Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008480.t1 | XP_013460447.1 | 84.4 | 377 | 53 | 2 | 1 | 371 | 1 | 377 | 1.10E-144 | 523.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008480.t1 | Q6S4P4 | 43.4 | 346 | 157 | 8 | 34 | 371 | 15 | 329 | 5.0e-58 | 226.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008480.t1 | A0A072V8H4 | 84.4 | 377 | 53 | 2 | 1 | 371 | 1 | 377 | 7.7e-145 | 523.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene008480.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008480.t1 | MTR_3g467120 | 94.960 | 377 | 13 | 2 | 1 | 371 | 1 | 377 | 0.0 | 731 |
| MS.gene008480.t1 | MTR_5g075390 | 71.302 | 338 | 69 | 6 | 34 | 371 | 49 | 358 | 3.14e-166 | 469 |
| MS.gene008480.t1 | MTR_3g094020 | 47.674 | 344 | 133 | 11 | 36 | 371 | 7 | 311 | 3.13e-88 | 269 |
| MS.gene008480.t1 | MTR_2g099050 | 51.590 | 283 | 94 | 11 | 36 | 291 | 72 | 338 | 4.56e-68 | 221 |
| MS.gene008480.t1 | MTR_6g034945 | 46.048 | 291 | 121 | 15 | 34 | 315 | 26 | 289 | 2.57e-54 | 181 |
| MS.gene008480.t1 | MTR_4g072090 | 44.355 | 248 | 79 | 4 | 77 | 268 | 213 | 457 | 1.42e-51 | 179 |
| MS.gene008480.t1 | MTR_4g072090 | 41.991 | 231 | 75 | 4 | 77 | 251 | 213 | 440 | 6.04e-43 | 155 |
| MS.gene008480.t1 | MTR_1g023690 | 41.154 | 260 | 94 | 7 | 63 | 263 | 220 | 479 | 4.98e-32 | 127 |
| MS.gene008480.t1 | MTR_2g090900 | 47.312 | 93 | 49 | 0 | 171 | 263 | 191 | 283 | 3.45e-19 | 87.8 |
| MS.gene008480.t1 | MTR_2g090900 | 47.312 | 93 | 49 | 0 | 171 | 263 | 191 | 283 | 4.05e-19 | 87.8 |
| MS.gene008480.t1 | MTR_1g099030 | 34.969 | 163 | 92 | 3 | 106 | 268 | 73 | 221 | 4.29e-19 | 86.7 |
| MS.gene008480.t1 | MTR_4g079500 | 41.379 | 116 | 57 | 1 | 171 | 275 | 194 | 309 | 1.85e-18 | 85.5 |
| MS.gene008480.t1 | MTR_8g088650 | 41.935 | 93 | 49 | 1 | 171 | 263 | 234 | 321 | 1.49e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008480.t1 | AT2G40620 | 47.277 | 404 | 139 | 14 | 5 | 371 | 1 | 367 | 4.20e-98 | 296 |
| MS.gene008480.t1 | AT1G06850 | 64.455 | 211 | 64 | 3 | 150 | 360 | 127 | 326 | 1.12e-85 | 263 |
| MS.gene008480.t1 | AT2G31370 | 49.632 | 272 | 110 | 10 | 36 | 289 | 58 | 320 | 8.21e-66 | 213 |
| MS.gene008480.t1 | AT2G31370 | 49.632 | 272 | 110 | 10 | 36 | 289 | 58 | 320 | 2.54e-65 | 213 |
| MS.gene008480.t1 | AT2G31370 | 49.632 | 272 | 110 | 10 | 36 | 289 | 58 | 320 | 2.54e-65 | 213 |
| MS.gene008480.t1 | AT2G31370 | 49.632 | 272 | 110 | 10 | 36 | 289 | 58 | 320 | 2.54e-65 | 213 |
| MS.gene008480.t1 | AT2G31370 | 49.632 | 272 | 110 | 10 | 36 | 289 | 58 | 320 | 2.54e-65 | 213 |
| MS.gene008480.t1 | AT2G31370 | 49.632 | 272 | 110 | 10 | 36 | 289 | 58 | 320 | 2.54e-65 | 213 |
| MS.gene008480.t1 | AT2G31370 | 49.632 | 272 | 110 | 10 | 36 | 289 | 58 | 320 | 2.54e-65 | 213 |
| MS.gene008480.t1 | AT1G06070 | 51.383 | 253 | 107 | 7 | 36 | 279 | 73 | 318 | 1.81e-61 | 203 |
| MS.gene008480.t1 | AT4G38900 | 39.889 | 361 | 115 | 14 | 16 | 278 | 146 | 502 | 2.16e-50 | 177 |
| MS.gene008480.t1 | AT4G38900 | 39.889 | 361 | 115 | 14 | 16 | 278 | 146 | 502 | 2.16e-50 | 177 |
| MS.gene008480.t1 | AT4G38900 | 39.237 | 367 | 115 | 15 | 16 | 278 | 146 | 508 | 5.86e-48 | 171 |
| MS.gene008480.t1 | AT1G43700 | 62.222 | 135 | 50 | 1 | 158 | 291 | 181 | 315 | 9.95e-45 | 157 |
| MS.gene008480.t1 | AT2G21230 | 67.826 | 115 | 37 | 0 | 154 | 268 | 353 | 467 | 1.92e-42 | 155 |
| MS.gene008480.t1 | AT2G21230 | 67.826 | 115 | 37 | 0 | 154 | 268 | 353 | 467 | 1.92e-42 | 155 |
| MS.gene008480.t1 | AT1G06850 | 87.500 | 80 | 10 | 0 | 150 | 229 | 127 | 206 | 2.57e-41 | 145 |
| MS.gene008480.t1 | AT2G21230 | 63.636 | 121 | 38 | 1 | 154 | 268 | 353 | 473 | 2.24e-39 | 147 |
| MS.gene008480.t1 | AT2G21230 | 68.687 | 99 | 31 | 0 | 154 | 252 | 353 | 451 | 3.72e-36 | 137 |
| MS.gene008480.t1 | AT2G12900 | 41.346 | 104 | 60 | 1 | 163 | 266 | 109 | 211 | 2.94e-20 | 89.7 |
| MS.gene008480.t1 | AT3G58120 | 46.237 | 93 | 50 | 0 | 171 | 263 | 202 | 294 | 1.77e-19 | 88.6 |
| MS.gene008480.t1 | AT2G42380 | 45.745 | 94 | 51 | 0 | 170 | 263 | 185 | 278 | 1.97e-19 | 88.6 |
| MS.gene008480.t1 | AT2G13150 | 41.584 | 101 | 58 | 1 | 163 | 263 | 142 | 241 | 2.24e-17 | 81.6 |
| MS.gene008480.t1 | AT2G12940 | 39.423 | 104 | 62 | 1 | 162 | 265 | 140 | 242 | 5.58e-17 | 80.9 |
| MS.gene008480.t1 | AT2G42380 | 45.238 | 84 | 46 | 0 | 169 | 252 | 184 | 267 | 1.61e-16 | 79.3 |
| MS.gene008480.t1 | AT2G21235 | 34.028 | 144 | 63 | 2 | 171 | 282 | 359 | 502 | 2.26e-16 | 80.9 |
| MS.gene008480.t1 | AT3G58120 | 46.835 | 79 | 42 | 0 | 171 | 249 | 202 | 280 | 1.68e-15 | 76.6 |
| MS.gene008480.t1 | AT2G42380 | 40.426 | 94 | 45 | 1 | 170 | 263 | 185 | 267 | 4.84e-13 | 69.7 |
| MS.gene008480.t1 | AT1G58110 | 44.048 | 84 | 47 | 0 | 180 | 263 | 238 | 321 | 4.64e-12 | 67.0 |
| MS.gene008480.t1 | AT1G58110 | 44.048 | 84 | 47 | 0 | 180 | 263 | 238 | 321 | 4.64e-12 | 67.0 |
Find 125 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCTCTGAATCTTATAATA+TGG | 0.191240 | 3.3:-55644981 | MS.gene008480:CDS |
| CAAAGCTCAGCGAGTTTATC+AGG | 0.287151 | 3.3:+55646990 | None:intergenic |
| GGAGGATCCGCCTCCGGTTA+AGG | 0.300969 | 3.3:+55647295 | None:intergenic |
| CCGTCTCCCCGACGACATTA+TGG | 0.308655 | 3.3:-55647336 | MS.gene008480:CDS |
| TGATCAGCTCGGTCGTTTGC+AGG | 0.330105 | 3.3:-55644786 | MS.gene008480:CDS |
| AGCTGAGATTTGGTGAGAAT+TGG | 0.342600 | 3.3:+55644820 | None:intergenic |
| GTTTGTTGCAACTGATAATT+CGG | 0.347347 | 3.3:+55644842 | None:intergenic |
| TGACCTGGTATAATGTCAAC+TGG | 0.348388 | 3.3:+55645919 | None:intergenic |
| ACTCGTTCCGGCGCCGGCGC+CGG | 0.351806 | 3.3:+55647151 | None:intergenic |
| CTATGTCTATGCCTCGTTCT+CGG | 0.357586 | 3.3:+55647086 | None:intergenic |
| GGGGAGACGGTAGTTGATTT+CGG | 0.362415 | 3.3:+55647349 | None:intergenic |
| TTTGCAACATAGCTGAGATT+TGG | 0.368300 | 3.3:+55644810 | None:intergenic |
| TCCCCTTCCGATCCCTTAAC+CGG | 0.369213 | 3.3:-55647308 | MS.gene008480:CDS |
| GGGTTCGCCGGCGACGGTGG+TGG | 0.376326 | 3.3:+55647397 | None:intergenic |
| TACGATAATTGCGCCGGCGC+CGG | 0.379254 | 3.3:-55647164 | MS.gene008480:CDS |
| ACGGTAGTTGATTTCGGATT+GGG | 0.379319 | 3.3:+55647355 | None:intergenic |
| AGATGGGGAGTGACCAGATT+GGG | 0.379919 | 3.3:+55644871 | None:intergenic |
| CCACAACATTCAGGTCCTTC+AGG | 0.383951 | 3.3:-55644914 | MS.gene008480:CDS |
| CCCTCTGAATCTTATAATAT+GGG | 0.390160 | 3.3:-55644980 | MS.gene008480:CDS |
| GTCGTTATTCCCACTCGTTC+CGG | 0.393983 | 3.3:+55647139 | None:intergenic |
| ACTTCGACGACGAATATGTT+TGG | 0.402900 | 3.3:-55647044 | MS.gene008480:CDS |
| ATGCACCAGATGCAATTTGC+AGG | 0.409287 | 3.3:-55644956 | MS.gene008480:CDS |
| CGTTGATGAAGGAAGTTGAT+AGG | 0.413861 | 3.3:-55645033 | MS.gene008480:CDS |
| CTGATAAACTCGCTGAGCTT+TGG | 0.417393 | 3.3:-55646989 | MS.gene008480:CDS |
| GAGGATCCGCCTCCGGTTAA+GGG | 0.422535 | 3.3:+55647296 | None:intergenic |
| AACATACAATTTCCCCAATC+TGG | 0.426473 | 3.3:-55644884 | MS.gene008480:CDS |
| AATTGCGCCGGCGCCGGCGC+CGG | 0.427276 | 3.3:-55647158 | MS.gene008480:CDS |
| CTCGTCGAGGCTAGCGGTGG+AGG | 0.435014 | 3.3:+55647277 | None:intergenic |
| ATTCCCACTCGTTCCGGCGC+CGG | 0.435287 | 3.3:+55647145 | None:intergenic |
| GGCGCCGGCGCCGGAACGAG+TGG | 0.435854 | 3.3:-55647149 | MS.gene008480:CDS |
| GACGGTAGTTGATTTCGGAT+TGG | 0.438661 | 3.3:+55647354 | None:intergenic |
| TTGAACGCGCAGCAGATTGC+CGG | 0.443274 | 3.3:+55646021 | None:intergenic |
| TGATAATTCGGCACGTCAGA+TGG | 0.444587 | 3.3:+55644854 | None:intergenic |
| GGCGCGACGGTGGTGAGAGT+GGG | 0.450968 | 3.3:+55647376 | None:intergenic |
| GAGTTGTAGCCTCTGTTTGA+AGG | 0.453582 | 3.3:+55645949 | None:intergenic |
| AGAGTGGGGTTCGCCGGCGA+CGG | 0.455624 | 3.3:+55647391 | None:intergenic |
| TTCATTCGCGGCAGCGTCAA+CGG | 0.456932 | 3.3:-55647425 | MS.gene008480:CDS |
| GCCGGCGCAATTATCGTAAC+CGG | 0.471596 | 3.3:+55647169 | None:intergenic |
| GAAAGGTCCATAATGTCGTC+GGG | 0.474927 | 3.3:+55647329 | None:intergenic |
| TCTGCAATCCATGGAACAAC+AGG | 0.475201 | 3.3:-55645287 | MS.gene008480:CDS |
| TTGATCCAAAACGTGCTAAG+AGG | 0.475774 | 3.3:-55646962 | MS.gene008480:intron |
| GATCAGCTCGGTCGTTTGCA+GGG | 0.478316 | 3.3:-55644785 | MS.gene008480:CDS |
| GGGCGCGACGGTGGTGAGAG+TGG | 0.484152 | 3.3:+55647375 | None:intergenic |
| TTGACCCTGCAAATTGCATC+TGG | 0.487667 | 3.3:+55644951 | None:intergenic |
| CAGATGGGGAGTGACCAGAT+TGG | 0.491552 | 3.3:+55644870 | None:intergenic |
| GACGTTGGAAGAAGGTGCAT+TGG | 0.495650 | 3.3:+55647448 | None:intergenic |
| GAATATGTTTGGAGAGATCA+TGG | 0.496464 | 3.3:-55647033 | MS.gene008480:CDS |
| CCATAATGTCGTCGGGGAGA+CGG | 0.497730 | 3.3:+55647336 | None:intergenic |
| ACGTTGGAAGAAGGTGCATT+GGG | 0.501336 | 3.3:+55647449 | None:intergenic |
| GATAGGCTTAAGATTGCTAC+CGG | 0.505157 | 3.3:-55645016 | MS.gene008480:CDS |
| TCCGATCCCTTAACCGGAGG+CGG | 0.510612 | 3.3:-55647302 | MS.gene008480:CDS |
| CAAGCTCCGTCTGCAATCCA+TGG | 0.511411 | 3.3:-55645296 | MS.gene008480:CDS |
| TCCGGTTAAGGGATCGGAAG+GGG | 0.511472 | 3.3:+55647307 | None:intergenic |
| CGAATGAAGACGTTGGAAGA+AGG | 0.511752 | 3.3:+55647440 | None:intergenic |
| TTCAAGCTCTTGTATATAGC+GGG | 0.514078 | 3.3:+55645986 | None:intergenic |
| ATTGGGGAAATTGTATGTTC+TGG | 0.517892 | 3.3:+55644888 | None:intergenic |
| TCTTCCAACGTCTTCATTCG+CGG | 0.520953 | 3.3:-55647437 | MS.gene008480:CDS |
| GGTGAAGAAGAGATCGTCTT+CGG | 0.522787 | 3.3:+55647247 | None:intergenic |
| GATAATTCGGCACGTCAGAT+GGG | 0.528159 | 3.3:+55644855 | None:intergenic |
| GTGGGGTTCGCCGGCGACGG+TGG | 0.529051 | 3.3:+55647394 | None:intergenic |
| GGCGTCTCCACCACCGTCGC+CGG | 0.529586 | 3.3:-55647404 | MS.gene008480:CDS |
| AAGGTGTGCCTGTTGTTCCA+TGG | 0.533755 | 3.3:+55645279 | None:intergenic |
| AGAGGGGTTCATTGCCTCCC+CGG | 0.534741 | 3.3:+55644997 | None:intergenic |
| AATAACGACGGAGAGAAGAG+TGG | 0.537621 | 3.3:-55647125 | MS.gene008480:CDS |
| AGCGGTGGAGGATCCGCCTC+CGG | 0.538449 | 3.3:+55647289 | None:intergenic |
| TCCGCCTCCGGTTAAGGGAT+CGG | 0.542347 | 3.3:+55647301 | None:intergenic |
| ACCGCTAGCCTCGACGAGAT+CGG | 0.544429 | 3.3:-55647272 | MS.gene008480:CDS |
| TGTGCAGAATACTTGCAAAC+CGG | 0.544736 | 3.3:-55646040 | MS.gene008480:intron |
| TCTTAATGATGCGTTGATGA+AGG | 0.548957 | 3.3:-55645044 | MS.gene008480:CDS |
| TGCCCAGTTGACATTATACC+AGG | 0.552743 | 3.3:-55645922 | MS.gene008480:intron |
| CCCATATTATAAGATTCAGA+GGG | 0.552973 | 3.3:+55644980 | None:intergenic |
| ATCAGCTCGGTCGTTTGCAG+GGG | 0.553567 | 3.3:-55644784 | MS.gene008480:CDS |
| TCCCATATTATAAGATTCAG+AGG | 0.556236 | 3.3:+55644979 | None:intergenic |
| TGCGCGTTCAAAAGAGAGAA+AGG | 0.557307 | 3.3:-55646009 | MS.gene008480:CDS |
| TTAAGGGATCGGAAGGGGAA+AGG | 0.559188 | 3.3:+55647312 | None:intergenic |
| GTGGTGAGAGTGGGGTTCGC+CGG | 0.559617 | 3.3:+55647385 | None:intergenic |
| AGTTGTAGCCTCTGTTTGAA+GGG | 0.560730 | 3.3:+55645950 | None:intergenic |
| CTCTCACTTGCAGAGATCGA+GGG | 0.561689 | 3.3:+55644716 | None:intergenic |
| TTTCGGATTGGGCGCGACGG+TGG | 0.565517 | 3.3:+55647366 | None:intergenic |
| TACATTGACGTTGAGAAGCT+CGG | 0.568054 | 3.3:-55647224 | MS.gene008480:CDS |
| AGACATAGCTACTCGGTGGA+TGG | 0.573309 | 3.3:-55647071 | MS.gene008480:CDS |
| GCGCCGGCGCCGGAACGAGT+GGG | 0.574879 | 3.3:-55647148 | MS.gene008480:CDS |
| CCTCCGGTTAAGGGATCGGA+AGG | 0.577169 | 3.3:+55647305 | None:intergenic |
| TATACAAGAGCTTGAACGCA+AGG | 0.583220 | 3.3:-55645979 | MS.gene008480:CDS |
| GTTGTTCCATGGATTGCAGA+CGG | 0.584302 | 3.3:+55645290 | None:intergenic |
| TCCGATCTCGTCGAGGCTAG+CGG | 0.585549 | 3.3:+55647271 | None:intergenic |
| GGAAAGGTCCATAATGTCGT+CGG | 0.585789 | 3.3:+55647328 | None:intergenic |
| ACCGGTTACGATAATTGCGC+CGG | 0.586445 | 3.3:-55647170 | MS.gene008480:CDS |
| AAGCTCGGTGGAGTAACAAA+CGG | 0.588976 | 3.3:-55647209 | MS.gene008480:CDS |
| GAGCTTCTCAACGTCAATGT+AGG | 0.589340 | 3.3:+55647226 | None:intergenic |
| ACTCTCACTTGCAGAGATCG+AGG | 0.593150 | 3.3:+55644715 | None:intergenic |
| CCTTCCGATCCCTTAACCGG+AGG | 0.603802 | 3.3:-55647305 | MS.gene008480:CDS |
| ATGTTACGACGCCGAGAACG+AGG | 0.610427 | 3.3:-55647097 | MS.gene008480:CDS |
| GTTCAAGCTCTTGTATATAG+CGG | 0.616568 | 3.3:+55645985 | None:intergenic |
| GCGCGACGGTGGTGAGAGTG+GGG | 0.616993 | 3.3:+55647377 | None:intergenic |
| CAACAGGCACACCTTCGAGA+TGG | 0.617131 | 3.3:-55645271 | MS.gene008480:intron |
| TCTCACTTGCAGAGATCGAG+GGG | 0.620472 | 3.3:+55644717 | None:intergenic |
| ATAACGACGGAGAGAAGAGT+GGG | 0.623278 | 3.3:-55647124 | MS.gene008480:CDS |
| TGATTTCGGATTGGGCGCGA+CGG | 0.623283 | 3.3:+55647363 | None:intergenic |
| ATAGGCTTAAGATTGCTACC+GGG | 0.624945 | 3.3:-55645015 | MS.gene008480:CDS |
| TGCACCAGATGCAATTTGCA+GGG | 0.627466 | 3.3:-55644955 | MS.gene008480:CDS |
| GGTTCGAATTCGAATCAGAC+CGG | 0.629064 | 3.3:-55647188 | MS.gene008480:CDS |
| GATGGGGAGTGACCAGATTG+GGG | 0.629456 | 3.3:+55644872 | None:intergenic |
| ATAATTCGGCACGTCAGATG+GGG | 0.631949 | 3.3:+55644856 | None:intergenic |
| GATCTCGTCGAGGCTAGCGG+TGG | 0.633559 | 3.3:+55647274 | None:intergenic |
| GGGCTTGACATCAGTAACAA+AGG | 0.634447 | 3.3:-55644764 | MS.gene008480:CDS |
| AATAGTAGCTACCATCTCGA+AGG | 0.635096 | 3.3:+55645260 | None:intergenic |
| GACCTGGTATAATGTCAACT+GGG | 0.646695 | 3.3:+55645920 | None:intergenic |
| CTCCGGTTAAGGGATCGGAA+GGG | 0.652220 | 3.3:+55647306 | None:intergenic |
| TGTATGTTCTGGTGACCTGA+AGG | 0.654943 | 3.3:+55644899 | None:intergenic |
| TAGGCTTAAGATTGCTACCG+GGG | 0.656168 | 3.3:-55645014 | MS.gene008480:CDS |
| CCTGAAGGACCTGAATGTTG+TGG | 0.674365 | 3.3:+55644914 | None:intergenic |
| GGTTCAGACCCTTCAAACAG+AGG | 0.679114 | 3.3:-55645958 | MS.gene008480:CDS |
| CTTCGGATCCGATCTCGTCG+AGG | 0.680866 | 3.3:+55647264 | None:intergenic |
| GAGGCATAGACATAGCTACT+CGG | 0.681656 | 3.3:-55647078 | MS.gene008480:CDS |
| GCTTAAGATTGCTACCGGGG+AGG | 0.689095 | 3.3:-55645011 | MS.gene008480:CDS |
| GCTGCCGCGAATGAAGACGT+TGG | 0.692550 | 3.3:+55647433 | None:intergenic |
| CCATATTATAAGATTCAGAG+GGG | 0.694210 | 3.3:+55644981 | None:intergenic |
| AAAGGTCCATAATGTCGTCG+GGG | 0.698449 | 3.3:+55647330 | None:intergenic |
| AGCTCAGCGAGTTTATCAGG+AGG | 0.701452 | 3.3:+55646993 | None:intergenic |
| GCATAGACATAGCTACTCGG+TGG | 0.704637 | 3.3:-55647075 | MS.gene008480:CDS |
| GGAACGAGTGGGAATAACGA+CGG | 0.709896 | 3.3:-55647137 | MS.gene008480:CDS |
| ATGTTGCAAAATGATCAGCT+CGG | 0.713760 | 3.3:-55644797 | MS.gene008480:CDS |
| CTCACTTGCAGAGATCGAGG+GGG | 0.728850 | 3.3:+55644718 | None:intergenic |
| ATTGACGTTGAGAAGCTCGG+TGG | 0.729210 | 3.3:-55647221 | MS.gene008480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATACTAGTAATTTAGAT+TGG | - | chr3.3:55646675-55646694 | MS.gene008480:intron | 15.0% |
| !!! | TTTTAGAAAAAACTACAATT+TGG | - | chr3.3:55645562-55645581 | MS.gene008480:intron | 15.0% |
| !! | TGTTTCAGTTTATTCAAAAA+TGG | + | chr3.3:55645831-55645850 | None:intergenic | 20.0% |
| !!! | AAGTTAGAATATTCCATTTT+TGG | - | chr3.3:55645850-55645869 | MS.gene008480:intron | 20.0% |
| !!! | ATATAGTTAGTATTGACATT+TGG | - | chr3.3:55645640-55645659 | MS.gene008480:intron | 20.0% |
| !!! | ATGATGAATAAGAGTTTTTT+TGG | + | chr3.3:55645755-55645774 | None:intergenic | 20.0% |
| !!! | TGATTTGAAATCTAGTTTTT+TGG | - | chr3.3:55645879-55645898 | MS.gene008480:intron | 20.0% |
| !!! | TTGATTTTATCTAGATTCAT+CGG | - | chr3.3:55645295-55645314 | MS.gene008480:CDS | 20.0% |
| !!! | TTTCAAAAACTGAATTTTAG+TGG | - | chr3.3:55646060-55646079 | MS.gene008480:intron | 20.0% |
| ! | AAATGCATTTACAATTACTG+TGG | - | chr3.3:55645921-55645940 | MS.gene008480:intron | 25.0% |
| ! | AACTGCAAATATTTCTTCTT+CGG | - | chr3.3:55646449-55646468 | MS.gene008480:intron | 25.0% |
| ! | CAAATCATCTAAACCAAAAA+TGG | + | chr3.3:55645866-55645885 | None:intergenic | 25.0% |
| ! | CCACTAACTAATTATAACAA+AGG | + | chr3.3:55647077-55647096 | None:intergenic | 25.0% |
| ! | GTAAATCATAAGAAAGTGAT+TGG | + | chr3.3:55646941-55646960 | None:intergenic | 25.0% |
| ! | TATAATCAAAAGCTGCAAAA+TGG | + | chr3.3:55646417-55646436 | None:intergenic | 25.0% |
| ! | TGGAATGTTAATGTTGAAAT+GGG | - | chr3.3:55645482-55645501 | MS.gene008480:intron | 25.0% |
| ! | TTATCTACTAGAAGAAAGAA+AGG | + | chr3.3:55646628-55646647 | None:intergenic | 25.0% |
| ! | TTGGAATGTTAATGTTGAAA+TGG | - | chr3.3:55645481-55645500 | MS.gene008480:intron | 25.0% |
| ! | TTGTATCATAAGAAAGTGAT+TGG | + | chr3.3:55647003-55647022 | None:intergenic | 25.0% |
| !! | CCTTTGTTATAATTAGTTAG+TGG | - | chr3.3:55647074-55647093 | MS.gene008480:CDS | 25.0% |
| !!! | ATCACTTATTGATTTTTCAG+AGG | - | chr3.3:55646816-55646835 | MS.gene008480:intron | 25.0% |
| !!! | CAACTTTTTTGTGATTGAAT+TGG | - | chr3.3:55645265-55645284 | MS.gene008480:intron | 25.0% |
| !!! | TCACTTATTGATTTTTCAGA+GGG | - | chr3.3:55646817-55646836 | MS.gene008480:intron | 25.0% |
| !!! | TTGGCAAGTTATTTTAGTAA+TGG | - | chr3.3:55646694-55646713 | MS.gene008480:intron | 25.0% |
| AAACAACTGAAGTCAACAAA+CGG | + | chr3.3:55646759-55646778 | None:intergenic | 30.0% | |
| AGTAGTTGATTACGATTGTT+TGG | - | chr3.3:55645426-55645445 | MS.gene008480:intron | 30.0% | |
| CAATGAATTTGGCAAAATCA+CGG | + | chr3.3:55645607-55645626 | None:intergenic | 30.0% | |
| CCATATTATAAGATTCAGAG+GGG | + | chr3.3:55647192-55647211 | None:intergenic | 30.0% | |
| CCCATATTATAAGATTCAGA+GGG | + | chr3.3:55647193-55647212 | None:intergenic | 30.0% | |
| CCCTCTGAATCTTATAATAT+GGG | - | chr3.3:55647190-55647209 | MS.gene008480:CDS | 30.0% | |
| GTAGTTGATTACGATTGTTT+GGG | - | chr3.3:55645427-55645446 | MS.gene008480:intron | 30.0% | |
| TCCCATATTATAAGATTCAG+AGG | + | chr3.3:55647194-55647213 | None:intergenic | 30.0% | |
| ! | GTTTGTTGCAACTGATAATT+CGG | + | chr3.3:55647331-55647350 | None:intergenic | 30.0% |
| !! | GATCTTGAAGTTTTGCTTTT+TGG | - | chr3.3:55645462-55645481 | MS.gene008480:intron | 30.0% |
| !! | TATGATAGAAGTGTCTAAGT+TGG | - | chr3.3:55646355-55646374 | MS.gene008480:intron | 30.0% |
| !!! | CAAGTTATTTTAGTAATGGC+TGG | - | chr3.3:55646698-55646717 | MS.gene008480:intron | 30.0% |
| !!! | GTGTTGGATCTTTTGTTTTT+TGG | - | chr3.3:55646322-55646341 | MS.gene008480:intron | 30.0% |
| !!! | TAGATGAAGTTTTGAACAGT+TGG | + | chr3.3:55646495-55646514 | None:intergenic | 30.0% |
| AACATACAATTTCCCCAATC+TGG | - | chr3.3:55647286-55647305 | MS.gene008480:CDS | 35.0% | |
| ACAAAAGATCCAACACACAA+AGG | + | chr3.3:55646318-55646337 | None:intergenic | 35.0% | |
| ATGTTGCAAAATGATCAGCT+CGG | - | chr3.3:55647373-55647392 | MS.gene008480:CDS | 35.0% | |
| ATTGGGGAAATTGTATGTTC+TGG | + | chr3.3:55647285-55647304 | None:intergenic | 35.0% | |
| CCCCTCTGAATCTTATAATA+TGG | - | chr3.3:55647189-55647208 | MS.gene008480:CDS | 35.0% | |
| CTAGATGAGCACAATGAATT+TGG | + | chr3.3:55645618-55645637 | None:intergenic | 35.0% | |
| GAATATGTTTGGAGAGATCA+TGG | - | chr3.3:55645137-55645156 | MS.gene008480:intron | 35.0% | |
| GTTCAAGCTCTTGTATATAG+CGG | + | chr3.3:55646188-55646207 | None:intergenic | 35.0% | |
| TGAATGTCGCGTGTTTAAAT+GGG | - | chr3.3:55645976-55645995 | MS.gene008480:CDS | 35.0% | |
| TTCAAGCTCTTGTATATAGC+GGG | + | chr3.3:55646187-55646206 | None:intergenic | 35.0% | |
| TTGAATGTCGCGTGTTTAAA+TGG | - | chr3.3:55645975-55645994 | MS.gene008480:CDS | 35.0% | |
| TTTGCAACATAGCTGAGATT+TGG | + | chr3.3:55647363-55647382 | None:intergenic | 35.0% | |
| ! | AAAAACCTCTTAGCACGTTT+TGG | + | chr3.3:55645216-55645235 | None:intergenic | 35.0% |
| ! | TCTTAATGATGCGTTGATGA+AGG | - | chr3.3:55647126-55647145 | MS.gene008480:CDS | 35.0% |
| ! | TTTTCAATGCCACAACATTC+AGG | - | chr3.3:55647247-55647266 | MS.gene008480:CDS | 35.0% |
| !! | AGTATTGACATTTGGCACTT+TGG | - | chr3.3:55645648-55645667 | MS.gene008480:intron | 35.0% |
| !! | ATAGAAGTGTCTAAGTTGGT+TGG | - | chr3.3:55646359-55646378 | MS.gene008480:intron | 35.0% |
| AATAGTAGCTACCATCTCGA+AGG | + | chr3.3:55646913-55646932 | None:intergenic | 40.0% | |
| ACTTCGACGACGAATATGTT+TGG | - | chr3.3:55645126-55645145 | MS.gene008480:intron | 40.0% | |
| AGTTGTAGCCTCTGTTTGAA+GGG | + | chr3.3:55646223-55646242 | None:intergenic | 40.0% | |
| ATAGGCTTAAGATTGCTACC+GGG | - | chr3.3:55647155-55647174 | MS.gene008480:CDS | 40.0% | |
| CCAACACACAAAGGAATTTC+TGG | + | chr3.3:55646309-55646328 | None:intergenic | 40.0% | |
| CCAGAAATTCCTTTGTGTGT+TGG | - | chr3.3:55646306-55646325 | MS.gene008480:intron | 40.0% | |
| GACCTGGTATAATGTCAACT+GGG | + | chr3.3:55646253-55646272 | None:intergenic | 40.0% | |
| GATAGGCTTAAGATTGCTAC+CGG | - | chr3.3:55647154-55647173 | MS.gene008480:CDS | 40.0% | |
| TACATTGACGTTGAGAAGCT+CGG | - | chr3.3:55644946-55644965 | MS.gene008480:CDS | 40.0% | |
| TATACAAGAGCTTGAACGCA+AGG | - | chr3.3:55646191-55646210 | MS.gene008480:intron | 40.0% | |
| TGAAACTACAGCAGCATCTA+TGG | + | chr3.3:55646034-55646053 | None:intergenic | 40.0% | |
| TGACCTGGTATAATGTCAAC+TGG | + | chr3.3:55646254-55646273 | None:intergenic | 40.0% | |
| TGGTCGCAAATGCTTATACA+AGG | + | chr3.3:55646475-55646494 | None:intergenic | 40.0% | |
| TGTGCAGAATACTTGCAAAC+CGG | - | chr3.3:55646130-55646149 | MS.gene008480:intron | 40.0% | |
| TTGATCCAAAACGTGCTAAG+AGG | - | chr3.3:55645208-55645227 | MS.gene008480:intron | 40.0% | |
| ! | AAATGGGAATTTTCGTGCGT+CGG | - | chr3.3:55645498-55645517 | MS.gene008480:intron | 40.0% |
| ! | ACGGTAGTTGATTTCGGATT+GGG | + | chr3.3:55644818-55644837 | None:intergenic | 40.0% |
| ! | AGACTAAGTTGAAACTGACC+TGG | + | chr3.3:55646269-55646288 | None:intergenic | 40.0% |
| ! | CGTTGATGAAGGAAGTTGAT+AGG | - | chr3.3:55647137-55647156 | MS.gene008480:CDS | 40.0% |
| ! | GTGTTGGTATTTGATGATCG+CGG | - | chr3.3:55645670-55645689 | MS.gene008480:intron | 40.0% |
| !! | AGCTGAGATTTGGTGAGAAT+TGG | + | chr3.3:55647353-55647372 | None:intergenic | 40.0% |
| !! | ATTTTTCAGAGGGACACAAC+TGG | - | chr3.3:55646827-55646846 | MS.gene008480:intron | 40.0% |
| !! | GTAATGGCTGGTATTGATAC+TGG | - | chr3.3:55646710-55646729 | MS.gene008480:intron | 40.0% |
| AAAGGTCCATAATGTCGTCG+GGG | + | chr3.3:55644843-55644862 | None:intergenic | 45.0% | |
| AATAACGACGGAGAGAAGAG+TGG | - | chr3.3:55645045-55645064 | MS.gene008480:CDS | 45.0% | |
| AGAATCACGATGAGTTGTCG+TGG | - | chr3.3:55645539-55645558 | MS.gene008480:intron | 45.0% | |
| ATAACGACGGAGAGAAGAGT+GGG | - | chr3.3:55645046-55645065 | MS.gene008480:CDS | 45.0% | |
| ATAATTCGGCACGTCAGATG+GGG | + | chr3.3:55647317-55647336 | None:intergenic | 45.0% | |
| ATGCACCAGATGCAATTTGC+AGG | - | chr3.3:55647214-55647233 | MS.gene008480:CDS | 45.0% | |
| CAAAGCTCAGCGAGTTTATC+AGG | + | chr3.3:55645183-55645202 | None:intergenic | 45.0% | |
| CGAATGAAGACGTTGGAAGA+AGG | + | chr3.3:55644733-55644752 | None:intergenic | 45.0% | |
| CTATGTCTATGCCTCGTTCT+CGG | + | chr3.3:55645087-55645106 | None:intergenic | 45.0% | |
| CTGATAAACTCGCTGAGCTT+TGG | - | chr3.3:55645181-55645200 | MS.gene008480:intron | 45.0% | |
| GAAAGGTCCATAATGTCGTC+GGG | + | chr3.3:55644844-55644863 | None:intergenic | 45.0% | |
| GAGCTTCTCAACGTCAATGT+AGG | + | chr3.3:55644947-55644966 | None:intergenic | 45.0% | |
| GAGGCATAGACATAGCTACT+CGG | - | chr3.3:55645092-55645111 | MS.gene008480:intron | 45.0% | |
| GAGTTGTAGCCTCTGTTTGA+AGG | + | chr3.3:55646224-55646243 | None:intergenic | 45.0% | |
| GATAATTCGGCACGTCAGAT+GGG | + | chr3.3:55647318-55647337 | None:intergenic | 45.0% | |
| GCGTGTTTAAATGGGATGTC+AGG | - | chr3.3:55645984-55646003 | MS.gene008480:CDS | 45.0% | |
| GGAAAGGTCCATAATGTCGT+CGG | + | chr3.3:55644845-55644864 | None:intergenic | 45.0% | |
| GGGCTTGACATCAGTAACAA+AGG | - | chr3.3:55647406-55647425 | MS.gene008480:CDS | 45.0% | |
| GGTGAAGAAGAGATCGTCTT+CGG | + | chr3.3:55644926-55644945 | None:intergenic | 45.0% | |
| GGTTCGAATTCGAATCAGAC+CGG | - | chr3.3:55644982-55645001 | MS.gene008480:CDS | 45.0% | |
| TAGGCTTAAGATTGCTACCG+GGG | - | chr3.3:55647156-55647175 | MS.gene008480:CDS | 45.0% | |
| TCTGCAATCCATGGAACAAC+AGG | - | chr3.3:55646883-55646902 | MS.gene008480:intron | 45.0% | |
| TCTTCCAACGTCTTCATTCG+CGG | - | chr3.3:55644733-55644752 | MS.gene008480:CDS | 45.0% | |
| TGATAATTCGGCACGTCAGA+TGG | + | chr3.3:55647319-55647338 | None:intergenic | 45.0% | |
| TGCACCAGATGCAATTTGCA+GGG | - | chr3.3:55647215-55647234 | MS.gene008480:CDS | 45.0% | |
| TGCCCAGTTGACATTATACC+AGG | - | chr3.3:55646248-55646267 | MS.gene008480:intron | 45.0% | |
| TGCGCGTTCAAAAGAGAGAA+AGG | - | chr3.3:55646161-55646180 | MS.gene008480:intron | 45.0% | |
| TGTATGTTCTGGTGACCTGA+AGG | + | chr3.3:55647274-55647293 | None:intergenic | 45.0% | |
| TTGACCCTGCAAATTGCATC+TGG | + | chr3.3:55647222-55647241 | None:intergenic | 45.0% | |
| ! | AAGCTCGGTGGAGTAACAAA+CGG | - | chr3.3:55644961-55644980 | MS.gene008480:CDS | 45.0% |
| ! | ACGTTGGAAGAAGGTGCATT+GGG | + | chr3.3:55644724-55644743 | None:intergenic | 45.0% |
| ! | GACATTTGGCACTTTGGTGT+TGG | - | chr3.3:55645654-55645673 | MS.gene008480:intron | 45.0% |
| ! | GACGGTAGTTGATTTCGGAT+TGG | + | chr3.3:55644819-55644838 | None:intergenic | 45.0% |
| ! | GTTGTTCCATGGATTGCAGA+CGG | + | chr3.3:55646883-55646902 | None:intergenic | 45.0% |
| !!! | TGATGATCGCGGTTTTGTTG+TGG | - | chr3.3:55645681-55645700 | MS.gene008480:intron | 45.0% |
| AAGGTGTGCCTGTTGTTCCA+TGG | + | chr3.3:55646894-55646913 | None:intergenic | 50.0% | |
| ACCGGTTACGATAATTGCGC+CGG | - | chr3.3:55645000-55645019 | MS.gene008480:CDS | 50.0% | |
| ACTCTCACTTGCAGAGATCG+AGG | + | chr3.3:55647458-55647477 | None:intergenic | 50.0% | |
| AGATGGGGAGTGACCAGATT+GGG | + | chr3.3:55647302-55647321 | None:intergenic | 50.0% | |
| AGCTCAGCGAGTTTATCAGG+AGG | + | chr3.3:55645180-55645199 | None:intergenic | 50.0% | |
| ATTGACGTTGAGAAGCTCGG+TGG | - | chr3.3:55644949-55644968 | MS.gene008480:CDS | 50.0% | |
| CCACAACATTCAGGTCCTTC+AGG | - | chr3.3:55647256-55647275 | MS.gene008480:CDS | 50.0% | |
| CCTGAAGGACCTGAATGTTG+TGG | + | chr3.3:55647259-55647278 | None:intergenic | 50.0% | |
| CTCTCACTTGCAGAGATCGA+GGG | + | chr3.3:55647457-55647476 | None:intergenic | 50.0% | |
| GCATAGACATAGCTACTCGG+TGG | - | chr3.3:55645095-55645114 | MS.gene008480:intron | 50.0% | |
| GGAACGAGTGGGAATAACGA+CGG | - | chr3.3:55645033-55645052 | MS.gene008480:CDS | 50.0% | |
| GGTTCAGACCCTTCAAACAG+AGG | - | chr3.3:55646212-55646231 | MS.gene008480:intron | 50.0% | |
| GTCGTTATTCCCACTCGTTC+CGG | + | chr3.3:55645034-55645053 | None:intergenic | 50.0% | |
| TCTCACTTGCAGAGATCGAG+GGG | + | chr3.3:55647456-55647475 | None:intergenic | 50.0% | |
| TTAAGGGATCGGAAGGGGAA+AGG | + | chr3.3:55644861-55644880 | None:intergenic | 50.0% | |
| ! | AGACATAGCTACTCGGTGGA+TGG | - | chr3.3:55645099-55645118 | MS.gene008480:intron | 50.0% |
| ! | GACGTTGGAAGAAGGTGCAT+TGG | + | chr3.3:55644725-55644744 | None:intergenic | 50.0% |
| ! | GGGGAGACGGTAGTTGATTT+CGG | + | chr3.3:55644824-55644843 | None:intergenic | 50.0% |
| AGGGGGCTTCAGATTTCACG+AGG | + | chr3.3:55647438-55647457 | None:intergenic | 55.0% | |
| ATCAGCTCGGTCGTTTGCAG+GGG | - | chr3.3:55647386-55647405 | MS.gene008480:CDS | 55.0% | |
| ATGTTACGACGCCGAGAACG+AGG | - | chr3.3:55645073-55645092 | MS.gene008480:intron | 55.0% | |
| CAACAGGCACACCTTCGAGA+TGG | - | chr3.3:55646899-55646918 | MS.gene008480:intron | 55.0% | |
| CAAGCTCCGTCTGCAATCCA+TGG | - | chr3.3:55646874-55646893 | MS.gene008480:intron | 55.0% | |
| CAGATGGGGAGTGACCAGAT+TGG | + | chr3.3:55647303-55647322 | None:intergenic | 55.0% | |
| CCATAATGTCGTCGGGGAGA+CGG | + | chr3.3:55644837-55644856 | None:intergenic | 55.0% | |
| CTCACTTGCAGAGATCGAGG+GGG | + | chr3.3:55647455-55647474 | None:intergenic | 55.0% | |
| CTCCGGTTAAGGGATCGGAA+GGG | + | chr3.3:55644867-55644886 | None:intergenic | 55.0% | |
| GATCAGCTCGGTCGTTTGCA+GGG | - | chr3.3:55647385-55647404 | MS.gene008480:CDS | 55.0% | |
| GATGGGGAGTGACCAGATTG+GGG | + | chr3.3:55647301-55647320 | None:intergenic | 55.0% | |
| GCCGGCGCAATTATCGTAAC+CGG | + | chr3.3:55645004-55645023 | None:intergenic | 55.0% | |
| GCTTAAGATTGCTACCGGGG+AGG | - | chr3.3:55647159-55647178 | MS.gene008480:CDS | 55.0% | |
| GGGGGCTTCAGATTTCACGA+GGG | + | chr3.3:55647437-55647456 | None:intergenic | 55.0% | |
| TCCCCTTCCGATCCCTTAAC+CGG | - | chr3.3:55644862-55644881 | MS.gene008480:CDS | 55.0% | |
| TCCGGTTAAGGGATCGGAAG+GGG | + | chr3.3:55644866-55644885 | None:intergenic | 55.0% | |
| TGATCAGCTCGGTCGTTTGC+AGG | - | chr3.3:55647384-55647403 | MS.gene008480:CDS | 55.0% | |
| TTCATTCGCGGCAGCGTCAA+CGG | - | chr3.3:55644745-55644764 | MS.gene008480:CDS | 55.0% | |
| TTGAACGCGCAGCAGATTGC+CGG | + | chr3.3:55646152-55646171 | None:intergenic | 55.0% | |
| ! | TGATTTCGGATTGGGCGCGA+CGG | + | chr3.3:55644810-55644829 | None:intergenic | 55.0% |
| AGAGGGGTTCATTGCCTCCC+CGG | + | chr3.3:55647176-55647195 | None:intergenic | 60.0% | |
| CCGTCTCCCCGACGACATTA+TGG | - | chr3.3:55644834-55644853 | MS.gene008480:CDS | 60.0% | |
| CCTCCGGTTAAGGGATCGGA+AGG | + | chr3.3:55644868-55644887 | None:intergenic | 60.0% | |
| CCTTCCGATCCCTTAACCGG+AGG | - | chr3.3:55644865-55644884 | MS.gene008480:CDS | 60.0% | |
| CTTCGGATCCGATCTCGTCG+AGG | + | chr3.3:55644909-55644928 | None:intergenic | 60.0% | |
| GAGGATCCGCCTCCGGTTAA+GGG | + | chr3.3:55644877-55644896 | None:intergenic | 60.0% | |
| GCTGCCGCGAATGAAGACGT+TGG | + | chr3.3:55644740-55644759 | None:intergenic | 60.0% | |
| TCCGATCCCTTAACCGGAGG+CGG | - | chr3.3:55644868-55644887 | MS.gene008480:CDS | 60.0% | |
| TCCGATCTCGTCGAGGCTAG+CGG | + | chr3.3:55644902-55644921 | None:intergenic | 60.0% | |
| TCCGCCTCCGGTTAAGGGAT+CGG | + | chr3.3:55644872-55644891 | None:intergenic | 60.0% | |
| ! | ACCGCTAGCCTCGACGAGAT+CGG | - | chr3.3:55644898-55644917 | MS.gene008480:CDS | 60.0% |
| ! | TACGATAATTGCGCCGGCGC+CGG | - | chr3.3:55645006-55645025 | MS.gene008480:CDS | 60.0% |
| ATTCCCACTCGTTCCGGCGC+CGG | + | chr3.3:55645028-55645047 | None:intergenic | 65.0% | |
| GATCTCGTCGAGGCTAGCGG+TGG | + | chr3.3:55644899-55644918 | None:intergenic | 65.0% | |
| GGAGGATCCGCCTCCGGTTA+AGG | + | chr3.3:55644878-55644897 | None:intergenic | 65.0% | |
| GTGGTGAGAGTGGGGTTCGC+CGG | + | chr3.3:55644788-55644807 | None:intergenic | 65.0% | |
| ! | TTTCGGATTGGGCGCGACGG+TGG | + | chr3.3:55644807-55644826 | None:intergenic | 65.0% |
| AGAGTGGGGTTCGCCGGCGA+CGG | + | chr3.3:55644782-55644801 | None:intergenic | 70.0% | |
| AGCGGTGGAGGATCCGCCTC+CGG | + | chr3.3:55644884-55644903 | None:intergenic | 70.0% | |
| CTCGTCGAGGCTAGCGGTGG+AGG | + | chr3.3:55644896-55644915 | None:intergenic | 70.0% | |
| GCGCGACGGTGGTGAGAGTG+GGG | + | chr3.3:55644796-55644815 | None:intergenic | 70.0% | |
| GGCGCGACGGTGGTGAGAGT+GGG | + | chr3.3:55644797-55644816 | None:intergenic | 70.0% | |
| GGCGTCTCCACCACCGTCGC+CGG | - | chr3.3:55644766-55644785 | MS.gene008480:CDS | 75.0% | |
| GGGCGCGACGGTGGTGAGAG+TGG | + | chr3.3:55644798-55644817 | None:intergenic | 75.0% | |
| ! | GGGTTCGCCGGCGACGGTGG+TGG | + | chr3.3:55644776-55644795 | None:intergenic | 80.0% |
| ! | GTGGGGTTCGCCGGCGACGG+TGG | + | chr3.3:55644779-55644798 | None:intergenic | 80.0% |
| !! | GCGCCGGCGCCGGAACGAGT+GGG | - | chr3.3:55645022-55645041 | MS.gene008480:CDS | 80.0% |
| !!! | AATTGCGCCGGCGCCGGCGC+CGG | - | chr3.3:55645012-55645031 | MS.gene008480:CDS | 80.0% |
| !!! | ACTCGTTCCGGCGCCGGCGC+CGG | + | chr3.3:55645022-55645041 | None:intergenic | 80.0% |
| !!! | GGCGCCGGCGCCGGAACGAG+TGG | - | chr3.3:55645021-55645040 | MS.gene008480:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 55644700 | 55647492 | 55644700 | ID=MS.gene008480 |
| chr3.3 | mRNA | 55644700 | 55647492 | 55644700 | ID=MS.gene008480.t1;Parent=MS.gene008480 |
| chr3.3 | exon | 55646963 | 55647492 | 55646963 | ID=MS.gene008480.t1.exon1;Parent=MS.gene008480.t1 |
| chr3.3 | CDS | 55646963 | 55647492 | 55646963 | ID=cds.MS.gene008480.t1;Parent=MS.gene008480.t1 |
| chr3.3 | exon | 55645923 | 55646055 | 55645923 | ID=MS.gene008480.t1.exon2;Parent=MS.gene008480.t1 |
| chr3.3 | CDS | 55645923 | 55646055 | 55645923 | ID=cds.MS.gene008480.t1;Parent=MS.gene008480.t1 |
| chr3.3 | exon | 55645272 | 55645356 | 55645272 | ID=MS.gene008480.t1.exon3;Parent=MS.gene008480.t1 |
| chr3.3 | CDS | 55645272 | 55645356 | 55645272 | ID=cds.MS.gene008480.t1;Parent=MS.gene008480.t1 |
| chr3.3 | exon | 55644700 | 55645067 | 55644700 | ID=MS.gene008480.t1.exon4;Parent=MS.gene008480.t1 |
| chr3.3 | CDS | 55644700 | 55645067 | 55644700 | ID=cds.MS.gene008480.t1;Parent=MS.gene008480.t1 |
| Gene Sequence |
| Protein sequence |
