Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008458.t1 | XP_013460465.1 | 96.9 | 911 | 28 | 0 | 1 | 911 | 1 | 911 | 0.00E+00 | 1763.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008458.t1 | Q8W4L5 | 50.0 | 778 | 299 | 19 | 1 | 770 | 6 | 701 | 2.1e-182 | 641.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008458.t1 | A0A072UZF3 | 96.9 | 911 | 28 | 0 | 1 | 911 | 1 | 911 | 0.0e+00 | 1763.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene008458.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008458.t1 | MTR_3g467380 | 96.926 | 911 | 28 | 0 | 1 | 911 | 1 | 911 | 0.0 | 1829 |
| MS.gene008458.t1 | MTR_5g075410 | 54.286 | 840 | 314 | 14 | 1 | 832 | 1 | 778 | 0.0 | 819 |
| MS.gene008458.t1 | MTR_4g028130 | 48.330 | 898 | 411 | 16 | 16 | 894 | 19 | 882 | 0.0 | 785 |
| MS.gene008458.t1 | MTR_4g028130 | 47.339 | 902 | 378 | 18 | 16 | 894 | 19 | 846 | 0.0 | 756 |
| MS.gene008458.t1 | MTR_4g028130 | 50.691 | 651 | 284 | 10 | 16 | 661 | 19 | 637 | 0.0 | 613 |
| MS.gene008458.t1 | MTR_2g011940 | 42.553 | 846 | 381 | 20 | 17 | 828 | 34 | 808 | 0.0 | 574 |
| MS.gene008458.t1 | MTR_2g011940 | 41.692 | 662 | 301 | 14 | 17 | 660 | 43 | 637 | 7.57e-146 | 447 |
| MS.gene008458.t1 | MTR_2g011940 | 41.692 | 662 | 301 | 14 | 17 | 660 | 43 | 637 | 1.59e-145 | 446 |
| MS.gene008458.t1 | MTR_7g073240 | 41.149 | 435 | 175 | 11 | 218 | 648 | 2 | 359 | 1.40e-93 | 300 |
| MS.gene008458.t1 | MTR_7g083700 | 40.777 | 103 | 60 | 1 | 338 | 439 | 126 | 228 | 1.80e-18 | 87.8 |
| MS.gene008458.t1 | MTR_7g059330 | 37.255 | 102 | 62 | 2 | 338 | 437 | 623 | 724 | 6.93e-16 | 82.8 |
| MS.gene008458.t1 | MTR_1g058350 | 36.364 | 165 | 80 | 9 | 319 | 469 | 54 | 207 | 7.42e-14 | 74.3 |
| MS.gene008458.t1 | MTR_7g117455 | 40.659 | 91 | 49 | 3 | 338 | 425 | 117 | 205 | 7.52e-13 | 72.4 |
| MS.gene008458.t1 | MTR_5g053920 | 35.345 | 116 | 61 | 4 | 338 | 441 | 194 | 307 | 1.13e-12 | 71.2 |
| MS.gene008458.t1 | MTR_8g023990 | 38.462 | 91 | 51 | 3 | 338 | 425 | 171 | 259 | 3.04e-12 | 70.5 |
| MS.gene008458.t1 | MTR_7g105370 | 35.338 | 133 | 79 | 5 | 343 | 471 | 65 | 194 | 5.20e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008458.t1 | AT2G30470 | 47.929 | 845 | 328 | 22 | 1 | 836 | 6 | 747 | 0.0 | 679 |
| MS.gene008458.t1 | AT4G32010 | 48.404 | 752 | 280 | 18 | 15 | 761 | 20 | 668 | 0.0 | 649 |
| MS.gene008458.t1 | AT4G32010 | 48.148 | 756 | 280 | 19 | 15 | 761 | 20 | 672 | 0.0 | 645 |
| MS.gene008458.t1 | AT4G21550 | 39.655 | 290 | 117 | 6 | 307 | 593 | 294 | 528 | 7.09e-55 | 200 |
| MS.gene008458.t1 | AT4G21550 | 39.535 | 86 | 39 | 1 | 17 | 102 | 31 | 103 | 5.54e-14 | 76.3 |
| MS.gene008458.t1 | AT4G21550 | 39.604 | 303 | 126 | 6 | 307 | 607 | 294 | 541 | 9.12e-51 | 191 |
| MS.gene008458.t1 | AT4G21550 | 39.535 | 86 | 39 | 1 | 17 | 102 | 31 | 103 | 2.03e-14 | 78.2 |
| MS.gene008458.t1 | AT4G21550 | 33.775 | 151 | 79 | 4 | 682 | 831 | 528 | 658 | 2.04e-11 | 68.6 |
| MS.gene008458.t1 | AT4G21550 | 39.051 | 274 | 110 | 6 | 307 | 578 | 294 | 512 | 3.81e-50 | 186 |
| MS.gene008458.t1 | AT4G21550 | 39.535 | 86 | 39 | 1 | 17 | 102 | 31 | 103 | 2.98e-14 | 77.0 |
| MS.gene008458.t1 | AT3G26790 | 42.308 | 104 | 59 | 1 | 338 | 440 | 91 | 194 | 4.85e-20 | 92.4 |
| MS.gene008458.t1 | AT3G24650 | 39.216 | 102 | 60 | 2 | 338 | 437 | 571 | 672 | 5.39e-16 | 83.2 |
| MS.gene008458.t1 | AT1G13260 | 39.091 | 110 | 60 | 4 | 338 | 442 | 187 | 294 | 1.74e-14 | 76.3 |
| MS.gene008458.t1 | AT2G36080 | 39.815 | 108 | 56 | 4 | 338 | 438 | 37 | 142 | 3.01e-14 | 72.0 |
| MS.gene008458.t1 | AT2G36080 | 39.815 | 108 | 56 | 4 | 338 | 438 | 37 | 142 | 3.01e-14 | 72.0 |
| MS.gene008458.t1 | AT1G28300 | 43.023 | 86 | 48 | 1 | 338 | 422 | 170 | 255 | 3.41e-14 | 75.9 |
| MS.gene008458.t1 | AT2G36080 | 39.815 | 108 | 56 | 4 | 338 | 438 | 37 | 142 | 6.84e-14 | 72.8 |
| MS.gene008458.t1 | AT1G68840 | 41.935 | 93 | 47 | 3 | 338 | 425 | 187 | 277 | 1.54e-13 | 73.6 |
| MS.gene008458.t1 | AT1G68840 | 41.935 | 93 | 47 | 3 | 338 | 425 | 187 | 277 | 1.54e-13 | 73.6 |
| MS.gene008458.t1 | AT4G01500 | 41.573 | 89 | 49 | 2 | 338 | 425 | 35 | 121 | 1.76e-13 | 73.2 |
| MS.gene008458.t1 | AT2G36080 | 39.815 | 108 | 56 | 4 | 338 | 438 | 37 | 142 | 5.22e-13 | 70.1 |
| MS.gene008458.t1 | AT5G06250 | 30.049 | 203 | 114 | 8 | 327 | 510 | 37 | 230 | 7.09e-13 | 70.5 |
| MS.gene008458.t1 | AT5G06250 | 30.049 | 203 | 114 | 8 | 327 | 510 | 37 | 230 | 8.12e-13 | 70.1 |
| MS.gene008458.t1 | AT5G06250 | 32.877 | 146 | 79 | 5 | 327 | 458 | 37 | 177 | 8.19e-13 | 70.1 |
| MS.gene008458.t1 | AT5G06250 | 30.049 | 203 | 114 | 8 | 327 | 510 | 37 | 230 | 8.87e-13 | 70.5 |
| MS.gene008458.t1 | AT5G06250 | 32.877 | 146 | 79 | 5 | 327 | 458 | 37 | 177 | 1.01e-12 | 70.1 |
| MS.gene008458.t1 | AT3G61970 | 39.362 | 94 | 49 | 3 | 338 | 425 | 22 | 113 | 1.21e-12 | 70.1 |
| MS.gene008458.t1 | AT2G46870 | 39.560 | 91 | 50 | 3 | 338 | 425 | 34 | 122 | 1.42e-12 | 70.1 |
| MS.gene008458.t1 | AT1G01030 | 39.560 | 91 | 50 | 3 | 338 | 425 | 55 | 143 | 6.62e-12 | 68.6 |
| MS.gene008458.t1 | AT1G01030 | 39.560 | 91 | 50 | 3 | 338 | 425 | 55 | 143 | 7.10e-12 | 68.6 |
| MS.gene008458.t1 | AT3G11580 | 38.235 | 102 | 47 | 3 | 338 | 425 | 28 | 127 | 2.28e-11 | 65.1 |
| MS.gene008458.t1 | AT3G11580 | 38.235 | 102 | 47 | 3 | 338 | 425 | 28 | 127 | 2.28e-11 | 65.1 |
| MS.gene008458.t1 | AT3G11580 | 38.235 | 102 | 47 | 3 | 338 | 425 | 28 | 127 | 2.28e-11 | 65.1 |
Find 252 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATATCCCTTGCATTATTT+TGG | 0.089803 | 3.3:+56181269 | None:intergenic |
| TTCTTGTCATACTAGATTTA+TGG | 0.159659 | 3.3:-56183517 | MS.gene008458:intron |
| CGGTTCTTGGACCGCCGTTT+TGG | 0.233976 | 3.3:+56177015 | None:intergenic |
| AAAAGTAAGAGATTGCTTAT+TGG | 0.238596 | 3.3:-56179006 | MS.gene008458:CDS |
| CAAACCTCAGCACAGGCTTT+TGG | 0.248819 | 3.3:+56180072 | None:intergenic |
| ATGAATATAGAAACTGAAAA+AGG | 0.252818 | 3.3:-56180788 | MS.gene008458:CDS |
| AACAACATGATTACATCTAA+TGG | 0.257026 | 3.3:-56181130 | MS.gene008458:CDS |
| GGACATGTTCCGAAAATATC+TGG | 0.259191 | 3.3:-56177920 | MS.gene008458:CDS |
| TCTGACATTGGTATGGTAAA+TGG | 0.260179 | 3.3:-56184305 | MS.gene008458:CDS |
| GAACCTTCACATTTGGTTAC+TGG | 0.267943 | 3.3:-56179135 | MS.gene008458:CDS |
| ATCAGTTACTTCCTAGATAT+TGG | 0.275669 | 3.3:-56180712 | MS.gene008458:CDS |
| GATGTAATCATGTTGTTTAT+CGG | 0.277647 | 3.3:+56181136 | None:intergenic |
| CAAAACTTAGTGATCATATA+TGG | 0.286035 | 3.3:-56177055 | MS.gene008458:CDS |
| TCTACGTCGGCACTTTCTAA+TGG | 0.291457 | 3.3:-56179279 | MS.gene008458:CDS |
| AGCCAGAAGGCTCGTGTTCT+TGG | 0.294965 | 3.3:+56177525 | None:intergenic |
| CTCTGAAGGTCTTCCTTTGC+GGG | 0.296256 | 3.3:-56179866 | MS.gene008458:CDS |
| GGAAGGTCAACATTCTTCTT+TGG | 0.296343 | 3.3:-56176976 | MS.gene008458:CDS |
| TACATCCTGCTGTTGTTATT+AGG | 0.296564 | 3.3:+56179796 | None:intergenic |
| GGCCCTGCTGATTCCGCAGC+TGG | 0.302776 | 3.3:-56177458 | MS.gene008458:CDS |
| TTCTCCTAAAACGGCTAAAC+TGG | 0.304782 | 3.3:+56177490 | None:intergenic |
| TATCTTGACTTCGGCGGTAT+TGG | 0.305982 | 3.3:-56182536 | MS.gene008458:CDS |
| GGTTTGCTTAAAGCCGAAAA+TGG | 0.307447 | 3.3:-56179105 | MS.gene008458:CDS |
| GTCGATGAAACGGGCCATTT+AGG | 0.307880 | 3.3:+56181292 | None:intergenic |
| ATTTCAGTATTAACGGTTCT+TGG | 0.327294 | 3.3:+56177002 | None:intergenic |
| TAGATATTGGCCTAGGATTA+CGG | 0.327990 | 3.3:-56180699 | MS.gene008458:CDS |
| TATTGGTAATGATGATTCTA+TGG | 0.330411 | 3.3:-56178989 | MS.gene008458:CDS |
| GTAATACTGAAAATCCTAAA+TGG | 0.335624 | 3.3:-56181306 | MS.gene008458:CDS |
| GCCGTCTTTGAATATGTGTT+TGG | 0.340861 | 3.3:-56180954 | MS.gene008458:CDS |
| CAGAAAGATCATACCTTTGC+TGG | 0.342586 | 3.3:+56177720 | None:intergenic |
| TCTTTGGCCACTCAATCTAA+TGG | 0.347543 | 3.3:-56176960 | MS.gene008458:CDS |
| ATCCAAGAACACGAGCCTTC+TGG | 0.347833 | 3.3:-56177527 | MS.gene008458:CDS |
| CTCTAAATGGAGAAAGTTAC+CGG | 0.350506 | 3.3:-56177967 | MS.gene008458:CDS |
| ATATTCAGCGCCTCTTCATC+TGG | 0.353236 | 3.3:-56178712 | MS.gene008458:CDS |
| AAGGCCGGTCTTTAACAGTT+TGG | 0.353568 | 3.3:+56180814 | None:intergenic |
| AAATACTTCCCAACTAAATA+TGG | 0.354913 | 3.3:-56182498 | MS.gene008458:intron |
| AAGAAGTTAGGCCGTCATTC+AGG | 0.358196 | 3.3:-56181096 | MS.gene008458:CDS |
| ATTCATTACCCTTCACATCT+TGG | 0.362672 | 3.3:+56179842 | None:intergenic |
| TTCCTGCATTTCAGTATTAA+CGG | 0.365173 | 3.3:+56176995 | None:intergenic |
| CAGGAGCTGGAGCGTTTGTC+TGG | 0.368698 | 3.3:-56180674 | MS.gene008458:CDS |
| AATGTGATGATTGCTCTAAA+TGG | 0.377625 | 3.3:-56177980 | MS.gene008458:CDS |
| GTTTCTTCTTGCGTAACATA+AGG | 0.379395 | 3.3:+56177300 | None:intergenic |
| AAGAAGAGGACTCGAAATAT+TGG | 0.381088 | 3.3:-56179033 | MS.gene008458:CDS |
| AGGCCGGTCTTTAACAGTTT+GGG | 0.381417 | 3.3:+56180815 | None:intergenic |
| TCCGTTCACCAAATGGTAAC+GGG | 0.384737 | 3.3:-56179182 | MS.gene008458:CDS |
| ACATCCTGAACCTTCACATT+TGG | 0.390011 | 3.3:-56179142 | MS.gene008458:CDS |
| GCTCCAGCTGCGGAATCAGC+AGG | 0.391479 | 3.3:+56177455 | None:intergenic |
| TCATTCAGGGAAGGGGATAC+TGG | 0.395233 | 3.3:-56181082 | MS.gene008458:CDS |
| CGAAGTTCCCCGTTACCATT+TGG | 0.395408 | 3.3:+56179174 | None:intergenic |
| CCGTCTTTGAATATGTGTTT+GGG | 0.395837 | 3.3:-56180953 | MS.gene008458:CDS |
| ACAACATGATTACATCTAAT+GGG | 0.396289 | 3.3:-56181129 | MS.gene008458:CDS |
| AAGAGAAGTTGCGAATCCTT+TGG | 0.400555 | 3.3:-56177189 | MS.gene008458:CDS |
| ACTTGCGAGTCATCGCGATT+TGG | 0.401458 | 3.3:+56177089 | None:intergenic |
| GATTTACGTGCTGGTGATAC+TGG | 0.406488 | 3.3:-56179736 | MS.gene008458:intron |
| ACTCTGAAGGTCTTCCTTTG+CGG | 0.407452 | 3.3:-56179867 | MS.gene008458:CDS |
| TCTTTCTTTGTTCCCAACAT+TGG | 0.407495 | 3.3:+56176896 | None:intergenic |
| TTCTCTTGATGCTCCACCAT+TGG | 0.412635 | 3.3:+56177205 | None:intergenic |
| TTATCGGAGCATGACTCATA+TGG | 0.413523 | 3.3:+56181152 | None:intergenic |
| TTTAACAGTTTGGGAAGTAT+AGG | 0.414755 | 3.3:+56180824 | None:intergenic |
| TCCTCAATTGTGACAATGCT+TGG | 0.418148 | 3.3:+56178907 | None:intergenic |
| TACATTTAGTAGGATAGATC+CGG | 0.419925 | 3.3:-56179472 | MS.gene008458:CDS |
| CCACGTATTGCTCGGCCTCC+TGG | 0.420064 | 3.3:-56180752 | MS.gene008458:CDS |
| GACAATGCTTGGCTTGACAC+TGG | 0.420212 | 3.3:+56178918 | None:intergenic |
| AACGGGGAACTTCGCTCAAA+TGG | 0.422522 | 3.3:-56179165 | MS.gene008458:CDS |
| TTAAACTTACCATATTTAGT+TGG | 0.425360 | 3.3:+56182489 | None:intergenic |
| ATGTGTTTGGGAAACCCGTC+AGG | 0.426949 | 3.3:-56180941 | MS.gene008458:CDS |
| GTAACCAAATGTGAAGGTTC+AGG | 0.430266 | 3.3:+56179138 | None:intergenic |
| CTCAACTTTGCTTCAAGTGC+GGG | 0.431608 | 3.3:-56184229 | MS.gene008458:intron |
| TCCCTTGAGCTCAGCTCGTC+CGG | 0.431790 | 3.3:+56177763 | None:intergenic |
| ATTGCTCGGCCTCCTGGTGA+TGG | 0.435069 | 3.3:-56180746 | MS.gene008458:CDS |
| CATTTGGTTACTGGAGCTGC+TGG | 0.436882 | 3.3:-56179126 | MS.gene008458:CDS |
| ATTCTCATTTCCACCAGAAA+AGG | 0.447087 | 3.3:+56179236 | None:intergenic |
| TCGGCCTCCTGGTGATGGGA+GGG | 0.451096 | 3.3:-56180741 | MS.gene008458:CDS |
| ACCAATCCGACCTGCATCAC+TGG | 0.451773 | 3.3:+56180107 | None:intergenic |
| GGGTGTGACCCCTTGTATAC+AGG | 0.451818 | 3.3:-56179764 | MS.gene008458:CDS |
| TTTCTTCTTGCGTAACATAA+GGG | 0.452338 | 3.3:+56177301 | None:intergenic |
| AACAACTCTTTCCCACCATC+TGG | 0.452851 | 3.3:-56180917 | MS.gene008458:CDS |
| CGGCCTCCTGGTGATGGGAG+GGG | 0.454483 | 3.3:-56180740 | MS.gene008458:CDS |
| TAAACTTACCATATTTAGTT+GGG | 0.454535 | 3.3:+56182490 | None:intergenic |
| GCAAAAGTTAATGACTGAAC+AGG | 0.455178 | 3.3:+56181037 | None:intergenic |
| TTCTAATGGCGGTTCGGCAA+AGG | 0.457309 | 3.3:-56179265 | MS.gene008458:CDS |
| AAATCCATGGCCTGTATACA+AGG | 0.462450 | 3.3:+56179754 | None:intergenic |
| TTCTATATTCATGGTAAGGC+CGG | 0.462900 | 3.3:+56180799 | None:intergenic |
| AAATTCCATCGTCAACAAAC+TGG | 0.467730 | 3.3:-56182721 | MS.gene008458:CDS |
| CAGTTTCTATATTCATGGTA+AGG | 0.468963 | 3.3:+56180795 | None:intergenic |
| CTCGGCCTCCTGGTGATGGG+AGG | 0.470919 | 3.3:-56180742 | MS.gene008458:CDS |
| TCTAATGGCGGTTCGGCAAA+GGG | 0.472103 | 3.3:-56179264 | MS.gene008458:CDS |
| AAAGGGTGGGGTTTACGATC+TGG | 0.472704 | 3.3:-56184260 | MS.gene008458:CDS |
| TAGGATTACGGACCAGGAGC+TGG | 0.472738 | 3.3:-56180687 | MS.gene008458:CDS |
| GAGCAGCCGGGACGGTGTCT+AGG | 0.474417 | 3.3:+56177419 | None:intergenic |
| AAGATCTATCTTTCCAGCGC+TGG | 0.475080 | 3.3:+56177121 | None:intergenic |
| GATGCATTGCATCCAATGTT+GGG | 0.477504 | 3.3:-56176908 | MS.gene008458:CDS |
| GGAAAGAGTTGTTCCCTGAC+GGG | 0.480170 | 3.3:+56180927 | None:intergenic |
| GGCACTTTCTAATGGCGGTT+CGG | 0.480503 | 3.3:-56179271 | MS.gene008458:CDS |
| ATTCAGCCACCAAGCGGAAA+AGG | 0.481360 | 3.3:-56177383 | MS.gene008458:CDS |
| GATCTTCTCCGTTCACCAAA+TGG | 0.483108 | 3.3:-56179189 | MS.gene008458:CDS |
| CTATGGAGTTGAGACTTACA+TGG | 0.484609 | 3.3:-56178972 | MS.gene008458:CDS |
| AGAAGTTAGGCCGTCATTCA+GGG | 0.485967 | 3.3:-56181095 | MS.gene008458:CDS |
| CCTTCAGAGTGTGTAATATG+AGG | 0.486209 | 3.3:+56179880 | None:intergenic |
| AATAGAGGTCAAGTCGAGAT+TGG | 0.486621 | 3.3:-56177149 | MS.gene008458:CDS |
| CTTGGCTTGACACTGGGCGG+TGG | 0.487076 | 3.3:+56178925 | None:intergenic |
| CCCCGTTACCATTTGGTGAA+CGG | 0.487521 | 3.3:+56179181 | None:intergenic |
| CAACAGCAGGATGTACGTAT+TGG | 0.488320 | 3.3:-56179788 | MS.gene008458:CDS |
| GTGCTGAGTGCCAGTGATGC+AGG | 0.488585 | 3.3:-56180117 | MS.gene008458:CDS |
| TAAATAGGATGCTTCTACGT+CGG | 0.490089 | 3.3:-56179292 | MS.gene008458:intron |
| TACTTCCTAGATATTGGCCT+AGG | 0.490891 | 3.3:-56180706 | MS.gene008458:CDS |
| CATCTGCTTCACGCTCCGAT+TGG | 0.494722 | 3.3:+56177276 | None:intergenic |
| CACCGGACGAGCTGAGCTCA+AGG | 0.494872 | 3.3:-56177765 | MS.gene008458:CDS |
| CAGACAAACGCTCCAGCTCC+TGG | 0.495028 | 3.3:+56180675 | None:intergenic |
| AACCGTTAATACTGAAATGC+AGG | 0.496893 | 3.3:-56176997 | MS.gene008458:CDS |
| ATTCAGCTTTAGAGAAGAAG+AGG | 0.500319 | 3.3:-56179047 | MS.gene008458:CDS |
| ATCCAGGGCGAAGGAACAAT+GGG | 0.500688 | 3.3:-56178006 | MS.gene008458:intron |
| ATGGTTCGTGTGTTCATGAA+TGG | 0.503991 | 3.3:-56184286 | MS.gene008458:CDS |
| CTCAGCACCTTCTCAAACAA+TGG | 0.504763 | 3.3:+56180132 | None:intergenic |
| GGGAAAGAGTTGTTCCCTGA+CGG | 0.506096 | 3.3:+56180926 | None:intergenic |
| AAAACTTAGTGATCATATAT+GGG | 0.507990 | 3.3:-56177054 | MS.gene008458:CDS |
| TTGCTCGGCCTCCTGGTGAT+GGG | 0.511113 | 3.3:-56180745 | MS.gene008458:CDS |
| TTCTTACCCCTCCCATCACC+AGG | 0.513704 | 3.3:+56180734 | None:intergenic |
| ACTACAGACGGAAGACTTGA+GGG | 0.517542 | 3.3:-56180887 | MS.gene008458:CDS |
| GATCTCGGCCCTTGATGAAA+GGG | 0.518190 | 3.3:+56180851 | None:intergenic |
| GCCAGTGATGCAGGTCGGAT+TGG | 0.520413 | 3.3:-56180108 | MS.gene008458:CDS |
| CATGAATGGAAGAAAGGGTG+GGG | 0.520502 | 3.3:-56184272 | MS.gene008458:CDS |
| GTAATCCTAGGCCAATATCT+AGG | 0.520534 | 3.3:+56180701 | None:intergenic |
| GACCATTTCATCCAGGGCGA+AGG | 0.524834 | 3.3:-56178015 | MS.gene008458:intron |
| GAGATTGGCGAGTCCAGCGC+TGG | 0.525035 | 3.3:-56177134 | MS.gene008458:CDS |
| TTTGGCCTAATAACAACAGC+AGG | 0.525991 | 3.3:-56179801 | MS.gene008458:CDS |
| TTGGCCTAGGATTACGGACC+AGG | 0.525994 | 3.3:-56180693 | MS.gene008458:CDS |
| ACAATGCTTGGCTTGACACT+GGG | 0.526210 | 3.3:+56178919 | None:intergenic |
| ACACACAATACAAGAGCAGC+CGG | 0.526462 | 3.3:+56177406 | None:intergenic |
| ATGCTCTTCTTCCTCCCAAG+TGG | 0.528369 | 3.3:-56177941 | MS.gene008458:CDS |
| AGAAAATAATAGACCAGCAT+GGG | 0.528624 | 3.3:-56181008 | MS.gene008458:CDS |
| AAGATGTGAAGGGTAATGAA+TGG | 0.530191 | 3.3:-56179840 | MS.gene008458:CDS |
| GATGATGAGCAATAATTCAC+TGG | 0.530716 | 3.3:-56179079 | MS.gene008458:CDS |
| AGATGCATTGCATCCAATGT+TGG | 0.530925 | 3.3:-56176909 | MS.gene008458:CDS |
| CATCCAGGGCGAAGGAACAA+TGG | 0.531506 | 3.3:-56178007 | MS.gene008458:intron |
| ACATTTAGTAGGATAGATCC+GGG | 0.532476 | 3.3:-56179471 | MS.gene008458:CDS |
| GCCAAGCATTGTCACAATTG+AGG | 0.533228 | 3.3:-56178908 | MS.gene008458:CDS |
| TTCATGAATGGAAGAAAGGG+TGG | 0.533771 | 3.3:-56184274 | MS.gene008458:CDS |
| AACGAAGGAGGACTAAATAG+AGG | 0.534232 | 3.3:-56177164 | MS.gene008458:CDS |
| GGATGCAATGCATCTTTCAT+CGG | 0.534582 | 3.3:+56176917 | None:intergenic |
| AGCTCCTGGTCCGTAATCCT+AGG | 0.537010 | 3.3:+56180689 | None:intergenic |
| ACGGTGTCTAGGATGTTTAG+TGG | 0.537419 | 3.3:+56177430 | None:intergenic |
| TTTCTCAACCACGTATTGCT+CGG | 0.537803 | 3.3:-56180760 | MS.gene008458:CDS |
| ATCAAATTCCGTGGATACAC+AGG | 0.537929 | 3.3:-56179418 | MS.gene008458:intron |
| AGATCTCGGCCCTTGATGAA+AGG | 0.538168 | 3.3:+56180850 | None:intergenic |
| CTCCGTTCACCAAATGGTAA+CGG | 0.539360 | 3.3:-56179183 | MS.gene008458:CDS |
| GACCCCTTGTATACAGGCCA+TGG | 0.540366 | 3.3:-56179758 | MS.gene008458:CDS |
| TTTATGAGTAATGTTGATGA+AGG | 0.541550 | 3.3:-56181220 | MS.gene008458:CDS |
| CATATTAATATGAACCAAAA+CGG | 0.542766 | 3.3:-56177029 | MS.gene008458:CDS |
| CAGCAGGATGTACGTATTGG+AGG | 0.545399 | 3.3:-56179785 | MS.gene008458:CDS |
| AAAATATCTGGGATTCAAGC+AGG | 0.545642 | 3.3:-56177908 | MS.gene008458:intron |
| ACGCAAGAAGAAACGCCAAT+CGG | 0.545936 | 3.3:-56177291 | MS.gene008458:CDS |
| CAGGCCATGGATTTACGTGC+TGG | 0.546070 | 3.3:-56179745 | MS.gene008458:CDS |
| GACTACAGACGGAAGACTTG+AGG | 0.549307 | 3.3:-56180888 | MS.gene008458:CDS |
| ATACTAGATTTATGGAGGAA+TGG | 0.549883 | 3.3:-56183509 | MS.gene008458:intron |
| GGAAATGAGAATCTTCCATC+GGG | 0.550758 | 3.3:-56179225 | MS.gene008458:CDS |
| GTATCTCCTCCCTTTCATCA+AGG | 0.552113 | 3.3:-56180860 | MS.gene008458:CDS |
| GGAGGAAGAAGAGCATCAAC+CGG | 0.553613 | 3.3:+56177948 | None:intergenic |
| GTTATACTTACAATGTGTCA+AGG | 0.561809 | 3.3:+56183475 | None:intergenic |
| AACTCTTTCCCACCATCTGG+TGG | 0.563581 | 3.3:-56180914 | MS.gene008458:CDS |
| CATCGACCCAAAATAATGCA+AGG | 0.564184 | 3.3:-56181276 | MS.gene008458:CDS |
| GACATGTTCCGAAAATATCT+GGG | 0.564644 | 3.3:-56177919 | MS.gene008458:CDS |
| GCCAACCAGTTTGTTGACGA+TGG | 0.565303 | 3.3:+56182716 | None:intergenic |
| TGTGTTCATGAATGGAAGAA+AGG | 0.567539 | 3.3:-56184278 | MS.gene008458:CDS |
| TATTCAGCGCCTCTTCATCT+GGG | 0.569422 | 3.3:-56178711 | MS.gene008458:intron |
| CCTCATATTACACACTCTGA+AGG | 0.570324 | 3.3:-56179880 | MS.gene008458:CDS |
| TGATTGATGGGTTCTGACAT+TGG | 0.570447 | 3.3:-56184317 | None:intergenic |
| ATCCTCACCATTAGATTGAG+TGG | 0.573526 | 3.3:+56176953 | None:intergenic |
| TCTGTAGTCTCTCCACCAGA+TGG | 0.577437 | 3.3:+56180902 | None:intergenic |
| TCATGAATGGAAGAAAGGGT+GGG | 0.579128 | 3.3:-56184273 | MS.gene008458:CDS |
| GATGGGTTCTGACATTGGTA+TGG | 0.579449 | 3.3:-56184312 | MS.gene008458:CDS |
| GCACTCTTACCCAGATGAAG+AGG | 0.579841 | 3.3:+56178702 | None:intergenic |
| TAGAAAATAATAGACCAGCA+TGG | 0.580283 | 3.3:-56181009 | MS.gene008458:CDS |
| CAGATCTTCATGTTCCGCAC+CGG | 0.581032 | 3.3:-56177782 | MS.gene008458:CDS |
| ACTACGCATCCACTGTGGAT+AGG | 0.582032 | 3.3:+56182578 | None:intergenic |
| GAACAAAGAAAGAAGAGATG+AGG | 0.583288 | 3.3:-56176886 | MS.gene008458:CDS |
| GGAAGTATAGGACGAGATCT+CGG | 0.585045 | 3.3:+56180836 | None:intergenic |
| AGTAGTGCCATTGTTTGAGA+AGG | 0.585604 | 3.3:-56180139 | MS.gene008458:CDS |
| TATCTCCTCCCTTTCATCAA+GGG | 0.585643 | 3.3:-56180859 | MS.gene008458:CDS |
| TAGGCCGTCATTCAGGGAAG+GGG | 0.586518 | 3.3:-56181089 | MS.gene008458:CDS |
| TTCACATCTTGGACCCGCAA+AGG | 0.587006 | 3.3:+56179853 | None:intergenic |
| TTTATGGAGGAATGGAAGAG+TGG | 0.587962 | 3.3:-56183501 | MS.gene008458:CDS |
| CTATAAACAAACCTCAGCAC+AGG | 0.588044 | 3.3:+56180065 | None:intergenic |
| GCTCAACTTTGCTTCAAGTG+CGG | 0.588515 | 3.3:-56184230 | MS.gene008458:CDS |
| TTTGCGGGTCCAAGATGTGA+AGG | 0.588681 | 3.3:-56179851 | MS.gene008458:CDS |
| TCTCCCAAAAGCCTGTGCTG+AGG | 0.589766 | 3.3:-56180076 | MS.gene008458:intron |
| TTAGGCCGTCATTCAGGGAA+GGG | 0.591509 | 3.3:-56181090 | MS.gene008458:CDS |
| CACACGTTGCAAGTACATGT+TGG | 0.591884 | 3.3:+56177350 | None:intergenic |
| CTTCCCAAACTGTTAAAGAC+CGG | 0.592604 | 3.3:-56180818 | MS.gene008458:CDS |
| TCCATCGTCAACAAACTGGT+TGG | 0.594004 | 3.3:-56182717 | MS.gene008458:CDS |
| CCCAAACACATATTCAAAGA+CGG | 0.594377 | 3.3:+56180953 | None:intergenic |
| GTAGTCTCTCCACCAGATGG+TGG | 0.595253 | 3.3:+56180905 | None:intergenic |
| CAGAAAGTCATCAAATTCCG+TGG | 0.595689 | 3.3:-56179427 | MS.gene008458:CDS |
| TTGTCATACTAGATTTATGG+AGG | 0.596953 | 3.3:-56183514 | MS.gene008458:intron |
| AAATCGCGATGACTCGCAAG+TGG | 0.598065 | 3.3:-56177087 | MS.gene008458:CDS |
| TCGGAACATGTCCACTTGGG+AGG | 0.598691 | 3.3:+56177930 | None:intergenic |
| ATTTGGTGAACGGAGAAGAT+CGG | 0.599027 | 3.3:+56179191 | None:intergenic |
| GTGTTCATGAATGGAAGAAA+GGG | 0.600298 | 3.3:-56184277 | MS.gene008458:CDS |
| ATCACCAGCACGTAAATCCA+TGG | 0.602400 | 3.3:+56179741 | None:intergenic |
| CTCCAGCTGCGGAATCAGCA+GGG | 0.603654 | 3.3:+56177456 | None:intergenic |
| ATCGACCCAAAATAATGCAA+GGG | 0.604714 | 3.3:-56181275 | MS.gene008458:CDS |
| TTTAGTGGTGGCTCCAGCTG+CGG | 0.605089 | 3.3:+56177445 | None:intergenic |
| AAACATCCTAGACACCGTCC+CGG | 0.605642 | 3.3:-56177425 | MS.gene008458:CDS |
| CTGTTCGAGTATCTTGACTT+CGG | 0.606779 | 3.3:-56182545 | MS.gene008458:CDS |
| GTTAGGCCGTCATTCAGGGA+AGG | 0.607605 | 3.3:-56181091 | MS.gene008458:CDS |
| AGTGAAAAGAATCTGTCTTG+AGG | 0.609919 | 3.3:-56176843 | None:intergenic |
| TGGAAATGAGAATCTTCCAT+CGG | 0.610250 | 3.3:-56179226 | MS.gene008458:CDS |
| ACGTCGGCACTTTCTAATGG+CGG | 0.615688 | 3.3:-56179276 | MS.gene008458:CDS |
| TAGTCTCTCCACCAGATGGT+GGG | 0.617495 | 3.3:+56180906 | None:intergenic |
| ACCGGACGAGCTGAGCTCAA+GGG | 0.618173 | 3.3:-56177764 | MS.gene008458:CDS |
| GGCCACTCAATCTAATGGTG+AGG | 0.620775 | 3.3:-56176955 | MS.gene008458:CDS |
| TGAGCTCAGCTCGTCCGGTG+CGG | 0.620796 | 3.3:+56177768 | None:intergenic |
| AGCAGGATGTACGTATTGGA+GGG | 0.621631 | 3.3:-56179784 | MS.gene008458:CDS |
| CTCGGCCCTTGATGAAAGGG+AGG | 0.622138 | 3.3:+56180854 | None:intergenic |
| ATTTAGTAGGATAGATCCGG+GGG | 0.624093 | 3.3:-56179469 | MS.gene008458:CDS |
| TATGGAGTTGAGACTTACAT+GGG | 0.625949 | 3.3:-56178971 | MS.gene008458:CDS |
| GCGAATCCTTTGGAAAACGA+AGG | 0.630328 | 3.3:-56177179 | MS.gene008458:CDS |
| CATTTAGTAGGATAGATCCG+GGG | 0.631939 | 3.3:-56179470 | MS.gene008458:CDS |
| CAATACAAGAGCAGCCGGGA+CGG | 0.639112 | 3.3:+56177411 | None:intergenic |
| GCGAGAGCGTCTAAGCCAGA+AGG | 0.639894 | 3.3:+56177512 | None:intergenic |
| GGGTGGGGTTTACGATCTGG+TGG | 0.639993 | 3.3:-56184257 | MS.gene008458:CDS |
| ATCCATGGCCTGTATACAAG+GGG | 0.641805 | 3.3:+56179756 | None:intergenic |
| CCAGGAGGCCGAGCAATACG+TGG | 0.643456 | 3.3:+56180752 | None:intergenic |
| TTCGAGTATCTTGACTTCGG+CGG | 0.643639 | 3.3:-56182542 | MS.gene008458:CDS |
| TCGGCACAATTACTTCCCGA+TGG | 0.647760 | 3.3:+56179210 | None:intergenic |
| AATCCTTTGGAAAACGAAGG+AGG | 0.647862 | 3.3:-56177176 | MS.gene008458:CDS |
| TGTGTACTACTGTGAAGCGT+CGG | 0.649541 | 3.3:-56177331 | MS.gene008458:CDS |
| AATCCATGGCCTGTATACAA+GGG | 0.649731 | 3.3:+56179755 | None:intergenic |
| ATGCTTGGCTTGACACTGGG+CGG | 0.650343 | 3.3:+56178922 | None:intergenic |
| GTATCCCCTTCCCTGAATGA+CGG | 0.651045 | 3.3:+56181085 | None:intergenic |
| AAAGTTAATGACTGAACAGG+CGG | 0.651260 | 3.3:+56181040 | None:intergenic |
| CACACAATACAAGAGCAGCC+GGG | 0.651554 | 3.3:+56177407 | None:intergenic |
| CAGTCCGCTGTCAAAATGAG+CGG | 0.652887 | 3.3:+56181243 | None:intergenic |
| AGAGTGTAACATTTGCAACA+AGG | 0.654770 | 3.3:-56182692 | MS.gene008458:intron |
| GCTCCAGTAACCAAATGTGA+AGG | 0.655029 | 3.3:+56179132 | None:intergenic |
| GACGAGTTAGACACCAATGG+TGG | 0.655577 | 3.3:-56177218 | MS.gene008458:CDS |
| GTGTCTAGGATGTTTAGTGG+TGG | 0.658966 | 3.3:+56177433 | None:intergenic |
| CTCAAACAATGGCACTACTG+TGG | 0.661874 | 3.3:+56180143 | None:intergenic |
| GTTAATACTGAAATGCAGGA+AGG | 0.667799 | 3.3:-56176993 | MS.gene008458:CDS |
| GTGACCAACCTGTGTATCCA+CGG | 0.670147 | 3.3:+56179410 | None:intergenic |
| TCTGGTGGAGAGACTACAGA+CGG | 0.671314 | 3.3:-56180899 | MS.gene008458:CDS |
| TGTGTTTGGGAAACCCGTCA+GGG | 0.671474 | 3.3:-56180940 | MS.gene008458:CDS |
| GCATGCATGAATCAAATGCG+AGG | 0.672254 | 3.3:-56180976 | MS.gene008458:CDS |
| CCGTTCACCAAATGGTAACG+GGG | 0.672434 | 3.3:-56179181 | MS.gene008458:CDS |
| TTGCGGGTCCAAGATGTGAA+GGG | 0.674468 | 3.3:-56179850 | MS.gene008458:CDS |
| GTGTGTATTCAGCCACCAAG+CGG | 0.679152 | 3.3:-56177389 | MS.gene008458:CDS |
| GTTCTGCAGCCTATCCACAG+TGG | 0.681151 | 3.3:-56182587 | MS.gene008458:intron |
| TGAGTGCCAGTGATGCAGGT+CGG | 0.705207 | 3.3:-56180113 | MS.gene008458:CDS |
| GTTGACGAGTTAGACACCAA+TGG | 0.709107 | 3.3:-56177221 | MS.gene008458:CDS |
| ATTAATATGAACCAAAACGG+CGG | 0.727119 | 3.3:-56177026 | MS.gene008458:CDS |
| TTACCCCTCCCATCACCAGG+AGG | 0.730237 | 3.3:+56180737 | None:intergenic |
| TAGATACTACGCATCCACTG+TGG | 0.761062 | 3.3:+56182573 | None:intergenic |
| TTTAGTAGGATAGATCCGGG+GGG | 0.818063 | 3.3:-56179468 | MS.gene008458:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 56176845 | 56184333 | 56176845 | ID=MS.gene008458 |
| chr3.3 | mRNA | 56176845 | 56184333 | 56176845 | ID=MS.gene008458.t1;Parent=MS.gene008458 |
| chr3.3 | exon | 56184230 | 56184333 | 56184230 | ID=MS.gene008458.t1.exon1;Parent=MS.gene008458.t1 |
| chr3.3 | CDS | 56184230 | 56184333 | 56184230 | ID=cds.MS.gene008458.t1;Parent=MS.gene008458.t1 |
| chr3.3 | exon | 56183486 | 56183524 | 56183486 | ID=MS.gene008458.t1.exon2;Parent=MS.gene008458.t1 |
| chr3.3 | CDS | 56183486 | 56183524 | 56183486 | ID=cds.MS.gene008458.t1;Parent=MS.gene008458.t1 |
| chr3.3 | exon | 56182693 | 56182774 | 56182693 | ID=MS.gene008458.t1.exon3;Parent=MS.gene008458.t1 |
| chr3.3 | CDS | 56182693 | 56182774 | 56182693 | ID=cds.MS.gene008458.t1;Parent=MS.gene008458.t1 |
| chr3.3 | exon | 56182499 | 56182600 | 56182499 | ID=MS.gene008458.t1.exon4;Parent=MS.gene008458.t1 |
| chr3.3 | CDS | 56182499 | 56182600 | 56182499 | ID=cds.MS.gene008458.t1;Parent=MS.gene008458.t1 |
| chr3.3 | exon | 56180671 | 56181332 | 56180671 | ID=MS.gene008458.t1.exon5;Parent=MS.gene008458.t1 |
| chr3.3 | CDS | 56180671 | 56181332 | 56180671 | ID=cds.MS.gene008458.t1;Parent=MS.gene008458.t1 |
| chr3.3 | exon | 56180077 | 56180173 | 56180077 | ID=MS.gene008458.t1.exon6;Parent=MS.gene008458.t1 |
| chr3.3 | CDS | 56180077 | 56180173 | 56180077 | ID=cds.MS.gene008458.t1;Parent=MS.gene008458.t1 |
| chr3.3 | exon | 56179737 | 56179911 | 56179737 | ID=MS.gene008458.t1.exon7;Parent=MS.gene008458.t1 |
| chr3.3 | CDS | 56179737 | 56179911 | 56179737 | ID=cds.MS.gene008458.t1;Parent=MS.gene008458.t1 |
| chr3.3 | exon | 56179419 | 56179495 | 56179419 | ID=MS.gene008458.t1.exon8;Parent=MS.gene008458.t1 |
| chr3.3 | CDS | 56179419 | 56179495 | 56179419 | ID=cds.MS.gene008458.t1;Parent=MS.gene008458.t1 |
| chr3.3 | exon | 56178885 | 56179307 | 56178885 | ID=MS.gene008458.t1.exon9;Parent=MS.gene008458.t1 |
| chr3.3 | CDS | 56178885 | 56179307 | 56178885 | ID=cds.MS.gene008458.t1;Parent=MS.gene008458.t1 |
| chr3.3 | exon | 56178712 | 56178761 | 56178712 | ID=MS.gene008458.t1.exon10;Parent=MS.gene008458.t1 |
| chr3.3 | CDS | 56178712 | 56178761 | 56178712 | ID=cds.MS.gene008458.t1;Parent=MS.gene008458.t1 |
| chr3.3 | exon | 56177909 | 56178022 | 56177909 | ID=MS.gene008458.t1.exon11;Parent=MS.gene008458.t1 |
| chr3.3 | CDS | 56177909 | 56178022 | 56177909 | ID=cds.MS.gene008458.t1;Parent=MS.gene008458.t1 |
| chr3.3 | exon | 56177734 | 56177801 | 56177734 | ID=MS.gene008458.t1.exon12;Parent=MS.gene008458.t1 |
| chr3.3 | CDS | 56177734 | 56177801 | 56177734 | ID=cds.MS.gene008458.t1;Parent=MS.gene008458.t1 |
| chr3.3 | exon | 56176845 | 56177587 | 56176845 | ID=MS.gene008458.t1.exon13;Parent=MS.gene008458.t1 |
| chr3.3 | CDS | 56176845 | 56177587 | 56176845 | ID=cds.MS.gene008458.t1;Parent=MS.gene008458.t1 |
| Gene Sequence |
| Protein sequence |