Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008482.t1 | PNX83460.1 | 56.8 | 234 | 91 | 4 | 1 | 225 | 1 | 233 | 3.50E-64 | 255 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008482.t1 | Q9FJK3 | 51.6 | 155 | 74 | 1 | 1 | 155 | 1 | 154 | 8.1e-38 | 158.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008482.t1 | A0A2K3LY46 | 56.8 | 234 | 91 | 4 | 1 | 225 | 1 | 233 | 2.5e-64 | 255.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene008482.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008482.t1 | MTR_4g032620 | 56.780 | 236 | 96 | 2 | 1 | 236 | 1 | 230 | 2.83e-94 | 276 |
| MS.gene008482.t1 | MTR_8g036130 | 56.048 | 248 | 95 | 4 | 1 | 236 | 1 | 246 | 8.30e-88 | 260 |
| MS.gene008482.t1 | MTR_4g031910 | 51.883 | 239 | 101 | 3 | 1 | 236 | 1 | 228 | 1.47e-75 | 228 |
| MS.gene008482.t1 | MTR_4g032290 | 53.498 | 243 | 93 | 4 | 1 | 236 | 1 | 230 | 4.59e-74 | 224 |
| MS.gene008482.t1 | MTR_3g065100 | 52.301 | 239 | 108 | 3 | 1 | 234 | 1 | 238 | 4.18e-66 | 205 |
| MS.gene008482.t1 | MTR_4g032260 | 59.615 | 156 | 63 | 0 | 1 | 156 | 1 | 156 | 3.34e-52 | 166 |
| MS.gene008482.t1 | MTR_3g466980 | 41.322 | 242 | 112 | 7 | 1 | 233 | 1 | 221 | 1.64e-50 | 164 |
| MS.gene008482.t1 | MTR_2g035610 | 65.289 | 121 | 42 | 0 | 1 | 121 | 1 | 121 | 3.31e-46 | 150 |
| MS.gene008482.t1 | MTR_3g466830 | 46.358 | 151 | 80 | 1 | 3 | 153 | 2 | 151 | 1.44e-43 | 144 |
| MS.gene008482.t1 | MTR_3g466890 | 42.949 | 156 | 88 | 1 | 3 | 158 | 2 | 156 | 1.53e-39 | 134 |
| MS.gene008482.t1 | MTR_4g063790 | 42.581 | 155 | 89 | 0 | 1 | 155 | 1 | 155 | 3.50e-37 | 128 |
| MS.gene008482.t1 | MTR_3g031100 | 41.026 | 156 | 92 | 0 | 1 | 156 | 1 | 156 | 9.42e-35 | 124 |
| MS.gene008482.t1 | MTR_3g467080 | 37.179 | 156 | 98 | 0 | 1 | 156 | 1 | 156 | 3.04e-33 | 118 |
| MS.gene008482.t1 | MTR_5g047580 | 41.026 | 156 | 90 | 2 | 1 | 156 | 1 | 154 | 3.76e-33 | 117 |
| MS.gene008482.t1 | MTR_2g016210 | 38.235 | 170 | 99 | 1 | 1 | 170 | 1 | 164 | 3.43e-32 | 117 |
| MS.gene008482.t1 | MTR_5g075380 | 38.961 | 154 | 93 | 1 | 1 | 154 | 1 | 153 | 6.05e-32 | 115 |
| MS.gene008482.t1 | MTR_1g090783 | 42.857 | 147 | 82 | 2 | 3 | 149 | 2 | 146 | 1.33e-31 | 114 |
| MS.gene008482.t1 | MTR_1g090697 | 37.342 | 158 | 97 | 2 | 1 | 158 | 1 | 156 | 6.58e-31 | 112 |
| MS.gene008482.t1 | MTR_3g031240 | 34.177 | 158 | 104 | 0 | 1 | 158 | 1 | 158 | 1.22e-28 | 107 |
| MS.gene008482.t1 | MTR_1g090710 | 36.076 | 158 | 100 | 1 | 1 | 158 | 1 | 157 | 7.12e-28 | 104 |
| MS.gene008482.t1 | MTR_4g032270 | 49.057 | 106 | 39 | 3 | 135 | 236 | 36 | 130 | 2.83e-27 | 102 |
| MS.gene008482.t1 | MTR_3g466900 | 36.800 | 125 | 78 | 1 | 34 | 158 | 4 | 127 | 3.72e-27 | 101 |
| MS.gene008482.t1 | MTR_1g077390 | 37.013 | 154 | 95 | 2 | 1 | 154 | 1 | 152 | 4.71e-27 | 102 |
| MS.gene008482.t1 | MTR_7g055800 | 48.739 | 119 | 33 | 3 | 1 | 119 | 1 | 91 | 7.45e-27 | 99.8 |
| MS.gene008482.t1 | MTR_4g028800 | 65.278 | 72 | 23 | 1 | 1 | 72 | 1 | 70 | 1.50e-26 | 98.2 |
| MS.gene008482.t1 | MTR_1g084950 | 39.103 | 156 | 93 | 2 | 1 | 156 | 1 | 154 | 1.46e-25 | 98.2 |
| MS.gene008482.t1 | MTR_7g011950 | 39.744 | 156 | 92 | 2 | 1 | 156 | 1 | 154 | 1.74e-25 | 98.2 |
| MS.gene008482.t1 | MTR_4g028720 | 39.103 | 156 | 93 | 2 | 1 | 156 | 1 | 154 | 3.63e-25 | 97.4 |
| MS.gene008482.t1 | MTR_1g077320 | 39.744 | 156 | 92 | 2 | 1 | 156 | 1 | 154 | 6.66e-25 | 96.7 |
| MS.gene008482.t1 | MTR_2g035580 | 40.385 | 156 | 92 | 1 | 1 | 156 | 1 | 155 | 5.09e-24 | 94.4 |
| MS.gene008482.t1 | MTR_3g465410 | 38.889 | 126 | 77 | 0 | 29 | 154 | 1 | 126 | 7.87e-24 | 93.6 |
| MS.gene008482.t1 | MTR_1g077300 | 39.610 | 154 | 89 | 2 | 1 | 154 | 1 | 150 | 1.22e-23 | 93.2 |
| MS.gene008482.t1 | MTR_3g466930 | 34.400 | 125 | 81 | 1 | 34 | 158 | 4 | 127 | 1.46e-23 | 92.4 |
| MS.gene008482.t1 | MTR_7g055790 | 47.748 | 111 | 40 | 2 | 1 | 111 | 59 | 151 | 8.59e-20 | 83.2 |
| MS.gene008482.t1 | MTR_7g055940 | 45.283 | 106 | 30 | 3 | 1 | 106 | 1 | 78 | 1.71e-19 | 80.1 |
| MS.gene008482.t1 | MTR_3g093900 | 26.702 | 191 | 128 | 3 | 1 | 187 | 4 | 186 | 2.26e-19 | 87.0 |
| MS.gene008482.t1 | MTR_5g047560 | 33.974 | 156 | 85 | 4 | 1 | 156 | 1 | 138 | 6.54e-19 | 80.5 |
| MS.gene008482.t1 | MTR_7g106510 | 31.008 | 129 | 89 | 0 | 1 | 129 | 4 | 132 | 8.76e-19 | 85.1 |
| MS.gene008482.t1 | MTR_4g019670 | 30.894 | 123 | 85 | 0 | 3 | 125 | 6 | 128 | 2.74e-17 | 80.9 |
| MS.gene008482.t1 | MTR_2g035590 | 56.790 | 81 | 35 | 0 | 79 | 159 | 6 | 86 | 2.51e-16 | 72.4 |
| MS.gene008482.t1 | MTR_6g018920 | 31.056 | 161 | 96 | 6 | 1 | 155 | 1 | 152 | 6.01e-12 | 64.7 |
| MS.gene008482.t1 | MTR_4g084780 | 56.863 | 51 | 22 | 0 | 75 | 125 | 2 | 52 | 1.09e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008482.t1 | AT5G48670 | 51.613 | 155 | 74 | 1 | 1 | 155 | 1 | 154 | 3.58e-44 | 151 |
| MS.gene008482.t1 | AT5G26630 | 41.327 | 196 | 107 | 3 | 1 | 196 | 1 | 188 | 1.39e-36 | 128 |
| MS.gene008482.t1 | AT1G65300 | 42.484 | 153 | 87 | 1 | 3 | 155 | 2 | 153 | 1.52e-31 | 117 |
| MS.gene008482.t1 | AT5G26650 | 41.830 | 153 | 88 | 1 | 4 | 156 | 2 | 153 | 1.67e-31 | 119 |
| MS.gene008482.t1 | AT3G05860 | 40.881 | 159 | 87 | 3 | 1 | 152 | 1 | 159 | 3.14e-30 | 112 |
| MS.gene008482.t1 | AT5G27960 | 40.523 | 153 | 90 | 1 | 4 | 156 | 2 | 153 | 3.57e-30 | 114 |
| MS.gene008482.t1 | AT3G05860 | 40.881 | 159 | 87 | 3 | 1 | 152 | 1 | 159 | 8.66e-30 | 112 |
| MS.gene008482.t1 | AT3G05860 | 40.881 | 159 | 87 | 3 | 1 | 152 | 1 | 159 | 9.64e-30 | 112 |
| MS.gene008482.t1 | AT1G65330 | 41.830 | 153 | 88 | 1 | 3 | 155 | 2 | 153 | 8.52e-29 | 110 |
| MS.gene008482.t1 | AT1G31630 | 37.838 | 148 | 90 | 2 | 3 | 150 | 2 | 147 | 1.20e-28 | 110 |
| MS.gene008482.t1 | AT5G27810 | 49.462 | 93 | 47 | 0 | 29 | 121 | 1 | 93 | 1.69e-26 | 99.8 |
| MS.gene008482.t1 | AT1G31640 | 35.762 | 151 | 95 | 2 | 3 | 153 | 2 | 150 | 3.23e-25 | 103 |
| MS.gene008482.t1 | AT2G28700 | 32.836 | 201 | 127 | 4 | 1 | 198 | 1 | 196 | 5.12e-25 | 100 |
| MS.gene008482.t1 | AT5G26580 | 36.774 | 155 | 83 | 2 | 1 | 155 | 1 | 140 | 9.33e-23 | 95.1 |
| MS.gene008482.t1 | AT1G22590 | 35.443 | 158 | 94 | 2 | 1 | 156 | 1 | 152 | 1.55e-22 | 90.5 |
| MS.gene008482.t1 | AT2G40210 | 39.604 | 101 | 61 | 0 | 1 | 101 | 1 | 101 | 1.73e-17 | 80.9 |
| MS.gene008482.t1 | AT5G55690 | 30.172 | 232 | 117 | 8 | 1 | 212 | 1 | 207 | 1.49e-15 | 74.3 |
| MS.gene008482.t1 | AT5G55690 | 30.172 | 232 | 117 | 8 | 1 | 212 | 1 | 207 | 1.49e-15 | 74.3 |
| MS.gene008482.t1 | AT5G06500 | 31.410 | 156 | 105 | 1 | 1 | 156 | 1 | 154 | 3.44e-14 | 70.1 |
| MS.gene008482.t1 | AT5G58890 | 37.692 | 130 | 68 | 5 | 1 | 120 | 1 | 127 | 6.29e-14 | 70.1 |
Find 66 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGCATACGATGTAATTTA+TGG | 0.182564 | 3.3:-55618746 | MS.gene008482:CDS |
| ATAATGTCAGCATTATTTAT+AGG | 0.257317 | 3.3:+55618281 | None:intergenic |
| AAAGGGTGCTCTCAAACTTT+AGG | 0.264431 | 3.3:-55618676 | MS.gene008482:CDS |
| AAGATAAACTGGCGAAATTA+AGG | 0.283159 | 3.3:-55618577 | MS.gene008482:CDS |
| CTCTTGATTTGCCATTTGTT+TGG | 0.294475 | 3.3:+55618631 | None:intergenic |
| GGAAAACAACGTATAATAAA+AGG | 0.303343 | 3.3:-55618820 | MS.gene008482:CDS |
| AAGGGTGCTCTCAAACTTTA+GGG | 0.347136 | 3.3:-55618675 | MS.gene008482:CDS |
| TACCAAGGTCCTTCAATTTG+TGG | 0.355617 | 3.3:+55618438 | None:intergenic |
| CATTGTCATTTCCTCATTCG+TGG | 0.373285 | 3.3:+55618328 | None:intergenic |
| TGTTTGGTTTGTATAACTTC+AGG | 0.374091 | 3.3:+55618647 | None:intergenic |
| CCCTTTGGTGAAGTCGATCC+TGG | 0.377842 | 3.3:-55618203 | MS.gene008482:CDS |
| GAAATTAAGGAAGGACAATA+AGG | 0.381252 | 3.3:-55618564 | MS.gene008482:CDS |
| GTGGTTGATTTGAATTATCT+TGG | 0.384051 | 3.3:-55618473 | MS.gene008482:CDS |
| CTTTCGCTTTCAAAACCCTT+TGG | 0.384247 | 3.3:+55618597 | None:intergenic |
| AACCTCAGGTTGAGGTTCAT+AGG | 0.395757 | 3.3:+55618721 | None:intergenic |
| TTTGAAAGCGAAAGATAAAC+TGG | 0.405272 | 3.3:-55618588 | MS.gene008482:CDS |
| TTCATTCAAAGAAGTAGGTT+GGG | 0.410567 | 3.3:+55618173 | None:intergenic |
| AATTGAAGGACCTTGGTAGA+AGG | 0.412835 | 3.3:-55618433 | MS.gene008482:CDS |
| ATGAACCTCAACCTGAGGTT+TGG | 0.442477 | 3.3:-55618718 | MS.gene008482:CDS |
| TTGGTAGAAGGTTGGAATCA+TGG | 0.444725 | 3.3:-55618421 | MS.gene008482:CDS |
| ACCTCAGGTTGAGGTTCATA+GGG | 0.446591 | 3.3:+55618722 | None:intergenic |
| CATCACCATGTGAAGTCAAA+AGG | 0.449362 | 3.3:-55618694 | MS.gene008482:CDS |
| TTTGATCAATGTCTTTATGC+AGG | 0.450902 | 3.3:-55618521 | MS.gene008482:CDS |
| TTTCATTCAAAGAAGTAGGT+TGG | 0.451367 | 3.3:+55618172 | None:intergenic |
| AAGTCAAGACCAACTACAAT+TGG | 0.453077 | 3.3:-55618372 | MS.gene008482:CDS |
| TATGAAATAAGCACACTTTG+TGG | 0.453305 | 3.3:-55618773 | MS.gene008482:CDS |
| TTTATGAACTTGATGATGAA+TGG | 0.460764 | 3.3:-55618245 | MS.gene008482:CDS |
| ACGATTTCATTCAAAGAAGT+AGG | 0.461513 | 3.3:+55618168 | None:intergenic |
| TTGATTTGAATTATCTTGGT+TGG | 0.461781 | 3.3:-55618469 | MS.gene008482:CDS |
| CATGGTGATGGCCAAACCTC+AGG | 0.485308 | 3.3:+55618707 | None:intergenic |
| TCCTCATTCGTGGATGGTGG+TGG | 0.487902 | 3.3:+55618338 | None:intergenic |
| TAATGCTGACATTATTGAAA+GGG | 0.488965 | 3.3:-55618273 | MS.gene008482:CDS |
| AGTAGGTTGGGCAAAACTCC+AGG | 0.489606 | 3.3:+55618185 | None:intergenic |
| GTCATTTCCTCATTCGTGGA+TGG | 0.494180 | 3.3:+55618332 | None:intergenic |
| GTTGATAGACCACAAATTGA+AGG | 0.494814 | 3.3:-55618447 | MS.gene008482:CDS |
| AGTTATACAAACCAAACAAA+TGG | 0.499169 | 3.3:-55618642 | MS.gene008482:CDS |
| TGGTAGAAGGTTGGAATCAT+GGG | 0.503221 | 3.3:-55618420 | MS.gene008482:CDS |
| ATCGACTTCACCAAAGGGTA+TGG | 0.509298 | 3.3:+55618208 | None:intergenic |
| AGCAGCATCATTCACAATGA+AGG | 0.521185 | 3.3:+55618844 | None:intergenic |
| GAAGGACCTTGGTAGAAGGT+TGG | 0.528423 | 3.3:-55618429 | MS.gene008482:CDS |
| TGATGAATCATGGCCATGTT+GGG | 0.528819 | 3.3:-55618307 | MS.gene008482:CDS |
| GGGGATGATACCATACCCTT+TGG | 0.549429 | 3.3:-55618218 | MS.gene008482:CDS |
| AGAGACTTTCATGAACCAAA+GGG | 0.550845 | 3.3:-55618612 | MS.gene008482:CDS |
| ATCACCATGTGAAGTCAAAA+GGG | 0.555553 | 3.3:-55618693 | MS.gene008482:CDS |
| AACTTGATGATGAATGGTGA+TGG | 0.556175 | 3.3:-55618239 | MS.gene008482:CDS |
| AAGAGACTTTCATGAACCAA+AGG | 0.558441 | 3.3:-55618613 | MS.gene008482:CDS |
| GCAGTGGAACCAATTGTAGT+TGG | 0.559110 | 3.3:+55618363 | None:intergenic |
| ATAATGCTGACATTATTGAA+AGG | 0.562300 | 3.3:-55618274 | MS.gene008482:CDS |
| CCAGGATCGACTTCACCAAA+GGG | 0.564091 | 3.3:+55618203 | None:intergenic |
| GACCACAAATTGAAGGACCT+TGG | 0.566187 | 3.3:-55618440 | MS.gene008482:CDS |
| TATTTATAGGCAACCCAACA+TGG | 0.573445 | 3.3:+55618294 | None:intergenic |
| ACCACCACCATCCACGAATG+AGG | 0.577994 | 3.3:-55618339 | MS.gene008482:CDS |
| GAAATGACAATGATGAATCA+TGG | 0.579997 | 3.3:-55618317 | MS.gene008482:CDS |
| TCCAGGATCGACTTCACCAA+AGG | 0.583170 | 3.3:+55618202 | None:intergenic |
| ACTTGATGATGAATGGTGAT+GGG | 0.583295 | 3.3:-55618238 | MS.gene008482:CDS |
| ATGATTCCAACCTTCTACCA+AGG | 0.601006 | 3.3:+55618423 | None:intergenic |
| ATGATGAATCATGGCCATGT+TGG | 0.605921 | 3.3:-55618308 | MS.gene008482:CDS |
| GATGGCCAAACCTCAGGTTG+AGG | 0.606351 | 3.3:+55618713 | None:intergenic |
| ATTTCCTCATTCGTGGATGG+TGG | 0.617926 | 3.3:+55618335 | None:intergenic |
| TCATTGTGAATGATGCTGCT+AGG | 0.625727 | 3.3:-55618841 | MS.gene008482:CDS |
| TAAACTGGCGAAATTAAGGA+AGG | 0.626838 | 3.3:-55618573 | MS.gene008482:CDS |
| GTGGATGGTGGTGGTAGCAG+TGG | 0.627705 | 3.3:+55618347 | None:intergenic |
| CCCCTATGAACCTCAACCTG+AGG | 0.641725 | 3.3:-55618723 | MS.gene008482:CDS |
| CTTGATGATGAATGGTGATG+GGG | 0.653561 | 3.3:-55618237 | MS.gene008482:CDS |
| CCTCAGGTTGAGGTTCATAG+GGG | 0.720052 | 3.3:+55618723 | None:intergenic |
| TGTGAACAACGATATGTCAG+TGG | 0.740913 | 3.3:-55618492 | MS.gene008482:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATGTCAGCATTATTTAT+AGG | + | chr3.3:55618769-55618788 | None:intergenic | 20.0% |
| ! | AGTTATACAAACCAAACAAA+TGG | - | chr3.3:55618405-55618424 | MS.gene008482:CDS | 25.0% |
| ! | ATAATGCTGACATTATTGAA+AGG | - | chr3.3:55618773-55618792 | MS.gene008482:CDS | 25.0% |
| ! | GGAAAACAACGTATAATAAA+AGG | - | chr3.3:55618227-55618246 | MS.gene008482:CDS | 25.0% |
| ! | TAATGCTGACATTATTGAAA+GGG | - | chr3.3:55618774-55618793 | MS.gene008482:CDS | 25.0% |
| !! | TTGATTTGAATTATCTTGGT+TGG | - | chr3.3:55618578-55618597 | MS.gene008482:CDS | 25.0% |
| !!! | TTTATGAACTTGATGATGAA+TGG | - | chr3.3:55618802-55618821 | MS.gene008482:CDS | 25.0% |
| AAGATAAACTGGCGAAATTA+AGG | - | chr3.3:55618470-55618489 | MS.gene008482:CDS | 30.0% | |
| CAAGCATACGATGTAATTTA+TGG | - | chr3.3:55618301-55618320 | MS.gene008482:CDS | 30.0% | |
| GAAATGACAATGATGAATCA+TGG | - | chr3.3:55618730-55618749 | MS.gene008482:CDS | 30.0% | |
| GAAATTAAGGAAGGACAATA+AGG | - | chr3.3:55618483-55618502 | MS.gene008482:CDS | 30.0% | |
| TATGAAATAAGCACACTTTG+TGG | - | chr3.3:55618274-55618293 | MS.gene008482:CDS | 30.0% | |
| TTTGAAAGCGAAAGATAAAC+TGG | - | chr3.3:55618459-55618478 | MS.gene008482:CDS | 30.0% | |
| TTTGATCAATGTCTTTATGC+AGG | - | chr3.3:55618526-55618545 | MS.gene008482:CDS | 30.0% | |
| !! | GTGGTTGATTTGAATTATCT+TGG | - | chr3.3:55618574-55618593 | MS.gene008482:CDS | 30.0% |
| !! | TGTTTGGTTTGTATAACTTC+AGG | + | chr3.3:55618403-55618422 | None:intergenic | 30.0% |
| AAGAGACTTTCATGAACCAA+AGG | - | chr3.3:55618434-55618453 | MS.gene008482:CDS | 35.0% | |
| AAGTCAAGACCAACTACAAT+TGG | - | chr3.3:55618675-55618694 | MS.gene008482:CDS | 35.0% | |
| AGAGACTTTCATGAACCAAA+GGG | - | chr3.3:55618435-55618454 | MS.gene008482:CDS | 35.0% | |
| ATCACCATGTGAAGTCAAAA+GGG | - | chr3.3:55618354-55618373 | MS.gene008482:CDS | 35.0% | |
| TAAACTGGCGAAATTAAGGA+AGG | - | chr3.3:55618474-55618493 | MS.gene008482:CDS | 35.0% | |
| TATTTATAGGCAACCCAACA+TGG | + | chr3.3:55618756-55618775 | None:intergenic | 35.0% | |
| ! | GTTGATAGACCACAAATTGA+AGG | - | chr3.3:55618600-55618619 | MS.gene008482:CDS | 35.0% |
| !! | AACTTGATGATGAATGGTGA+TGG | - | chr3.3:55618808-55618827 | MS.gene008482:CDS | 35.0% |
| !! | ACTTGATGATGAATGGTGAT+GGG | - | chr3.3:55618809-55618828 | MS.gene008482:CDS | 35.0% |
| !! | CTCTTGATTTGCCATTTGTT+TGG | + | chr3.3:55618419-55618438 | None:intergenic | 35.0% |
| AATTGAAGGACCTTGGTAGA+AGG | - | chr3.3:55618614-55618633 | MS.gene008482:CDS | 40.0% | |
| AGCAGCATCATTCACAATGA+AGG | + | chr3.3:55618206-55618225 | None:intergenic | 40.0% | |
| ATGATGAATCATGGCCATGT+TGG | - | chr3.3:55618739-55618758 | MS.gene008482:CDS | 40.0% | |
| ATGATTCCAACCTTCTACCA+AGG | + | chr3.3:55618627-55618646 | None:intergenic | 40.0% | |
| CATCACCATGTGAAGTCAAA+AGG | - | chr3.3:55618353-55618372 | MS.gene008482:CDS | 40.0% | |
| CTTTCGCTTTCAAAACCCTT+TGG | + | chr3.3:55618453-55618472 | None:intergenic | 40.0% | |
| TACCAAGGTCCTTCAATTTG+TGG | + | chr3.3:55618612-55618631 | None:intergenic | 40.0% | |
| TCATTGTGAATGATGCTGCT+AGG | - | chr3.3:55618206-55618225 | MS.gene008482:CDS | 40.0% | |
| TGATGAATCATGGCCATGTT+GGG | - | chr3.3:55618740-55618759 | MS.gene008482:CDS | 40.0% | |
| TGGTAGAAGGTTGGAATCAT+GGG | - | chr3.3:55618627-55618646 | MS.gene008482:CDS | 40.0% | |
| TGTGAACAACGATATGTCAG+TGG | - | chr3.3:55618555-55618574 | MS.gene008482:CDS | 40.0% | |
| TTGGTAGAAGGTTGGAATCA+TGG | - | chr3.3:55618626-55618645 | MS.gene008482:CDS | 40.0% | |
| ! | CATTGTCATTTCCTCATTCG+TGG | + | chr3.3:55618722-55618741 | None:intergenic | 40.0% |
| !! | AAAGGGTGCTCTCAAACTTT+AGG | - | chr3.3:55618371-55618390 | MS.gene008482:CDS | 40.0% |
| !! | AAGGGTGCTCTCAAACTTTA+GGG | - | chr3.3:55618372-55618391 | MS.gene008482:CDS | 40.0% |
| !! | CTTGATGATGAATGGTGATG+GGG | - | chr3.3:55618810-55618829 | MS.gene008482:CDS | 40.0% |
| !!! | CTTTTGACTTCACATGGTGA+TGG | + | chr3.3:55618355-55618374 | None:intergenic | 40.0% |
| ATGAACCTCAACCTGAGGTT+TGG | - | chr3.3:55618329-55618348 | MS.gene008482:CDS | 45.0% | |
| ATTTCCTCATTCGTGGATGG+TGG | + | chr3.3:55618715-55618734 | None:intergenic | 45.0% | |
| GACCACAAATTGAAGGACCT+TGG | - | chr3.3:55618607-55618626 | MS.gene008482:CDS | 45.0% | |
| GCAGTGGAACCAATTGTAGT+TGG | + | chr3.3:55618687-55618706 | None:intergenic | 45.0% | |
| GTCATTTCCTCATTCGTGGA+TGG | + | chr3.3:55618718-55618737 | None:intergenic | 45.0% | |
| ! | ATCGACTTCACCAAAGGGTA+TGG | + | chr3.3:55618842-55618861 | None:intergenic | 45.0% |
| !! | AACCTCAGGTTGAGGTTCAT+AGG | + | chr3.3:55618329-55618348 | None:intergenic | 45.0% |
| !! | ACCTCAGGTTGAGGTTCATA+GGG | + | chr3.3:55618328-55618347 | None:intergenic | 45.0% |
| !!! | AGCACCCTTTTGACTTCACA+TGG | + | chr3.3:55618361-55618380 | None:intergenic | 45.0% |
| GAAGGACCTTGGTAGAAGGT+TGG | - | chr3.3:55618618-55618637 | MS.gene008482:CDS | 50.0% | |
| GGGGATGATACCATACCCTT+TGG | - | chr3.3:55618829-55618848 | MS.gene008482:CDS | 50.0% | |
| ! | AGTAGGTTGGGCAAAACTCC+AGG | + | chr3.3:55618865-55618884 | None:intergenic | 50.0% |
| ! | CCAGGATCGACTTCACCAAA+GGG | + | chr3.3:55618847-55618866 | None:intergenic | 50.0% |
| ! | TCCAGGATCGACTTCACCAA+AGG | + | chr3.3:55618848-55618867 | None:intergenic | 50.0% |
| !! | CCTCAGGTTGAGGTTCATAG+GGG | + | chr3.3:55618327-55618346 | None:intergenic | 50.0% |
| ACCACCACCATCCACGAATG+AGG | - | chr3.3:55618708-55618727 | MS.gene008482:CDS | 55.0% | |
| CCCCTATGAACCTCAACCTG+AGG | - | chr3.3:55618324-55618343 | MS.gene008482:CDS | 55.0% | |
| CCCTTTGGTGAAGTCGATCC+TGG | - | chr3.3:55618844-55618863 | MS.gene008482:CDS | 55.0% | |
| ! | GATGGCCAAACCTCAGGTTG+AGG | + | chr3.3:55618337-55618356 | None:intergenic | 55.0% |
| ! | TCCTCATTCGTGGATGGTGG+TGG | + | chr3.3:55618712-55618731 | None:intergenic | 55.0% |
| !! | CATGGTGATGGCCAAACCTC+AGG | + | chr3.3:55618343-55618362 | None:intergenic | 55.0% |
| !! | GTGGATGGTGGTGGTAGCAG+TGG | + | chr3.3:55618703-55618722 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 55618178 | 55618891 | 55618178 | ID=MS.gene008482 |
| chr3.3 | mRNA | 55618178 | 55618891 | 55618178 | ID=MS.gene008482.t1;Parent=MS.gene008482 |
| chr3.3 | exon | 55618178 | 55618891 | 55618178 | ID=MS.gene008482.t1.exon1;Parent=MS.gene008482.t1 |
| chr3.3 | CDS | 55618178 | 55618891 | 55618178 | ID=cds.MS.gene008482.t1;Parent=MS.gene008482.t1 |
| Gene Sequence |
| Protein sequence |
