Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008579.t1 | XP_003599289.1 | 83.6 | 183 | 30 | 0 | 1 | 183 | 1 | 183 | 3.80E-79 | 304.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008579.t1 | Q9FJK3 | 38.9 | 157 | 95 | 1 | 1 | 157 | 1 | 156 | 8.8e-24 | 111.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008579.t1 | G7J0M2 | 83.6 | 183 | 30 | 0 | 1 | 183 | 1 | 183 | 2.8e-79 | 304.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene008579.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008579.t1 | MTR_3g031240 | 83.607 | 183 | 30 | 0 | 1 | 183 | 1 | 183 | 2.32e-102 | 292 |
| MS.gene008579.t1 | MTR_3g031100 | 47.305 | 167 | 88 | 0 | 1 | 167 | 1 | 167 | 2.79e-50 | 162 |
| MS.gene008579.t1 | MTR_3g466980 | 49.032 | 155 | 78 | 1 | 1 | 155 | 1 | 154 | 3.00e-47 | 154 |
| MS.gene008579.t1 | MTR_4g063790 | 45.122 | 164 | 90 | 0 | 1 | 164 | 1 | 164 | 5.81e-45 | 146 |
| MS.gene008579.t1 | MTR_3g467080 | 44.375 | 160 | 89 | 0 | 1 | 160 | 1 | 160 | 4.00e-41 | 136 |
| MS.gene008579.t1 | MTR_2g016210 | 42.424 | 165 | 95 | 0 | 1 | 165 | 1 | 165 | 3.70e-40 | 136 |
| MS.gene008579.t1 | MTR_4g032620 | 37.805 | 164 | 102 | 0 | 1 | 164 | 1 | 164 | 1.35e-36 | 127 |
| MS.gene008579.t1 | MTR_3g065100 | 41.401 | 157 | 91 | 1 | 1 | 157 | 1 | 156 | 1.55e-36 | 127 |
| MS.gene008579.t1 | MTR_3g466830 | 41.975 | 162 | 87 | 3 | 3 | 161 | 2 | 159 | 5.96e-36 | 123 |
| MS.gene008579.t1 | MTR_8g036130 | 39.024 | 164 | 98 | 1 | 1 | 162 | 1 | 164 | 4.42e-32 | 115 |
| MS.gene008579.t1 | MTR_3g466890 | 40.127 | 157 | 91 | 2 | 3 | 158 | 2 | 156 | 1.92e-31 | 112 |
| MS.gene008579.t1 | MTR_3g465410 | 42.647 | 136 | 78 | 0 | 29 | 164 | 1 | 136 | 2.56e-31 | 110 |
| MS.gene008579.t1 | MTR_4g031910 | 39.241 | 158 | 96 | 0 | 1 | 158 | 1 | 158 | 1.17e-30 | 111 |
| MS.gene008579.t1 | MTR_5g075380 | 36.364 | 154 | 97 | 1 | 1 | 154 | 1 | 153 | 1.49e-30 | 109 |
| MS.gene008579.t1 | MTR_1g090710 | 41.615 | 161 | 87 | 4 | 1 | 158 | 1 | 157 | 2.13e-29 | 106 |
| MS.gene008579.t1 | MTR_2g035580 | 36.774 | 155 | 97 | 1 | 1 | 155 | 1 | 154 | 5.06e-26 | 97.8 |
| MS.gene008579.t1 | MTR_4g032290 | 36.420 | 162 | 103 | 0 | 1 | 162 | 1 | 162 | 1.45e-25 | 98.6 |
| MS.gene008579.t1 | MTR_5g047580 | 36.306 | 157 | 98 | 2 | 1 | 157 | 1 | 155 | 1.57e-25 | 96.7 |
| MS.gene008579.t1 | MTR_3g466900 | 41.085 | 129 | 73 | 2 | 31 | 158 | 1 | 127 | 1.63e-25 | 95.9 |
| MS.gene008579.t1 | MTR_2g035610 | 40.323 | 124 | 72 | 1 | 1 | 124 | 1 | 122 | 4.05e-25 | 94.4 |
| MS.gene008579.t1 | MTR_3g466930 | 40.310 | 129 | 74 | 2 | 31 | 158 | 1 | 127 | 4.11e-25 | 94.7 |
| MS.gene008579.t1 | MTR_1g077390 | 35.065 | 154 | 98 | 2 | 1 | 154 | 1 | 152 | 6.87e-25 | 94.7 |
| MS.gene008579.t1 | MTR_1g090783 | 38.365 | 159 | 90 | 5 | 3 | 158 | 2 | 155 | 2.33e-24 | 93.6 |
| MS.gene008579.t1 | MTR_1g090697 | 34.177 | 158 | 102 | 2 | 1 | 158 | 1 | 156 | 3.24e-24 | 93.2 |
| MS.gene008579.t1 | MTR_4g032260 | 34.194 | 155 | 102 | 0 | 1 | 155 | 1 | 155 | 5.28e-24 | 92.8 |
| MS.gene008579.t1 | MTR_1g077300 | 37.662 | 154 | 92 | 2 | 1 | 154 | 1 | 150 | 1.42e-22 | 89.0 |
| MS.gene008579.t1 | MTR_1g084950 | 36.943 | 157 | 97 | 2 | 1 | 157 | 1 | 155 | 3.15e-22 | 88.2 |
| MS.gene008579.t1 | MTR_1g077320 | 34.416 | 154 | 99 | 2 | 1 | 154 | 1 | 152 | 6.46e-21 | 84.7 |
| MS.gene008579.t1 | MTR_7g011950 | 34.416 | 154 | 99 | 2 | 1 | 154 | 1 | 152 | 1.01e-20 | 84.3 |
| MS.gene008579.t1 | MTR_4g028720 | 34.416 | 154 | 99 | 2 | 1 | 154 | 1 | 152 | 3.51e-19 | 80.1 |
| MS.gene008579.t1 | MTR_4g028800 | 43.836 | 73 | 39 | 1 | 1 | 73 | 1 | 71 | 2.28e-17 | 73.2 |
| MS.gene008579.t1 | MTR_7g106510 | 28.244 | 131 | 90 | 1 | 3 | 129 | 6 | 136 | 1.12e-15 | 74.3 |
| MS.gene008579.t1 | MTR_4g019670 | 29.915 | 117 | 82 | 0 | 3 | 119 | 6 | 122 | 6.23e-15 | 72.4 |
| MS.gene008579.t1 | MTR_6g018920 | 32.743 | 113 | 69 | 3 | 1 | 107 | 1 | 112 | 9.15e-15 | 71.2 |
| MS.gene008579.t1 | MTR_1g114730 | 31.897 | 116 | 72 | 3 | 1 | 110 | 1 | 115 | 4.87e-14 | 69.3 |
| MS.gene008579.t1 | MTR_6g005450 | 31.111 | 135 | 78 | 5 | 1 | 128 | 1 | 127 | 1.95e-13 | 67.4 |
| MS.gene008579.t1 | MTR_7g055800 | 30.702 | 114 | 51 | 2 | 1 | 114 | 1 | 86 | 1.99e-13 | 63.2 |
| MS.gene008579.t1 | MTR_4g107170 | 30.412 | 194 | 102 | 7 | 1 | 176 | 1 | 179 | 3.21e-13 | 66.2 |
| MS.gene008579.t1 | MTR_5g047560 | 33.058 | 121 | 64 | 2 | 1 | 121 | 1 | 104 | 4.30e-12 | 61.2 |
| MS.gene008579.t1 | MTR_3g093900 | 24.183 | 153 | 115 | 1 | 3 | 155 | 6 | 157 | 5.46e-12 | 63.5 |
| MS.gene008579.t1 | MTR_6g005440 | 28.571 | 126 | 83 | 3 | 1 | 120 | 1 | 125 | 2.10e-11 | 61.6 |
| MS.gene008579.t1 | MTR_7g055790 | 33.028 | 109 | 55 | 1 | 3 | 111 | 61 | 151 | 3.06e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008579.t1 | AT5G48670 | 38.854 | 157 | 95 | 1 | 1 | 157 | 1 | 156 | 1.45e-27 | 105 |
| MS.gene008579.t1 | AT3G05860 | 35.294 | 153 | 94 | 2 | 1 | 151 | 1 | 150 | 7.98e-26 | 98.6 |
| MS.gene008579.t1 | AT3G05860 | 35.065 | 154 | 95 | 2 | 1 | 152 | 1 | 151 | 2.22e-25 | 98.6 |
| MS.gene008579.t1 | AT3G05860 | 35.065 | 154 | 95 | 2 | 1 | 152 | 1 | 151 | 2.76e-25 | 98.6 |
| MS.gene008579.t1 | AT1G65330 | 31.707 | 164 | 109 | 2 | 3 | 165 | 2 | 163 | 4.46e-24 | 95.9 |
| MS.gene008579.t1 | AT1G65300 | 35.556 | 135 | 81 | 2 | 3 | 133 | 2 | 134 | 1.27e-23 | 94.7 |
| MS.gene008579.t1 | AT1G22590 | 32.919 | 161 | 104 | 1 | 1 | 161 | 1 | 157 | 2.33e-23 | 91.3 |
| MS.gene008579.t1 | AT5G26650 | 37.719 | 114 | 71 | 0 | 4 | 117 | 2 | 115 | 7.65e-23 | 94.0 |
| MS.gene008579.t1 | AT2G28700 | 32.903 | 155 | 97 | 2 | 1 | 152 | 1 | 151 | 1.28e-22 | 92.8 |
| MS.gene008579.t1 | AT5G27960 | 35.965 | 114 | 73 | 0 | 4 | 117 | 2 | 115 | 5.06e-22 | 90.9 |
| MS.gene008579.t1 | AT5G06500 | 32.639 | 144 | 80 | 3 | 1 | 142 | 1 | 129 | 3.55e-20 | 84.7 |
| MS.gene008579.t1 | AT5G27810 | 40.625 | 96 | 57 | 0 | 29 | 124 | 1 | 96 | 8.70e-20 | 80.9 |
| MS.gene008579.t1 | AT1G31630 | 33.913 | 115 | 75 | 1 | 3 | 117 | 2 | 115 | 2.43e-18 | 81.3 |
| MS.gene008579.t1 | AT5G26630 | 33.742 | 163 | 95 | 3 | 1 | 157 | 1 | 156 | 7.20e-18 | 78.2 |
| MS.gene008579.t1 | AT1G31640 | 33.043 | 115 | 76 | 1 | 3 | 117 | 2 | 115 | 1.08e-15 | 74.3 |
| MS.gene008579.t1 | AT2G40210 | 36.000 | 100 | 64 | 0 | 1 | 100 | 1 | 100 | 3.12e-15 | 72.8 |
| MS.gene008579.t1 | AT5G26580 | 31.624 | 117 | 66 | 2 | 1 | 117 | 1 | 103 | 7.46e-15 | 71.6 |
| MS.gene008579.t1 | AT1G77980 | 38.095 | 84 | 51 | 1 | 1 | 84 | 1 | 83 | 2.28e-11 | 61.6 |
| MS.gene008579.t1 | AT1G22130 | 39.759 | 83 | 49 | 1 | 1 | 83 | 1 | 82 | 2.71e-11 | 61.6 |
| MS.gene008579.t1 | AT5G13790 | 42.466 | 73 | 40 | 1 | 1 | 73 | 1 | 71 | 6.70e-11 | 60.1 |
| MS.gene008579.t1 | AT5G13790 | 42.466 | 73 | 40 | 1 | 1 | 73 | 1 | 71 | 7.61e-11 | 59.7 |
Find 28 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACCAAAAGTTGGATTTAA+TGG | 0.132212 | 3.3:-53822354 | MS.gene008579:CDS |
| ATCATCAAAATTAAATTCAT+TGG | 0.333942 | 3.3:+53822436 | None:intergenic |
| AATCCATTAAATCCAACTTT+TGG | 0.339004 | 3.3:+53822351 | None:intergenic |
| ATCAAGTCCGTAACTTCATT+AGG | 0.342103 | 3.3:+53822398 | None:intergenic |
| GAAGCTAGATAAAATTCATT+TGG | 0.361908 | 3.3:+53822281 | None:intergenic |
| GAGGTTTGGCCTTCTCCAAC+TGG | 0.364214 | 3.3:-53822638 | MS.gene008579:CDS |
| ACCATCATGAAGTTGAGGTT+TGG | 0.438425 | 3.3:-53822652 | MS.gene008579:CDS |
| AACGAATTGAGCATCCTTTG+TGG | 0.463741 | 3.3:-53822707 | MS.gene008579:CDS |
| CAATTGAATCCTCTTGAGCT+TGG | 0.465024 | 3.3:+53822327 | None:intergenic |
| GTCCGTAACTTCATTAGGAT+TGG | 0.474726 | 3.3:+53822403 | None:intergenic |
| CTTGATTAATGAGAAATTGA+AGG | 0.475026 | 3.3:-53822381 | MS.gene008579:CDS |
| GACCAATCCTAATGAAGTTA+CGG | 0.478007 | 3.3:-53822405 | MS.gene008579:CDS |
| GGAAAACAAGAAGAAAGAAA+TGG | 0.479640 | 3.3:-53822486 | MS.gene008579:CDS |
| GAAGGAAGTCTACCAAAAGT+TGG | 0.485133 | 3.3:-53822363 | MS.gene008579:CDS |
| TGAAAACCATCATGAAGTTG+AGG | 0.549600 | 3.3:-53822657 | MS.gene008579:CDS |
| GCCAAACCTCAACTTCATGA+TGG | 0.552073 | 3.3:+53822651 | None:intergenic |
| CACTACTATGGGCAGAAGGA+AGG | 0.561138 | 3.3:-53824788 | None:intergenic |
| AGATCAGTATCACAAACTAA+AGG | 0.570022 | 3.3:-53822510 | MS.gene008579:CDS |
| GAGTAGTAAGTGTGTTGTCA+AGG | 0.577943 | 3.3:-53822616 | MS.gene008579:CDS |
| TACTATGGGCAGAAGGAAGG+TGG | 0.588055 | 3.3:-53824785 | None:intergenic |
| CTTACTACTCCAGTTGGAGA+AGG | 0.592421 | 3.3:+53822629 | None:intergenic |
| TCAGTATCACAAACTAAAGG+TGG | 0.593746 | 3.3:-53822507 | MS.gene008579:CDS |
| AACACACTTACTACTCCAGT+TGG | 0.596457 | 3.3:+53822623 | None:intergenic |
| TCATCACTACTATGGGCAGA+AGG | 0.612227 | 3.3:-53824792 | None:intergenic |
| AATGGATTTCCAAGCTCAAG+AGG | 0.613698 | 3.3:-53822336 | MS.gene008579:CDS |
| TAGTCAACAACTCAAAGCGG+AGG | 0.677810 | 3.3:-53824750 | MS.gene008579:CDS |
| CACAAGCATTGATACCACAA+AGG | 0.692894 | 3.3:+53822693 | None:intergenic |
| ACATAGTCAACAACTCAAAG+CGG | 0.715101 | 3.3:-53824753 | MS.gene008579:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATAATTTTTTTTTATA+AGG | - | chr3.3:53824082-53824101 | MS.gene008579:intron | 0.0% |
| !! | CAATTATGTATAAAAATAAA+TGG | + | chr3.3:53822549-53822568 | None:intergenic | 10.0% |
| !! | TCTTATAAAAAAAAATCTTA+TGG | - | chr3.3:53824248-53824267 | MS.gene008579:intron | 10.0% |
| !!! | ATAAATAAGTCTTTTTTTTT+TGG | - | chr3.3:53823070-53823089 | MS.gene008579:intron | 10.0% |
| !!! | TAAATAAGTCTTTTTTTTTT+GGG | - | chr3.3:53823071-53823090 | MS.gene008579:intron | 10.0% |
| !!! | TCATTCTTTATTTTATAAAA+GGG | - | chr3.3:53823929-53823948 | MS.gene008579:intron | 10.0% |
| !!! | TTCATTCTTTATTTTATAAA+AGG | - | chr3.3:53823928-53823947 | MS.gene008579:intron | 10.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr3.3:53823557-53823576 | MS.gene008579:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr3.3:53823576-53823557 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr3.3:53823558-53823577 | MS.gene008579:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr3.3:53823577-53823558 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr3.3:53823366-53823385 | MS.gene008579:intron | 15.0% |
| !! | ATACTTTCTATTAAACAATT+AGG | + | chr3.3:53823983-53824002 | None:intergenic | 15.0% |
| !! | ATCATCAAAATTAAATTCAT+TGG | + | chr3.3:53824622-53824641 | None:intergenic | 15.0% |
| !! | ATTTATTCCTTCAAAAAAAA+AGG | + | chr3.3:53823633-53823652 | None:intergenic | 15.0% |
| !! | TACTTTCTATTAAACAATTA+GGG | + | chr3.3:53823982-53824001 | None:intergenic | 15.0% |
| !! | TTATCCTGTTAAAAAAAATA+AGG | + | chr3.3:53822824-53822843 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | + | chr3.3:53823235-53823254 | None:intergenic | 15.0% |
| !! | TTTATTCCTTCAAAAAAAAA+GGG | + | chr3.3:53823632-53823651 | None:intergenic | 15.0% |
| !!! | AACTTTTTTTTAAATTGTTG+AGG | + | chr3.3:53823841-53823860 | None:intergenic | 15.0% |
| !!! | AATTTTGCAATAATTTTTTG+CGG | - | chr3.3:53823401-53823420 | MS.gene008579:intron | 15.0% |
| !!! | TGATTATAATCTTTGATAAT+CGG | - | chr3.3:53822441-53822460 | MS.gene008579:CDS | 15.0% |
| !!! | TTATTTTATTCATAGATTTG+AGG | - | chr3.3:53823770-53823789 | MS.gene008579:intron | 15.0% |
| !!! | TTTTCCTTATTTTTTTTAAC+AGG | - | chr3.3:53822817-53822836 | MS.gene008579:intron | 15.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | - | chr3.3:53823496-53823515 | MS.gene008579:intron | 20.0% |
| !! | ACATCAAAATTGAATATTGT+TGG | - | chr3.3:53822921-53822940 | MS.gene008579:intron | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | - | chr3.3:53823495-53823514 | MS.gene008579:intron | 20.0% |
| !! | TACACAAAATCAAATATGAT+TGG | + | chr3.3:53823748-53823767 | None:intergenic | 20.0% |
| !! | TCCAAATCAAAATTTCAAAT+TGG | - | chr3.3:53822882-53822901 | MS.gene008579:intron | 20.0% |
| !!! | AATTAACCCTTTTTTTTTGA+AGG | - | chr3.3:53823623-53823642 | MS.gene008579:intron | 20.0% |
| !!! | ACCAATTTGAAATTTTGATT+TGG | + | chr3.3:53822886-53822905 | None:intergenic | 20.0% |
| !!! | ACCATTTTTATTACAGAATT+AGG | - | chr3.3:53822699-53822718 | MS.gene008579:CDS | 20.0% |
| !!! | CCATTTTTATTACAGAATTA+GGG | - | chr3.3:53822700-53822719 | MS.gene008579:CDS | 20.0% |
| !!! | GAATATTGTTGGATATTTTT+GGG | - | chr3.3:53822932-53822951 | MS.gene008579:intron | 20.0% |
| !!! | TGAATATTGTTGGATATTTT+TGG | - | chr3.3:53822931-53822950 | MS.gene008579:intron | 20.0% |
| !!! | TTTATAAAAGGGTAATTTGT+TGG | - | chr3.3:53823940-53823959 | MS.gene008579:intron | 20.0% |
| !!! | TTTTTTTATGTCATTTGTTC+TGG | + | chr3.3:53824108-53824127 | None:intergenic | 20.0% |
| !!! | TTTTTTTCATCTGTGAAAAA+TGG | + | chr3.3:53822755-53822774 | None:intergenic | 20.0% |
| !!! | TTTTTTTTAAATTGTTGAGG+TGG | + | chr3.3:53823838-53823857 | None:intergenic | 20.0% |
| ! | AAATCGTGTAAAATCGTTAA+TGG | - | chr3.3:53822772-53822791 | MS.gene008579:intron | 25.0% |
| ! | ACATTCATAGCAAGAAAAAA+TGG | - | chr3.3:53822331-53822350 | MS.gene008579:CDS | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | - | chr3.3:53823529-53823548 | MS.gene008579:intron | 25.0% |
| ! | ATAAAGAATGAAAATCGTCA+TGG | + | chr3.3:53823920-53823939 | None:intergenic | 25.0% |
| ! | CAAAGATTATAATCATAGTG+TGG | + | chr3.3:53822436-53822455 | None:intergenic | 25.0% |
| ! | CAAATGACATAAAAAAAGAG+TGG | - | chr3.3:53824111-53824130 | MS.gene008579:intron | 25.0% |
| ! | CCCTAATTCTGTAATAAAAA+TGG | + | chr3.3:53822703-53822722 | None:intergenic | 25.0% |
| ! | CTTGATTAATGAGAAATTGA+AGG | - | chr3.3:53824674-53824693 | MS.gene008579:intron | 25.0% |
| ! | GAAGCTAGATAAAATTCATT+TGG | + | chr3.3:53824777-53824796 | None:intergenic | 25.0% |
| ! | TAAACAATTAGGGTAAGTTA+CGG | + | chr3.3:53823972-53823991 | None:intergenic | 25.0% |
| ! | TTCAAATTGGTGCAAAAAAT+TGG | - | chr3.3:53822895-53822914 | MS.gene008579:intron | 25.0% |
| !! | AATCCATTAAATCCAACTTT+TGG | + | chr3.3:53824707-53824726 | None:intergenic | 25.0% |
| !! | GGATATCATTTTGTGAAAAT+CGG | + | chr3.3:53823727-53823746 | None:intergenic | 25.0% |
| !! | TACAAGGTCGATATTTTATA+TGG | - | chr3.3:53823589-53823608 | MS.gene008579:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | + | chr3.3:53823206-53823225 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | + | chr3.3:53823207-53823226 | None:intergenic | 25.0% |
| AGATCAGTATCACAAACTAA+AGG | - | chr3.3:53824545-53824564 | MS.gene008579:intron | 30.0% | |
| ATCTATCTTTATGAGTTAGG+CGG | - | chr3.3:53822479-53822498 | MS.gene008579:CDS | 30.0% | |
| ATCTGACAAAACATTAGAGT+TGG | + | chr3.3:53824156-53824175 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | - | chr3.3:53823269-53823288 | MS.gene008579:intron | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | - | chr3.3:53823528-53823547 | MS.gene008579:intron | 30.0% | |
| CTACCAAAAGTTGGATTTAA+TGG | - | chr3.3:53824701-53824720 | MS.gene008579:intron | 30.0% | |
| GGAAAACAAGAAGAAAGAAA+TGG | - | chr3.3:53824569-53824588 | MS.gene008579:intron | 30.0% | |
| TACAAGGTCGCTAATTTATA+GGG | + | chr3.3:53823114-53823133 | None:intergenic | 30.0% | |
| TCTGACAAAACATTAGAGTT+GGG | + | chr3.3:53824155-53824174 | None:intergenic | 30.0% | |
| TTACAAGGTCGCTAATTTAT+AGG | + | chr3.3:53823115-53823134 | None:intergenic | 30.0% | |
| !! | ATAAAAGGGTAATTTGTTGG+TGG | - | chr3.3:53823943-53823962 | MS.gene008579:intron | 30.0% |
| !!! | CCTTGTTCTTTTTTCATGTT+CGG | + | chr3.3:53824478-53824497 | None:intergenic | 30.0% |
| AAGTAGGGACTAAACTTACA+AGG | - | chr3.3:53823573-53823592 | MS.gene008579:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr3.3:53823592-53823573 | None:intergenic | 35.0% | |
| ACATAGTCAACAACTCAAAG+CGG | - | chr3.3:53822302-53822321 | MS.gene008579:CDS | 35.0% | |
| ACCCAATATTAATCGCATAC+CGG | + | chr3.3:53822512-53822531 | None:intergenic | 35.0% | |
| ACTCATAAAGATAGATGCCT+TGG | + | chr3.3:53822475-53822494 | None:intergenic | 35.0% | |
| AGTTGGGTACCAATATTGTT+GGG | + | chr3.3:53824139-53824158 | None:intergenic | 35.0% | |
| ATCAAGTCCGTAACTTCATT+AGG | + | chr3.3:53824660-53824679 | None:intergenic | 35.0% | |
| CCGAACATGAAAAAAGAACA+AGG | - | chr3.3:53824475-53824494 | MS.gene008579:intron | 35.0% | |
| CTCATAAAGATAGATGCCTT+GGG | + | chr3.3:53822474-53822493 | None:intergenic | 35.0% | |
| GACCAATCCTAATGAAGTTA+CGG | - | chr3.3:53824650-53824669 | MS.gene008579:intron | 35.0% | |
| GGCATCTATCTTTATGAGTT+AGG | - | chr3.3:53822476-53822495 | MS.gene008579:CDS | 35.0% | |
| TACAGAATTAGGGTAAGTTG+TGG | - | chr3.3:53822710-53822729 | MS.gene008579:CDS | 35.0% | |
| TCAGTATCACAAACTAAAGG+TGG | - | chr3.3:53824548-53824567 | MS.gene008579:intron | 35.0% | |
| TCATAAAGATAGATGCCTTG+GGG | + | chr3.3:53822473-53822492 | None:intergenic | 35.0% | |
| TGAAAAAAGAACAAGGATGC+TGG | - | chr3.3:53824482-53824501 | MS.gene008579:intron | 35.0% | |
| TGAAAACCATCATGAAGTTG+AGG | - | chr3.3:53824398-53824417 | MS.gene008579:intron | 35.0% | |
| TTAACAGGATAAGCTGATGT+TGG | - | chr3.3:53822832-53822851 | MS.gene008579:intron | 35.0% | |
| AACACACTTACTACTCCAGT+TGG | + | chr3.3:53824435-53824454 | None:intergenic | 40.0% | |
| AACGAATTGAGCATCCTTTG+TGG | - | chr3.3:53824348-53824367 | MS.gene008579:intron | 40.0% | |
| ACCATCATGAAGTTGAGGTT+TGG | - | chr3.3:53824403-53824422 | MS.gene008579:intron | 40.0% | |
| ACCCGGTATGCGATTAATAT+TGG | - | chr3.3:53822507-53822526 | MS.gene008579:CDS | 40.0% | |
| CAATTGAATCCTCTTGAGCT+TGG | + | chr3.3:53824731-53824750 | None:intergenic | 40.0% | |
| CCCAATATTAATCGCATACC+GGG | + | chr3.3:53822511-53822530 | None:intergenic | 40.0% | |
| CCCGGTATGCGATTAATATT+GGG | - | chr3.3:53822508-53822527 | MS.gene008579:CDS | 40.0% | |
| GAAGGAAGTCTACCAAAAGT+TGG | - | chr3.3:53824692-53824711 | MS.gene008579:intron | 40.0% | |
| GAGTAGTAAGTGTGTTGTCA+AGG | - | chr3.3:53824439-53824458 | MS.gene008579:intron | 40.0% | |
| GAGTTGGGTACCAATATTGT+TGG | + | chr3.3:53824140-53824159 | None:intergenic | 40.0% | |
| GTCCGTAACTTCATTAGGAT+TGG | + | chr3.3:53824655-53824674 | None:intergenic | 40.0% | |
| TGAAAAATGGCCCAAGTCAT+TGG | + | chr3.3:53822742-53822761 | None:intergenic | 40.0% | |
| ! | AATGGATTTCCAAGCTCAAG+AGG | - | chr3.3:53824719-53824738 | MS.gene008579:intron | 40.0% |
| !! | CACAAGCATTGATACCACAA+AGG | + | chr3.3:53824365-53824384 | None:intergenic | 40.0% |
| AGAGTGGCTCCCAACAATAT+TGG | - | chr3.3:53824127-53824146 | MS.gene008579:intron | 45.0% | |
| CTTACTACTCCAGTTGGAGA+AGG | + | chr3.3:53824429-53824448 | None:intergenic | 45.0% | |
| GCCAAACCTCAACTTCATGA+TGG | + | chr3.3:53824407-53824426 | None:intergenic | 45.0% | |
| TAGTCAACAACTCAAAGCGG+AGG | - | chr3.3:53822305-53822324 | MS.gene008579:CDS | 45.0% | |
| !!! | ACTTTTTTTTATTTTTTTAA+GGG | + | chr3.3:53823880-53823899 | None:intergenic | 5.0% |
| !!! | ATAAAAGTATTTAAAAAATT+AGG | - | chr3.3:53822621-53822640 | MS.gene008579:CDS | 5.0% |
| !!! | ATAAGTAAATTTTTTTTATA+GGG | + | chr3.3:53823174-53823193 | None:intergenic | 5.0% |
| !!! | ATTTATATATATTTTTCAAT+AGG | - | chr3.3:53824309-53824328 | MS.gene008579:intron | 5.0% |
| !!! | TAAAAGTATTTAAAAAATTA+GGG | - | chr3.3:53822622-53822641 | MS.gene008579:CDS | 5.0% |
| !!! | TACTTTTTTTTATTTTTTTA+AGG | + | chr3.3:53823881-53823900 | None:intergenic | 5.0% |
| !!! | TATAAGTAAATTTTTTTTAT+AGG | + | chr3.3:53823175-53823194 | None:intergenic | 5.0% |
| !!! | TTTATATATATTTTTCAATA+GGG | - | chr3.3:53824310-53824329 | MS.gene008579:intron | 5.0% |
| GTGGCTGTCACCAATGACTT+GGG | - | chr3.3:53822729-53822748 | MS.gene008579:intron | 50.0% | |
| TGTGGCTGTCACCAATGACT+TGG | - | chr3.3:53822728-53822747 | MS.gene008579:intron | 50.0% | |
| GATAATCGGTGTGTGCCCCA+AGG | - | chr3.3:53822455-53822474 | MS.gene008579:CDS | 55.0% | |
| TGAGTTAGGCGGTTGAGACC+CGG | - | chr3.3:53822490-53822509 | MS.gene008579:CDS | 55.0% | |
| ! | GAGGTTTGGCCTTCTCCAAC+TGG | - | chr3.3:53824417-53824436 | MS.gene008579:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 53822274 | 53824803 | 53822274 | ID=MS.gene008579 |
| chr3.3 | mRNA | 53822274 | 53824803 | 53822274 | ID=MS.gene008579.t1;Parent=MS.gene008579 |
| chr3.3 | exon | 53824725 | 53824803 | 53824725 | ID=MS.gene008579.t1.exon1;Parent=MS.gene008579.t1 |
| chr3.3 | CDS | 53824725 | 53824803 | 53824725 | ID=cds.MS.gene008579.t1;Parent=MS.gene008579.t1 |
| chr3.3 | exon | 53822274 | 53822746 | 53822274 | ID=MS.gene008579.t1.exon2;Parent=MS.gene008579.t1 |
| chr3.3 | CDS | 53822274 | 53822746 | 53822274 | ID=cds.MS.gene008579.t1;Parent=MS.gene008579.t1 |
| Gene Sequence |
| Protein sequence |
