Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008499.t1 | RHN72439.1 | 73.9 | 873 | 92 | 2 | 1 | 737 | 1 | 873 | 0.00E+00 | 1186.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008499.t1 | Q9SZL8 | 24.0 | 601 | 312 | 7 | 79 | 537 | 77 | 674 | 5.6e-45 | 184.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008499.t1 | A0A396J342 | 73.9 | 873 | 92 | 2 | 1 | 737 | 1 | 873 | 0.0e+00 | 1186.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene008499.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008499.t1 | MTR_1g050570 | 88.953 | 172 | 16 | 1 | 546 | 714 | 1 | 172 | 7.09e-89 | 276 |
MS.gene008499.t1 | MTR_7g446520 | 57.895 | 228 | 74 | 2 | 58 | 281 | 71 | 280 | 9.07e-84 | 269 |
MS.gene008499.t1 | MTR_7g028855 | 52.995 | 217 | 87 | 3 | 4 | 218 | 60 | 263 | 1.17e-67 | 230 |
MS.gene008499.t1 | MTR_7g446480 | 75.410 | 122 | 30 | 0 | 152 | 273 | 140 | 261 | 1.04e-57 | 199 |
MS.gene008499.t1 | MTR_7g446510 | 74.590 | 122 | 31 | 0 | 152 | 273 | 155 | 276 | 1.28e-55 | 194 |
MS.gene008499.t1 | MTR_7g446510 | 69.231 | 52 | 16 | 0 | 280 | 331 | 1 | 52 | 6.85e-17 | 83.2 |
MS.gene008499.t1 | MTR_7g446510 | 36.885 | 122 | 63 | 2 | 401 | 522 | 48 | 155 | 8.52e-16 | 79.7 |
MS.gene008499.t1 | MTR_8g467420 | 77.165 | 127 | 29 | 0 | 2 | 128 | 5 | 131 | 2.15e-47 | 166 |
MS.gene008499.t1 | MTR_1g070355 | 32.683 | 205 | 136 | 1 | 66 | 270 | 65 | 267 | 4.56e-33 | 135 |
MS.gene008499.t1 | MTR_5g076070 | 30.392 | 204 | 140 | 1 | 67 | 270 | 45 | 246 | 1.29e-29 | 119 |
MS.gene008499.t1 | MTR_0645s0010 | 41.129 | 124 | 70 | 1 | 317 | 440 | 1 | 121 | 2.42e-27 | 107 |
MS.gene008499.t1 | MTR_6g022080 | 29.070 | 172 | 122 | 0 | 66 | 237 | 76 | 247 | 1.98e-22 | 97.8 |
MS.gene008499.t1 | MTR_0402s0040 | 32.243 | 214 | 120 | 7 | 43 | 251 | 7 | 200 | 1.90e-21 | 99.0 |
MS.gene008499.t1 | MTR_6g051425 | 28.571 | 189 | 131 | 3 | 85 | 270 | 27 | 214 | 9.43e-21 | 94.7 |
MS.gene008499.t1 | MTR_4g035820 | 28.767 | 292 | 187 | 11 | 81 | 357 | 81 | 366 | 9.97e-21 | 97.4 |
MS.gene008499.t1 | MTR_8g468460 | 42.857 | 98 | 55 | 1 | 361 | 458 | 9 | 105 | 1.38e-17 | 79.3 |
MS.gene008499.t1 | MTR_6g022070 | 30.657 | 137 | 95 | 0 | 276 | 412 | 38 | 174 | 1.28e-14 | 76.3 |
MS.gene008499.t1 | MTR_1g008290 | 30.894 | 123 | 80 | 2 | 135 | 257 | 10 | 127 | 1.71e-14 | 71.6 |
MS.gene008499.t1 | MTR_6g053140 | 28.409 | 176 | 111 | 4 | 15 | 186 | 40 | 204 | 2.33e-13 | 70.5 |
MS.gene008499.t1 | MTR_0060s0090 | 32.812 | 128 | 77 | 2 | 30 | 157 | 20 | 138 | 1.40e-12 | 66.6 |
MS.gene008499.t1 | MTR_3g080590 | 49.123 | 57 | 29 | 0 | 68 | 124 | 98 | 154 | 3.10e-11 | 62.8 |
MS.gene008499.t1 | MTR_5g015480 | 33.588 | 131 | 80 | 3 | 69 | 196 | 50 | 176 | 4.03e-11 | 64.7 |
MS.gene008499.t1 | MTR_2g101460 | 31.200 | 125 | 86 | 0 | 66 | 190 | 46 | 170 | 4.51e-11 | 63.5 |
MS.gene008499.t1 | MTR_2g101460 | 31.200 | 125 | 86 | 0 | 66 | 190 | 36 | 160 | 6.83e-11 | 62.8 |
MS.gene008499.t1 | MTR_7g074790 | 28.916 | 166 | 97 | 2 | 77 | 242 | 12 | 156 | 7.17e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008499.t1 | AT4G38180 | 28.409 | 264 | 186 | 2 | 276 | 537 | 412 | 674 | 5.49e-31 | 130 |
MS.gene008499.t1 | AT4G38180 | 32.472 | 271 | 163 | 7 | 12 | 275 | 16 | 273 | 5.10e-23 | 105 |
MS.gene008499.t1 | AT4G15090 | 25.000 | 264 | 185 | 5 | 276 | 535 | 388 | 642 | 4.38e-24 | 108 |
MS.gene008499.t1 | AT4G15090 | 24.206 | 252 | 177 | 7 | 32 | 274 | 2 | 248 | 6.56e-12 | 69.7 |
MS.gene008499.t1 | AT4G15090 | 25.000 | 264 | 185 | 5 | 276 | 535 | 388 | 642 | 4.38e-24 | 108 |
MS.gene008499.t1 | AT4G15090 | 24.206 | 252 | 177 | 7 | 32 | 274 | 2 | 248 | 6.56e-12 | 69.7 |
MS.gene008499.t1 | AT4G15090 | 25.000 | 264 | 185 | 5 | 276 | 535 | 388 | 642 | 4.38e-24 | 108 |
MS.gene008499.t1 | AT4G15090 | 24.206 | 252 | 177 | 7 | 32 | 274 | 2 | 248 | 6.56e-12 | 69.7 |
MS.gene008499.t1 | AT4G15090 | 25.000 | 264 | 185 | 5 | 276 | 535 | 388 | 642 | 4.38e-24 | 108 |
MS.gene008499.t1 | AT4G15090 | 24.206 | 252 | 177 | 7 | 32 | 274 | 2 | 248 | 6.56e-12 | 69.7 |
MS.gene008499.t1 | AT4G15090 | 25.000 | 264 | 185 | 5 | 276 | 535 | 388 | 642 | 4.38e-24 | 108 |
MS.gene008499.t1 | AT4G15090 | 24.206 | 252 | 177 | 7 | 32 | 274 | 2 | 248 | 6.56e-12 | 69.7 |
MS.gene008499.t1 | AT3G06250 | 28.214 | 280 | 185 | 6 | 276 | 548 | 485 | 755 | 1.54e-23 | 107 |
MS.gene008499.t1 | AT3G06250 | 28.214 | 280 | 185 | 6 | 276 | 548 | 485 | 755 | 1.54e-23 | 107 |
MS.gene008499.t1 | AT3G06250 | 28.214 | 280 | 185 | 6 | 276 | 548 | 485 | 755 | 1.54e-23 | 107 |
MS.gene008499.t1 | AT4G38170 | 26.047 | 215 | 158 | 1 | 285 | 499 | 186 | 399 | 1.64e-23 | 105 |
MS.gene008499.t1 | AT3G22170 | 26.792 | 265 | 180 | 5 | 276 | 536 | 397 | 651 | 8.82e-23 | 104 |
MS.gene008499.t1 | AT3G22170 | 26.792 | 265 | 180 | 5 | 276 | 536 | 397 | 651 | 8.82e-23 | 104 |
MS.gene008499.t1 | AT5G18960 | 27.465 | 284 | 182 | 7 | 276 | 548 | 509 | 779 | 1.89e-22 | 103 |
MS.gene008499.t1 | AT5G18960 | 27.465 | 284 | 182 | 7 | 276 | 548 | 509 | 779 | 1.89e-22 | 103 |
MS.gene008499.t1 | AT2G27110 | 28.216 | 241 | 150 | 7 | 273 | 501 | 352 | 581 | 1.86e-21 | 100 |
MS.gene008499.t1 | AT2G27110 | 28.216 | 241 | 150 | 7 | 273 | 501 | 352 | 581 | 1.86e-21 | 100 |
MS.gene008499.t1 | AT1G76320 | 25.974 | 308 | 205 | 6 | 278 | 574 | 327 | 622 | 2.01e-21 | 100 |
MS.gene008499.t1 | AT1G76320 | 25.974 | 308 | 205 | 6 | 278 | 574 | 327 | 622 | 2.01e-21 | 100 |
MS.gene008499.t1 | AT2G27110 | 28.216 | 241 | 150 | 7 | 273 | 501 | 207 | 436 | 2.16e-21 | 99.8 |
MS.gene008499.t1 | AT1G76320 | 25.974 | 308 | 205 | 6 | 278 | 574 | 327 | 622 | 2.22e-21 | 99.8 |
MS.gene008499.t1 | AT1G76320 | 25.974 | 308 | 205 | 6 | 278 | 574 | 327 | 622 | 2.44e-21 | 99.8 |
MS.gene008499.t1 | AT4G19990 | 26.087 | 230 | 162 | 4 | 274 | 499 | 334 | 559 | 3.05e-20 | 96.3 |
MS.gene008499.t1 | AT4G19990 | 26.087 | 230 | 162 | 4 | 274 | 499 | 334 | 559 | 3.05e-20 | 96.3 |
MS.gene008499.t1 | AT4G19990 | 26.087 | 230 | 162 | 4 | 274 | 499 | 277 | 502 | 3.61e-20 | 95.9 |
MS.gene008499.t1 | AT4G19990 | 26.087 | 230 | 162 | 4 | 274 | 499 | 334 | 559 | 4.55e-20 | 95.9 |
MS.gene008499.t1 | AT4G19990 | 26.087 | 230 | 162 | 4 | 274 | 499 | 334 | 559 | 4.80e-20 | 95.9 |
MS.gene008499.t1 | AT4G19990 | 26.087 | 230 | 162 | 4 | 274 | 499 | 334 | 559 | 4.80e-20 | 95.9 |
MS.gene008499.t1 | AT4G19990 | 26.087 | 230 | 162 | 4 | 274 | 499 | 348 | 573 | 5.25e-20 | 95.5 |
MS.gene008499.t1 | AT2G32250 | 24.843 | 318 | 217 | 7 | 240 | 548 | 287 | 591 | 1.51e-19 | 94.4 |
MS.gene008499.t1 | AT2G32250 | 24.843 | 318 | 217 | 7 | 240 | 548 | 287 | 591 | 1.51e-19 | 94.4 |
MS.gene008499.t1 | AT2G32250 | 24.843 | 318 | 217 | 7 | 240 | 548 | 287 | 591 | 1.51e-19 | 94.4 |
MS.gene008499.t1 | AT2G32250 | 24.843 | 318 | 217 | 7 | 240 | 548 | 287 | 591 | 1.67e-19 | 94.0 |
MS.gene008499.t1 | AT2G32250 | 24.843 | 318 | 217 | 7 | 240 | 548 | 287 | 591 | 1.67e-19 | 94.0 |
MS.gene008499.t1 | AT2G32250 | 24.843 | 318 | 217 | 7 | 240 | 548 | 246 | 550 | 1.76e-19 | 94.0 |
MS.gene008499.t1 | AT2G32250 | 24.843 | 318 | 217 | 7 | 240 | 548 | 246 | 550 | 1.92e-19 | 94.0 |
MS.gene008499.t1 | AT2G32250 | 24.843 | 318 | 217 | 7 | 240 | 548 | 287 | 591 | 2.64e-19 | 93.2 |
MS.gene008499.t1 | AT1G52520 | 26.000 | 250 | 171 | 5 | 275 | 513 | 407 | 653 | 8.98e-18 | 88.2 |
MS.gene008499.t1 | AT1G80010 | 25.896 | 251 | 165 | 6 | 275 | 512 | 432 | 674 | 9.91e-17 | 85.1 |
MS.gene008499.t1 | AT1G10240 | 30.918 | 207 | 125 | 7 | 47 | 239 | 14 | 216 | 3.20e-15 | 80.1 |
MS.gene008499.t1 | AT1G10240 | 25.000 | 268 | 154 | 8 | 273 | 518 | 384 | 626 | 3.51e-14 | 76.6 |
MS.gene008499.t1 | AT1G10240 | 30.918 | 207 | 125 | 7 | 47 | 239 | 14 | 216 | 3.20e-15 | 80.1 |
MS.gene008499.t1 | AT1G10240 | 25.000 | 268 | 154 | 8 | 273 | 518 | 384 | 626 | 3.51e-14 | 76.6 |
MS.gene008499.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 8.32e-14 | 75.5 |
MS.gene008499.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 8.67e-14 | 75.5 |
MS.gene008499.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 1.02e-13 | 75.5 |
MS.gene008499.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 1.02e-13 | 75.5 |
MS.gene008499.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 1.05e-13 | 75.1 |
Find 111 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAATTCTTAAACTTGAATT+TGG | 0.181995 | 3.3:-55389905 | MS.gene008499:CDS |
ACCACCATGAAGTCCATAAT+TGG | 0.210507 | 3.3:+55387465 | None:intergenic |
CAAGCAATTTACCCCAATTA+TGG | 0.222640 | 3.3:-55387478 | MS.gene008499:CDS |
GTTGCGTTCTTCTTCTTCTT+TGG | 0.224742 | 3.3:+55387985 | None:intergenic |
TATTTACGTGATAAGTTCTT+TGG | 0.228072 | 3.3:-55388765 | MS.gene008499:CDS |
GTCATGAATGTTGCTGGTTT+TGG | 0.255328 | 3.3:-55387406 | MS.gene008499:CDS |
CGGAGCAATTTGAGGAGTTT+TGG | 0.270030 | 3.3:-55388872 | MS.gene008499:CDS |
AATCAAAACCTGTCATATAA+TGG | 0.273083 | 3.3:-55389504 | MS.gene008499:CDS |
AGAAGTTAAAGATGAAATTA+TGG | 0.274889 | 3.3:-55388508 | MS.gene008499:CDS |
CTGTCATATAATGGGATATA+TGG | 0.287437 | 3.3:-55389495 | MS.gene008499:CDS |
AACTTCCTGTGTTGGGCTCT+TGG | 0.288676 | 3.3:-55387434 | MS.gene008499:CDS |
CTTGTGCTAGCATTGCCATT+AGG | 0.324197 | 3.3:+55387628 | None:intergenic |
GCCTTGCTTCGCAATTTGTT+CGG | 0.326898 | 3.3:+55389690 | None:intergenic |
TACCCCAATTATGGACTTCA+TGG | 0.332590 | 3.3:-55387469 | MS.gene008499:CDS |
CCTTGCTTCGCAATTTGTTC+GGG | 0.333508 | 3.3:+55389691 | None:intergenic |
GGTTGAACTGCATTTGTAAC+TGG | 0.364984 | 3.3:+55387544 | None:intergenic |
ATGATTGAACTTGCTCGATT+TGG | 0.365589 | 3.3:-55388186 | MS.gene008499:CDS |
CCATTAGGAAAGGTGATGTT+AGG | 0.366141 | 3.3:-55389826 | MS.gene008499:CDS |
ATCAAAACCTGTCATATAAT+GGG | 0.369316 | 3.3:-55389503 | MS.gene008499:CDS |
TGATCACATACCAGAATGTT+TGG | 0.370163 | 3.3:-55388283 | MS.gene008499:CDS |
TACTCAGTCTAAAAGTTATC+AGG | 0.373452 | 3.3:-55388043 | MS.gene008499:CDS |
ATTTACGTGGGGTTACTTCA+TGG | 0.380615 | 3.3:+55389603 | None:intergenic |
TCAGCTGTCTCCGGAATCTC+TGG | 0.384192 | 3.3:+55387571 | None:intergenic |
ACTTCAATATAATGAAGAAT+TGG | 0.390431 | 3.3:-55387786 | MS.gene008499:CDS |
GTAAAATTTCTGAAGCAGAT+AGG | 0.391444 | 3.3:-55389556 | MS.gene008499:CDS |
GATCTCTGCTGTGTAAATTC+TGG | 0.392583 | 3.3:+55388536 | None:intergenic |
CCTAACATCACCTTTCCTAA+TGG | 0.392597 | 3.3:+55389826 | None:intergenic |
GCACAAGTCATGAATGTTGC+TGG | 0.402938 | 3.3:-55387412 | MS.gene008499:CDS |
TCATACCGCAAGGCATTGTT+TGG | 0.406615 | 3.3:-55387923 | MS.gene008499:intron |
CCACCATGAAGTCCATAATT+GGG | 0.409599 | 3.3:+55387466 | None:intergenic |
CAGTTTGTGTGCAACAAGAA+TGG | 0.415144 | 3.3:-55389773 | MS.gene008499:CDS |
GAGACAAGAAGCACTTATCT+AGG | 0.423504 | 3.3:-55389745 | MS.gene008499:CDS |
AATCATCAACTTCCTGTGTT+GGG | 0.424191 | 3.3:-55387441 | MS.gene008499:CDS |
CGTGTCATAACCAAACATTC+TGG | 0.425974 | 3.3:+55388273 | None:intergenic |
GGAACACCACAAAGACTGTT+TGG | 0.430519 | 3.3:-55390125 | MS.gene008499:CDS |
TTCTGAACAGCGATTCCAAT+GGG | 0.432579 | 3.3:-55388224 | MS.gene008499:CDS |
TGACTTTAAATCAAAATTCA+CGG | 0.435713 | 3.3:-55388604 | MS.gene008499:CDS |
GTATTCTTCTTCACTGGAAT+CGG | 0.437019 | 3.3:+55390099 | None:intergenic |
ATCTGTGTATTCTTCTTCAC+TGG | 0.444466 | 3.3:+55390093 | None:intergenic |
TAAATTGCTTGCATTTCCAT+TGG | 0.446330 | 3.3:+55387490 | None:intergenic |
GATACCATGGTTTATACATT+GGG | 0.461449 | 3.3:-55388444 | MS.gene008499:CDS |
TGAACTTGAAGGAAATGCTT+GGG | 0.462518 | 3.3:-55388829 | MS.gene008499:CDS |
GAATCATCAACTTCCTGTGT+TGG | 0.463071 | 3.3:-55387442 | MS.gene008499:CDS |
ATTCAGAAGAATGAACTTGA+AGG | 0.466546 | 3.3:-55388840 | MS.gene008499:CDS |
ATTAGCATCTATTTCCCCAT+TGG | 0.467480 | 3.3:+55388209 | None:intergenic |
AGCACTTATCTAGGAATGAT+AGG | 0.468246 | 3.3:-55389736 | MS.gene008499:CDS |
AGTTTGTGTGCAACAAGAAT+GGG | 0.470588 | 3.3:-55389772 | MS.gene008499:CDS |
TAAAATTTCTGAAGCAGATA+GGG | 0.473779 | 3.3:-55389555 | MS.gene008499:CDS |
AAGAATTTCATCAGAGGCAA+TGG | 0.477228 | 3.3:+55389919 | None:intergenic |
ATGAACTTGAAGGAAATGCT+TGG | 0.479360 | 3.3:-55388830 | MS.gene008499:CDS |
GGGATATATGGTTGCTCAGA+AGG | 0.480775 | 3.3:-55389483 | MS.gene008499:CDS |
CATATATCCCATTATATGAC+AGG | 0.494595 | 3.3:+55389496 | None:intergenic |
CCTTTGCTCTTCACAGTGAC+CGG | 0.495645 | 3.3:+55388012 | None:intergenic |
CCAGGCTGCAACACATTCAC+AGG | 0.495765 | 3.3:+55387520 | None:intergenic |
GGATACCATGGTTTATACAT+TGG | 0.504775 | 3.3:-55388445 | MS.gene008499:CDS |
AAGTTATCAGGTAGGTGATC+CGG | 0.508654 | 3.3:-55388031 | MS.gene008499:CDS |
ACTGGCAAATCAGCTGTCTC+CGG | 0.514020 | 3.3:+55387562 | None:intergenic |
TTGGGAAAATATCGTGAGAA+AGG | 0.514905 | 3.3:-55388426 | MS.gene008499:CDS |
GATGCTGAAGATGATGTTGA+TGG | 0.520081 | 3.3:-55390034 | MS.gene008499:CDS |
CGTTGGACAAAGAACGCAAA+AGG | 0.525733 | 3.3:-55388252 | MS.gene008499:CDS |
CGGAGTCCAAACAGTCTTTG+TGG | 0.529107 | 3.3:+55390119 | None:intergenic |
TATCGTTATGGAAAATGCAA+AGG | 0.529410 | 3.3:-55389854 | MS.gene008499:CDS |
CCTGTGAATGTGTTGCAGCC+TGG | 0.530139 | 3.3:-55387520 | MS.gene008499:CDS |
CAAGCAAAAGAAATGTAAAG+AGG | 0.532177 | 3.3:-55387605 | MS.gene008499:CDS |
CAAAACTCCTCAAATTGCTC+CGG | 0.533339 | 3.3:+55388873 | None:intergenic |
GCGATGCATTAGCAAGTGAC+AGG | 0.533703 | 3.3:-55389958 | MS.gene008499:CDS |
ATTTCCATTGGAAATTTACC+AGG | 0.533950 | 3.3:+55387502 | None:intergenic |
CTTGATGCTCTTCAATCACA+TGG | 0.535182 | 3.3:-55389527 | MS.gene008499:CDS |
TGATTGAAGAGCATCAAGTT+GGG | 0.536427 | 3.3:+55389532 | None:intergenic |
AAGGGTGGATATACTGATGT+AGG | 0.538008 | 3.3:-55389464 | MS.gene008499:CDS |
GTGATTGAAGAGCATCAAGT+TGG | 0.540889 | 3.3:+55389531 | None:intergenic |
AAAGATGAAATTATGGATGC+TGG | 0.553017 | 3.3:-55388501 | MS.gene008499:CDS |
CCCGAACAAATTGCGAAGCA+AGG | 0.553648 | 3.3:-55389691 | MS.gene008499:CDS |
GATGTTAGGCGCAATAGTAG+TGG | 0.581865 | 3.3:-55389812 | MS.gene008499:CDS |
AAGACATATTCTAGAGCCAA+AGG | 0.582373 | 3.3:-55388696 | MS.gene008499:CDS |
AGCATATAACATTGGATCGG+TGG | 0.585153 | 3.3:+55389337 | None:intergenic |
GGATATATGGTTGCTCAGAA+GGG | 0.589834 | 3.3:-55389482 | MS.gene008499:CDS |
GATAGCTTCACATTGAGATG+TGG | 0.595390 | 3.3:+55388731 | None:intergenic |
GCAGCCTGGTAAATTTCCAA+TGG | 0.596006 | 3.3:-55387506 | MS.gene008499:CDS |
TTTCTGAACAGCGATTCCAA+TGG | 0.598192 | 3.3:-55388225 | MS.gene008499:CDS |
GCAAGTGTGTAAATTTACGT+GGG | 0.600179 | 3.3:+55389591 | None:intergenic |
TGATGAATCAGTTCAACAAG+AGG | 0.603374 | 3.3:-55389990 | MS.gene008499:CDS |
CCGGTCACTGTGAAGAGCAA+AGG | 0.613504 | 3.3:-55388012 | MS.gene008499:CDS |
TATATGGTTGCTCAGAAGGG+TGG | 0.613989 | 3.3:-55389479 | MS.gene008499:CDS |
TTCAGCATATAACATTGGAT+CGG | 0.614583 | 3.3:+55389334 | None:intergenic |
TGCTGGTGCAATACGTCTCG+AGG | 0.619998 | 3.3:-55388484 | MS.gene008499:CDS |
AAGTTTAAGAATTTCATCAG+AGG | 0.626746 | 3.3:+55389913 | None:intergenic |
CACCATGAAGTCCATAATTG+GGG | 0.627752 | 3.3:+55387467 | None:intergenic |
CCCAATTATGGACTTCATGG+TGG | 0.629190 | 3.3:-55387466 | MS.gene008499:CDS |
GTGCATTACAAAGCTAAACA+AGG | 0.632644 | 3.3:-55389662 | MS.gene008499:CDS |
TCGTATTCAGCATATAACAT+TGG | 0.632685 | 3.3:+55389329 | None:intergenic |
CAGTCTAAAAGTTATCAGGT+AGG | 0.641408 | 3.3:-55388039 | MS.gene008499:CDS |
TGCAAGTGTGTAAATTTACG+TGG | 0.643723 | 3.3:+55389590 | None:intergenic |
ATGCGCGATGTCATTAAAGA+CGG | 0.646118 | 3.3:-55389401 | MS.gene008499:CDS |
AAAGTACAAGTCATACCGCA+AGG | 0.649575 | 3.3:-55387933 | MS.gene008499:CDS |
GAACTTATCACGTAAATATG+CGG | 0.655600 | 3.3:+55388770 | None:intergenic |
TGTAGACTATTCGAGTCACG+TGG | 0.658455 | 3.3:-55388351 | MS.gene008499:CDS |
TTGTGCCAAGAGCCCAACAC+AGG | 0.660751 | 3.3:+55387429 | None:intergenic |
TGCATTACAAAGCTAAACAA+GGG | 0.661066 | 3.3:-55389661 | MS.gene008499:CDS |
AATGTTTGGTTATGACACGT+TGG | 0.662725 | 3.3:-55388269 | MS.gene008499:CDS |
ATATGCGAACAAGTCACTGT+GGG | 0.664385 | 3.3:-55388796 | MS.gene008499:CDS |
GATGAATCAGTTCAACAAGA+GGG | 0.669122 | 3.3:-55389989 | MS.gene008499:CDS |
CGCAGGTGAGTTGACAACAC+AGG | 0.673245 | 3.3:+55388579 | None:intergenic |
CATCACTCTCAATCAAACGC+AGG | 0.673784 | 3.3:+55388562 | None:intergenic |
GGCTGCAACACATTCACAGG+AGG | 0.677607 | 3.3:+55387523 | None:intergenic |
CAAGTGTGTAAATTTACGTG+GGG | 0.688606 | 3.3:+55389592 | None:intergenic |
GTAGTGGAATAATTACAATG+AGG | 0.704741 | 3.3:-55389796 | MS.gene008499:CDS |
TCTGAACAGCGATTCCAATG+GGG | 0.714485 | 3.3:-55388223 | MS.gene008499:CDS |
CATATGCGAACAAGTCACTG+TGG | 0.716941 | 3.3:-55388797 | MS.gene008499:CDS |
AATTACCAAACAATGCCTTG+CGG | 0.726793 | 3.3:+55387918 | None:intergenic |
GTAGACTATTCGAGTCACGT+GGG | 0.777031 | 3.3:-55388350 | MS.gene008499:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATTATAATTCTTAATTCA+TGG | + | chr3.3:55389622-55389641 | None:intergenic | 15.0% |
!!! | TATGAATTTTATTATCGTTA+TGG | - | chr3.3:55387618-55387637 | MS.gene008499:CDS | 15.0% |
!! | ACTTCAATATAATGAAGAAT+TGG | - | chr3.3:55389698-55389717 | MS.gene008499:CDS | 20.0% |
!! | AGAAGTTAAAGATGAAATTA+TGG | - | chr3.3:55388976-55388995 | MS.gene008499:intron | 20.0% |
!! | ATCTAATATTGTTGCATAAA+AGG | + | chr3.3:55389783-55389802 | None:intergenic | 20.0% |
!! | GAAATTCTTAAACTTGAATT+TGG | - | chr3.3:55387579-55387598 | MS.gene008499:CDS | 20.0% |
!! | TGACTTTAAATCAAAATTCA+CGG | - | chr3.3:55388880-55388899 | MS.gene008499:CDS | 20.0% |
!!! | AAAAAAGAATGGTGTTTTTA+GGG | - | chr3.3:55389363-55389382 | MS.gene008499:CDS | 20.0% |
!!! | AAATTCAAAAATTTTGCCTT+TGG | + | chr3.3:55388807-55388826 | None:intergenic | 20.0% |
!!! | AGCAATTTTTTTTTTTTTGC+AGG | - | chr3.3:55389659-55389678 | MS.gene008499:CDS | 20.0% |
!!! | ATTTATGCATAATTTTGAAC+AGG | - | chr3.3:55388823-55388842 | MS.gene008499:CDS | 20.0% |
!!! | TTTCCATACATTCTAAAAAA+CGG | + | chr3.3:55388409-55388428 | None:intergenic | 20.0% |
! | AAAAAGAAGAGAAAACCTAA+TGG | - | chr3.3:55389841-55389860 | MS.gene008499:CDS | 25.0% |
! | AAGTTTAAGAATTTCATCAG+AGG | + | chr3.3:55387574-55387593 | None:intergenic | 25.0% |
! | AATCAAAACCTGTCATATAA+TGG | - | chr3.3:55387980-55387999 | MS.gene008499:CDS | 25.0% |
! | ATCAAAACCTGTCATATAAT+GGG | - | chr3.3:55387981-55388000 | MS.gene008499:CDS | 25.0% |
! | TATAAAGAAAACACCATTTC+TGG | - | chr3.3:55388553-55388572 | MS.gene008499:CDS | 25.0% |
! | TATTTACGTGATAAGTTCTT+TGG | - | chr3.3:55388719-55388738 | MS.gene008499:CDS | 25.0% |
!! | AAGAATGAAAAGACTGTTTT+GGG | - | chr3.3:55388193-55388212 | MS.gene008499:CDS | 25.0% |
!! | AATGTACTCAAATTTTACAC+CGG | - | chr3.3:55388592-55388611 | MS.gene008499:CDS | 25.0% |
!! | ACAAATATACCTTCTCTTTT+TGG | + | chr3.3:55389752-55389771 | None:intergenic | 25.0% |
!! | CAAAAAAGAATGGTGTTTTT+AGG | - | chr3.3:55389362-55389381 | MS.gene008499:CDS | 25.0% |
!!! | AAAAACACCATTCTTTTTTG+AGG | + | chr3.3:55389362-55389381 | None:intergenic | 25.0% |
!!! | AGGTCTGATTATTTTTGTTT+TGG | - | chr3.3:55388230-55388249 | MS.gene008499:CDS | 25.0% |
!!! | TAAAATTTCTGAAGCAGATA+GGG | - | chr3.3:55387929-55387948 | MS.gene008499:CDS | 25.0% |
AAACAATCGAGTCATATAAG+TGG | - | chr3.3:55388375-55388394 | MS.gene008499:CDS | 30.0% | |
AAAGAAGCCTCAAAAAAGAA+TGG | - | chr3.3:55389352-55389371 | MS.gene008499:CDS | 30.0% | |
AAAGATGAAATTATGGATGC+TGG | - | chr3.3:55388983-55389002 | MS.gene008499:intron | 30.0% | |
AACAAAAATTCCAGAGATTC+CGG | - | chr3.3:55389903-55389922 | MS.gene008499:CDS | 30.0% | |
AACAATCGAGTCATATAAGT+GGG | - | chr3.3:55388376-55388395 | MS.gene008499:CDS | 30.0% | |
ATTCAGAAGAATGAACTTGA+AGG | - | chr3.3:55388644-55388663 | MS.gene008499:CDS | 30.0% | |
ATTTCCATTGGAAATTTACC+AGG | + | chr3.3:55389985-55390004 | None:intergenic | 30.0% | |
CAAATATAATGGTCTGTGAA+TGG | + | chr3.3:55388334-55388353 | None:intergenic | 30.0% | |
CAAGCAAAAGAAATGTAAAG+AGG | - | chr3.3:55389879-55389898 | MS.gene008499:CDS | 30.0% | |
CATATATCCCATTATATGAC+AGG | + | chr3.3:55387991-55388010 | None:intergenic | 30.0% | |
CATTCACAGACCATTATATT+TGG | - | chr3.3:55388332-55388351 | MS.gene008499:CDS | 30.0% | |
GAACTTATCACGTAAATATG+CGG | + | chr3.3:55388717-55388736 | None:intergenic | 30.0% | |
GATACCATGGTTTATACATT+GGG | - | chr3.3:55389040-55389059 | MS.gene008499:intron | 30.0% | |
TAAATTGCTTGCATTTCCAT+TGG | + | chr3.3:55389997-55390016 | None:intergenic | 30.0% | |
TACTCAGTCTAAAAGTTATC+AGG | - | chr3.3:55389441-55389460 | MS.gene008499:CDS | 30.0% | |
TATCGTTATGGAAAATGCAA+AGG | - | chr3.3:55387630-55387649 | MS.gene008499:CDS | 30.0% | |
TCGTATTCAGCATATAACAT+TGG | + | chr3.3:55388158-55388177 | None:intergenic | 30.0% | |
TGCATTACAAAGCTAAACAA+GGG | - | chr3.3:55387823-55387842 | MS.gene008499:intron | 30.0% | |
TTCAGCATATAACATTGGAT+CGG | + | chr3.3:55388153-55388172 | None:intergenic | 30.0% | |
TTCTTTAAGCCAAAAAGAGA+AGG | - | chr3.3:55389740-55389759 | MS.gene008499:CDS | 30.0% | |
! | AAAGGTTTTTCCATTAGGAA+AGG | - | chr3.3:55387648-55387667 | MS.gene008499:intron | 30.0% |
! | AATGCAAAGGTTTTTCCATT+AGG | - | chr3.3:55387643-55387662 | MS.gene008499:CDS | 30.0% |
! | ATCCGTTGTGTATATTTTCT+GGG | - | chr3.3:55388300-55388319 | MS.gene008499:CDS | 30.0% |
! | CAGAAATTTTACGATACAGT+GGG | + | chr3.3:55387920-55387939 | None:intergenic | 30.0% |
! | CTGTCATATAATGGGATATA+TGG | - | chr3.3:55387989-55388008 | MS.gene008499:CDS | 30.0% |
! | GAAGAATGAAAAGACTGTTT+TGG | - | chr3.3:55388192-55388211 | MS.gene008499:CDS | 30.0% |
! | GTAGTGGAATAATTACAATG+AGG | - | chr3.3:55387688-55387707 | MS.gene008499:intron | 30.0% |
! | TATCCGTTGTGTATATTTTC+TGG | - | chr3.3:55388299-55388318 | MS.gene008499:CDS | 30.0% |
! | TCAGAAATTTTACGATACAG+TGG | + | chr3.3:55387921-55387940 | None:intergenic | 30.0% |
! | TTTTCCCAATGTATAAACCA+TGG | + | chr3.3:55389047-55389066 | None:intergenic | 30.0% |
!! | GTAAAATTTCTGAAGCAGAT+AGG | - | chr3.3:55387928-55387947 | MS.gene008499:CDS | 30.0% |
!!! | AATTTTGAACAGGTTTTGAG+AGG | - | chr3.3:55388833-55388852 | MS.gene008499:CDS | 30.0% |
!!! | GAACCGTTTTTTAGAATGTA+TGG | - | chr3.3:55388403-55388422 | MS.gene008499:CDS | 30.0% |
!!! | TCATGTCTTTTTTGTGATGA+AGG | - | chr3.3:55389168-55389187 | MS.gene008499:intron | 30.0% |
AAGAATTTCATCAGAGGCAA+TGG | + | chr3.3:55387568-55387587 | None:intergenic | 35.0% | |
AATCATCAACTTCCTGTGTT+GGG | - | chr3.3:55390043-55390062 | MS.gene008499:CDS | 35.0% | |
AATGAGGGAAGCTATTAAAC+AGG | - | chr3.3:55388469-55388488 | MS.gene008499:CDS | 35.0% | |
AATGTTTGGTTATGACACGT+TGG | - | chr3.3:55389215-55389234 | MS.gene008499:intron | 35.0% | |
AATTACCAAACAATGCCTTG+CGG | + | chr3.3:55389569-55389588 | None:intergenic | 35.0% | |
ACAAAAAAGACATGACAGCA+TGG | + | chr3.3:55389163-55389182 | None:intergenic | 35.0% | |
AGCACTTATCTAGGAATGAT+AGG | - | chr3.3:55387748-55387767 | MS.gene008499:CDS | 35.0% | |
AGTTTGTGTGCAACAAGAAT+GGG | - | chr3.3:55387712-55387731 | MS.gene008499:intron | 35.0% | |
ATATAATGGTCTGTGAATGG+TGG | + | chr3.3:55388331-55388350 | None:intergenic | 35.0% | |
ATCTGTGTATTCTTCTTCAC+TGG | + | chr3.3:55387394-55387413 | None:intergenic | 35.0% | |
ATGAACTTGAAGGAAATGCT+TGG | - | chr3.3:55388654-55388673 | MS.gene008499:CDS | 35.0% | |
ATTAGCATCTATTTCCCCAT+TGG | + | chr3.3:55389278-55389297 | None:intergenic | 35.0% | |
CAACGCAACACCAAATATAA+TGG | + | chr3.3:55388345-55388364 | None:intergenic | 35.0% | |
CAAGCAATTTACCCCAATTA+TGG | - | chr3.3:55390006-55390025 | MS.gene008499:CDS | 35.0% | |
CAAGTGTGTAAATTTACGTG+GGG | + | chr3.3:55387895-55387914 | None:intergenic | 35.0% | |
CACCCAGAAAATATACACAA+CGG | + | chr3.3:55388305-55388324 | None:intergenic | 35.0% | |
CAGTCTAAAAGTTATCAGGT+AGG | - | chr3.3:55389445-55389464 | MS.gene008499:CDS | 35.0% | |
GAATACGATGTCAACAATGA+TGG | - | chr3.3:55388170-55388189 | MS.gene008499:CDS | 35.0% | |
GATGAATCAGTTCAACAAGA+GGG | - | chr3.3:55387495-55387514 | MS.gene008499:CDS | 35.0% | |
GCAAGTGTGTAAATTTACGT+GGG | + | chr3.3:55387896-55387915 | None:intergenic | 35.0% | |
GGATACCATGGTTTATACAT+TGG | - | chr3.3:55389039-55389058 | MS.gene008499:intron | 35.0% | |
GTATTCTTCTTCACTGGAAT+CGG | + | chr3.3:55387388-55387407 | None:intergenic | 35.0% | |
GTGCATTACAAAGCTAAACA+AGG | - | chr3.3:55387822-55387841 | MS.gene008499:intron | 35.0% | |
TGAACTTGAAGGAAATGCTT+GGG | - | chr3.3:55388655-55388674 | MS.gene008499:CDS | 35.0% | |
TGATCACATACCAGAATGTT+TGG | - | chr3.3:55389201-55389220 | MS.gene008499:intron | 35.0% | |
TGATGAATCAGTTCAACAAG+AGG | - | chr3.3:55387494-55387513 | MS.gene008499:CDS | 35.0% | |
TGCAAGTGTGTAAATTTACG+TGG | + | chr3.3:55387897-55387916 | None:intergenic | 35.0% | |
TTGGGAAAATATCGTGAGAA+AGG | - | chr3.3:55389058-55389077 | MS.gene008499:intron | 35.0% | |
! | AAAGAAAACACCATTTCTGG+AGG | - | chr3.3:55388556-55388575 | MS.gene008499:CDS | 35.0% |
! | AAGAAAACACCATTTCTGGA+GGG | - | chr3.3:55388557-55388576 | MS.gene008499:CDS | 35.0% |
! | ATGATTGAACTTGCTCGATT+TGG | - | chr3.3:55389298-55389317 | MS.gene008499:intron | 35.0% |
!! | AAGACATATTCTAGAGCCAA+AGG | - | chr3.3:55388788-55388807 | MS.gene008499:CDS | 35.0% |
!! | TATATTTGGTGTTGCGTTGT+TGG | - | chr3.3:55388346-55388365 | MS.gene008499:CDS | 35.0% |
!! | TGATTGAAGAGCATCAAGTT+GGG | + | chr3.3:55387955-55387974 | None:intergenic | 35.0% |
!!! | CTTTTTTGTGATGAAGGAAG+AGG | - | chr3.3:55389174-55389193 | MS.gene008499:intron | 35.0% |
!!! | GTAGTGTCTAGTTTTGTAGA+GGG | - | chr3.3:55387852-55387871 | MS.gene008499:intron | 35.0% |
!!! | TAGTGTCTAGTTTTGTAGAG+GGG | - | chr3.3:55387853-55387872 | MS.gene008499:intron | 35.0% |
!!! | TGGTGTTTTTAGGGACATAA+TGG | - | chr3.3:55389372-55389391 | MS.gene008499:CDS | 35.0% |
!!! | TGTAGTGTCTAGTTTTGTAG+AGG | - | chr3.3:55387851-55387870 | MS.gene008499:intron | 35.0% |
!!! | TTTTTGTTTTGGCGACGTTT+TGG | - | chr3.3:55388241-55388260 | MS.gene008499:CDS | 35.0% |
AAAGTACAAGTCATACCGCA+AGG | - | chr3.3:55389551-55389570 | MS.gene008499:CDS | 40.0% | |
AAGGGTGGATATACTGATGT+AGG | - | chr3.3:55388020-55388039 | MS.gene008499:CDS | 40.0% | |
AAGTAAGTTCCCAAAAGCAG+TGG | - | chr3.3:55388427-55388446 | MS.gene008499:CDS | 40.0% | |
AAGTTATCAGGTAGGTGATC+CGG | - | chr3.3:55389453-55389472 | MS.gene008499:CDS | 40.0% | |
ACCACCATGAAGTCCATAAT+TGG | + | chr3.3:55390022-55390041 | None:intergenic | 40.0% | |
AGATGGAGATGGATCAATGA+GGG | - | chr3.3:55388454-55388473 | MS.gene008499:CDS | 40.0% | |
AGCATATAACATTGGATCGG+TGG | + | chr3.3:55388150-55388169 | None:intergenic | 40.0% | |
ATAAGCGATGAGATGCATCA+GGG | + | chr3.3:55388499-55388518 | None:intergenic | 40.0% | |
ATATGCGAACAAGTCACTGT+GGG | - | chr3.3:55388688-55388707 | MS.gene008499:CDS | 40.0% | |
ATGCGCGATGTCATTAAAGA+CGG | - | chr3.3:55388083-55388102 | MS.gene008499:CDS | 40.0% | |
ATTTACGTGGGGTTACTTCA+TGG | + | chr3.3:55387884-55387903 | None:intergenic | 40.0% | |
CAAAACTCCTCAAATTGCTC+CGG | + | chr3.3:55388614-55388633 | None:intergenic | 40.0% | |
CACCATGAAGTCCATAATTG+GGG | + | chr3.3:55390020-55390039 | None:intergenic | 40.0% | |
CAGTTTGTGTGCAACAAGAA+TGG | - | chr3.3:55387711-55387730 | MS.gene008499:intron | 40.0% | |
CCACCATGAAGTCCATAATT+GGG | + | chr3.3:55390021-55390040 | None:intergenic | 40.0% | |
CCATTAGGAAAGGTGATGTT+AGG | - | chr3.3:55387658-55387677 | MS.gene008499:intron | 40.0% | |
CCTAACATCACCTTTCCTAA+TGG | + | chr3.3:55387661-55387680 | None:intergenic | 40.0% | |
CGTGTCATAACCAAACATTC+TGG | + | chr3.3:55389214-55389233 | None:intergenic | 40.0% | |
CTCGAGGACAAAAAATGTGT+GGG | - | chr3.3:55389016-55389035 | MS.gene008499:intron | 40.0% | |
CTTGATGCTCTTCAATCACA+TGG | - | chr3.3:55387957-55387976 | MS.gene008499:CDS | 40.0% | |
GAATCATCAACTTCCTGTGT+TGG | - | chr3.3:55390042-55390061 | MS.gene008499:CDS | 40.0% | |
GATAGCTTCACATTGAGATG+TGG | + | chr3.3:55388756-55388775 | None:intergenic | 40.0% | |
GATCTCTGCTGTGTAAATTC+TGG | + | chr3.3:55388951-55388970 | None:intergenic | 40.0% | |
GATGCTGAAGATGATGTTGA+TGG | - | chr3.3:55387450-55387469 | MS.gene008499:CDS | 40.0% | |
GGATATATGGTTGCTCAGAA+GGG | - | chr3.3:55388002-55388021 | MS.gene008499:CDS | 40.0% | |
GGTTGAACTGCATTTGTAAC+TGG | + | chr3.3:55389943-55389962 | None:intergenic | 40.0% | |
GTTGCGTTCTTCTTCTTCTT+TGG | + | chr3.3:55389502-55389521 | None:intergenic | 40.0% | |
TACCCCAATTATGGACTTCA+TGG | - | chr3.3:55390015-55390034 | MS.gene008499:CDS | 40.0% | |
TCGAGGACAAAAAATGTGTG+GGG | - | chr3.3:55389017-55389036 | MS.gene008499:intron | 40.0% | |
TCTCGAGGACAAAAAATGTG+TGG | - | chr3.3:55389015-55389034 | MS.gene008499:intron | 40.0% | |
TTCTGAACAGCGATTCCAAT+GGG | - | chr3.3:55389260-55389279 | MS.gene008499:intron | 40.0% | |
TTTCTAAACCCCTCCAGAAA+TGG | + | chr3.3:55388569-55388588 | None:intergenic | 40.0% | |
TTTCTGAACAGCGATTCCAA+TGG | - | chr3.3:55389259-55389278 | MS.gene008499:intron | 40.0% | |
! | AGAAAACACCATTTCTGGAG+GGG | - | chr3.3:55388558-55388577 | MS.gene008499:CDS | 40.0% |
! | TTTTACACCGGAGCAATTTG+AGG | - | chr3.3:55388604-55388623 | MS.gene008499:CDS | 40.0% |
!! | AAAAGACTGTTTTGGGCTGA+TGG | - | chr3.3:55388200-55388219 | MS.gene008499:CDS | 40.0% |
!! | AAAGACTGTTTTGGGCTGAT+GGG | - | chr3.3:55388201-55388220 | MS.gene008499:CDS | 40.0% |
!! | CATCTGTTACCACTGCTTTT+GGG | + | chr3.3:55388439-55388458 | None:intergenic | 40.0% |
!! | GAGACAAGAAGCACTTATCT+AGG | - | chr3.3:55387739-55387758 | MS.gene008499:intron | 40.0% |
!! | GTGATTGAAGAGCATCAAGT+TGG | + | chr3.3:55387956-55387975 | None:intergenic | 40.0% |
!!! | GTCATGAATGTTGCTGGTTT+TGG | - | chr3.3:55390078-55390097 | MS.gene008499:CDS | 40.0% |
AAAATGTGTGGGGGATACCA+TGG | - | chr3.3:55389027-55389046 | MS.gene008499:intron | 45.0% | |
CAGATGGAGATGGATCAATG+AGG | - | chr3.3:55388453-55388472 | MS.gene008499:CDS | 45.0% | |
CATAAGCGATGAGATGCATC+AGG | + | chr3.3:55388500-55388519 | None:intergenic | 45.0% | |
CATATGCGAACAAGTCACTG+TGG | - | chr3.3:55388687-55388706 | MS.gene008499:CDS | 45.0% | |
CATCACTCTCAATCAAACGC+AGG | + | chr3.3:55388925-55388944 | None:intergenic | 45.0% | |
CCAAAAGCAGTGGTAACAGA+TGG | - | chr3.3:55388437-55388456 | MS.gene008499:CDS | 45.0% | |
CCCAATTATGGACTTCATGG+TGG | - | chr3.3:55390018-55390037 | MS.gene008499:CDS | 45.0% | |
CGAGGACAAAAAATGTGTGG+GGG | - | chr3.3:55389018-55389037 | MS.gene008499:intron | 45.0% | |
CGCATTCTTGTGTAAATGCC+AGG | + | chr3.3:55388525-55388544 | None:intergenic | 45.0% | |
CGTTGGACAAAGAACGCAAA+AGG | - | chr3.3:55389232-55389251 | MS.gene008499:intron | 45.0% | |
CTTGTGCTAGCATTGCCATT+AGG | + | chr3.3:55389859-55389878 | None:intergenic | 45.0% | |
GATGTTAGGCGCAATAGTAG+TGG | - | chr3.3:55387672-55387691 | MS.gene008499:intron | 45.0% | |
GCACAAGTCATGAATGTTGC+TGG | - | chr3.3:55390072-55390091 | MS.gene008499:CDS | 45.0% | |
GCAGCCTGGTAAATTTCCAA+TGG | - | chr3.3:55389978-55389997 | MS.gene008499:CDS | 45.0% | |
GGAACACCACAAAGACTGTT+TGG | - | chr3.3:55387359-55387378 | MS.gene008499:CDS | 45.0% | |
GGGATATATGGTTGCTCAGA+AGG | - | chr3.3:55388001-55388020 | MS.gene008499:CDS | 45.0% | |
GTAGACTATTCGAGTCACGT+GGG | - | chr3.3:55389134-55389153 | MS.gene008499:intron | 45.0% | |
TATATGGTTGCTCAGAAGGG+TGG | - | chr3.3:55388005-55388024 | MS.gene008499:CDS | 45.0% | |
TCTGAACAGCGATTCCAATG+GGG | - | chr3.3:55389261-55389280 | MS.gene008499:intron | 45.0% | |
TGTAGACTATTCGAGTCACG+TGG | - | chr3.3:55389133-55389152 | MS.gene008499:intron | 45.0% | |
! | CCATCTGTTACCACTGCTTT+TGG | + | chr3.3:55388440-55388459 | None:intergenic | 45.0% |
! | CCTTGCTTCGCAATTTGTTC+GGG | + | chr3.3:55387796-55387815 | None:intergenic | 45.0% |
! | CGGAGCAATTTGAGGAGTTT+TGG | - | chr3.3:55388612-55388631 | MS.gene008499:CDS | 45.0% |
! | GCCTTGCTTCGCAATTTGTT+CGG | + | chr3.3:55387797-55387816 | None:intergenic | 45.0% |
!! | ATTTGGTGTTGCGTTGTTGG+AGG | - | chr3.3:55388349-55388368 | MS.gene008499:CDS | 45.0% |
!! | TCATACCGCAAGGCATTGTT+TGG | - | chr3.3:55389561-55389580 | MS.gene008499:CDS | 45.0% |
AACTTCCTGTGTTGGGCTCT+TGG | - | chr3.3:55390050-55390069 | MS.gene008499:CDS | 50.0% | |
ACTGGCAAATCAGCTGTCTC+CGG | + | chr3.3:55389925-55389944 | None:intergenic | 50.0% | |
CATCTCATCGCTTATGTGCC+TGG | - | chr3.3:55388504-55388523 | MS.gene008499:CDS | 50.0% | |
CCCGAACAAATTGCGAAGCA+AGG | - | chr3.3:55387793-55387812 | MS.gene008499:CDS | 50.0% | |
CCTTTGCTCTTCACAGTGAC+CGG | + | chr3.3:55389475-55389494 | None:intergenic | 50.0% | |
CGGAGTCCAAACAGTCTTTG+TGG | + | chr3.3:55387368-55387387 | None:intergenic | 50.0% | |
GCAGTGGTAACAGATGGAGA+TGG | - | chr3.3:55388443-55388462 | MS.gene008499:CDS | 50.0% | |
GCGATGCATTAGCAAGTGAC+AGG | - | chr3.3:55387526-55387545 | MS.gene008499:CDS | 50.0% | |
TTTGGGCTGATGGGAGTAGT+AGG | - | chr3.3:55388210-55388229 | MS.gene008499:CDS | 50.0% | |
CCAGGCTGCAACACATTCAC+AGG | + | chr3.3:55389967-55389986 | None:intergenic | 55.0% | |
CCGGTCACTGTGAAGAGCAA+AGG | - | chr3.3:55389472-55389491 | MS.gene008499:CDS | 55.0% | |
CCTGTGAATGTGTTGCAGCC+TGG | - | chr3.3:55389964-55389983 | MS.gene008499:CDS | 55.0% | |
GGCTGCAACACATTCACAGG+AGG | + | chr3.3:55389964-55389983 | None:intergenic | 55.0% | |
TCAGCTGTCTCCGGAATCTC+TGG | + | chr3.3:55389916-55389935 | None:intergenic | 55.0% | |
TGCTGGTGCAATACGTCTCG+AGG | - | chr3.3:55389000-55389019 | MS.gene008499:intron | 55.0% | |
TTGTGCCAAGAGCCCAACAC+AGG | + | chr3.3:55390058-55390077 | None:intergenic | 55.0% | |
! | CGCAGGTGAGTTGACAACAC+AGG | + | chr3.3:55388908-55388927 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 55387357 | 55390149 | 55387357 | ID=MS.gene008499 |
chr3.3 | mRNA | 55387357 | 55390149 | 55387357 | ID=MS.gene008499.t1;Parent=MS.gene008499 |
chr3.3 | exon | 55389328 | 55390149 | 55389328 | ID=MS.gene008499.t1.exon1;Parent=MS.gene008499.t1 |
chr3.3 | CDS | 55389328 | 55390149 | 55389328 | ID=cds.MS.gene008499.t1;Parent=MS.gene008499.t1 |
chr3.3 | exon | 55387924 | 55388928 | 55387924 | ID=MS.gene008499.t1.exon2;Parent=MS.gene008499.t1 |
chr3.3 | CDS | 55387924 | 55388928 | 55387924 | ID=cds.MS.gene008499.t1;Parent=MS.gene008499.t1 |
chr3.3 | exon | 55387745 | 55387825 | 55387745 | ID=MS.gene008499.t1.exon3;Parent=MS.gene008499.t1 |
chr3.3 | CDS | 55387745 | 55387825 | 55387745 | ID=cds.MS.gene008499.t1;Parent=MS.gene008499.t1 |
chr3.3 | exon | 55387357 | 55387665 | 55387357 | ID=MS.gene008499.t1.exon4;Parent=MS.gene008499.t1 |
chr3.3 | CDS | 55387357 | 55387665 | 55387357 | ID=cds.MS.gene008499.t1;Parent=MS.gene008499.t1 |
Gene Sequence |
Protein sequence |