ATACAAATTGGTCAAATTGC+TGG - chr3.1:54173815-54173834 None:intergenic 30.0%
ATCAATTATGAATATGCTGC+TGG + chr3.1:54172327-54172346 MS.gene008327:intron 30.0%
CATTTCAGATTAAGTACCTT+TGG + chr3.1:54173427-54173446 MS.gene008327:intron 30.0%
CCCTATCATGAAAAAAAACA+CGG - chr3.1:54172786-54172805 None:intergenic 30.0%
CGATATGGAATTTGCAAATT+TGG + chr3.1:54174189-54174208 MS.gene008327:CDS 30.0%
GAAATTATGATTGGCACAAA+AGG - chr3.1:54173010-54173029 None:intergenic 30.0%
GACAGTATTATTCAAGATCT+GGG + chr3.1:54172555-54172574 MS.gene008327:intron 30.0%
GTCAATTGATTGAAATCTGA+GGG - chr3.1:54171036-54171055 None:intergenic 30.0%
GTTAATTATTCTTATGAGGC+AGG + chr3.1:54173768-54173787 MS.gene008327:intron 30.0%
TACAAATTGGTCAAATTGCT+GGG - chr3.1:54173814-54173833 None:intergenic 30.0%
TCAAGAATCTCAATCACATT+TGG + chr3.1:54170957-54170976 MS.gene008327:CDS 30.0%
TGACAGTATTATTCAAGATC+TGG + chr3.1:54172554-54172573 MS.gene008327:intron 30.0%
TGCAGTTTCTTCTTAAAAAC+CGG + chr3.1:54173988-54174007 MS.gene008327:CDS 30.0%
TGTTGTCAAATAGACTATAG+CGG + chr3.1:54172177-54172196 MS.gene008327:intron 30.0%
TTTAAGAAGAAACTGCATTC+AGG - chr3.1:54173985-54174004 None:intergenic 30.0%
TTTGTTAGTAATTGCCCTTA+GGG + chr3.1:54173487-54173506 MS.gene008327:intron 30.0%
! AACAAATAATAGAGAGGTGT+AGG - chr3.1:54173698-54173717 None:intergenic 30.0%
! AATAAGAGTGTACTAGAAAG+AGG - chr3.1:54171626-54171645 None:intergenic 30.0%
! AATTTTGTAATCCGGTTCTT+TGG - chr3.1:54174033-54174052 None:intergenic 30.0%
! AGCAGTTTCATTGAATTTTC+TGG - chr3.1:54172987-54173006 None:intergenic 30.0%
! ATGGAGGTAATTTTGTAATC+CGG - chr3.1:54174041-54174060 None:intergenic 30.0%
! ATTTGTTAGTAATTGCCCTT+AGG + chr3.1:54173486-54173505 MS.gene008327:intron 30.0%
! GTACTTAATCTGAAATGATG+TGG - chr3.1:54173424-54173443 None:intergenic 30.0%
! TATGTTGATGAAAGAAGCAA+TGG + chr3.1:54171461-54171480 MS.gene008327:CDS 30.0%
! TTTTATGAATGCCTTGACTA+TGG + chr3.1:54171942-54171961 MS.gene008327:intron 30.0%
!! AAAGGTTCAAACTTTGAAGT+TGG + chr3.1:54171117-54171136 MS.gene008327:intron 30.0%
!! AAATGAAGGTTTTTAGAGAG+AGG + chr3.1:54171820-54171839 MS.gene008327:intron 30.0%
!! AATGAAGGTTTTTAGAGAGA+GGG + chr3.1:54171821-54171840 MS.gene008327:intron 30.0%
!! TGACTTTTAAGTAACTGATG+GGG - chr3.1:54173308-54173327 None:intergenic 30.0%
!!! CCGTGTTTTTTTTCATGATA+GGG + chr3.1:54172783-54172802 MS.gene008327:intron 30.0%
AAGACTGGAACTTGCAAATT+TGG + chr3.1:54171539-54171558 MS.gene008327:CDS 35.0%
ACAAGTTTAAGAAATGGCTC+AGG - chr3.1:54172478-54172497 None:intergenic 35.0%
AGCAGGACAAGTTTAAGAAA+TGG - chr3.1:54172484-54172503 None:intergenic 35.0%
ATAGGTAGTGTTGTCAATCA+CGG - chr3.1:54172249-54172268 None:intergenic 35.0%
ATCCATTCCAATCAGAACTT+CGG - chr3.1:54173054-54173073 None:intergenic 35.0%
ATGATAGAAAATTGGCAGAG+TGG - chr3.1:54173158-54173177 None:intergenic 35.0%
ATGATGAAATTTGCAATCCC+CGG - chr3.1:54174010-54174029 None:intergenic 35.0%
ATTATTGACAACTGTGGACT+AGG - chr3.1:54173203-54173222 None:intergenic 35.0%
ATTGTCAAATAGCGGCTATA+GGG + chr3.1:54172088-54172107 MS.gene008327:intron 35.0%
CAGTATTATTCAAGATCTGG+GGG + chr3.1:54172557-54172576 MS.gene008327:intron 35.0%
CAGTTTCTTCTTAAAAACCG+GGG + chr3.1:54173990-54174009 MS.gene008327:CDS 35.0%
CTCCTCTCAGAAAAATAGAA+AGG - chr3.1:54173850-54173869 None:intergenic 35.0%
CTTATACCAAACGAATAGGT+AGG - chr3.1:54172667-54172686 None:intergenic 35.0%
GAACATAAGAAAGTGATACC+TGG - chr3.1:54171604-54171623 None:intergenic 35.0%
GAATATGCTGCTGGAATAAT+GGG + chr3.1:54172336-54172355 MS.gene008327:intron 35.0%
GATTGTGTAAGGTTAACTCT+AGG + chr3.1:54172019-54172038 MS.gene008327:intron 35.0%
GCAGTTTCTTCTTAAAAACC+GGG + chr3.1:54173989-54174008 MS.gene008327:CDS 35.0%
GGTCAATTGATTGAAATCTG+AGG - chr3.1:54171037-54171056 None:intergenic 35.0%
TAAGCATTCATTTCCATAGC+TGG - chr3.1:54173907-54173926 None:intergenic 35.0%
TACAATGTCAATGTTTCCTG+TGG + chr3.1:54173177-54173196 MS.gene008327:intron 35.0%
TATTGTCAAATAGCGGCTAT+AGG + chr3.1:54172087-54172106 MS.gene008327:intron 35.0%
TGAATATGCTGCTGGAATAA+TGG + chr3.1:54172335-54172354 MS.gene008327:intron 35.0%
TGATGAGAAAGTGAATGAGA+AGG + chr3.1:54171217-54171236 MS.gene008327:CDS 35.0%
TGCTCAGTATTGTCAAATAG+CGG + chr3.1:54172080-54172099 MS.gene008327:intron 35.0%
TGTAAATTTGATCACACCAG+AGG + chr3.1:54172599-54172618 MS.gene008327:CDS 35.0%
TGTGATTGAGATTCTTGAGA+CGG - chr3.1:54170955-54170974 None:intergenic 35.0%
TTCATTACCATATCCTGAAG+TGG - chr3.1:54172909-54172928 None:intergenic 35.0%
TTCTGATTGGAATGGATATC+AGG + chr3.1:54173057-54173076 MS.gene008327:CDS 35.0%
TTGTCAATCACGGAAAATAG+TGG - chr3.1:54172239-54172258 None:intergenic 35.0%
! ACTGATGATGATGATGAAGT+TGG + chr3.1:54171245-54171264 MS.gene008327:CDS 35.0%
! ATGATAATGTGGTGAGTGAT+TGG + chr3.1:54171414-54171433 MS.gene008327:CDS 35.0%
! GATGATGATGATGATGATGA+TGG + chr3.1:54171191-54171210 MS.gene008327:CDS 35.0%
! GTTGGTGGAATTGATGATAA+AGG + chr3.1:54171263-54171282 MS.gene008327:CDS 35.0%
! TGGTTGGAATGATGATAATG+TGG + chr3.1:54171403-54171422 MS.gene008327:CDS 35.0%
!! AATTTTCTGGTAGAAGACCA+TGG - chr3.1:54172974-54172993 None:intergenic 35.0%
!! ATGATGATGATGATGATGGT+TGG + chr3.1:54171366-54171385 MS.gene008327:CDS 35.0%
!! ATTTTCTGGTAGAAGACCAT+GGG - chr3.1:54172973-54172992 None:intergenic 35.0%
!! CACCTTTCTATTTTTCTGAG+AGG + chr3.1:54173845-54173864 MS.gene008327:CDS 35.0%
!! GCTGTTCTAGAATCTGATAA+GGG + chr3.1:54171155-54171174 MS.gene008327:CDS 35.0%
!! TCAGTATAGCTTGCTAAGTA+AGG - chr3.1:54172697-54172716 None:intergenic 35.0%
!! TGCTGTTCTAGAATCTGATA+AGG + chr3.1:54171154-54171173 MS.gene008327:CDS 35.0%
!!! GCCGTGTTTTTTTTCATGAT+AGG + chr3.1:54172782-54172801 MS.gene008327:intron 35.0%
!!! GTTTTAGAGCTTAACTTCCT+TGG + chr3.1:54172641-54172660 MS.gene008327:CDS 35.0%
!!! TCTTTTTAGGGTCTCTTTTG+TGG + chr3.1:54173367-54173386 MS.gene008327:intron 35.0%
AAACTTCCGTTGTTGTATCC+TGG + chr3.1:54172362-54172381 MS.gene008327:intron 40.0%
AAAGAACAGTCTTCAGCTTC+AGG - chr3.1:54171512-54171531 None:intergenic 40.0%
AAATTGCTGGGAAAATGGCA+AGG - chr3.1:54173802-54173821 None:intergenic 40.0%
AACCTTACACAATCTCCCAT+GGG - chr3.1:54172013-54172032 None:intergenic 40.0%
AGGAGAAAGAGATGAATTGG+AGG + chr3.1:54171845-54171864 MS.gene008327:CDS 40.0%
ATCTGCTGAAAACTTTCCTC+TGG - chr3.1:54172618-54172637 None:intergenic 40.0%
CAACTGGTGTATGCTTATGA+CGG - chr3.1:54173936-54173955 None:intergenic 40.0%
CCATGCAACCTAAGTAACAA+GGG + chr3.1:54174057-54174076 MS.gene008327:CDS 40.0%
CTGAAGCTCATCATCAAGTT+GGG - chr3.1:54171058-54171077 None:intergenic 40.0%
CTGAGCATTATTGACAACTG+TGG - chr3.1:54173209-54173228 None:intergenic 40.0%
GAGGATGGAATTGAGGAAAA+AGG + chr3.1:54171099-54171118 MS.gene008327:CDS 40.0%
GAGTGATTGGATTGAGAATG+AGG + chr3.1:54171427-54171446 MS.gene008327:CDS 40.0%
GAGTTATGGCATGATCTGTA+AGG + chr3.1:54173257-54173276 MS.gene008327:intron 40.0%
GATGTGGTTGTGCAATAGAA+TGG - chr3.1:54173408-54173427 None:intergenic 40.0%
GATTGAAATCTGAGGGTTCA+GGG - chr3.1:54171029-54171048 None:intergenic 40.0%
GCAAGTTTAATCACCCTGTT+TGG + chr3.1:54171570-54171589 MS.gene008327:CDS 40.0%
GGAATGGTGATTATGATGGT+TGG + chr3.1:54171387-54171406 MS.gene008327:CDS 40.0%
GGAGTCGGTGAAATTATGAT+TGG - chr3.1:54173019-54173038 None:intergenic 40.0%
GGTTGGAATGGTGATTATGA+TGG + chr3.1:54171383-54171402 MS.gene008327:CDS 40.0%
GTGGTGAAGGAAACAACAAT+TGG + chr3.1:54173512-54173531 MS.gene008327:intron 40.0%
TAACCTTACACAATCTCCCA+TGG - chr3.1:54172014-54172033 None:intergenic 40.0%
TAACTGACGGAAAGGAAGAA+AGG - chr3.1:54173752-54173771 None:intergenic 40.0%
TATGACTCCACTTCAGGATA+TGG + chr3.1:54172899-54172918 MS.gene008327:CDS 40.0%
TCCATGCAACCTAAGTAACA+AGG + chr3.1:54174056-54174075 MS.gene008327:CDS 40.0%
TCCATTCCAATCAGAACTTC+GGG - chr3.1:54173053-54173072 None:intergenic 40.0%
TGATGAGCTTCAGAACAAGT+TGG + chr3.1:54171065-54171084 MS.gene008327:CDS 40.0%
TGATTGAAATCTGAGGGTTC+AGG - chr3.1:54171030-54171049 None:intergenic 40.0%
TGATTGGATTGAGAATGAGG+TGG + chr3.1:54171430-54171449 MS.gene008327:CDS 40.0%
TGCACTCATTACAACCGATA+TGG + chr3.1:54174174-54174193 MS.gene008327:CDS 40.0%
TGCTCCAAACTTACAAGAAC+CGG - chr3.1:54172837-54172856 None:intergenic 40.0%
TGGTCAAATTGCTGGGAAAA+TGG - chr3.1:54173807-54173826 None:intergenic 40.0%
TGTAATGAGTGCACACATTC+TGG - chr3.1:54174167-54174186 None:intergenic 40.0%
TGTGTAAGGTTAACTCTAGG+AGG + chr3.1:54172022-54172041 MS.gene008327:intron 40.0%
TGTTGCATGCCATTCTTATG+AGG + chr3.1:54173722-54173741 MS.gene008327:intron 40.0%
TTCCATAGCTGGATTGTTCA+CGG - chr3.1:54173896-54173915 None:intergenic 40.0%
TTGGATTTGAAAGCTGAGGA+TGG + chr3.1:54171084-54171103 MS.gene008327:CDS 40.0%
TTGTCAAATAGCGGCTATAG+GGG + chr3.1:54172089-54172108 MS.gene008327:intron 40.0%
! CAAGTTGGATTTGAAAGCTG+AGG + chr3.1:54171080-54171099 MS.gene008327:CDS 40.0%
! CTTTCTGGAAACTCTTCAAC+TGG - chr3.1:54173952-54173971 None:intergenic 40.0%
! GATGATGATGATGAAGTTGG+TGG + chr3.1:54171248-54171267 MS.gene008327:CDS 40.0%
! GTTGATGAAAGAAGCAATGG+TGG + chr3.1:54171464-54171483 MS.gene008327:CDS 40.0%
! TCTGAAGCTCATCATCAAGT+TGG - chr3.1:54171059-54171078 None:intergenic 40.0%
! TTGTTACTTAGGTTGCATGG+AGG - chr3.1:54174057-54174076 None:intergenic 40.0%
!! ATCATAATTTCACCGACTCC+AGG + chr3.1:54173019-54173038 MS.gene008327:CDS 40.0%
!! GATGATGATGATGGTTGGAA+TGG + chr3.1:54171371-54171390 MS.gene008327:CDS 40.0%
!! TCATAATTTCACCGACTCCA+GGG + chr3.1:54173020-54173039 MS.gene008327:CDS 40.0%
!! TTTTCTGGTAGAAGACCATG+GGG - chr3.1:54172972-54172991 None:intergenic 40.0%
AAAGGCCTGCCTCATAAGAA+TGG - chr3.1:54173734-54173753 None:intergenic 45.0%
AACCGGTGCGCATGTAATAA+GGG - chr3.1:54172820-54172839 None:intergenic 45.0%
ACAGTATCTGAGAAGGGACA+AGG + chr3.1:54171320-54171339 MS.gene008327:CDS 45.0%
ACCTGGTTTCTTCTCCAAAC+AGG - chr3.1:54171587-54171606 None:intergenic 45.0%
ACTTCTGAGCATGCATCCAA+AGG - chr3.1:54173446-54173465 None:intergenic 45.0%
AGATCTGGGGGTTGTAAGTT+TGG + chr3.1:54172569-54172588 MS.gene008327:CDS 45.0%
AGGGTGATGATTGGAAACAG+GGG - chr3.1:54171010-54171029 None:intergenic 45.0%
AGTAATTGCCCTTAGGGTAG+TGG + chr3.1:54173493-54173512 MS.gene008327:intron 45.0%
ATAACGTCCAGGCATAGTTG+GGG - chr3.1:54174253-54174272 None:intergenic 45.0%
ATCTGCCACAGTATCTGAGA+AGG + chr3.1:54171313-54171332 MS.gene008327:CDS 45.0%
ATTGAGAATGAGGTGGTGAG+TGG + chr3.1:54171437-54171456 MS.gene008327:CDS 45.0%
CAATATAGCAAAGCTAGGCC+AGG - chr3.1:54172383-54172402 None:intergenic 45.0%
CAGGGTGATGATTGGAAACA+GGG - chr3.1:54171011-54171030 None:intergenic 45.0%
CAGTATCTGAGAAGGGACAA+GGG + chr3.1:54171321-54171340 MS.gene008327:CDS 45.0%
CCATTCCAATCAGAACTTCG+GGG - chr3.1:54173052-54173071 None:intergenic 45.0%
CCTGGTTTCTTCTCCAAACA+GGG - chr3.1:54171586-54171605 None:intergenic 45.0%
GAAAGCTGAGGATGGAATTG+AGG + chr3.1:54171092-54171111 MS.gene008327:CDS 45.0%
GAAGAGTTTCCAGAAAGACC+TGG + chr3.1:54173955-54173974 MS.gene008327:CDS 45.0%
GAGCTGAACAGTATCCATTG+AGG + chr3.1:54171486-54171505 MS.gene008327:CDS 45.0%
GATAACGTCCAGGCATAGTT+GGG - chr3.1:54174254-54174273 None:intergenic 45.0%
GGCAGGAGAAAGAGATGAAT+TGG + chr3.1:54171842-54171861 MS.gene008327:CDS 45.0%
TCAGGGTGATGATTGGAAAC+AGG - chr3.1:54171012-54171031 None:intergenic 45.0%
TCATACCCACCAACAGATGT+AGG - chr3.1:54172884-54172903 None:intergenic 45.0%
TCTGCCACAGTATCTGAGAA+GGG + chr3.1:54171314-54171333 MS.gene008327:CDS 45.0%
TGGGGGTTGTAAGTTTGGAA+AGG + chr3.1:54172574-54172593 MS.gene008327:CDS 45.0%
TGTCAAATAGCGGCTATAGG+GGG + chr3.1:54172090-54172109 MS.gene008327:intron 45.0%
TTCCTTCACCACTACCCTAA+GGG - chr3.1:54173504-54173523 None:intergenic 45.0%
TTGTCCCTTCTCAGATACTG+TGG - chr3.1:54171321-54171340 None:intergenic 45.0%
TTGTTCACGGCATATGGTGA+AGG - chr3.1:54173883-54173902 None:intergenic 45.0%
TTTCCTTCACCACTACCCTA+AGG - chr3.1:54173505-54173524 None:intergenic 45.0%
! AAACTGCATTCAGGTTCACC+AGG - chr3.1:54173976-54173995 None:intergenic 45.0%
! AAGGCAGACCCTTGTTACTT+AGG - chr3.1:54174068-54174087 None:intergenic 45.0%
! CCCTTGTTACTTAGGTTGCA+TGG - chr3.1:54174060-54174079 None:intergenic 45.0%
! TGATAACGTCCAGGCATAGT+TGG - chr3.1:54174255-54174274 None:intergenic 45.0%
! TTTCTGGTAGAAGACCATGG+GGG - chr3.1:54172971-54172990 None:intergenic 45.0%
!! AAGGTTTTTAGAGAGAGGGC+AGG + chr3.1:54171825-54171844 MS.gene008327:intron 45.0%
!! CATAATTTCACCGACTCCAG+GGG + chr3.1:54173021-54173040 MS.gene008327:CDS 45.0%
AATGCAAATTCCCCTGCCCA+TGG + chr3.1:54171994-54172013 MS.gene008327:intron 50.0%
ACTCGGTCGAACTCAAGCAT+AGG - chr3.1:54172267-54172286 None:intergenic 50.0%
ATGCAAATTCCCCTGCCCAT+GGG + chr3.1:54171995-54172014 MS.gene008327:intron 50.0%
CACGGCTAAAATTTCAGGGC+AGG - chr3.1:54172768-54172787 None:intergenic 50.0%
CATCCCGATCCTACATCTGT+TGG + chr3.1:54172872-54172891 MS.gene008327:CDS 50.0%
CCAAACGAATAGGTAGGCCA+AGG - chr3.1:54172661-54172680 None:intergenic 50.0%
CCACCAACAGATGTAGGATC+GGG - chr3.1:54172878-54172897 None:intergenic 50.0%
CCCACCAACAGATGTAGGAT+CGG - chr3.1:54172879-54172898 None:intergenic 50.0%
CCCTGTTTGGAGAAGAAACC+AGG + chr3.1:54171583-54171602 MS.gene008327:CDS 50.0%
CCGATCCTACATCTGTTGGT+GGG + chr3.1:54172876-54172895 MS.gene008327:CDS 50.0%
CCTTGGCCTACCTATTCGTT+TGG + chr3.1:54172658-54172677 MS.gene008327:CDS 50.0%
GAACCGGTGCGCATGTAATA+AGG - chr3.1:54172821-54172840 None:intergenic 50.0%
GAGGAAAGATCAAGCCTGCA+AGG + chr3.1:54171864-54171883 MS.gene008327:CDS 50.0%
GCATGCCATTCTTATGAGGC+AGG + chr3.1:54173726-54173745 MS.gene008327:intron 50.0%
GCTAGGCCAGGATACAACAA+CGG - chr3.1:54172371-54172390 None:intergenic 50.0%
GCTGGATTGTTCACGGCATA+TGG - chr3.1:54173889-54173908 None:intergenic 50.0%
GGGAAAATGGCAAGGAAGAG+AGG - chr3.1:54173794-54173813 None:intergenic 50.0%
GGGTGGTCATACTTACAAGC+TGG - chr3.1:54174216-54174235 None:intergenic 50.0%
TAACGTCCAGGCATAGTTGG+GGG - chr3.1:54174252-54174271 None:intergenic 50.0%
TACACAATCTCCCATGGGCA+GGG - chr3.1:54172008-54172027 None:intergenic 50.0%
TCAGGTTCACCAGGTCTTTC+TGG - chr3.1:54173967-54173986 None:intergenic 50.0%
TCTTCAGCTTCAGGCCTCAA+TGG - chr3.1:54171503-54171522 None:intergenic 50.0%
TGAGGGTTCAGGGTGATGAT+TGG - chr3.1:54171019-54171038 None:intergenic 50.0%
TGCCCATGGGAGATTGTGTA+AGG + chr3.1:54172008-54172027 MS.gene008327:intron 50.0%
TGCCCTTATTACATGCGCAC+CGG + chr3.1:54172815-54172834 MS.gene008327:intron 50.0%
TGCCGTGAACAATCCAGCTA+TGG + chr3.1:54173891-54173910 MS.gene008327:CDS 50.0%
TTACACAATCTCCCATGGGC+AGG - chr3.1:54172009-54172028 None:intergenic 50.0%
TTCACGGCATATGGTGAAGG+TGG - chr3.1:54173880-54173899 None:intergenic 50.0%
! CCCCGAAGTTCTGATTGGAA+TGG + chr3.1:54173049-54173068 MS.gene008327:CDS 50.0%
! CTTCTCCCCGAAGTTCTGAT+TGG + chr3.1:54173044-54173063 MS.gene008327:CDS 50.0%
!! CGCACCGGTTCTTGTAAGTT+TGG + chr3.1:54172830-54172849 MS.gene008327:intron 50.0%
ACACAATCTCCCATGGGCAG+GGG - chr3.1:54172007-54172026 None:intergenic 55.0%
CCCGATCCTACATCTGTTGG+TGG + chr3.1:54172875-54172894 MS.gene008327:CDS 55.0%
CGACGCACAAGCCATAGTCA+AGG - chr3.1:54171956-54171975 None:intergenic 55.0%
GGTGGGTATGACTCCACTTC+AGG + chr3.1:54172893-54172912 MS.gene008327:CDS 55.0%
GTTGGGGGCGGTAGGTTTAT+CGG - chr3.1:54174237-54174256 None:intergenic 55.0%
TTGGGGGCGGTAGGTTTATC+GGG - chr3.1:54174236-54174255 None:intergenic 55.0%
! TGCCCTTAGGGTAGTGGTGA+AGG + chr3.1:54173499-54173518 MS.gene008327:intron 55.0%
!! ACAACTGTGGACTAGGCCAC+AGG - chr3.1:54173196-54173215 None:intergenic 55.0%
CACAATCGTCCACACCCCCA+TGG + chr3.1:54172954-54172973 MS.gene008327:CDS 60.0%
GGTAGAAGACCATGGGGGTG+TGG - chr3.1:54172966-54172985 None:intergenic 60.0%
CAGGCATAGTTGGGGGCGGT+AGG - chr3.1:54174245-54174264 None:intergenic 65.0%
CGTCCAGGCATAGTTGGGGG+CGG - chr3.1:54174249-54174268 None:intergenic 65.0%
CTACCGCCCCCAACTATGCC+TGG + chr3.1:54174243-54174262 MS.gene008327:CDS 65.0%
GAACTTCGGGGAGAAGCCCC+TGG - chr3.1:54173040-54173059 None:intergenic 65.0%
GGGGCGGTAGGTTTATCGGG+TGG - chr3.1:54174233-54174252 None:intergenic 65.0%
CGGGGAGAAGCCCCTGGAGT+CGG - chr3.1:54173034-54173053 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 54170946 54174278 54170946 ID=MS.gene008327
chr3.1 mRNA 54170946 54174278 54170946 ID=MS.gene008327.t1;Parent=MS.gene008327
chr3.1 exon 54170946 54171120 54170946 ID=MS.gene008327.t1.exon1;Parent=MS.gene008327.t1
chr3.1 CDS 54170946 54171120 54170946 ID=cds.MS.gene008327.t1;Parent=MS.gene008327.t1
chr3.1 exon 54171153 54171604 54171153 ID=MS.gene008327.t1.exon2;Parent=MS.gene008327.t1
chr3.1 CDS 54171153 54171604 54171153 ID=cds.MS.gene008327.t1;Parent=MS.gene008327.t1
chr3.1 exon 54171828 54171914 54171828 ID=MS.gene008327.t1.exon3;Parent=MS.gene008327.t1
chr3.1 CDS 54171828 54171914 54171828 ID=cds.MS.gene008327.t1;Parent=MS.gene008327.t1
chr3.1 exon 54172560 54172679 54172560 ID=MS.gene008327.t1.exon4;Parent=MS.gene008327.t1
chr3.1 CDS 54172560 54172679 54172560 ID=cds.MS.gene008327.t1;Parent=MS.gene008327.t1
chr3.1 exon 54172866 54173078 54172866 ID=MS.gene008327.t1.exon5;Parent=MS.gene008327.t1
chr3.1 CDS 54172866 54173078 54172866 ID=cds.MS.gene008327.t1;Parent=MS.gene008327.t1
chr3.1 exon 54173844 54174095 54173844 ID=MS.gene008327.t1.exon6;Parent=MS.gene008327.t1
chr3.1 CDS 54173844 54174095 54173844 ID=cds.MS.gene008327.t1;Parent=MS.gene008327.t1
chr3.1 exon 54174162 54174278 54174162 ID=MS.gene008327.t1.exon7;Parent=MS.gene008327.t1
chr3.1 CDS 54174162 54174278 54174162 ID=cds.MS.gene008327.t1;Parent=MS.gene008327.t1
Gene Sequence

>MS.gene008327

ATGGAACCGTCTCAAGAATCTCAATCACATTTGGCTTCTTCTCATCATGTTCAACATATTTCCCCTGTTTCCAATCATCACCCTGAACCCTCAGATTTCAATCAATTGACCCAACTTGATGATGAGCTTCAGAACAAGTTGGATTTGAAAGCTGAGGATGGAATTGAGGAAAAAGGTTCAAACTTTGAAGTTGGTGATGAAATGAAGCTGCTGTTCTAGAATCTGATAAGGGACAAGAGTGTCATGATGATGATGATGATGATGATGATGATGATGAGAAAGTGAATGAGAAGGTGAGTACTGATGATGATGATGAAGTTGGTGGAATTGATGATAAAGGTTCAAACTTTGAAGTTGATGATGAAAAATCTGCCACAGTATCTGAGAAGGGACAAGGGTTTCATCAATTTGATGATGATGATGATGATGATGATGATGGTTGGAATGGTGATTATGATGGTTGGAATGATGATAATGTGGTGAGTGATTGGATTGAGAATGAGGTGGTGAGTGGATATGTTGATGAAAGAAGCAATGGTGGAGCTGAACAGTATCCATTGAGGCCTGAAGCTGAAGACTGTTCTTTTTATCTTAAGACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCTGTTTGGAGAAGAAACCAGGTATCACTTTCTTATGTTCCTCTTTCTAGTACACTCTTATTCATTATTATTATTTGTGGGTGCATTGAATGTTTAATACTAATGCATTCATTTATGTATATTAGGTATTGAAAGAGAAGCATAAATTTCACTCATGCAAACATGTTCACTTCTTAAAAGTTGCTTCTGTGTTTTCATGATTTAATTGACTTTTATTTAAAACTTTTAAAAAAACTAAATGAAGGTTTTTAGAGAGAGGGCAGGAGAAAGAGATGAATTGGAGGAAAGATCAAGCCTGCAAGGTATTTTCAAAATTATGCTGTCATATTCTGTTGAAAACTTTAGATTTAATATTGTATTTTATGAATGCCTTGACTATGGCTTGTGCGTCGATTGCATGTAGTTATTAAAATGCAAATTCCCCTGCCCATGGGAGATTGTGTAAGGTTAACTCTAGGAGGTGTACATGTACATGTATTTTATATTCTTCATTCTTTGCTCAGTATTGTCAAATAGCGGCTATAGGGGGTTCTTATATGTTATAGCATAGTGGAATATGAACGAATCACTATTCTTTAATGATAAGTACAGAGTGTTGTCAAATAGACTATAGCGGCACTGTAGCAATGTAGCGTAACAGAATTTTAAAAAACCACTATTTTCCGTGATTGACAACACTACCTATGCTTGAGTTCGACCGAGTAAATTATGTCAGAAAAATTATTTTATGCTAGAATTATTTGATCAATTATGAATATGCTGCTGGAATAATGGGAAAAAACTTCCGTTGTTGTATCCTGGCCTAGCTTTGCTATATTGAAAAATGTTGGATCTCTTAAACAATGTTTAGATGTAACATGCTTGCATACGATGTGTATGTTTATTCTCTTTCCTGAGCCATTTCTTAAACTTGTCCTGCTATTATTTAGATTATAACGATTTTTTTTTCCTGTTTCCTAATGTTATGATATGACAGTATTATTCAAGATCTGGGGGTTGTAAGTTTGGAAAGGATTGTAAATTTGATCACACCAGAGGAAAGTTTTCAGCAGATCAAGTTTTAGAGCTTAACTTCCTTGGCCTACCTATTCGTTTGGTATAAGCTTTTTTCCTTACTTAGCAAGCTATACTGAAAGTTTGTTTGCATACATTATCAGCTATCTTTTTCTGCTGTCAAAATACCTGCCCTGAAATTTTAGCCGTGTTTTTTTTCATGATAGGGTAAAAAGAATGCCCTTATTACATGCGCACCGGTTCTTGTAAGTTTGGAGCAAACTGAAAGTTTAATCATCCCGATCCTACATCTGTTGGTGGGTATGACTCCACTTCAGGATATGGTAATGAAAGTTCTATTTCATTGCAAGATGTGTCACAATCGTCCACACCCCCATGGTCTTCTACCAGAAAATTCAATGAAACTGCTCCTTTTGTGCCAATCATAATTTCACCGACTCCAGGGGCTTCTCCCCGAAGTTCTGATTGGAATGGATATCAGGTAAAATCGATAGACTTGATGCTAATAACTATGTAACAATGTACATTTTTTTATATCATCGGTACATGATGACAGACCACTCTGCCAATTTTCTATCATACAATGTCAATGTTTCCTGTGGCCTAGTCCACAGTTGTCAATAATGCTCAGTTTAATGTGTGTTTGTATAGTTAATACTGAGTTATGGCATGATCTGTAAGGTATTAAGTATTGAGATTTACATACTCCCCATCAGTTACTTAAAAGTCAAACTTTTTTCTCTCTTTTTAGGCTCTCTTTTTTTTCCTTTCTTTTTAGGGTCTCTTTTGTGGATCCAGTATATACATCCATTCTATTGCACAACCACATCATTTCAGATTAAGTACCTTTGGATGCATGCTCAGAAGTAAAATAGATTAGTAACAAGAATTTGTTAGTAATTGCCCTTAGGGTAGTGGTGAAGGAAACAACAATTGGAAGTTTAAATGAAAACTTCAAAGTAGAAACATTTCTGAAGTAATCAATTACATTTCATATAAGTCGTTAAATGCAAGTAATATACTTAAGGCATTTGCTAGAAATATTCAAGTGATAGTTTCACGTGTAACATATAATGTTTTCAATTTCATGCTCATTTCCTACACCTCTCTATTATTTGTTGTTTTGTTGCATGCCATTCTTATGAGGCAGGCCTTTCTTCCTTTCCGTCAGTTAATTATTCTTATGAGGCAGGCCTCTCTTCCTTGCCATTTTCCCAGCAATTTGACCAATTTGTATTTTGTATAGGCACCTTTCTATTTTTCTGAGAGGAGTATGCATCCACCTTCACCATATGCCGTGAACAATCCAGCTATGGAAATGAATGCTTATATACACCGTCATAAGCATACACCAGTTGAAGAGTTTCCAGAAAGACCTGGTGAACCTGAATGCAGTTTCTTCTTAAAAACCGGGGATTGCAAATTTCATCATCCAAAGAACCGGATTACAAAATTACCTCCATGCAACCTAAGTAACAAGGGTCTGCCTTTGAGACCTGTAAGTTATTTTACTCTGATGTCACCAGTTTCTTTGATCTAACATTTAATATCTCGTGAAATTCAGGGCCAGAATGTGTGCACTCATTACAACCGATATGGAATTTGCAAATTTGGACCAGCTTGTAAGTATGACCACCCGATAAACCTACCGCCCCCAACTATGCCTGGACGTTATCAATAA
Protein sequence

>MS.gene008327.t1

MEPSQESQSHLASSHHVQHISPVSNHHPEPSDFNQLTQLDDELQNKLDLKAEDGIEEKAAVLESDKGQECHDDDDDDDDDDEKVNEKVSTDDDDEVGGIDDKGSNFEVDDEKSATVSEKGQGFHQFDDDDDDDDDGWNGDYDGWNDDNVVSDWIENEVVSGYVDERSNGGAEQYPLRPEAEDCSFYLKTGTCKFGFNCKFNHPVWRRNQVFRERAGERDELEERSSLQGIFKIMLSYSYYSRSGGCKFGKDCKFDHTRGKFSADQVLELNFLGLPIRLFNHPDPTSVGGYDSTSGYGNESSISLQDVSQSSTPPWSSTRKFNETAPFVPIIISPTPGASPRSSDWNGYQAPFYFSERSMHPPSPYAVNNPAMEMNAYIHRHKHTPVEEFPERPGEPECSFFLKTGDCKFHHPKNRITKLPPCNLSNKGLPLRPGQNVCTHYNRYGICKFGPACKYDHPINLPPPTMPGRYQ