Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008346.t1 | AES70883.2 | 94.3 | 283 | 15 | 1 | 5 | 286 | 6 | 288 | 3.50E-141 | 511.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008346.t1 | F4KGY6 | 47.3 | 281 | 110 | 4 | 15 | 284 | 4 | 257 | 2.0e-52 | 207.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008346.t1 | G7J7Y9 | 94.3 | 283 | 15 | 1 | 5 | 286 | 6 | 288 | 2.6e-141 | 511.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene008346.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008346.t1 | MTR_3g064500 | 93.031 | 287 | 19 | 1 | 1 | 286 | 2 | 288 | 0.0 | 518 |
| MS.gene008346.t1 | MTR_5g076960 | 60.000 | 285 | 104 | 5 | 18 | 293 | 4 | 287 | 7.02e-97 | 292 |
| MS.gene008346.t1 | MTR_6g477860 | 45.936 | 283 | 134 | 8 | 1 | 269 | 1 | 278 | 1.86e-51 | 176 |
| MS.gene008346.t1 | MTR_5g076960 | 52.973 | 185 | 78 | 4 | 117 | 293 | 3 | 186 | 5.09e-38 | 137 |
| MS.gene008346.t1 | MTR_1g067000 | 58.163 | 98 | 33 | 1 | 45 | 142 | 36 | 125 | 7.51e-35 | 128 |
| MS.gene008346.t1 | MTR_7g118330 | 66.990 | 103 | 32 | 1 | 37 | 137 | 7 | 109 | 4.77e-32 | 126 |
| MS.gene008346.t1 | MTR_8g028655 | 45.455 | 154 | 63 | 3 | 45 | 196 | 53 | 187 | 5.04e-32 | 122 |
| MS.gene008346.t1 | MTR_0123s0070 | 53.922 | 102 | 39 | 1 | 36 | 137 | 30 | 123 | 6.69e-31 | 117 |
| MS.gene008346.t1 | MTR_0123s0070 | 53.922 | 102 | 39 | 1 | 36 | 137 | 30 | 123 | 9.87e-31 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008346.t1 | AT5G17300 | 50.936 | 267 | 94 | 5 | 15 | 271 | 4 | 243 | 5.14e-59 | 194 |
| MS.gene008346.t1 | AT5G37260 | 46.614 | 251 | 59 | 6 | 33 | 272 | 12 | 198 | 1.21e-52 | 174 |
| MS.gene008346.t1 | AT1G18330 | 53.237 | 139 | 54 | 1 | 43 | 181 | 37 | 164 | 7.37e-35 | 130 |
| MS.gene008346.t1 | AT3G10113 | 53.237 | 139 | 54 | 1 | 43 | 181 | 52 | 179 | 8.89e-35 | 129 |
| MS.gene008346.t1 | AT1G18330 | 53.237 | 139 | 54 | 1 | 43 | 181 | 63 | 190 | 1.47e-34 | 129 |
| MS.gene008346.t1 | AT3G09600 | 56.436 | 101 | 36 | 1 | 37 | 137 | 24 | 116 | 2.46e-33 | 124 |
| MS.gene008346.t1 | AT3G09600 | 56.436 | 101 | 36 | 1 | 37 | 137 | 24 | 116 | 2.46e-33 | 124 |
| MS.gene008346.t1 | AT3G09600 | 56.436 | 101 | 36 | 1 | 37 | 137 | 24 | 116 | 2.58e-33 | 124 |
| MS.gene008346.t1 | AT3G09600 | 56.436 | 101 | 36 | 1 | 37 | 137 | 24 | 116 | 2.63e-33 | 124 |
| MS.gene008346.t1 | AT3G09600 | 56.436 | 101 | 36 | 1 | 37 | 137 | 24 | 116 | 2.63e-33 | 124 |
| MS.gene008346.t1 | AT1G01520 | 42.614 | 176 | 81 | 5 | 20 | 195 | 26 | 181 | 1.41e-32 | 121 |
| MS.gene008346.t1 | AT1G01520 | 42.614 | 176 | 81 | 5 | 20 | 195 | 26 | 181 | 1.41e-32 | 121 |
| MS.gene008346.t1 | AT1G01520 | 42.614 | 176 | 81 | 5 | 20 | 195 | 26 | 181 | 2.18e-32 | 122 |
| MS.gene008346.t1 | AT1G01520 | 42.614 | 176 | 81 | 5 | 20 | 195 | 26 | 181 | 2.52e-32 | 121 |
| MS.gene008346.t1 | AT5G02840 | 58.065 | 93 | 31 | 1 | 45 | 137 | 37 | 121 | 2.25e-31 | 118 |
| MS.gene008346.t1 | AT5G02840 | 58.065 | 93 | 31 | 1 | 45 | 137 | 37 | 121 | 2.33e-31 | 119 |
| MS.gene008346.t1 | AT5G02840 | 58.065 | 93 | 31 | 1 | 45 | 137 | 37 | 121 | 2.33e-31 | 119 |
| MS.gene008346.t1 | AT5G02840 | 58.065 | 93 | 31 | 1 | 45 | 137 | 37 | 121 | 2.37e-31 | 119 |
| MS.gene008346.t1 | AT5G02840 | 58.065 | 93 | 31 | 1 | 45 | 137 | 37 | 121 | 3.42e-31 | 119 |
| MS.gene008346.t1 | AT2G46830 | 46.970 | 198 | 85 | 7 | 37 | 221 | 5 | 195 | 4.18e-31 | 123 |
| MS.gene008346.t1 | AT4G01280 | 53.913 | 115 | 43 | 2 | 23 | 137 | 28 | 132 | 4.43e-31 | 119 |
| MS.gene008346.t1 | AT1G01060 | 58.730 | 126 | 49 | 2 | 45 | 167 | 13 | 138 | 4.50e-31 | 123 |
| MS.gene008346.t1 | AT4G01280 | 53.913 | 115 | 43 | 2 | 23 | 137 | 28 | 132 | 4.67e-31 | 119 |
| MS.gene008346.t1 | AT1G01060 | 58.730 | 126 | 49 | 2 | 45 | 167 | 13 | 138 | 4.79e-31 | 123 |
| MS.gene008346.t1 | AT1G01060 | 58.730 | 126 | 49 | 2 | 45 | 167 | 13 | 138 | 4.79e-31 | 123 |
| MS.gene008346.t1 | AT1G01060 | 58.730 | 126 | 49 | 2 | 45 | 167 | 13 | 138 | 4.79e-31 | 123 |
| MS.gene008346.t1 | AT1G01060 | 58.730 | 126 | 49 | 2 | 45 | 167 | 13 | 138 | 4.79e-31 | 123 |
| MS.gene008346.t1 | AT1G01060 | 58.730 | 126 | 49 | 2 | 45 | 167 | 13 | 138 | 4.79e-31 | 123 |
| MS.gene008346.t1 | AT5G52660 | 54.455 | 101 | 38 | 1 | 37 | 137 | 53 | 145 | 1.33e-30 | 118 |
| MS.gene008346.t1 | AT5G52660 | 54.455 | 101 | 38 | 1 | 37 | 137 | 53 | 145 | 1.44e-30 | 118 |
| MS.gene008346.t1 | AT5G17300 | 46.597 | 191 | 75 | 4 | 81 | 271 | 5 | 168 | 4.06e-24 | 100 |
| MS.gene008346.t1 | AT3G09600 | 53.125 | 64 | 22 | 1 | 74 | 137 | 5 | 60 | 2.56e-16 | 77.4 |
| MS.gene008346.t1 | AT3G09600 | 53.125 | 64 | 22 | 1 | 74 | 137 | 5 | 60 | 2.56e-16 | 77.4 |
| MS.gene008346.t1 | AT3G09600 | 53.125 | 64 | 22 | 1 | 74 | 137 | 5 | 60 | 2.81e-16 | 77.0 |
| MS.gene008346.t1 | AT3G09600 | 53.125 | 64 | 22 | 1 | 74 | 137 | 5 | 60 | 2.81e-16 | 77.0 |
Find 58 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCCGGCCATACAGCTTTA+AGG | 0.174526 | 3.1:-53895595 | None:intergenic |
| CGCGAATGATTATGCTCTTA+AGG | 0.273107 | 3.1:+53895397 | MS.gene008346:CDS |
| CTCTGTTTCGATATAGTATA+TGG | 0.282091 | 3.1:-53895531 | None:intergenic |
| AGAAATTTCAATCCCGAAAA+AGG | 0.302937 | 3.1:+53896138 | MS.gene008346:CDS |
| GGAGGAAAATTGGAACTTCT+TGG | 0.327774 | 3.1:+53896681 | MS.gene008346:CDS |
| TAGAAAGGGAGGAGGAAAAT+TGG | 0.340113 | 3.1:+53896671 | MS.gene008346:CDS |
| AGGAATTTCAATTGATTCCT+TGG | 0.346980 | 3.1:-53896047 | None:intergenic |
| AAGTGTAGATAAAACTGATT+TGG | 0.347735 | 3.1:-53896215 | None:intergenic |
| GCCTCAATTGTTGGAAAAGA+TGG | 0.348970 | 3.1:-53896622 | None:intergenic |
| TCTTACTCTTAATTGAGATA+TGG | 0.349705 | 3.1:-53896730 | None:intergenic |
| TCTGAGCATGACTTCGAATC+TGG | 0.349813 | 3.1:-53895795 | None:intergenic |
| ATAAAACTGATTTGGGAGAT+TGG | 0.361687 | 3.1:-53896207 | None:intergenic |
| TCTAACATGTATGTCATGAT+TGG | 0.376918 | 3.1:-53896652 | None:intergenic |
| CTGAGTTGAATATGAGTAAC+AGG | 0.381118 | 3.1:-53895359 | None:intergenic |
| TCAACTAGCTTGCGAGGATA+AGG | 0.387638 | 3.1:-53896100 | None:intergenic |
| TCATGATGAGAAACCTCTTC+TGG | 0.400783 | 3.1:+53896387 | MS.gene008346:CDS |
| ATCGGATGAACCAAGGCTTT+CGG | 0.424992 | 3.1:-53896242 | None:intergenic |
| GGGTGCATAGGCTTACGTTT+TGG | 0.427838 | 3.1:-53896079 | None:intergenic |
| AGTGTAGATAAAACTGATTT+GGG | 0.427868 | 3.1:-53896214 | None:intergenic |
| CTTGAAGCCTTAAAGCTGTA+TGG | 0.441266 | 3.1:+53895588 | MS.gene008346:CDS |
| TCCGTTTGGTGTATCTGAAT+CGG | 0.446379 | 3.1:-53896260 | None:intergenic |
| GGTTTGCATGCCTCAATTGT+TGG | 0.453490 | 3.1:-53896631 | None:intergenic |
| CAGGTCTGAAAACACTTGCT+TGG | 0.457820 | 3.1:-53896312 | None:intergenic |
| CAACTAGCTTGCGAGGATAA+GGG | 0.462388 | 3.1:-53896099 | None:intergenic |
| CGGGCCTGGCGACGTATTGA+AGG | 0.464802 | 3.1:+53895612 | MS.gene008346:CDS |
| TTCAAAATGTAGGATCAAGA+TGG | 0.466323 | 3.1:+53895284 | MS.gene008346:intron |
| TAAAGCTGTATGGCCGGGCC+TGG | 0.467187 | 3.1:+53895598 | MS.gene008346:CDS |
| CATACAGCTTTAAGGCTTCA+AGG | 0.472400 | 3.1:-53895587 | None:intergenic |
| TGGACACAACTAATCGATAT+CGG | 0.474217 | 3.1:-53896292 | None:intergenic |
| ATCGGAGATAAACTTCCGTT+TGG | 0.476291 | 3.1:-53896274 | None:intergenic |
| CCAGCTACATTTCCTACTGC+AGG | 0.478856 | 3.1:-53895329 | None:intergenic |
| TCATGACATACATGTTAGAA+AGG | 0.487347 | 3.1:+53896656 | MS.gene008346:CDS |
| CTTCAATACGTCGCCAGGCC+CGG | 0.487779 | 3.1:-53895611 | None:intergenic |
| AAGCCTTAAAGCTGTATGGC+CGG | 0.499730 | 3.1:+53895592 | MS.gene008346:CDS |
| AGGAAGTTAGTTACCAGAAG+AGG | 0.529786 | 3.1:-53896400 | None:intergenic |
| ACACTTGGTTCCGAAAGCCT+TGG | 0.534605 | 3.1:+53896232 | MS.gene008346:CDS |
| AGCCTAGCTTCTTCCTCTGA+TGG | 0.534831 | 3.1:-53896349 | None:intergenic |
| CATACCTTCAATACGTCGCC+AGG | 0.551422 | 3.1:-53895616 | None:intergenic |
| TATCGAAACAGAGAGAAAGA+TGG | 0.552512 | 3.1:+53895541 | MS.gene008346:CDS |
| TCCTACTGCAGGGCTAACAC+TGG | 0.552965 | 3.1:-53895318 | None:intergenic |
| AGCCTTAAAGCTGTATGGCC+GGG | 0.555613 | 3.1:+53895593 | MS.gene008346:CDS |
| CATGACATACATGTTAGAAA+GGG | 0.558691 | 3.1:+53896657 | MS.gene008346:CDS |
| CGCCATCAGAGGAAGAAGCT+AGG | 0.562418 | 3.1:+53896347 | MS.gene008346:CDS |
| TCCTCGCAAGCTAGTTGAGA+TGG | 0.569053 | 3.1:+53896105 | MS.gene008346:CDS |
| TCCGATTCAGATACACCAAA+CGG | 0.581293 | 3.1:+53896259 | MS.gene008346:CDS |
| TTGCGAGGATAAGGGTGCAT+AGG | 0.596615 | 3.1:-53896091 | None:intergenic |
| GACATACATGTTAGAAAGGG+AGG | 0.598447 | 3.1:+53896660 | MS.gene008346:CDS |
| CCTGCAGTAGGAAATGTAGC+TGG | 0.607570 | 3.1:+53895329 | MS.gene008346:CDS |
| TGAATTCAAAACGCCATCAG+AGG | 0.625902 | 3.1:+53896336 | MS.gene008346:CDS |
| CGCAAGCTAGTTGAGATGGT+CGG | 0.633361 | 3.1:+53896109 | MS.gene008346:CDS |
| ATACATGTTAGAAAGGGAGG+AGG | 0.634259 | 3.1:+53896663 | MS.gene008346:CDS |
| ACCATCTCAACTAGCTTGCG+AGG | 0.635742 | 3.1:-53896106 | None:intergenic |
| CAGCTACATTTCCTACTGCA+GGG | 0.637750 | 3.1:-53895328 | None:intergenic |
| TATCTGAATCGGATGAACCA+AGG | 0.665190 | 3.1:-53896249 | None:intergenic |
| TTTCTCGACACAGAACATGT+CGG | 0.674284 | 3.1:+53895757 | MS.gene008346:intron |
| TCCAGTGTTAGCCCTGCAGT+AGG | 0.679374 | 3.1:+53895317 | MS.gene008346:CDS |
| TGCAAGCATTACAAACACCA+AGG | 0.703682 | 3.1:+53896030 | MS.gene008346:CDS |
| ACATGTCGGTTCAAAGACTG+CGG | 0.722182 | 3.1:+53895771 | MS.gene008346:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATTAAAAAATATAA+AGG | - | chr3.1:53893847-53893866 | None:intergenic | 0.0% |
| !! | TAAATAATGGTATAATTATA+GGG | + | chr3.1:53894073-53894092 | MS.gene008346:intron | 10.0% |
| !! | TTAAAAATAAAAATCATGTT+TGG | - | chr3.1:53894498-53894517 | None:intergenic | 10.0% |
| !! | TTAAATAATGGTATAATTAT+AGG | + | chr3.1:53894072-53894091 | MS.gene008346:intron | 10.0% |
| !!! | AAAAAACAGTTTTTTTTTTA+AGG | - | chr3.1:53893587-53893606 | None:intergenic | 10.0% |
| !!! | AAATTTTCTATTTTTTTTAG+GGG | - | chr3.1:53894356-53894375 | None:intergenic | 10.0% |
| !!! | ACAAATTTTCTATTTTTTTT+AGG | - | chr3.1:53894358-53894377 | None:intergenic | 10.0% |
| !!! | CAAATTTTCTATTTTTTTTA+GGG | - | chr3.1:53894357-53894376 | None:intergenic | 10.0% |
| !!! | GAATATTAAATTTTCATAAT+TGG | + | chr3.1:53895454-53895473 | MS.gene008346:intron | 10.0% |
| !!! | TTAATAAAATTTTCTAGAAA+TGG | + | chr3.1:53893856-53893875 | MS.gene008346:intron | 10.0% |
| !! | AAAGTTTAGATAAGTAAAAT+TGG | + | chr3.1:53893688-53893707 | MS.gene008346:intron | 15.0% |
| !!! | AAAAACTTAATGAGTATTTT+AGG | - | chr3.1:53893768-53893787 | None:intergenic | 15.0% |
| !!! | AAAAAGTAAGTATTTTTTGA+CGG | - | chr3.1:53893621-53893640 | None:intergenic | 15.0% |
| !!! | AATAATATTGAGATTTTTGT+GGG | - | chr3.1:53894690-53894709 | None:intergenic | 15.0% |
| !!! | ATAGTTTTGTTTATAGTTTA+TGG | - | chr3.1:53895861-53895880 | None:intergenic | 15.0% |
| !!! | ATATTGTCATAATTTTTTAG+AGG | + | chr3.1:53894012-53894031 | MS.gene008346:intron | 15.0% |
| !!! | ATTTTTCTATTTCAAAATGT+AGG | + | chr3.1:53895274-53895293 | MS.gene008346:intron | 15.0% |
| !!! | TAATAATATTGAGATTTTTG+TGG | - | chr3.1:53894691-53894710 | None:intergenic | 15.0% |
| !!! | TTTTTCATAAAATAAGTTAG+CGG | - | chr3.1:53894131-53894150 | None:intergenic | 15.0% |
| !! | ACAAGGAAATTAATTAATGA+AGG | + | chr3.1:53895678-53895697 | MS.gene008346:intron | 20.0% |
| !! | AGCAAAAATTATACAATGAA+AGG | - | chr3.1:53895076-53895095 | None:intergenic | 20.0% |
| !! | GGAGAACTAAAATTAAATAA+TGG | + | chr3.1:53894060-53894079 | MS.gene008346:intron | 20.0% |
| !! | TAATTGTGAATAAGATGAAA+TGG | - | chr3.1:53896429-53896448 | None:intergenic | 20.0% |
| !! | TAGAAATGTTGAATTGAAAA+GGG | - | chr3.1:53894648-53894667 | None:intergenic | 20.0% |
| !! | TTAGAAATGTTGAATTGAAA+AGG | - | chr3.1:53894649-53894668 | None:intergenic | 20.0% |
| !!! | AAAAGTATGGATTAATTTCA+TGG | - | chr3.1:53893812-53893831 | None:intergenic | 20.0% |
| !!! | AAACTATGTTTAGATTTTGA+TGG | + | chr3.1:53895874-53895893 | MS.gene008346:intron | 20.0% |
| !!! | AAATACTTCTTTGAAATCAA+AGG | - | chr3.1:53895012-53895031 | None:intergenic | 20.0% |
| !!! | AATTTTCTTTGTACTTCAAT+AGG | + | chr3.1:53895500-53895519 | MS.gene008346:intron | 20.0% |
| !!! | AGAACTTGATTCTAAAAATA+TGG | + | chr3.1:53894456-53894475 | MS.gene008346:intron | 20.0% |
| !!! | GTTTGAAATTTCCATTTATT+AGG | + | chr3.1:53895643-53895662 | MS.gene008346:intron | 20.0% |
| !!! | TAAAAAATAATCCTTGCTTT+TGG | + | chr3.1:53894545-53894564 | MS.gene008346:intron | 20.0% |
| !!! | TGATTTGGTATAATTGATTT+TGG | + | chr3.1:53894413-53894432 | MS.gene008346:intron | 20.0% |
| ! | AAAACAATATGCAGTACTTA+GGG | + | chr3.1:53895048-53895067 | MS.gene008346:intron | 25.0% |
| ! | AAGTGTAGATAAAACTGATT+TGG | - | chr3.1:53896218-53896237 | None:intergenic | 25.0% |
| ! | ACTTAACTTAGATATCCTAT+AGG | - | chr3.1:53895901-53895920 | None:intergenic | 25.0% |
| ! | AGCTATACTTTCCTAATAAA+TGG | - | chr3.1:53895657-53895676 | None:intergenic | 25.0% |
| ! | ATTTCATGGATGAAAAATGT+TGG | - | chr3.1:53893798-53893817 | None:intergenic | 25.0% |
| ! | CTTAACTTAGATATCCTATA+GGG | - | chr3.1:53895900-53895919 | None:intergenic | 25.0% |
| ! | GATGACTAAAATCAAATGTT+GGG | - | chr3.1:53893746-53893765 | None:intergenic | 25.0% |
| ! | TAAATGATTTCTGATCTAGT+AGG | + | chr3.1:53895184-53895203 | MS.gene008346:intron | 25.0% |
| ! | TCAAATGTTGGGTATATTTA+AGG | - | chr3.1:53893735-53893754 | None:intergenic | 25.0% |
| ! | TCACTTAGAAAAAGTTTGAA+GGG | + | chr3.1:53894976-53894995 | MS.gene008346:intron | 25.0% |
| ! | TGGAAATTGCAAAATTGATT+TGG | + | chr3.1:53894398-53894417 | MS.gene008346:intron | 25.0% |
| ! | TTCACTTAGAAAAAGTTTGA+AGG | + | chr3.1:53894975-53894994 | MS.gene008346:intron | 25.0% |
| ! | TTGGTCCTTAAAAAAGTAAA+TGG | + | chr3.1:53893707-53893726 | MS.gene008346:intron | 25.0% |
| ! | TTTATAGAACACTTAGATTG+TGG | + | chr3.1:53893502-53893521 | MS.gene008346:intron | 25.0% |
| !! | AGTGTAGATAAAACTGATTT+GGG | - | chr3.1:53896217-53896236 | None:intergenic | 25.0% |
| !! | GTCAAACTCTTAAACTTTTT+GGG | + | chr3.1:53896569-53896588 | MS.gene008346:CDS | 25.0% |
| !! | TCAATTTTGCAATTTCCAAA+AGG | - | chr3.1:53894396-53894415 | None:intergenic | 25.0% |
| !! | TGAATAAGATGAAATGGATT+AGG | - | chr3.1:53896423-53896442 | None:intergenic | 25.0% |
| !!! | AAATCAGTTTTATCTACACT+TGG | + | chr3.1:53896217-53896236 | MS.gene008346:CDS | 25.0% |
| !!! | AGGAACCATTTACTTTTTTA+AGG | - | chr3.1:53893715-53893734 | None:intergenic | 25.0% |
| !!! | TCTCATATGTCTTTTTTTGT+TGG | - | chr3.1:53894273-53894292 | None:intergenic | 25.0% |
| ACATCATACATGTATTCATG+TGG | + | chr3.1:53895112-53895131 | MS.gene008346:intron | 30.0% | |
| ACTTAACATAGGCTTAGAAA+TGG | + | chr3.1:53894900-53894919 | MS.gene008346:intron | 30.0% | |
| AGAAATTTCAATCCCGAAAA+AGG | + | chr3.1:53896138-53896157 | MS.gene008346:CDS | 30.0% | |
| CAAAACAATATGCAGTACTT+AGG | + | chr3.1:53895047-53895066 | MS.gene008346:intron | 30.0% | |
| CATGACATACATGTTAGAAA+GGG | + | chr3.1:53896657-53896676 | MS.gene008346:CDS | 30.0% | |
| CTCTGTTTCGATATAGTATA+TGG | - | chr3.1:53895534-53895553 | None:intergenic | 30.0% | |
| GGATGACTAAAATCAAATGT+TGG | - | chr3.1:53893747-53893766 | None:intergenic | 30.0% | |
| GTTAGACTGACTAAAAAGTA+TGG | - | chr3.1:53893825-53893844 | None:intergenic | 30.0% | |
| TCATGACATACATGTTAGAA+AGG | + | chr3.1:53896656-53896675 | MS.gene008346:CDS | 30.0% | |
| TCTAACATGTATGTCATGAT+TGG | - | chr3.1:53896655-53896674 | None:intergenic | 30.0% | |
| TTCAAAATGTAGGATCAAGA+TGG | + | chr3.1:53895284-53895303 | MS.gene008346:intron | 30.0% | |
| ! | AAAAGCCTGAGGAATATTTT+AGG | + | chr3.1:53894039-53894058 | MS.gene008346:intron | 30.0% |
| ! | AGGAATTTCAATTGATTCCT+TGG | - | chr3.1:53896050-53896069 | None:intergenic | 30.0% |
| ! | ATTTTGCAATTTCCAAAAGG+TGG | - | chr3.1:53894393-53894412 | None:intergenic | 30.0% |
| ! | CGTCAAACTCTTAAACTTTT+TGG | + | chr3.1:53896568-53896587 | MS.gene008346:CDS | 30.0% |
| ! | GCAACTTATTTGAGATAGAA+GGG | + | chr3.1:53895929-53895948 | MS.gene008346:intron | 30.0% |
| ! | TGAAGGAGTATGATTAATGA+AGG | + | chr3.1:53895695-53895714 | MS.gene008346:intron | 30.0% |
| ! | TGCAACTTATTTGAGATAGA+AGG | + | chr3.1:53895928-53895947 | MS.gene008346:intron | 30.0% |
| ! | TGTCTATAGGTGTAGTTTTT+AGG | - | chr3.1:53894163-53894182 | None:intergenic | 30.0% |
| ! | TTAGAGTTCATTGCCTTTTT+CGG | - | chr3.1:53896154-53896173 | None:intergenic | 30.0% |
| ! | TTAGGAAAGTATAGCTAACA+AGG | + | chr3.1:53895661-53895680 | MS.gene008346:intron | 30.0% |
| !! | AAGTACTGCATATTGTTTTG+AGG | - | chr3.1:53895047-53895066 | None:intergenic | 30.0% |
| !! | ATAAAACTGATTTGGGAGAT+TGG | - | chr3.1:53896210-53896229 | None:intergenic | 30.0% |
| !! | TATAGGTGTAGTTTTTAGGA+TGG | - | chr3.1:53894159-53894178 | None:intergenic | 30.0% |
| !! | TTTTGGTACTGAAATGGATA+TGG | + | chr3.1:53894562-53894581 | MS.gene008346:intron | 30.0% |
| !!! | AGTACTGCATATTGTTTTGA+GGG | - | chr3.1:53895046-53895065 | None:intergenic | 30.0% |
| !!! | GTATTTTTTGTTCCACCTTT+TGG | + | chr3.1:53894378-53894397 | MS.gene008346:intron | 30.0% |
| ACACCTATAGACATAGACAT+AGG | + | chr3.1:53894170-53894189 | MS.gene008346:intron | 35.0% | |
| ATAGGAGATCTTGTCTTTGT+TGG | + | chr3.1:53894188-53894207 | MS.gene008346:intron | 35.0% | |
| ATTAAACACACTTTCTCTGC+GGG | - | chr3.1:53894741-53894760 | None:intergenic | 35.0% | |
| CAGAAATCATTTATCCACCA+AGG | - | chr3.1:53895177-53895196 | None:intergenic | 35.0% | |
| CATAATATATGCAAGGTTCG+AGG | + | chr3.1:53894235-53894254 | MS.gene008346:intron | 35.0% | |
| CATGGATGAAAAATGTTGGA+TGG | - | chr3.1:53893794-53893813 | None:intergenic | 35.0% | |
| CATTAAACACACTTTCTCTG+CGG | - | chr3.1:53894742-53894761 | None:intergenic | 35.0% | |
| CTGTTATGGAATCAAGACAA+AGG | - | chr3.1:53895993-53896012 | None:intergenic | 35.0% | |
| CTTTGTCTTGATTCCATAAC+AGG | + | chr3.1:53895991-53896010 | MS.gene008346:intron | 35.0% | |
| GACAGTGCATAATATATGCA+AGG | + | chr3.1:53894228-53894247 | MS.gene008346:intron | 35.0% | |
| GTAGCTAAACTCTCATCATT+GGG | + | chr3.1:53894823-53894842 | MS.gene008346:intron | 35.0% | |
| GTTCTCCTAAAATATTCCTC+AGG | - | chr3.1:53894047-53894066 | None:intergenic | 35.0% | |
| TACAGAGATGAATGATTCCT+TGG | + | chr3.1:53895157-53895176 | MS.gene008346:intron | 35.0% | |
| TAGCTAAACTCTCATCATTG+GGG | + | chr3.1:53894824-53894843 | MS.gene008346:intron | 35.0% | |
| TATCGAAACAGAGAGAAAGA+TGG | + | chr3.1:53895541-53895560 | MS.gene008346:CDS | 35.0% | |
| TCTCCTATGTCTATGTCTAT+AGG | - | chr3.1:53894176-53894195 | None:intergenic | 35.0% | |
| TCTTTGTACTTCAATAGGCA+AGG | + | chr3.1:53895505-53895524 | MS.gene008346:intron | 35.0% | |
| TGGACACAACTAATCGATAT+CGG | - | chr3.1:53896295-53896314 | None:intergenic | 35.0% | |
| TGTAGCTAAACTCTCATCAT+TGG | + | chr3.1:53894822-53894841 | MS.gene008346:intron | 35.0% | |
| TTAGCGGCACAATTTCTTTA+GGG | - | chr3.1:53894115-53894134 | None:intergenic | 35.0% | |
| ! | ACCATCTTTTCCAACAATTG+AGG | + | chr3.1:53896621-53896640 | MS.gene008346:CDS | 35.0% |
| ! | CAGAAGCTTTGGTACATAAT+AGG | - | chr3.1:53894804-53894823 | None:intergenic | 35.0% |
| ! | CTGAGTTGAATATGAGTAAC+AGG | - | chr3.1:53895362-53895381 | None:intergenic | 35.0% |
| ! | TAGAGTTCATTGCCTTTTTC+GGG | - | chr3.1:53896153-53896172 | None:intergenic | 35.0% |
| ! | TGCTCAGAAGTTTTTCTCTA+AGG | + | chr3.1:53895810-53895829 | MS.gene008346:CDS | 35.0% |
| !! | TTAGATTTTGATGGCCCTAT+AGG | + | chr3.1:53895883-53895902 | MS.gene008346:intron | 35.0% |
| !! | TTTCTCTAAGGTCTATTCTC+AGG | + | chr3.1:53895822-53895841 | MS.gene008346:intron | 35.0% |
| !!! | GTACTGCATATTGTTTTGAG+GGG | - | chr3.1:53895045-53895064 | None:intergenic | 35.0% |
| AAGCTTGTACAACTTGTAGC+TGG | + | chr3.1:53894321-53894340 | MS.gene008346:intron | 40.0% | |
| AGAGATGAATGATTCCTTGG+TGG | + | chr3.1:53895160-53895179 | MS.gene008346:intron | 40.0% | |
| AGCTAAACTCTCATCATTGG+GGG | + | chr3.1:53894825-53894844 | MS.gene008346:intron | 40.0% | |
| AGGAAGTTAGTTACCAGAAG+AGG | - | chr3.1:53896403-53896422 | None:intergenic | 40.0% | |
| ATACATGTTAGAAAGGGAGG+AGG | + | chr3.1:53896663-53896682 | MS.gene008346:CDS | 40.0% | |
| ATCGGAGATAAACTTCCGTT+TGG | - | chr3.1:53896277-53896296 | None:intergenic | 40.0% | |
| CACAAGTACTATTCACTTGG+AGG | + | chr3.1:53894776-53894795 | MS.gene008346:intron | 40.0% | |
| CCATTTCAGTACCAAAAGCA+AGG | - | chr3.1:53894559-53894578 | None:intergenic | 40.0% | |
| CGCGAATGATTATGCTCTTA+AGG | + | chr3.1:53895397-53895416 | MS.gene008346:CDS | 40.0% | |
| CTCCAAGTGAATAGTACTTG+TGG | - | chr3.1:53894778-53894797 | None:intergenic | 40.0% | |
| CTCCACAAGTACTATTCACT+TGG | + | chr3.1:53894773-53894792 | MS.gene008346:intron | 40.0% | |
| CTTGAAGCCTTAAAGCTGTA+TGG | + | chr3.1:53895588-53895607 | MS.gene008346:CDS | 40.0% | |
| GACATACATGTTAGAAAGGG+AGG | + | chr3.1:53896660-53896679 | MS.gene008346:CDS | 40.0% | |
| GAGTTTAGCTACAGAAGCTT+TGG | - | chr3.1:53894815-53894834 | None:intergenic | 40.0% | |
| GCCTCAATTGTTGGAAAAGA+TGG | - | chr3.1:53896625-53896644 | None:intergenic | 40.0% | |
| GGAGGAAAATTGGAACTTCT+TGG | + | chr3.1:53896681-53896700 | MS.gene008346:CDS | 40.0% | |
| GTGAATAGTACTTGTGGAGT+AGG | - | chr3.1:53894772-53894791 | None:intergenic | 40.0% | |
| GTTAGCGGCACAATTTCTTT+AGG | - | chr3.1:53894116-53894135 | None:intergenic | 40.0% | |
| TAGAAAGGGAGGAGGAAAAT+TGG | + | chr3.1:53896671-53896690 | MS.gene008346:CDS | 40.0% | |
| TATCTGAATCGGATGAACCA+AGG | - | chr3.1:53896252-53896271 | None:intergenic | 40.0% | |
| TATGCTCTTAAGGTTCGCTA+TGG | + | chr3.1:53895407-53895426 | MS.gene008346:intron | 40.0% | |
| TCATGATGAGAAACCTCTTC+TGG | + | chr3.1:53896387-53896406 | MS.gene008346:CDS | 40.0% | |
| TCCGATTCAGATACACCAAA+CGG | + | chr3.1:53896259-53896278 | MS.gene008346:CDS | 40.0% | |
| TCTGATCTAGTAGGCTCTTA+AGG | + | chr3.1:53895193-53895212 | MS.gene008346:intron | 40.0% | |
| TGAATTCAAAACGCCATCAG+AGG | + | chr3.1:53896336-53896355 | MS.gene008346:CDS | 40.0% | |
| TGCAAGCATTACAAACACCA+AGG | + | chr3.1:53896030-53896049 | MS.gene008346:CDS | 40.0% | |
| TTAGAGGAATCAAAAGCCTG+AGG | + | chr3.1:53894028-53894047 | MS.gene008346:intron | 40.0% | |
| TTTCTCGACACAGAACATGT+CGG | + | chr3.1:53895757-53895776 | MS.gene008346:intron | 40.0% | |
| ! | CATGTATTCATGTGGTGATG+TGG | + | chr3.1:53895120-53895139 | MS.gene008346:intron | 40.0% |
| ! | TATTCATGTGGTGATGTGGA+GGG | + | chr3.1:53895124-53895143 | MS.gene008346:intron | 40.0% |
| ! | TGAAGGAGTATGATTGTGCT+TGG | + | chr3.1:53895712-53895731 | MS.gene008346:intron | 40.0% |
| !! | ATAGGCTTACGTTTTGGTCT+AGG | - | chr3.1:53896076-53896095 | None:intergenic | 40.0% |
| !! | CATACAGCTTTAAGGCTTCA+AGG | - | chr3.1:53895590-53895609 | None:intergenic | 40.0% |
| !! | CCTTGCTTTTGGTACTGAAA+TGG | + | chr3.1:53894556-53894575 | MS.gene008346:intron | 40.0% |
| !! | CTTTGTTGGCTTAACTCAGT+TGG | + | chr3.1:53894202-53894221 | MS.gene008346:intron | 40.0% |
| !! | TCCGTTTGGTGTATCTGAAT+CGG | - | chr3.1:53896263-53896282 | None:intergenic | 40.0% |
| !!! | ATGTCTTTTTTTGTTGGCCG+AGG | - | chr3.1:53894267-53894286 | None:intergenic | 40.0% |
| AAGCCTTAAAGCTGTATGGC+CGG | + | chr3.1:53895592-53895611 | MS.gene008346:CDS | 45.0% | |
| AAGGTTCGAGGTTGAAACCT+CGG | + | chr3.1:53894247-53894266 | MS.gene008346:intron | 45.0% | |
| ACCCAACACGCACTTAACAT+AGG | + | chr3.1:53894889-53894908 | MS.gene008346:intron | 45.0% | |
| AGCCTATGTTAAGTGCGTGT+TGG | - | chr3.1:53894894-53894913 | None:intergenic | 45.0% | |
| ATCGGATGAACCAAGGCTTT+CGG | - | chr3.1:53896245-53896264 | None:intergenic | 45.0% | |
| CAGCTACATTTCCTACTGCA+GGG | - | chr3.1:53895331-53895350 | None:intergenic | 45.0% | |
| CAGGTCTGAAAACACTTGCT+TGG | - | chr3.1:53896315-53896334 | None:intergenic | 45.0% | |
| CTAGCGATAAGATCAAGTGC+AGG | - | chr3.1:53896485-53896504 | None:intergenic | 45.0% | |
| GCCTATGTTAAGTGCGTGTT+GGG | - | chr3.1:53894893-53894912 | None:intergenic | 45.0% | |
| GGTTTGCATGCCTCAATTGT+TGG | - | chr3.1:53896634-53896653 | None:intergenic | 45.0% | |
| GTGTTGCGAAGAACCTGTTA+TGG | - | chr3.1:53896007-53896026 | None:intergenic | 45.0% | |
| TCTGAGCATGACTTCGAATC+TGG | - | chr3.1:53895798-53895817 | None:intergenic | 45.0% | |
| ! | CAACTAGCTTGCGAGGATAA+GGG | - | chr3.1:53896102-53896121 | None:intergenic | 45.0% |
| ! | GTATTCATGTGGTGATGTGG+AGG | + | chr3.1:53895123-53895142 | MS.gene008346:intron | 45.0% |
| ! | GTTGGCTTAACTCAGTTGGT+AGG | + | chr3.1:53894206-53894225 | MS.gene008346:intron | 45.0% |
| ! | TAAGTGCGTGTTGGGTTTTG+CGG | - | chr3.1:53894885-53894904 | None:intergenic | 45.0% |
| ! | TCAACTAGCTTGCGAGGATA+AGG | - | chr3.1:53896103-53896122 | None:intergenic | 45.0% |
| !! | ACATGTCGGTTCAAAGACTG+CGG | + | chr3.1:53895771-53895790 | MS.gene008346:CDS | 45.0% |
| !! | GATGGCGTTTTGAATTCAGC+AGG | - | chr3.1:53896334-53896353 | None:intergenic | 45.0% |
| !! | TTACGTTTTGGTCTAGGAGG+AGG | - | chr3.1:53896070-53896089 | None:intergenic | 45.0% |
| !!! | GTTAAAAAAATTATAATTTT+TGG | + | chr3.1:53893986-53894005 | MS.gene008346:intron | 5.0% |
| ACACTTGGTTCCGAAAGCCT+TGG | + | chr3.1:53896232-53896251 | MS.gene008346:CDS | 50.0% | |
| AGCCTAGCTTCTTCCTCTGA+TGG | - | chr3.1:53896352-53896371 | None:intergenic | 50.0% | |
| AGCCTTAAAGCTGTATGGCC+GGG | + | chr3.1:53895593-53895612 | MS.gene008346:CDS | 50.0% | |
| CATACCTTCAATACGTCGCC+AGG | - | chr3.1:53895619-53895638 | None:intergenic | 50.0% | |
| CCAGCTACATTTCCTACTGC+AGG | - | chr3.1:53895332-53895351 | None:intergenic | 50.0% | |
| CCTGCAGTAGGAAATGTAGC+TGG | + | chr3.1:53895329-53895348 | MS.gene008346:CDS | 50.0% | |
| CGCAAGCTAGTTGAGATGGT+CGG | + | chr3.1:53896109-53896128 | MS.gene008346:CDS | 50.0% | |
| CTGGCGACGTATTGAAGGTA+TGG | + | chr3.1:53895617-53895636 | MS.gene008346:intron | 50.0% | |
| TCCTCGCAAGCTAGTTGAGA+TGG | + | chr3.1:53896105-53896124 | MS.gene008346:CDS | 50.0% | |
| ! | ACCATCTCAACTAGCTTGCG+AGG | - | chr3.1:53896109-53896128 | None:intergenic | 50.0% |
| ! | CGACGTATTGAAGGTATGGC+TGG | + | chr3.1:53895621-53895640 | MS.gene008346:intron | 50.0% |
| ! | GGGTGCATAGGCTTACGTTT+TGG | - | chr3.1:53896082-53896101 | None:intergenic | 50.0% |
| ! | TTGCGAGGATAAGGGTGCAT+AGG | - | chr3.1:53896094-53896113 | None:intergenic | 50.0% |
| !! | GGCTTACGTTTTGGTCTAGG+AGG | - | chr3.1:53896073-53896092 | None:intergenic | 50.0% |
| CGCCATCAGAGGAAGAAGCT+AGG | + | chr3.1:53896347-53896366 | MS.gene008346:CDS | 55.0% | |
| TCCAGTGTTAGCCCTGCAGT+AGG | + | chr3.1:53895317-53895336 | MS.gene008346:CDS | 55.0% | |
| TCCTACTGCAGGGCTAACAC+TGG | - | chr3.1:53895321-53895340 | None:intergenic | 55.0% | |
| CTTCAATACGTCGCCAGGCC+CGG | - | chr3.1:53895614-53895633 | None:intergenic | 60.0% | |
| GGCCCGGCCATACAGCTTTA+AGG | - | chr3.1:53895598-53895617 | None:intergenic | 60.0% | |
| TAAAGCTGTATGGCCGGGCC+TGG | + | chr3.1:53895598-53895617 | MS.gene008346:CDS | 60.0% | |
| CGGGCCTGGCGACGTATTGA+AGG | + | chr3.1:53895612-53895631 | MS.gene008346:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 53893420 | 53896744 | 53893420 | ID=MS.gene008346 |
| chr3.1 | mRNA | 53893420 | 53896744 | 53893420 | ID=MS.gene008346.t1;Parent=MS.gene008346 |
| chr3.1 | exon | 53893420 | 53893431 | 53893420 | ID=MS.gene008346.t1.exon1;Parent=MS.gene008346.t1 |
| chr3.1 | CDS | 53893420 | 53893431 | 53893420 | ID=cds.MS.gene008346.t1;Parent=MS.gene008346.t1 |
| chr3.1 | exon | 53895296 | 53895418 | 53895296 | ID=MS.gene008346.t1.exon2;Parent=MS.gene008346.t1 |
| chr3.1 | CDS | 53895296 | 53895418 | 53895296 | ID=cds.MS.gene008346.t1;Parent=MS.gene008346.t1 |
| chr3.1 | exon | 53895522 | 53895633 | 53895522 | ID=MS.gene008346.t1.exon3;Parent=MS.gene008346.t1 |
| chr3.1 | CDS | 53895522 | 53895633 | 53895522 | ID=cds.MS.gene008346.t1;Parent=MS.gene008346.t1 |
| chr3.1 | exon | 53895770 | 53895831 | 53895770 | ID=MS.gene008346.t1.exon4;Parent=MS.gene008346.t1 |
| chr3.1 | CDS | 53895770 | 53895831 | 53895770 | ID=cds.MS.gene008346.t1;Parent=MS.gene008346.t1 |
| chr3.1 | exon | 53896013 | 53896408 | 53896013 | ID=MS.gene008346.t1.exon5;Parent=MS.gene008346.t1 |
| chr3.1 | CDS | 53896013 | 53896408 | 53896013 | ID=cds.MS.gene008346.t1;Parent=MS.gene008346.t1 |
| chr3.1 | exon | 53896505 | 53896744 | 53896505 | ID=MS.gene008346.t1.exon6;Parent=MS.gene008346.t1 |
| chr3.1 | CDS | 53896505 | 53896744 | 53896505 | ID=cds.MS.gene008346.t1;Parent=MS.gene008346.t1 |
| Gene Sequence |
| Protein sequence |
