AlfalfaGEDB | MS.gene008601

M. sativa cultivar XinJiangDaYe / MS.gene008601

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008037 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022414 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048544 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00954.23 PF08276.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008601.t1	XP_003599318.1	92.2	605	38	2	1	596	181	785	0.00E+00	1160.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008601.t1	P17801	38.4	627	335	17	10	595	198	814	6.9e-110	399.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008601.t1	G7J0Q1	92.2	605	38	2	1	596	181	785	0.0e+00	1160.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene008601.t1	MTR_3g031580	92.231	605	38	2	1	596	181	785	1164
MS.gene008601.t1	MTR_3g031500	87.438	605	63	4	2	596	105	706	1075
MS.gene008601.t1	MTR_3g031490	74.262	610	137	6	2	593	180	787	915
MS.gene008601.t1	MTR_3g031480	68.387	620	166	11	2	594	183	799	816
MS.gene008601.t1	MTR_3g031640	64.839	620	191	7	2	596	179	796	809
MS.gene008601.t1	MTR_3g031470	67.040	625	169	12	2	594	185	804	780
MS.gene008601.t1	MTR_3g031600	63.489	619	200	7	2	596	179	795	772
MS.gene008601.t1	MTR_3g031610	63.328	619	198	10	2	596	179	792	759
MS.gene008601.t1	MTR_7g053050	54.766	619	244	11	2	596	186	792	648
MS.gene008601.t1	MTR_7g058530	55.105	617	244	11	1	596	186	790	647

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008601.t1	AT1G34300	32.750	629	333	27	10	593	173	756	6.03e-79	266
MS.gene008601.t1	AT5G24080	32.374	556	322	19	64	593	147	674	4.29e-75	254
MS.gene008601.t1	AT5G24080	32.374	556	322	19	64	593	147	674	4.29e-75	254
MS.gene008601.t1	AT5G24080	32.554	556	321	19	64	593	274	801	2.50e-74	254
MS.gene008601.t1	AT2G19130	31.500	600	342	18	20	593	210	766	5.66e-74	253
MS.gene008601.t1	AT4G00340	32.194	556	308	17	65	593	246	759	4.56e-71	244
MS.gene008601.t1	AT4G00340	31.942	551	295	16	65	593	246	738	1.19e-69	240
MS.gene008601.t1	AT5G35370	39.799	299	158	5	313	590	503	800	3.23e-63	224
MS.gene008601.t1	AT4G32300	40.656	305	155	8	304	593	471	764	6.02e-63	222
MS.gene008601.t1	AT5G38560	41.472	299	144	8	315	593	327	614	1.19e-59	211

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Find 133 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTATAACATTGCTAT+GGG	0.541542	3.4:-61083330	MS.gene008601:CDS
AAAATTGTTGACCCTAAATT+GGG	0.409813	3.4:-61082908	MS.gene008601:CDS
AAAGTGGATGTTTATAGCTA+TGG	0.440533	3.4:-61083073	MS.gene008601:CDS
AAATCGGCTATACCTTCGGT+TGG	0.614371	3.4:+61083211	None:intergenic
AAATTATGATGCAAAGAGAA+TGG	0.563908	3.4:-61082882	MS.gene008601:CDS
AACAACCAGGACTGGTCTCA+AGG	0.555317	3.4:-61084197	MS.gene008601:CDS
AACATTACCATCAATATCAA+GGG	0.586675	3.4:+61084382	None:intergenic
AACTTTGGCAAATGTTGCTT+TGG	0.360789	3.4:-61082858	MS.gene008601:CDS
AAGGATCTGAATTTGGCTGT+TGG	0.502533	3.4:-61082937	MS.gene008601:CDS
AAGTCTGCTCCATCTTTGTT+TGG	0.401576	3.4:+61083004	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTGGATGTTTATAGCTA+TGG	-	chr3.4:61084295-61084314	MS.gene008601:CDS	30.0%
AAGTTGTCAAACTCAACATA+GGG	+	chr3.4:61083255-61083274	None:intergenic	30.0%
AATGATCTAGATGAAGTAAC+AGG	-	chr3.4:61083696-61083715	MS.gene008601:CDS	30.0%
ACAAGTATACCAAACAAAGA+TGG	-	chr3.4:61084355-61084374	MS.gene008601:CDS	30.0%
ACATGAATTTGATAGGAATG+TGG	-	chr3.4:61083916-61083935	MS.gene008601:CDS	30.0%
ACATTCCTATCAAATTCATG+TGG	+	chr3.4:61083917-61083936	None:intergenic	30.0%
ACCTATTACCATTCCAATAA+AGG	+	chr3.4:61082852-61082871	None:intergenic	30.0%
ACGTTTAATAACTGCATCTT+TGG	+	chr3.4:61083402-61083421	None:intergenic	30.0%
ATGAATTTGATAGGAATGTG+GGG	-	chr3.4:61083918-61083937	MS.gene008601:CDS	30.0%
ATGACAATTCAAATTTCTCG+AGG	-	chr3.4:61084212-61084231	MS.gene008601:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	61082787	61084603	61082787	ID=MS.gene008601
chr3.4	mRNA	61082787	61084603	61082787	ID=MS.gene008601.t1;Parent=MS.gene008601
chr3.4	exon	61083224	61084603	61083224	ID=MS.gene008601.t1.exon1;Parent=MS.gene008601.t1
chr3.4	CDS	61083224	61084603	61083224	ID=cds.MS.gene008601.t1;Parent=MS.gene008601.t1
chr3.4	exon	61082787	61083197	61082787	ID=MS.gene008601.t1.exon2;Parent=MS.gene008601.t1
chr3.4	CDS	61082787	61083197	61082787	ID=cds.MS.gene008601.t1;Parent=MS.gene008601.t1

Gene Sequence

>MS.gene008601

ATGCTTTTTTACGATTACAAAAATAGTCTATGTCTTCGCTACAATGGCGTGCAAAGTTCAAGCCTTTATTGGAATGGTAATAGGTTCACGTACAATAGTAGCAGGGTAGCAACATTAAATCGCTTGGGAAACTTCGGTTCTTTCTATCTATTCCCTTTCAAAACAAGTGATTATGGAACAGTGCTACAAAGAAGATTGACCCTTGATATTGATGGTAATGTTCGAGTTTATAGCCGAAAACATGGGCAAGAGAATTGGTCCGTAACAGCGCAATTCCTCCAGCAACCTTGTCAAATACATGGGATTTGTGGACCTAATAGCGCTTGCAGTTATGATCCAAGAACTGGTAGAAAATGTTCGTGTCTTCCAGGTTATAGCATAATCAACAACCAGGACTGGTCTCAAGGATGCAAACCAAACTTCAAATTTTCTTGCAACAAGACAAAGTCTCGTTTCAAAGTCTTACCCTATGTTGAGTTTGACAACTTCGACAACCATGTATTCTATGAAAATTACACGTATAAGCAATGTAAGCATTTGTGTTTACGATTGTGTGAATGCATAGCCTTCCAATTTCGCTATATGACGGAAGAGGGTCTCTCTTATTGTTTCCCAAAGATGCAGTTATTAAACGTACGCCGTTCAACAGAGTTTGAAGGCTCAGTCTTTCTGCGATTGCCAAAAAACAATACTGTTTTTTCGGAACAATATGATAGTTTGGTTTGTTTGGGTAATAAAGGAGTAAAACAAGTAGGAAGATCATACATCACTTCCAAAGAAAATGGATCAGTGAAGTTCATGCTTTGGTTTGTGAGTGGCTTGGGCGGAATTGAGGTTTTATGCTTCTTTCTAGTAGGGTGTATGTTATATAAGAAGAATAGGAAGCAATCTATTGTTGATATTCATGGGAATGATCTAGATGAAGTAACAGGGTTTAGGAAATTCAGTTACTCTGAAATAAATCAAGCTACAAAAGGTTTTAGCGAAGAGATCGGAAGGGGAGCTGGAGGAACTGTGTATAAAGGTGTTTTATCTGATAATCGAGTTGCTGCAATAAAGCGATTGCAAGATGCAAAACAAGGAGGGAGTGAGTTTCTCGCTGAAGTTAGCATCATTGGAAGGCTTAACCACATGAATTTGATAGGAATGTGGGGTTATTGTGCAGAGGGAAAACACAGATTGTTGGTTTATGAGTACATGGAAAAGGGTACTTTAGCTGATAATCTCTCATCAAATGAACTTGATTGGGGTAAAAGGTATAACATTGCTATGGGAACTGCAAAGGGTCTTGCGTATTTACACGAAGAGTGTTTGGAGTGGATTTTGCATTGCGATATAAAGCCGCAAAACATACTTGTTGACTCTGATTACCAACCGAAGGTATAGCCGATTTTGGTTTGTCTAAGCTATTGAATAGGAATAACCATGACAATTCAAATTTCTCGAGGATCCGAAGGACAAGAGGTTACATGGCACCTGAATGGGTTTTCAACATGCAAATAACTTCAAAAGTGGATGTTTATAGCTATGGAGTTGTGGTGTTGGAGATAATTACTGGAAAGGGTCCAACAAGTATACCAAACAAAGATGGAGCAGACTTTTGTGATGAGAGTTTGGTGACATGGGTTAGGGAAAAAAGGAGAAAAGGATCTGAATTTGGCTGTTGGGTTGAGAAAATTGTTGACCCTAAATTGGGAGCAAATTATGATGCAAAGAGAATGGAAACTTTGGCAAATGTTGCTTTGGATTGTGTTGCTGAAGAGAAAGATGCTAGACCTACCATGAGTCAAGTTGTTGAGAGGCTCCTAAGTCATTAA

Protein sequence

>MS.gene008601.t1

MLFYDYKNSLCLRYNGVQSSSLYWNGNRFTYNSSRVATLNRLGNFGSFYLFPFKTSDYGTVLQRRLTLDIDGNVRVYSRKHGQENWSVTAQFLQQPCQIHGICGPNSACSYDPRTGRKCSCLPGYSIINNQDWSQGCKPNFKFSCNKTKSRFKVLPYVEFDNFDNHVFYENYTYKQCKHLCLRLCECIAFQFRYMTEEGLSYCFPKMQLLNVRRSTEFEGSVFLRLPKNNTVFSEQYDSLVCLGNKGVKQVGRSYITSKENGSVKFMLWFVSGLGGIEVLCFFLVGCMLYKKNRKQSIVDIHGNDLDEVTGFRKFSYSEINQATKGFSEEIGRGAGGTVYKGVLSDNRVAAIKRLQDAKQGGSEFLAEVSIIGRLNHMNLIGMWGYCAEGKHRLLVYEYMEKGTLADNLSSNELDWGKRYNIAMGTAKGLAYLHEECLEWILHCDIKPQNILVDSDYQPKLLNRNNHDNSNFSRIRRTRGYMAPEWVFNMQITSKVDVYSYGVVVLEIITGKGPTSIPNKDGADFCDESLVTWVREKRRKGSEFGCWVEKIVDPKLGANYDAKRMETLANVALDCVAEEKDARPTMSQVVERLLSH